Merge branch 'ScoutRTUIDevel' into 'scoutRTUIDevelREG'

Added Check on Scouts Station Name and Manual Correction Steps in config....

See merge request cpt_bioeng/drt!25

reg23Topograms/itkDTRrecon/itkImageProcessor.cpp

@@ -471,7 +471,7 @@ int itkImageProcessor::load3DSerieFromFiles( std::vector<std::string> v_fnames){
 
         imageSeriesReader3D->SetImageIO(dicomIO);
         imageSeriesReader3D->SetFileNames(v_sortedFnames);
-        //imageSeriesReader3D->SetNumberOfWorkUnits(8);
+        imageSeriesReader3D->SetNumberOfWorkUnits(8);
         imageSeriesReader3D->ForceOrthogonalDirectionOff(); // properly read CTs with gantry tilt
         //imageSeriesReader3D->SetSpacingWarningRelThreshold();
 
@@ -694,13 +694,13 @@ int itkImageProcessor::fill3DVolumeMeta(
     }
 
     if(m_DRTImage2MetaInfo != NULL){
-                std::cout << "NEVER HERE m_DRTImage2MetaInfo" << std::endl;
+        std::cout << "NEVER HERE m_DRTImage2MetaInfo" << std::endl;
-                m_DRTImage2MetaInfo = NULL;
+        m_DRTImage2MetaInfo = NULL;
     }
 
     if(m_RTMetaInfo != NULL){
-                std::cout << "NEVER HERE m_RTMetaInfo" << std::endl;
+        std::cout << "NEVER HERE m_RTMetaInfo" << std::endl;
-                m_RTMetaInfo = NULL;
+        m_RTMetaInfo = NULL;
     }
 
 
@@ -1122,7 +1122,6 @@ int itkImageProcessor::load2D(const char * pcFName){
 
     //double* m_ImageIntensity;
     DuplicatorType::Pointer m_Duplicator;
-    bool* m_ImLoaded;
     TopogramImageMetaInformation::Pointer m_TImageMeta;
 
     switch (currProjOrientation) {
@@ -1785,6 +1784,7 @@ void itkImageProcessor::InitializeProjector()
             m_DRTImage2MetaInfo == NULL ||
             m_DRTGeometryMetaInfo == NULL ||
             m_TransformMetaInfo == NULL     ){
+        return;
         //TODO
         return;
     }
@@ -2079,18 +2079,22 @@ void itkImageProcessor::loadRTPlanInfo(
 void itkImageProcessor::UpdateProjectionGeometryMeta(){
 
     if(m_CTMetaInfo == NULL){
+        return;
         //TODO.
     }
 
     if(m_DRTGeometryMetaInfo == NULL){
+        return;
         //TODO.
     }
 
     if(m_DRTImage1MetaInfo == NULL){
+        return;
         //TODO.
     }
 
     if(m_DRTImage2MetaInfo == NULL){
+        return;
         //TODO.
     }
 
@@ -2323,6 +2327,7 @@ void itkImageProcessor::GetProjectionImages(){
             m_DRTImage2MetaInfo == NULL ||
             m_DRTGeometryMetaInfo == NULL ||
             m_TransformMetaInfo == NULL     ){
+        return;
         //TODO
         return;
     }
@@ -2703,6 +2708,14 @@ vtkImageData* itkImageProcessor::GetLocalizer2VTK()
 
 vtkImageData* itkImageProcessor::GetProjection1VTK()
 {
+
+    if(m_DRTImage1MetaInfo == NULL ||
+            m_DRTGeometryMetaInfo == NULL ||
+            m_TransformMetaInfo == NULL     ){
+        return NULL;
+        //TODO
+    }
+
     // Rescale the intensity of the projection images to 0-32768 for output.
     using RescaleFilterType = itk::RescaleIntensityImageFilter<InternalImageType, OutputImageType>;
 
@@ -2832,6 +2845,13 @@ vtkMatrix4x4 * itkImageProcessor::GetProjection2VTKTransform()
 
 vtkImageData* itkImageProcessor::GetProjection2VTK()
 {
+    if(m_DRTImage2MetaInfo == NULL ||
+            m_DRTGeometryMetaInfo == NULL ||
+            m_TransformMetaInfo == NULL     ){
+        return NULL;
+        //TODO
+    }
+
     // Rescale the intensity of the projection images to 0-32768 for output.
     using RescaleFilterType = itk::RescaleIntensityImageFilter<InternalImageType, OutputImageType>;
 

reg23Topograms/itkDTRrecon/itkImageProcessor.h

@@ -237,7 +237,6 @@ private:
     using ResampleFilterType = itk::ResampleImageFilter<InternalImageType, InternalImageType>;
 
     /** Optimizer which tries to find the minimn (Powell Optimizer)*/
-    //    using OptimizerType = itk::PowellOptimizer;
     using AmoebaOptimizerType = itk::AmoebaOptimizer;
     /** Optimizer which samples the whol space */
     using ExhaustiveOptimizerType = itk::ExhaustiveOptimizer;
@@ -266,7 +265,9 @@ private:
     using ITKtoVTKFilterType = itk::ImageToVTKImageFilter<OutputImageType>;
 
     void
-    CalculateExternalUserTransform(TransformType::Pointer transform, DRTImageMetaInformation::Pointer imageMetaInfo);
+    CalculateExternalUserTransform(
+            TransformType::Pointer transform,
+            DRTImageMetaInformation::Pointer imageMetaInfo);
 
 //    TransformType::Pointer
 //    CalculateInternalTransform(
@@ -294,6 +295,7 @@ private:
               );
 
 
+
     TransformType::Pointer
     transform1,
     transform2;