diff --git a/documentation/Doxyfile@ b/documentation/Doxyfile@
index 482564264..442731a30 100644
--- a/documentation/Doxyfile@
+++ b/documentation/Doxyfile@
@@ -241,12 +241,6 @@ TAB_SIZE               = 4
 
 ALIASES                = 
 
-# This tag can be used to specify a number of word-keyword mappings (TCL only).
-# A mapping has the form "name=value". For example adding "class=itcl::class"
-# will allow you to use the command class in the itcl::class meaning.
-
-TCL_SUBST              = 
-
 # Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C sources
 # only. Doxygen will then generate output that is more tailored for C. For
 # instance, some of the names that are used will be different. The list of all
@@ -2094,12 +2088,6 @@ EXTERNAL_GROUPS        = YES
 
 EXTERNAL_PAGES         = YES
 
-# The PERL_PATH should be the absolute path and name of the perl script
-# interpreter (i.e. the result of 'which perl').
-# The default file (with absolute path) is: /usr/bin/perl.
-
-PERL_PATH              = /usr/bin/perl
-
 #---------------------------------------------------------------------------
 # Configuration options related to the dot tool
 #---------------------------------------------------------------------------
@@ -2113,15 +2101,6 @@ PERL_PATH              = /usr/bin/perl
 
 CLASS_DIAGRAMS         = YES
 
-# You can define message sequence charts within doxygen comments using the \msc
-# command. Doxygen will then run the mscgen tool (see:
-# http://www.mcternan.me.uk/mscgen/)) to produce the chart and insert it in the
-# documentation. The MSCGEN_PATH tag allows you to specify the directory where
-# the mscgen tool resides. If left empty the tool is assumed to be found in the
-# default search path.
-
-MSCGEN_PATH            = 
-
 # You can include diagrams made with dia in doxygen documentation. Doxygen will
 # then run dia to produce the diagram and insert it in the documentation. The
 # DIA_PATH tag allows you to specify the directory where the dia binary resides.
diff --git a/documentation/Makefile b/documentation/Makefile
index 8148687cb..f94cd9d5f 100644
--- a/documentation/Makefile
+++ b/documentation/Makefile
@@ -5,7 +5,7 @@ ifdef T_A
 
 DOXYGEN=doxygen
 
-EXPAND = Doxyfile
+EXPAND = Doxyfile@
 
 EXPAND_ME += EPICS_VERSION
 EXPAND_ME += EPICS_REVISION
@@ -16,7 +16,7 @@ ME = documentation/O.$(T_A)/html
 
 install: doxygen
 
-doxygen: Doxyfile
+doxygen: Doxyfile ../mainpage.dox
 	$(DOXYGEN)
 	rsync -av $(TOP)/html/ html/
 
diff --git a/documentation/mainpage.dox b/documentation/mainpage.dox
index f13fdcf97..472f1d999 100644
--- a/documentation/mainpage.dox
+++ b/documentation/mainpage.dox
@@ -3,7 +3,6 @@
 
 Documentation index
 
-@ul
 @li @ref releasenotes
 @li @ref install
 @li @ref recordrefmanual