mirror of
https://gitlab.ethz.ch/gfattori/glocalize.git
synced 2026-05-04 14:14:34 +02:00
Giovanni Fattori
f18e57ff0e
This extends the embedded function in gOTS code with: - manual volume masking - visualization tools - no memory issues.
215 lines
4.9 KiB
C++
Executable File
215 lines
4.9 KiB
C++
Executable File
#ifndef _GLOCALIZE_H_
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#define _GLOCALIZE_H_
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#include <QObject.h>
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#include <vtkImageData.h>
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#include <QThread>
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#include <vtkActor.h>
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#include <vtkAlgorithm.h>
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#include <vtkCellPicker.h>
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#include <vtkDataSet.h>
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#include <vtkExtractEdges.h>
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#include <vtkImageData.h>
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#include <vtkIterativeClosestPointTransform.h>
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#include <vtkImageMarchingCubes.h>
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#include <vtkImageData.h>
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#include <vtkImageThreshold.h>
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#include <vtkImagePlaneWidget.h>
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#include <vtkLandmarkTransform.h>
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#include <vtkMarchingCubes.h>
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#include <vtkPolyDataAlgorithm.h>
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#include <vtkPolyData.h>
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#include <vtkPolyDataMapper.h>
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#include <vtkPolyDataNormals.h>
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#include <vtkPolyDataConnectivityFilter.h>
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#include <vtkPolyDataCollection.h>
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#include <vtkPoints.h>
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#include <vtkProperty.h>
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#include <vtkSource.h>
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#include <vtkSmartPointer.h>
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#include <vtkPolyData.h>
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#include <vtkPolyDataConnectivityFilter.h>
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#include <vtkRenderWindowInteractor.h>
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#include <vtkRenderer.h>
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#include <vtkRenderWindow.h>
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#include <vtkPolyDataMapper.h>
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#include <vtkSphereSource.h>
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#include <vtkWindowedSincPolyDataFilter.h>
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//#include "gSkullRemoval.h"
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#include <qstring.h>
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#include <qlist.h>
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#include <QMetaType>
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#include <QProgressBar>
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#include <gdcmGlobal.h>
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#include <iostream>
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//#include "gTRiPtools_b.h"
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#include <vtkCamera.h>
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//#include "resampler.h"
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#include <vtkMetaImageReader.h>
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#include <vtkGDCMPolyDataReader.h>
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#include <vtkHomogeneousTransform.h>
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#include <gdcmReader.h>
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#include <gdcmAttribute.h>
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#include <gdcmStringFilter.h>
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#include <vtkMatrix4x4.h>
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#include <gdcmDict.h>
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#include <gdcmDirectory.h>
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#include <vtkImageChangeInformation.h>
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#include <vtkImageData.h>
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#include <vtkImageReslice.h>
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#include <vtkVolumeProperty.h>
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#include <vtkColorTransferFunction.h>
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#include <vtkPiecewiseFunction.h>
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#include <vtkVolume.h>
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#include <vtkSmartVolumeMapper.h>
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#include <vtkSmartPointer.h>
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#include <vtkRenderWindow.h>
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#include <vtkRenderer.h>
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#include <vtkRenderWindowInteractor.h>
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#include <vtkAxesActor.h>
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#include <vtkImageData.h>
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#include <vtkPolyDataMapper.h>
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#include <vtkProperty.h>
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#include <vtkAppendPolyData.h>
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#include <vtkSurfaceReconstructionFilter.h>
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#include <vtkContourFilter.h>
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#include <vtkCaptionActor2D.h>
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#include <vtkTextProperty.h>
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#include <vtkAbstractTransform.h>
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#include <ostream>
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#include <vtkTransform.h>
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#include <vtkPolyData.h>
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#include <vtkTransformPolyDataFilter.h>
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#include <vtkImageData.h>
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#include <vtkImageFlip.h>
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#include <vtkImageChangeInformation.h>
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#include <vtkSmartPointer.h>
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#include <vtkStringArray.h>
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#include <vtkCellData.h>
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#include <vtkPointData.h>
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#include <vtkGDCMImageReader.h>
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#include <vtkGDCMPolyDataReader.h>
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#include <gdcmDirectory.h>
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#include <gdcmIPPSorter.h>
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#include <gdcmSystem.h>
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#include <vtkMatrixToLinearTransform.h>
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// #include <qstring.h>
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#include <vtkCellArray.h>
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#include <vtkLine.h>
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#include <vtkGDCMThreadedImageReader.h>
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#include <vtkTransformFilter.h>
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#include <vtkSelectEnclosedPoints.h>
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#include <vtkPolygon.h>
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#include <string>
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#include <vtkImageWriter.h>
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#include <gdcmUIDs.h>
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#include <vector>
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#define ORDER_BIGENDIAN 0
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#define ORDER_LITTLEENDIAN 1
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#define ORDER_UNKNOWN 2
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// Some Macros to make the code more readable
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//
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//#ifndef SWAP_TMP_INT
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// #define SWAP_TMP_INT
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// #define EVAL_INDEX(X,Y,L) (reference[ (Y)*(L) +(X)])
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// int swap_tmp_int;
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// #define INT_SWAP(X,Y) swap_tmp_int=X; X=Y; Y=swap_tmp_int;
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//#endif
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//
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//
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#define N_ITERAZ_ICP 100
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typedef struct {
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public:
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double x;
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double y;
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double z;
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}point;
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typedef struct {
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public:
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int sorting;
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int surfn;
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double lenght;
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int ntriangle;
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int npoint;
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double bounds[6];
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double center[3];
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double volume;
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int ismarker;
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point centroid;
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double centroid_median [3];
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point fitting ;
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double confronto_lati;
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double hausdorff;
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}surf;
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class gLocalize : public QObject{
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Q_OBJECT
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public:
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gLocalize();
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public slots:
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void localize(vtkImageData* vol,
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int march_tresh,
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double thrDown_D,
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double thrUp_D,
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double thr_HAUSD,
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double thr_S,
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QList <bool> selectedFilters);
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void callAbort(){
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cout<< "Aborted" <<endl;
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abortSignal=true;
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};
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signals:
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void localizationEnd(QList<surf>);
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void localizationProgress(int);
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void localizationAborted();
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private:
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double hausdorff(vtkPolyDataConnectivityFilter* filter, surf tempsurf);
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int get_byteorder();
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double lati(double p[6]);
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point centroid(QList< point > punti);
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volatile bool abortSignal;
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/**
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* Functions for Qlist sorting
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*/
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bool lenghtLessThan(const surf &d1, const surf &d2){ return d1.lenght > d2.lenght; };
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bool tringleLessThan(const surf &d1, const surf &d2){ return d1.ntriangle > d2.ntriangle; };
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bool zLessThan(const surf &d1, const surf &d2){ return d1.center[2] < d2.center[2]; };
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bool confronto_latiLessThan(const surf &d1, const surf &d2){return d1.confronto_lati<d2.confronto_lati;};
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};
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#endif |