88ad7118bc
Merge branch 'ScoutRTRelease' into 'master'
fattori_g2025-04-17 13:54:52 +02:00
9cfc7d3aa3
trilinear interpolation Ray geometry and interpolation fixed.
siddonTril
Proton local user
2024-11-08 14:47:36 +01:00
35f8ff18d4
tril performance now Tril done only for pixels above threshold. there is a mistake beacause the image is not moving consistely in the right direction when apply small shifts in sequence
Proton local user
2024-11-04 23:12:16 +01:00
8e56950e24
Trilinear interpolation along the ray implementation of trilinear interpolation of CT voxel intensities to render properly sub-voxel transforms related to issue #150 it seems to work, to understan how much the performance degrades and if this should be always performed or not.
Proton local user
2024-11-01 09:59:53 +01:00
7b9db5e25d
Merge branch 'ScalarRangeDRT' into 'ScoutRTRelease'
via_r2024-09-23 09:20:46 +02:00
5196241a7b
Solved Issue #149. Introduced new function for returning projection from imageProcessor with original Scalar Range which is used when saving the DRR. Visualisation is kept fixed (hard-coded upper limits: 0-2048).
Proton local user
2024-08-22 15:54:16 +02:00
affd24b48e
Working on Scalar Range issue. Intorudcing two different functions for writing and rendering Projections
Proton local user
2024-08-22 13:07:00 +02:00
4989d021bd
Strarting playing with Scalar Range of DRT
Proton local user
2024-08-21 09:18:27 +02:00
66762fac79
Merge branch 'OffRevRenderingAlternative' into 'ScoutRTRelease'
via_r2024-08-07 09:31:43 +02:00
c8b15d2d35
Merge branch 'DRRSavingAndErrorHandling' into 'OffRevRenderingAlternative'
via_r2024-08-07 09:25:25 +02:00
dd63d59841
Finished work on usigned short checks for DRR images as well as better handling and logging of errors in Data Saving
Proton local user
2024-07-23 14:54:26 +02:00
f15a6f5871
Cleaning unused variables here and there - variables are commented out or warning prevented using a unused_variable macro
Proton local user
2024-05-23 00:10:31 +02:00
e555e9421d
RTSMarker bug - minor cleanup compiler warnings
Proton local user
2024-02-09 14:31:50 +01:00
8b43e43132
window title software version removed
Proton local user
2024-02-09 14:15:28 +01:00
e0a1ea5034
RTSMarker bug clean up some debug couts
Proton local user
2024-02-09 14:14:15 +01:00
e945c91337
RTSMarker bug - fixed rendering pipeline. a cross mark is displayed if we have a struct with a single point - in case of 2 points, we do nothing, just pass on the two points - if we have a full structure, we process it as usual - fix to be ported into the writer
Proton local user
2024-02-09 14:09:22 +01:00
632303efcc
Merge branch 'ScoutRTRelease' into 'master'
via_r2023-08-30 10:35:42 +02:00
15a5154ec5
Improved visualisation of missing data in DcnCheckView
Proton local user
2023-07-04 11:40:54 +02:00
cc6f2a8c00
cleaning up valgrind
Proton local user
2023-07-01 14:33:09 +02:00
2f31cf4b29
cleaning based on valgrind input a number of cleanups, the most critical probably in ui_RegistrationView.cpp:403 setupParentUIMenu, where a variable was accessed before initialisation
Proton local user
2023-07-01 01:21:28 +02:00
33a9cc7ec2
SetDefaultPixel value of resampler
Proton local user
2023-06-27 09:43:10 +02:00
2d5a51a4aa
Merge branch 'ScoutRTresampVolume' into 'ScoutRTUIDevel'
via_r2023-06-14 14:00:08 +02:00
6162edacfd
Interpolation on/off and desired spacing in lng in config
Proton local user
2023-06-14 13:57:21 +02:00
cdc75507ac
Resampling by halfing spacing in Z directions
Proton local user
2023-06-12 16:19:04 +02:00
bbb1c5c428
First attempt resampler
Proton local user
2023-06-12 15:00:09 +02:00
ad7f0986f7
SOlved bug in reg23 related to initialization of simplexdelta in case of 6DOF. Closing Issue number #60
Proton local user
2023-06-07 18:05:36 +02:00
4e2a7d87b1
Related to alredy closed Issue #97 - added update on ISO. Also taking out Panel Offset completely from Projection leads to some results. Makes sense. It is now commented on the code but will be kept in case of future analysis
Proton local user
2023-06-07 11:37:17 +02:00
005f42aa55
Closing Issue #97 - Panel offset set on Projected point as well as after inverse transform. Dependencies on Image and Patient Orientation. Solved with filter knowledge of pCT parameters.
Proton local user
2023-06-06 17:37:49 +02:00
a59de4370c
Merge branch 'Siddon' into 'ScoutRTUIDevel'
fattori_g2023-06-06 15:21:24 +02:00
39a9c1e47b
Panel offset in contour projector
Proton local user
2023-06-06 14:16:46 +02:00
1c247296b2
Closing Issue #93 and #91 - The unit of length in the UI (all dialogs and widgets can now be set from config
Proton local user
2023-06-06 11:21:50 +02:00
90cfe3defd
Siddon revised code to correct ray calculation that uses boundaries instead of voxel centers as we were expecting
Proton local user
2023-06-06 10:48:06 +02:00
6f3a5d70b6
Siddon geometry
Proton local user
2023-06-06 00:04:05 +02:00
a529ad033c
Working on Issue #45 . New interaction function by clicking on button R of keyboard. In blending it does camera resetting and in WIping it centers the wipe widget. Also added in config key PreserveLocalData
Proton local user
2023-06-05 12:55:23 +02:00
1aca4117c6
Amoeba iterations -reopening issue #91 -passing our best guess of iteration instead of metric
Proton local user
2023-06-01 18:25:06 +02:00
21bb27c0f1
Export SRO matrix and dialog unit - Fixed a transpose in export matrix to SRO - Approval dialog in cm
Proton local user
2023-06-01 17:53:43 +02:00
3c3f1a378b
Closing Issue #63 . Also relates to contour misplacement. Problems arise when canceling autoreg. Now fixed. Also closing issue #91 - Not the most elegant solution. For amoeba we do not visualise Iteration but value of optimizer.
Proton local user
2023-06-01 14:43:55 +02:00
8a34450119
PanelOffset for FFS
Proton local user
2023-05-27 00:46:19 +02:00
c833837d8b
Closing Issue #75: string for StationName is static but was never cleared.
Proton local user
2023-05-26 17:18:21 +02:00
7df40c19ad
Set Degress of Freedom fo Registration in Config. 6 DOF auto and manual is working
Proton local user
2023-05-25 14:39:19 +02:00
c5319a5493
added new fields to COnfig View and Number Of hIstogram bins in MI
Proton local user
2023-05-25 09:27:20 +02:00
29e2935c59
All metric and optimizer parameters of Automatic Registration are moved to Config file
Proton local user
2023-05-24 18:52:44 +02:00
98ada50379
Reg23 ROI - fixed the known issue of ROI not defined automatically before interaction - whole region is used as default, until user changes that - reset on patient unload, the next one should start again from full region.
Proton local user
2023-05-24 13:18:06 +02:00
3e8a113ae6
Menu - Signals to itkImageProcessor to change metric and optimizer
Proton local user
2023-05-24 11:08:14 +02:00
14f4aca6d1
Merge branch 'ScoutRTUIDevel' into 'master'
fattori_g2023-05-23 17:07:47 +02:00
205f2f9db1
Merge branch 'scoutRTUIDevelREG' into 'ScoutRTUIDevel'
via_r2023-05-23 15:06:08 +02:00
47fe531aae
R23 ROI Fixed and initial on LUT - Fixed bug in ROI itkRegion definition, missing division by spacing - Consistent results using Small (1mm) or Large (2mm) FoV - Some initial work on LUT, to polish...
Proton local user
2023-05-19 23:40:46 +02:00
bc3d3e7e54
autoReg23 code restructure - all automatic registration stuff moved to another itk object - most of input are passed as pointers from the parent
Proton local user
2023-05-19 16:03:59 +02:00
d67627a6fc
Review of multiple optimizers - metrics - not usuable util the opti and metric types are better defined using enums - ROI are passed to both metrics - Full functionalty only for Powell(NCC or MI), mainly due to GetFinalR23Parameters which get those from Powell....
Proton local user
2023-05-17 23:53:02 +02:00
8d2976ebbc
Merge branch 'scoutRTUIDevelREG' into 'ScoutRTUIDevel'
via_r2023-05-17 11:12:44 +02:00
ab29d81e5e
UseOfRotations for hidden transform and station name - itkDRT has method to set whether rotations should be used for import offset and hidden transform. Results checked against external code for final PAT conversion. - helpers for query of station name and Fov moved to helpers functions file - preparation of station name check in scout processor load of 2D and 3D images
Proton local user
2023-05-17 10:49:22 +02:00
21751524bb
Calculation of offset in PAT and rework of signals to approval. - offset calc is verified against outside script. To be careful now in case we want to exclude the rotations from import offset. For PAT calc we need the complete matrix, therefore we may need to filter the rotations somewhere else. - initial work on signal of current transform. was based on readout of spin box. i would use internal storage and check it against spin. - i leave it broken so that we know where to continue
Proton local user
2023-05-16 17:03:26 +02:00
e97a246427
Crash on close patient and removal of uncessary load from dir - flipped unload sequence, Scouts, RTP, RTS, CT - removed unused load functions
Proton local user
2023-05-16 13:57:58 +02:00
646ba2e0af
Calculate Transfrom for SRO isocetric mapped to pCT Zero.
Proton local user
2023-05-15 18:09:04 +02:00
9b616b3b55
a number of autoREG and geometry fixes - automatic registration actually makes use of ROI. Before were ignored. - cleanup of user and hidden transform and pass to UI after registration. - change of internal image interpolator used in autoREG. Now autoREG performs well. - general number of working units variable. - GetFinalRotations, GetFinalTranslations and GetTransformParameters become obsolete. - GetFinalR23Parameters and GetCompleteIsocentricTransform and GetUserIsocentricTransform are provided. - only GetCompleteIsocentricTransform is missing implementation.
Proton local user
2023-05-15 17:02:18 +02:00
d4c800dfcd
R23 optimizes the isocentric IEC transform, internally the two internal transform are computed at every iteration. As a result, the feedback to regDialog is now already correct, no need for flips or sign change. CalculateExternalTransform becomes obsolete... and has been commented out. Methods for gui to get latest paremeters have been rewritten.
Proton local user
2023-05-12 23:36:24 +02:00
6ad0344791
MapTransformToNewOrigin and CalcInternalTransformV3 moved to another file, ouside of scout processor
Proton local user
2023-05-12 16:13:12 +02:00
9a8faa0693
Simplified CalcInternalTransformV3 which makes use of T and R calculated by the transform Meta
Proton local user
2023-05-12 14:55:17 +02:00
c67281a10a
new R23MetaInfo so that R23 does not need TransformMeta anymore
Proton local user
2023-05-12 14:00:32 +02:00
07db119315
backup before changing meta reg
Proton local user
2023-05-12 13:29:02 +02:00
48a96061c2
Merge branch 'ScoutRTUIDevel' into 'scoutRTUIDevelREG'
fattori_g2023-05-11 09:43:15 +02:00
9f126e8a34
debug commented
Proton local user
2023-05-11 09:41:10 +02:00
2a6a8d4922
Solved bug that would cause crash when trying to change parameters of regEngine with CT not yet loaded (example loading Scout LONG in DataView). Minor changes in UI functionalities to adjust for this new behaviour. Now loading of scouts is automatically followed by visualisation
Proton local user
2023-05-08 17:54:16 +02:00
b0beda81b8
REG working
Proton local user
2023-05-03 16:43:52 +02:00
2d9d3d97bd
RTPlan data widget as TreeWidget
Proton local user
2023-05-03 16:43:13 +02:00
24e7435376
Merge branch 'scoutRTUIDevelTemp' into 'ScoutRTUIDevel'
via_r2023-05-03 14:19:18 +00:00
8cdb53731f
Merge branch 'ScoutRTUIDevel' into 'scoutRTUIDevelTemp'
via_r2023-05-03 14:14:16 +00:00
8e6c9e9aba
Some work on UI
Proton local user
2023-05-03 16:08:17 +02:00
97674c6b4b
Cleanup debug print
Proton local user
2023-05-03 15:19:50 +02:00
9b5921dd60
autoReg working
Proton local user
2023-05-03 14:41:52 +02:00
f166060a71
review of projection geometry definition - introduction of CalculateInternalTransformV2 - Each projection maps the isocentric transform (RTIso COR) to its own projection center, including calibration offset. - Direct comparison with previous implementation of CalculateInternalTransform not done... yet. - Results on validation dataset are good. - This change was triggered by rather large errors (ca. 0.8mm) on validation dataset. - Both fakeIso and DCM RTPlan iso have been updated to V2.
Proton local user
2023-05-02 23:46:48 +02:00
b7bf26b0d2
Working on modeling panel offset: - panel offset moved to gSiddon, output image w/ offset are available to reg23 - calibration in settings.ini is a mix of fitting and manual review in SRT - calibration images reviewed (all: short long AP PA) - Test with validation dataset is good. However only for IECS2CT2 w/ translations only. Import offset and hidden transform confuse the situation. Unclear if should be used or not when w/o resildual wrt LT is belo 0.3 - registration dialog is modal.'
Proton local user
2023-04-30 23:33:25 +02:00
292032fca2
Major modifications to account for introducing in the calibration paramters the panel center offset: This include as most important changes: - itkImageProcessor UpdateProjectionGeometryMeta - SetOriginLPS now includes that offset - ui_qvtk_handler: change in overlapping of two images. This now use the vtk provided image center which also consider image orientation and allows us to work under no assumption of center at same position between DRT and TOPO This release was tested on Imaging calibration data. Consistency was good. On Phantom data also good consistency on Correction Vector between SHORT and LONG
Proton local user
2023-04-28 18:51:28 +02:00
6af205e60e
ROI implemented - check functionalities on proper dataset
Proton local user
2023-04-17 13:33:18 +02:00
Giovanni Fattori
fattori_g
via_r