mirror of
https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2025-04-22 22:40:02 +02:00
a556b2a7da
git-svn-id: file:///afs/psi.ch/project/sls_det_software/svn/slsDetectorSoftware@118 951219d9-93cf-4727-9268-0efd64621fa3
2221 lines
49 KiB
C++
2221 lines
49 KiB
C++
#include "slsDetectorUtils.h"
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#include "usersFunctions.h"
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#include <sys/ipc.h>
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#include <sys/shm.h>
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slsDetectorUtils::slsDetectorUtils() : queuesize(0),
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currentPosition(0),
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currentPositionIndex(0),
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currentI0(0),
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mergingBins(NULL),
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mergingCounts(NULL),
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mergingErrors(NULL),
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mergingMultiplicity(NULL),
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badChannelMask(NULL)
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{
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pthread_mutex_t mp1 = PTHREAD_MUTEX_INITIALIZER;
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mp=mp1;
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pthread_mutex_init(&mp, NULL);
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}
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int slsDetectorUtils::getPointers(int * const l_stoppedFlag, \
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int * const l_threadedProcessing, \
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int * const l_actionMask, \
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mystring * const l_actionScript, \
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mystring * const l_actionParameter, \
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int * const l_nScanSteps, \
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int * const l_scanMode, \
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mystring * const l_scanScript, \
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mystring * const l_scanParameter, \
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mysteps * const l_scanSteps, \
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int * const l_scanPrecision, \
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int * const l_numberOfPositions, \
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float * const l_detPositions, \
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char * const l_angConvFile, \
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int * const l_correctionMask, \
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float * const l_binSize, \
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float * const l_fineOffset, \
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float * const l_globalOffset, \
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int * const l_angDirection, \
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char * const l_flatFieldDir, \
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char * const l_flatFieldFile, \
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char * const l_badChanFile, \
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int64_t * const l_timerValue, \
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detectorSettings * const l_currentSettings, \
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int * const l_currentThresholdEV, \
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char * const l_filePath, \
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char * const l_fileName, \
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int * const l_fileIndex)
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{
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stoppedFlag=l_stoppedFlag;
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threadedProcessing=l_threadedProcessing;
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actionMask=l_actionMask;
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actionScript=l_actionScript;
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actionParameter=l_actionParameter;
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nScanSteps=l_nScanSteps;
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scanSteps=l_scanSteps;
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scanScript=l_scanScript;
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scanParameter=l_scanParameter;
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scanMode=l_scanMode;
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scanPrecision=l_scanPrecision;
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numberOfPositions=l_numberOfPositions;
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detPositions=l_detPositions;
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angConvFile=l_angConvFile;
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correctionMask=l_correctionMask;
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binSize=l_binSize;
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fineOffset=l_fineOffset;
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globalOffset=l_globalOffset;
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angDirection=l_angDirection;
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flatFieldDir=l_flatFieldDir;
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flatFieldFile=l_flatFieldFile;
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badChanFile=l_badChanFile;
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// nBadChans=l_nBadChans;
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// badChansList=l_badChansList;
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// nBadFF=l_nBadFF;
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// badFFList=l_badFFList;
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timerValue=l_timerValue;
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currentSettings=l_currentSettings;
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currentThresholdEV=l_currentThresholdEV;
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filePath=l_filePath;
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fileName=l_fileName;
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fileIndex=l_fileIndex;
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return OK;
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}
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string slsDetectorUtils::createFileName(char *filepath, char *filename, int aMask, float sv0, int prec0, float sv1, int prec1, int pindex, int npos, int findex) {
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ostringstream osfn;
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// string fn;
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/*directory name +root file name */
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osfn << filepath << "/" << filename;
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// cout << osfn.str() << endl;
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// scan level 0
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if ( aMask& (1 << (MAX_ACTIONS)))
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osfn << "_S" << fixed << setprecision(prec0) << sv0;
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//cout << osfn.str() << endl;
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//scan level 1
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if (aMask & (1 << (MAX_ACTIONS+1)))
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osfn << "_s" << fixed << setprecision(prec1) << sv1;
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//cout << osfn.str() << endl;
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//position
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if (pindex>0 && pindex<=npos)
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osfn << "_p" << pindex;
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//cout << osfn.str() << endl;
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// file index
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osfn << "_" << findex;
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//cout << osfn.str() << endl;
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#ifdef VERBOSE
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cout << "created file name " << osfn.str() << endl;
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#endif
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//cout << osfn.str() << endl;
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//fn=oosfn.str()sfn.str();
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return osfn.str();
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}
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/* I/O */
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/* generates file name without extension*/
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string slsDetectorUtils::createFileName() {
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return createFileName(filePath, \
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fileName, \
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*actionMask, \
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currentScanVariable[0], \
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scanPrecision[0], \
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currentScanVariable[1], \
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scanPrecision[1], \
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currentPositionIndex, \
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*numberOfPositions, \
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*fileIndex\
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);
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}
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int slsDetectorUtils::getFileIndexFromFileName(string fname) {
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int i;
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size_t dot=fname.rfind(".");
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if (dot==string::npos)
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return -1;
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size_t uscore=fname.rfind("_");
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if (uscore==string::npos)
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return -1;
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if (sscanf( fname.substr(uscore+1,dot-uscore-1).c_str(),"%d",&i)) {
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return i;
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}
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//#ifdef VERBOSE
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cout << "******************************** cannot parse file index" << endl;
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//#endif
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return 0;
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}
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int slsDetectorUtils::getVariablesFromFileName(string fname, int &index, int &p_index, float &sv0, float &sv1) {
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int i;
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float f;
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string s;
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index=-1;
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p_index=-1;
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sv0=-1;
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sv1=-1;
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// size_t dot=fname.rfind(".");
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//if (dot==string::npos)
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// return -1;
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size_t uscore=fname.rfind("_");
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if (uscore==string::npos)
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return -1;
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s=fname;
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//if (sscanf(s.substr(uscore+1,dot-uscore-1).c_str(),"%d",&i)) {
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if (sscanf(s.substr(uscore+1,s.size()-uscore-1).c_str(),"%d",&i)) {
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index=i;
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#ifdef VERBOSE
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cout << "******************************** file index is " << index << endl;
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#endif
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//return i;
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s=fname.substr(0,uscore);
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}
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#ifdef VERBOSE
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else
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cout << "******************************** cannot parse file index" << endl;
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cout << s << endl;
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#endif
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uscore=s.rfind("_");
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if (sscanf( s.substr(uscore+1,s.size()-uscore-1).c_str(),"p%d",&i)) {
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p_index=i;
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#ifdef VERBOSE
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cout << "******************************** position index is " << p_index << endl;
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#endif
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s=fname.substr(0,uscore);
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}
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#ifdef VERBOSE
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else
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cout << "******************************** cannot parse position index" << endl;
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cout << s << endl;
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#endif
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uscore=s.rfind("_");
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if (sscanf( s.substr(uscore+1,s.size()-uscore-1).c_str(),"s%f",&f)) {
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sv1=f;
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#ifdef VERBOSE
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cout << "******************************** scan variable 1 is " << sv1 << endl;
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#endif
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s=fname.substr(0,uscore);
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}
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#ifdef VERBOSE
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else
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cout << "******************************** cannot parse scan varable 1" << endl;
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cout << s << endl;
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#endif
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uscore=s.rfind("_");
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if (sscanf( s.substr(uscore+1,s.size()-uscore-1).c_str(),"S%f",&f)) {
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sv0=f;
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#ifdef VERBOSE
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cout << "******************************** scan variable 0 is " << sv0 << endl;
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#endif
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}
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#ifdef VERBOSE
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else
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cout << "******************************** cannot parse scan varable 0" << endl;
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#endif
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return index;
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}
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int slsDetectorUtils::flatFieldCorrect(float datain, float errin, float &dataout, float &errout, float ffcoefficient, float fferr){
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float e;
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dataout=datain*ffcoefficient;
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if (errin==0 && datain>=0)
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e=sqrt(datain);
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else
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e=errin;
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if (dataout>0)
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errout=sqrt(e*ffcoefficient*e*ffcoefficient+datain*fferr*datain*fferr);
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else
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errout=1.;
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return 0;
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};
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int slsDetectorUtils::rateCorrect(float datain, float errin, float &dataout, float &errout, float tau, float t){
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// float data;
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float e;
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dataout=(datain*exp(tau*datain/t));
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if (errin==0 && datain>=0)
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e=sqrt(datain);
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else
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e=errin;
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if (dataout>0)
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errout=e*dataout*sqrt((1/(datain*datain)+tau*tau/(t*t)));
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else
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errout=1.;
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return 0;
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};
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int slsDetectorUtils::setBadChannelCorrection(string fname, int &nbad, int *badlist){
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ifstream infile;
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string str;
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int interrupt=0;
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int ich;
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int chmin,chmax;
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#ifdef VERBOSE
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std::cout << "Setting bad channel correction to " << fname << std::endl;
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#endif
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if (fname=="") {
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nbad=0;
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return 0;
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} else {
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infile.open(fname.c_str(), ios_base::in);
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if (infile.is_open()==0) {
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std::cout << "could not open file " << fname <<std::endl;
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return -1;
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}
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nbad=0;
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while (infile.good() and interrupt==0) {
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getline(infile,str);
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#ifdef VERBOSE
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std::cout << str << std::endl;
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#endif
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istringstream ssstr;
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ssstr.str(str);
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if (ssstr.bad() || ssstr.fail() || infile.eof()) {
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interrupt=1;
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break;
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}
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if (str.find('-')!=string::npos) {
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ssstr >> chmin ;
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ssstr.str(str.substr(str.find('-')+1,str.size()));
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ssstr >> chmax;
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#ifdef VERBOSE
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std::cout << "channels between"<< chmin << " and " << chmax << std::endl;
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#endif
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for (ich=chmin; ich<=chmax; ich++) {
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if (nbad<MAX_BADCHANS) {
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badlist[nbad]=ich;
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nbad++;
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#ifdef VERBOSE
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std::cout<< nbad << " Found bad channel "<< ich << std::endl;
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#endif
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} else
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interrupt=1;
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}
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} else {
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ssstr >> ich;
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#ifdef VERBOSE
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std::cout << "channel "<< ich << std::endl;
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#endif
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if (nbad<MAX_BADCHANS) {
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badlist[nbad]=ich;
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nbad++;
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#ifdef VERBOSE
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std::cout << nbad << " Found bad channel "<< ich << std::endl;
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#endif
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} else
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interrupt=1;
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}
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}
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}
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infile.close();
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if (nbad>0 && nbad<MAX_BADCHANS) {
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return 1;
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} else
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return 0;
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}
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int slsDetectorUtils::readAngularConversion(string fname, int nmod, angleConversionConstant *angOff) {
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ifstream infile;
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int mod;
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float center, ecenter;
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float r_conv, er_conv;
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float off, eoff;
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string ss;
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int interrupt=0;
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//" module %i center %E +- %E conversion %E +- %E offset %f +- %f \n"
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#ifdef VERBOSE
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std::cout<< "Opening file "<< fname << std::endl;
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#endif
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infile.open(fname.c_str(), ios_base::in);
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if (infile.is_open()) {
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readAngularConversion(infile, nmod, angOff);
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infile.close();
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} else {
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std::cout<< "Could not open calibration file "<< fname << std::endl;
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return -1;
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}
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return 0;
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}
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int slsDetectorUtils::readAngularConversion( ifstream& infile, int nmod, angleConversionConstant *angOff) {
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string str;
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int mod;
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float center, ecenter;
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float r_conv, er_conv;
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float off, eoff;
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string ss;
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int interrupt=0;
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int nm=0;
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//" module %i center %E +- %E conversion %E +- %E offset %f +- %f \n"
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while (infile.good() and interrupt==0) {
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getline(infile,str);
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#ifdef VERBOSE
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std::cout<< str << std::endl;
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#endif
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istringstream ssstr(str);
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ssstr >> ss >> mod;
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ssstr >> ss >> center;
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ssstr >> ss >> ecenter;
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ssstr >> ss >> r_conv;
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ssstr >> ss >> er_conv;
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ssstr >> ss >> off;
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ssstr >> ss >> eoff;
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if (mod<nmod && mod>=0) {
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angOff[mod].center=center;
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angOff[mod].r_conversion=r_conv;
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angOff[mod].offset=off;
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angOff[mod].ecenter=ecenter;
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angOff[mod].er_conversion=er_conv;
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angOff[mod].eoffset=eoff;
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nm++;
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}
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}
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return nm;
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}
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int slsDetectorUtils:: writeAngularConversion(string fname, int nmod, angleConversionConstant *angOff) {
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ofstream outfile;
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outfile.open (fname.c_str(),ios_base::out);
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if (outfile.is_open())
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{
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writeAngularConversion(outfile, nmod, angOff);
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outfile.close();
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} else {
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std::cout<< "Could not open file " << fname << "for writing"<< std::endl;
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return -1;
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}
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//" module %i center %E +- %E conversion %E +- %E offset %f +- %f \n"
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return 0;
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}
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int slsDetectorUtils:: writeAngularConversion(ofstream& outfile, int nmod, angleConversionConstant *angOff) {
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for (int imod=0; imod<nmod; imod++) {
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outfile << " module " << imod << " center "<< angOff[imod].center<<" +- "<< angOff[imod].ecenter<<" conversion "<< angOff[imod].r_conversion << " +- "<< angOff[imod].er_conversion << " offset "<< angOff[imod].offset << " +- "<< angOff[imod].eoffset << std::endl;
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}
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return 0;
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}
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int slsDetectorUtils::resetMerging(float *mp, float *mv, float *me, int *mm, float binsize) {
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for (int ibin=0; ibin<(360./binsize); ibin++) {
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mp[ibin]=0;
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mv[ibin]=0;
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me[ibin]=0;
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mm[ibin]=0;
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}
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return OK;
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}
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int slsDetectorUtils::finalizeMerging(float *mp, float *mv, float *me, int *mm, float binsize) {
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int np=0;
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for (int ibin=0; ibin<(360./binsize); ibin++) {
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if (mm[ibin]>0) {
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mp[np]=mp[ibin]/mm[ibin];
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mv[np]=mv[ibin]/mm[ibin];
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me[np]=me[ibin]/mm[ibin];
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me[np]=sqrt(me[ibin]);
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mm[np]=mm[ibin];
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np++;
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}
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}
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return np;
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}
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int slsDetectorUtils::addToMerging(float *p1, float *v1, float *e1, float *mp, float *mv,float *me, int *mm, int nchans, float binsize,int angDir, int cm, int *badChanMask ) {
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float binmi=-180., binma;
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int ibin=0;
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int imod;
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float ang=0;
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binmi=-180.;
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binma=binmi+binsize;
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if (angDir>0) {
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for (int ip=0; ip<nchans; ip++) {
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if ((cm)&(1<< DISCARD_BAD_CHANNELS)) {
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if (badChanMask[ip]) {
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continue;
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}
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}
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ang=p1[ip];
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while (binma<ang) {
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ibin++;
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binmi+=binsize;
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binma+=binsize;
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}
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if (ibin<(360./binsize)) {
|
|
mp[ibin]+=ang;
|
|
mv[ibin]+=v1[ip];
|
|
if (e1)
|
|
me[ibin]+=(e1[ip]*e1[ip]);
|
|
else
|
|
me[ibin]+=v1[ip];
|
|
mm[ibin]++;
|
|
} else
|
|
return FAIL;
|
|
}
|
|
|
|
} else {
|
|
for (int ip=nchans-1; ip>=0; ip--) {
|
|
if ((cm)&(1<< DISCARD_BAD_CHANNELS)) {
|
|
if (badChanMask[ip])
|
|
continue;
|
|
|
|
}
|
|
|
|
while (binma<ang) {
|
|
ibin++;
|
|
binmi+=binsize;
|
|
binma+=binsize;
|
|
}
|
|
if (ibin<(360./binsize)) {
|
|
mp[ibin]+=ang;
|
|
mv[ibin]+=v1[ip];
|
|
if (e1)
|
|
me[ibin]+=(e1[ip]*e1[ip]);
|
|
else
|
|
me[ibin]+=v1[ip];
|
|
mm[ibin]++;
|
|
} else
|
|
return FAIL;
|
|
}
|
|
}
|
|
return OK;
|
|
|
|
}
|
|
|
|
|
|
|
|
int slsDetectorUtils::resetMerging(float *mp, float *mv, float *me, int *mm) {
|
|
|
|
float binsize;
|
|
if (*binSize>0)
|
|
binsize=*binSize;
|
|
else
|
|
return FAIL;
|
|
|
|
return resetMerging(mp, mv, me, mm, binsize);
|
|
}
|
|
|
|
|
|
int slsDetectorUtils::finalizeMerging(float *mp, float *mv, float *me, int *mm) {
|
|
float binsize;
|
|
|
|
if (*binSize>0)
|
|
binsize=*binSize;
|
|
else
|
|
return FAIL;
|
|
|
|
return finalizeMerging(mp, mv, me, mm, binsize);
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
int slsDetectorUtils::addToMerging(float *p1, float *v1, float *e1, float *mp, float *mv,float *me, int *mm) {
|
|
|
|
float binsize;
|
|
|
|
|
|
|
|
int ibin=0;
|
|
int imod;
|
|
|
|
int del=0;
|
|
|
|
if (*binSize>0)
|
|
binsize=*binSize;
|
|
else
|
|
return FAIL;
|
|
|
|
if (p1==NULL) {
|
|
|
|
del=1;
|
|
p1=convertAngles(currentPosition);
|
|
|
|
}
|
|
|
|
int ret=addToMerging(p1, v1, e1, mp, mv,me, mm,getTotalNumberOfChannels(), binsize,*angDirection, *correctionMask, badChannelMask );
|
|
|
|
|
|
if (del) {
|
|
delete [] p1;
|
|
p1=NULL;
|
|
}
|
|
return ret;
|
|
}
|
|
|
|
|
|
|
|
|
|
int slsDetectorUtils::writeDataFile(string fname, int nch, float *data, float *err, float *ang, char dataformat){
|
|
|
|
|
|
ofstream outfile;
|
|
int idata;
|
|
if (data==NULL)
|
|
return FAIL;
|
|
|
|
// args|=0x10; // one line per channel!
|
|
|
|
outfile.open (fname.c_str(),ios_base::out);
|
|
if (outfile.is_open())
|
|
{
|
|
writeDataFile(outfile, nch, data, err, ang, dataformat);
|
|
return OK;
|
|
} else {
|
|
std::cout<< "Could not open file " << fname << "for writing"<< std::endl;
|
|
return FAIL;
|
|
}
|
|
};
|
|
|
|
|
|
int slsDetectorUtils::writeDataFile(ofstream &outfile, int nch, float *data, float *err, float *ang, char dataformat){
|
|
|
|
|
|
int idata;
|
|
if (data==NULL)
|
|
return FAIL;
|
|
|
|
// args|=0x10; // one line per channel!
|
|
|
|
|
|
for (int ichan=0; ichan<nch; ichan++) {
|
|
if (ang==NULL) {
|
|
outfile << ichan << " ";
|
|
} else {
|
|
outfile << ang[ichan] << " ";
|
|
}
|
|
|
|
switch (dataformat) {
|
|
case 'f':
|
|
outfile << *(data+ichan)<< " ";
|
|
break;
|
|
case 'i':
|
|
default:
|
|
idata=(int)(*(data+ichan));
|
|
outfile << idata << " ";
|
|
}
|
|
if (err) {
|
|
outfile << *(err+ichan)<< " ";
|
|
}
|
|
// if (args&0x10) {
|
|
outfile << std::endl;
|
|
// }
|
|
}
|
|
|
|
outfile.close();
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
/*writes raw data file */
|
|
int slsDetectorUtils::writeDataFile(string fname, int nch, int *data){
|
|
ofstream outfile;
|
|
if (data==NULL)
|
|
return FAIL;
|
|
|
|
outfile.open (fname.c_str(),ios_base::out);
|
|
if (outfile.is_open())
|
|
{
|
|
writeDataFile(outfile, nch, data);
|
|
outfile.close();
|
|
return OK;
|
|
} else {
|
|
std::cout<< "Could not open file " << fname << "for writing"<< std::endl;
|
|
return FAIL;
|
|
}
|
|
};
|
|
|
|
/*writes raw data file */
|
|
int slsDetectorUtils::writeDataFile(ofstream &outfile, int nch, int *data){
|
|
if (data==NULL)
|
|
return FAIL;
|
|
|
|
#ifdef VERBOSE
|
|
std::cout<< "Writing to file " << fname << std::endl;
|
|
#endif
|
|
for (int ichan=0; ichan<nch; ichan++)
|
|
outfile << ichan << " " << *(data+ichan) << std::endl;
|
|
|
|
};
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
int slsDetectorUtils::readDataFile(int nch, string fname, float *data, float *err, float *ang, char dataformat){
|
|
|
|
|
|
ifstream infile;
|
|
int ichan, iline=0;
|
|
int interrupt=0;
|
|
float fdata, ferr, fang;
|
|
int maxchans;
|
|
int ich;
|
|
string str;
|
|
|
|
|
|
maxchans=nch;
|
|
|
|
#ifdef VERBOSE
|
|
std::cout<< "Opening file "<< fname << std::endl;
|
|
#endif
|
|
infile.open(fname.c_str(), ios_base::in);
|
|
if (infile.is_open()) {
|
|
while (infile.good() and interrupt==0) {
|
|
getline(infile,str);
|
|
#ifdef VERBOSE
|
|
std::cout<< str << std::endl;
|
|
#endif
|
|
istringstream ssstr(str);
|
|
if (ang==NULL) {
|
|
ssstr >> ichan >> fdata;
|
|
ich=ichan;
|
|
if (ssstr.fail() || ssstr.bad()) {
|
|
interrupt=1;
|
|
break;
|
|
}
|
|
if (ich!=iline)
|
|
std::cout<< "Channel number " << ichan << " does not match with line number " << iline << " " << dataformat << std::endl;
|
|
} else {
|
|
ssstr >> fang >> fdata;
|
|
ich=iline;
|
|
}
|
|
if (ssstr.fail() || ssstr.bad()) {
|
|
interrupt=1;
|
|
break;
|
|
}
|
|
if (err)
|
|
ssstr >> ferr;
|
|
if (ssstr.fail() || ssstr.bad()) {
|
|
interrupt=1;
|
|
break;
|
|
}
|
|
if (ich<maxchans) {
|
|
if (ang) {
|
|
ang[ich]=fang;
|
|
}
|
|
data[ich]=fdata;
|
|
if (err)
|
|
err[ich]=ferr;
|
|
iline++;
|
|
} else {
|
|
std::cout<< " too many lines in file: "<< iline << " instead of " << maxchans << std::endl;
|
|
interrupt=1;
|
|
break;
|
|
}
|
|
}
|
|
infile.close();
|
|
} else {
|
|
std::cout<< "Could not read file " << fname << std::endl;
|
|
return -1;
|
|
}
|
|
return iline;
|
|
};
|
|
|
|
|
|
|
|
int slsDetectorUtils::readDataFile(string fname, int *data, int nch){
|
|
|
|
ifstream infile;
|
|
int ichan, idata, iline=0;
|
|
int interrupt=0;
|
|
string str;
|
|
|
|
#ifdef VERBOSE
|
|
std::cout<< "Opening file "<< fname << std::endl;
|
|
#endif
|
|
infile.open(fname.c_str(), ios_base::in);
|
|
if (infile.is_open()) {
|
|
while (infile.good() and interrupt==0) {
|
|
getline(infile,str);
|
|
#ifdef VERBOSE
|
|
std::cout<< str << std::endl;
|
|
#endif
|
|
istringstream ssstr(str);
|
|
ssstr >> ichan >> idata;
|
|
if (ssstr.fail() || ssstr.bad()) {
|
|
interrupt=1;
|
|
break;
|
|
}
|
|
if (ichan!=iline) {
|
|
std::cout<< " Expected channel "<< iline <<" but read channel "<< ichan << std::endl;
|
|
interrupt=1;
|
|
break;
|
|
} else {
|
|
if (iline<nch) {
|
|
data[iline]=idata;
|
|
iline++;
|
|
} else {
|
|
interrupt=1;
|
|
break;
|
|
}
|
|
}
|
|
}
|
|
infile.close();
|
|
} else {
|
|
std::cout<< "Could not read file " << fname << std::endl;
|
|
return -1;
|
|
}
|
|
return iline;
|
|
};
|
|
|
|
|
|
|
|
|
|
/*writes raw data file */
|
|
|
|
int slsDetectorUtils::writeDataFile(string fname, float *data, float *err, float *ang, char dataformat, int nch){
|
|
if (nch==-1)
|
|
nch=getTotalNumberOfChannels();
|
|
|
|
return writeDataFile(fname, nch, data, err, ang, dataformat);
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
int slsDetectorUtils::writeDataFile(string fname, int *data){
|
|
|
|
return writeDataFile(fname, getTotalNumberOfChannels(), data);
|
|
}
|
|
|
|
|
|
|
|
int slsDetectorUtils::readDataFile(string fname, float *data, float *err, float *ang, char dataformat) {
|
|
return readDataFile(getTotalNumberOfChannels(), fname, data, err, ang, dataformat);
|
|
|
|
}
|
|
|
|
|
|
|
|
int slsDetectorUtils::readDataFile(string fname, int *data){
|
|
|
|
return readDataFile(fname, data, getTotalNumberOfChannels());
|
|
};
|
|
|
|
|
|
|
|
|
|
|
|
int slsDetectorUtils::readCalibrationFile(string fname, float &gain, float &offset){
|
|
|
|
string str;
|
|
ifstream infile;
|
|
#ifdef VERBOSE
|
|
std::cout<< "Opening file "<< fname << std::endl;
|
|
#endif
|
|
infile.open(fname.c_str(), ios_base::in);
|
|
if (infile.is_open()) {
|
|
getline(infile,str);
|
|
#ifdef VERBOSE
|
|
std::cout<< str << std::endl;
|
|
#endif
|
|
istringstream ssstr(str);
|
|
ssstr >> offset >> gain;
|
|
infile.close();
|
|
} else {
|
|
std::cout<< "Could not open calibration file "<< fname << std::endl;
|
|
gain=0.;
|
|
offset=0.;
|
|
return -1;
|
|
}
|
|
return 0;
|
|
};
|
|
|
|
int slsDetectorUtils::writeCalibrationFile(string fname, float gain, float offset){
|
|
//std::cout<< "Function not yet implemented " << std::endl;
|
|
ofstream outfile;
|
|
|
|
outfile.open (fname.c_str());
|
|
|
|
// >> i/o operations here <<
|
|
if (outfile.is_open()) {
|
|
outfile << offset << " " << gain << std::endl;
|
|
} else {
|
|
std::cout<< "Could not open calibration file "<< fname << " for writing" << std::endl;
|
|
return -1;
|
|
}
|
|
|
|
outfile.close();
|
|
|
|
return 0;
|
|
};
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
void slsDetectorUtils::acquire(int delflag){
|
|
|
|
|
|
|
|
void *status;
|
|
int trimbit;
|
|
|
|
|
|
|
|
|
|
char cmd[MAX_STR_LENGTH];
|
|
int startindex=*fileIndex;
|
|
int nowindex=startindex, lastindex=startindex;
|
|
string fn;
|
|
|
|
|
|
|
|
|
|
//string sett;
|
|
if ((*correctionMask&(1<< ANGULAR_CONVERSION)) || (*correctionMask&(1<< I0_NORMALIZATION)))
|
|
connect_channels();
|
|
|
|
|
|
|
|
|
|
progressIndex=0;
|
|
*stoppedFlag=0;
|
|
|
|
|
|
|
|
resetFinalDataQueue();
|
|
resetDataQueue();
|
|
|
|
|
|
//cout << "main mutex lock line 6188" << endl;
|
|
pthread_mutex_lock(&mp);
|
|
jointhread=0;
|
|
queuesize=0;
|
|
pthread_mutex_unlock(&mp);
|
|
//cout << "main mutex unlock line 6188" << endl;
|
|
|
|
|
|
|
|
|
|
|
|
if (*threadedProcessing) {
|
|
startThread(delflag);
|
|
}
|
|
|
|
|
|
|
|
|
|
//cout << "data thread started " << endl;
|
|
int np=1;
|
|
if (*numberOfPositions>0)
|
|
np=*numberOfPositions;
|
|
|
|
int ns0=1;
|
|
if (*actionMask & (1 << MAX_ACTIONS)) {
|
|
ns0=nScanSteps[0];
|
|
}
|
|
if (ns0<1)
|
|
ns0=1;
|
|
|
|
|
|
int ns1=1;
|
|
if (*actionMask & (1 << (MAX_ACTIONS+1))) {
|
|
ns1=nScanSteps[1];
|
|
}
|
|
if (ns1<1)
|
|
ns1=1;
|
|
|
|
|
|
|
|
|
|
//cout << "action at start" << endl;
|
|
if (stoppedFlag==0) {
|
|
if (*actionMask & (1 << startScript)) {
|
|
//"Custom start script. The arguments are passed as nrun=n par=p.");
|
|
sprintf(cmd,"%s nrun=%d par=%s",getActionScript(startScript).c_str(),*fileIndex,getActionParameter(startScript).c_str());
|
|
#ifdef VERBOSE
|
|
cout << "Executing start script " << cmd << endl;
|
|
#endif
|
|
system(cmd);
|
|
}
|
|
}
|
|
|
|
for (int is0=0; is0<ns0; is0++) {
|
|
// cout << "scan0 loop" << endl;
|
|
|
|
if (*stoppedFlag==0) {
|
|
|
|
currentScanVariable[0]=getScanStep(0,is0);
|
|
currentScanIndex[0]=is0;
|
|
|
|
switch(scanMode[0]) {
|
|
case 1:
|
|
setThresholdEnergy((int)currentScanVariable[0]); //energy scan
|
|
break;
|
|
case 2:
|
|
setDAC(currentScanVariable[0],THRESHOLD); // threshold scan
|
|
break;
|
|
case 3:
|
|
trimbit=(int)currentScanVariable[0];
|
|
setChannel((trimbit<<((int)TRIMBIT_OFF))|((int)COMPARATOR_ENABLE)); // trimbit scan
|
|
break;
|
|
case 0:
|
|
currentScanVariable[0]=0;
|
|
break;
|
|
default:
|
|
//Custom scan script level 0. The arguments are passed as nrun=n fn=filename var=v par=p"
|
|
sprintf(cmd,"%s nrun=%d fn=%s var=%f par=%s",getScanScript(0).c_str(),*fileIndex,createFileName().c_str(),currentScanVariable[0],getScanParameter(0).c_str());
|
|
#ifdef VERBOSE
|
|
cout << "Executing scan script 0 " << cmd << endl;
|
|
#endif
|
|
system(cmd);
|
|
|
|
|
|
}
|
|
} else
|
|
break;
|
|
|
|
|
|
for (int is1=0; is1<ns1; is1++) {
|
|
// cout << "scan1 loop" << endl;
|
|
|
|
if (*stoppedFlag==0) {
|
|
|
|
currentScanVariable[1]=getScanStep(1,is1);
|
|
currentScanIndex[1]=is1;
|
|
|
|
switch(scanMode[1]) {
|
|
case 1:
|
|
setThresholdEnergy((int)currentScanVariable[1]); //energy scan
|
|
break;
|
|
case 2:
|
|
setDAC(currentScanVariable[1],THRESHOLD); // threshold scan
|
|
break;
|
|
case 3:
|
|
trimbit=(int)currentScanVariable[1];
|
|
setChannel((trimbit<<((int)TRIMBIT_OFF))|((int)COMPARATOR_ENABLE)); // trimbit scan
|
|
break;
|
|
case 0:
|
|
currentScanVariable[1]=0;
|
|
break;
|
|
default:
|
|
//Custom scan script level 1. The arguments are passed as nrun=n fn=filename var=v par=p"
|
|
sprintf(cmd,"%s nrun=%d fn=%s var=%f par=%s",getScanScript(1).c_str(),*fileIndex,createFileName().c_str(),currentScanVariable[1],getScanParameter(1).c_str());
|
|
#ifdef VERBOSE
|
|
cout << "Executing scan script 1 " << cmd << endl;
|
|
#endif
|
|
system(cmd);
|
|
}
|
|
|
|
} else
|
|
break;
|
|
|
|
if (stoppedFlag==0) {
|
|
if (*actionMask & (1 << scriptBefore)) {
|
|
//Custom script before each frame. The arguments are passed as nrun=n fn=filename par=p sv0=scanvar0 sv1=scanvar1 p0=par0 p1=par1"
|
|
sprintf(cmd,"%s nrun=%d fn=%s par=%s sv0=%f sv1=%f p0=%s p1=%s",getActionScript(scriptBefore).c_str(),*fileIndex,createFileName().c_str(),getActionParameter(scriptBefore).c_str(),currentScanVariable[0],currentScanVariable[1],getScanParameter(0).c_str(),getScanParameter(1).c_str());
|
|
#ifdef VERBOSE
|
|
cout << "Executing script before " << cmd << endl;
|
|
#endif
|
|
system(cmd);
|
|
}
|
|
} else
|
|
break;
|
|
|
|
currentPositionIndex=0;
|
|
|
|
for (int ip=0; ip<np; ip++) {
|
|
// cout << "positions " << endl;
|
|
if (stoppedFlag==0) {
|
|
if (*numberOfPositions>0) {
|
|
go_to_position (detPositions[ip]);
|
|
currentPositionIndex=ip+1;
|
|
#ifdef VERBOSE
|
|
std::cout<< "moving to position" << std::endl;
|
|
#endif
|
|
}
|
|
} else
|
|
break;
|
|
|
|
//write header before?
|
|
//cmd=headerBeforeScript;
|
|
//Custom script to write the header. \n The arguments will be passed as nrun=n fn=filenam acqtime=t gainmode=g threshold=thr badfile=badf angfile=angf bloffset=blo fineoffset=fo fffile=fffn tau=deadtau par=p")
|
|
|
|
// cout << "aaaaa" << endl;
|
|
//cout << createFileName() << endl;
|
|
//cout << "bbbbb" << endl;
|
|
fn=createFileName();
|
|
//cout << fn << endl;
|
|
nowindex=*fileIndex;
|
|
|
|
if (*stoppedFlag==0) {
|
|
|
|
|
|
if (*correctionMask&(1<< I0_NORMALIZATION))
|
|
currentI0=get_i0();
|
|
|
|
// cout << "header " << endl;
|
|
if (*actionMask & (1 << headerBefore)) {
|
|
//Custom script after each frame. The arguments are passed as nrun=n fn=filename par=p sv0=scanvar0 sv1=scanvar1 p0=par0 p1=par1"
|
|
sprintf(cmd,"%s nrun=%d fn=%s acqtime=%f gainmode=%d threshold=%d badfile=%s angfile=%s bloffset=%f fineoffset=%f fffile=%s/%s tau=%f par=%s",\
|
|
getActionScript(headerBefore).c_str(),\
|
|
nowindex,\
|
|
fn.c_str(), \
|
|
((float)timerValue[ACQUISITION_TIME])*1E-9, \
|
|
*currentSettings, \
|
|
*currentThresholdEV, \
|
|
getBadChannelCorrectionFile().c_str(), \
|
|
getAngularConversion().c_str(), \
|
|
*globalOffset, \
|
|
*fineOffset,\
|
|
getFlatFieldCorrectionDir(),\
|
|
getFlatFieldCorrectionFile(), \
|
|
getRateCorrectionTau(),\
|
|
getActionParameter(headerBefore).c_str()\
|
|
);
|
|
#ifdef VERBOSE
|
|
cout << "Executing header before " << cmd << endl;
|
|
#endif
|
|
system(cmd);
|
|
}
|
|
} else
|
|
break;
|
|
|
|
|
|
|
|
if (*stoppedFlag==0) {
|
|
|
|
// cout << "starting???? " << endl;
|
|
startAndReadAll();
|
|
|
|
if (*correctionMask&(1<< ANGULAR_CONVERSION))
|
|
currentPosition=get_position();
|
|
|
|
if (*correctionMask&(1<< I0_NORMALIZATION))
|
|
currentI0=get_i0()-currentI0;
|
|
|
|
////////////////// Reput in in case of unthreaded processing
|
|
// if (*threadedProcessing==0)
|
|
// processData(delflag);
|
|
|
|
|
|
} else
|
|
break;
|
|
|
|
pthread_mutex_lock(&mp);
|
|
while (queuesize){
|
|
pthread_mutex_unlock(&mp);
|
|
usleep(10000);
|
|
pthread_mutex_lock(&mp);
|
|
}
|
|
pthread_mutex_unlock(&mp);
|
|
|
|
if (stoppedFlag==0) {
|
|
if (*actionMask & (1 << headerAfter)) {
|
|
//Custom script after each frame. The arguments are passed as nrun=n fn=filename par=p sv0=scanvar0 sv1=scanvar1 p0=par0 p1=par1"
|
|
sprintf(cmd,"%s nrun=%d fn=%s acqtime=%f gainmode=%d threshold=%d badfile=%s angfile=%s bloffset=%f fineoffset=%f fffile=%s/%s tau=%f par=%s", \
|
|
getActionScript(headerAfter).c_str(), \
|
|
nowindex, \
|
|
fn.c_str(), \
|
|
((float)timerValue[ACQUISITION_TIME])*1E-9, \
|
|
*currentSettings, \
|
|
*currentThresholdEV, \
|
|
getBadChannelCorrectionFile().c_str(), \
|
|
getAngularConversion().c_str(), \
|
|
*globalOffset, \
|
|
*fineOffset, \
|
|
getFlatFieldCorrectionDir(), \
|
|
getFlatFieldCorrectionFile(), \
|
|
getRateCorrectionTau(), \
|
|
getActionParameter(headerAfter).c_str());
|
|
#ifdef VERBOSE
|
|
cout << "Executing header after " << cmd << endl;
|
|
#endif
|
|
system(cmd);
|
|
|
|
}
|
|
if (*fileIndex>lastindex)
|
|
lastindex=*fileIndex;
|
|
} else {
|
|
|
|
|
|
if (*fileIndex>lastindex)
|
|
lastindex=*fileIndex;
|
|
|
|
break;
|
|
}
|
|
|
|
|
|
|
|
if (*stoppedFlag) {
|
|
#ifdef VERBOSE
|
|
std::cout<< "exiting since the detector has been stopped" << std::endl;
|
|
#endif
|
|
break;
|
|
} else if (ip<(np-1)) {
|
|
*fileIndex=startindex;
|
|
}
|
|
} // loop on position finished
|
|
|
|
//script after
|
|
if (*stoppedFlag==0) {
|
|
if (*actionMask & (1 << scriptAfter)) {
|
|
//Custom script after each frame. The arguments are passed as nrun=n fn=filename par=p sv0=scanvar0 sv1=scanvar1 p0=par0 p1=par1"
|
|
sprintf(cmd,"%s nrun=%d fn=%s par=%s sv0=%f sv1=%f p0=%s p1=%s",getActionScript(scriptAfter).c_str(),*fileIndex,createFileName().c_str(),getActionParameter(scriptAfter).c_str(),currentScanVariable[0],currentScanVariable[1],getScanParameter(0).c_str(),getScanParameter(1).c_str());
|
|
#ifdef VERBOSE
|
|
cout << "Executing script after " << cmd << endl;
|
|
#endif
|
|
system(cmd);
|
|
}
|
|
} else
|
|
break;
|
|
|
|
|
|
if (*stoppedFlag) {
|
|
#ifdef VERBOSE
|
|
std::cout<< "exiting since the detector has been stopped" << std::endl;
|
|
#endif
|
|
break;
|
|
} else if (is1<(ns1-1)) {
|
|
*fileIndex=startindex;
|
|
}
|
|
|
|
|
|
}
|
|
|
|
//end scan1 loop is1
|
|
//currentScanVariable[MAX_SCAN_LEVELS];
|
|
|
|
|
|
if (*stoppedFlag) {
|
|
#ifdef VERBOSE
|
|
std::cout<< "exiting since the detector has been stopped" << std::endl;
|
|
#endif
|
|
break;
|
|
} else if (is0<(ns0-1)) {
|
|
*fileIndex=startindex;
|
|
}
|
|
} //end scan0 loop is0
|
|
|
|
*fileIndex=lastindex;
|
|
if (*stoppedFlag==0) {
|
|
if (*actionMask & (1 << stopScript)) {
|
|
//Custom stop script. The arguments are passed as nrun=n par=p.
|
|
sprintf(cmd,"%s nrun=%d par=%s",getActionScript(stopScript).c_str(),*fileIndex,getActionParameter(stopScript).c_str());
|
|
#ifdef VERBOSE
|
|
cout << "Executing stop script " << cmd << endl;
|
|
#endif
|
|
system(cmd);
|
|
}
|
|
}
|
|
|
|
|
|
if (*threadedProcessing) {
|
|
//#ifdef VERBOSE
|
|
// std::cout<< " ***********************waiting for data processing thread to finish " << queuesize <<" " << thisDetector->fileIndex << std::endl ;
|
|
//#endif
|
|
//cout << "main mutex lock line 6488" << endl;
|
|
pthread_mutex_lock(&mp);
|
|
jointhread=1;
|
|
pthread_mutex_unlock(&mp);
|
|
//cout << "main mutex unlock line 6488" << endl;
|
|
pthread_join(dataProcessingThread, &status);
|
|
// std::cout<< " ***********************data processing finished " << queuesize <<" " << thisDetector->fileIndex << std::endl ;
|
|
}
|
|
|
|
if ((*correctionMask&(1<< ANGULAR_CONVERSION)) || (*correctionMask&(1<< I0_NORMALIZATION)))
|
|
disconnect_channels();
|
|
}
|
|
|
|
|
|
void* slsDetectorUtils::processData(int delflag) {
|
|
|
|
|
|
//cout << "thread mutex lock line 6505" << endl;
|
|
pthread_mutex_lock(&mp);
|
|
queuesize=dataQueue.size();
|
|
pthread_mutex_unlock(&mp);
|
|
//cout << "thread mutex unlock line 6505" << endl;
|
|
|
|
int *myData;
|
|
float *fdata;
|
|
float *rcdata=NULL, *rcerr=NULL;
|
|
float *ffcdata=NULL, *ffcerr=NULL;
|
|
float *ang=NULL;
|
|
float bs=0.004;
|
|
int imod;
|
|
int nb;
|
|
int np;
|
|
detectorData *thisData;
|
|
int dum=1;
|
|
string ext;
|
|
string fname;
|
|
|
|
|
|
#ifdef ACQVERBOSE
|
|
std::cout<< " processing data - threaded mode " << *threadedProcessing;
|
|
#endif
|
|
|
|
if (*correctionMask!=0) {
|
|
ext=".dat";
|
|
} else {
|
|
ext=".raw";
|
|
}
|
|
while(dum | *threadedProcessing) { // ????????????????????????
|
|
|
|
|
|
// while( !dataQueue.empty() ) {
|
|
//cout << "thread mutex lock line 6539" << endl;
|
|
pthread_mutex_lock(&mp);
|
|
while((queuesize=dataQueue.size())>0) {
|
|
pthread_mutex_unlock(&mp);
|
|
//cout << "thread mutex unlock line 6543" << endl;
|
|
//queuesize=dataQueue.size();
|
|
|
|
/** Pop data queue */
|
|
myData=dataQueue.front(); // get the data from the queue
|
|
if (myData) {
|
|
|
|
|
|
|
|
progressIndex++;
|
|
#ifdef VERBOSE
|
|
cout << "Progress is " << getCurrentProgress() << " \%" << endl;
|
|
#endif
|
|
|
|
//process data
|
|
/** decode data */
|
|
fdata=decodeData(myData);
|
|
|
|
fname=createFileName();
|
|
|
|
/** write raw data file */
|
|
if (*correctionMask==0 && delflag==1) {
|
|
//cout << "line 6570----" << endl;
|
|
writeDataFile (fname+string(".raw"), getTotalNumberOfChannels(),fdata, NULL, NULL, 'i');
|
|
delete [] fdata;
|
|
} else {
|
|
//cout << "line 6574----" << endl;
|
|
writeDataFile (fname+string(".raw"), getTotalNumberOfChannels(),fdata, NULL, NULL, 'i');
|
|
|
|
/** rate correction */
|
|
if (*correctionMask&(1<<RATE_CORRECTION)) {
|
|
rcdata=new float[getTotalNumberOfChannels()];
|
|
rcerr=new float[getTotalNumberOfChannels()];
|
|
rateCorrect(fdata,NULL,rcdata,rcerr);
|
|
delete [] fdata;
|
|
} else {
|
|
rcdata=fdata;
|
|
fdata=NULL;
|
|
}
|
|
|
|
/** flat field correction */
|
|
if (*correctionMask&(1<<FLAT_FIELD_CORRECTION)) {
|
|
|
|
ffcdata=new float[getTotalNumberOfChannels()];
|
|
ffcerr=new float[getTotalNumberOfChannels()];
|
|
flatFieldCorrect(rcdata,rcerr,ffcdata,ffcerr);
|
|
delete [] rcdata;
|
|
delete [] rcerr;
|
|
} else {
|
|
ffcdata=rcdata;
|
|
ffcerr=rcerr;
|
|
rcdata=NULL;
|
|
rcerr=NULL;
|
|
}
|
|
|
|
if (*correctionMask&(1<< ANGULAR_CONVERSION)) {
|
|
|
|
if (currentPositionIndex<=1) {
|
|
if (*binSize>0)
|
|
bs=*binSize;
|
|
//else // if (angOff[0].r_conversion>0) {
|
|
// bs=180./PI*atan(angOff[0].r_conversion);
|
|
// *binSize=bs;
|
|
// }
|
|
else
|
|
*binSize=bs;
|
|
|
|
|
|
nb=(int)(360./bs);
|
|
|
|
mergingBins=new float[nb];
|
|
mergingCounts=new float[nb];
|
|
mergingErrors=new float[nb];
|
|
mergingMultiplicity=new int[nb];
|
|
|
|
resetMerging(mergingBins, mergingCounts,mergingErrors, mergingMultiplicity, bs);
|
|
}
|
|
/* it would be better to create an ang0 with 0 encoder position and add to merging/write to file simply specifying that offset so that when it cycles writing the data or adding to merging it also calculates the angular position */
|
|
|
|
ang=convertAngles(currentPosition);
|
|
|
|
if (*correctionMask!=0) {
|
|
//cout << "line 6633----" << endl;
|
|
if (*numberOfPositions>1)
|
|
writeDataFile (fname+string(".dat"), getTotalNumberOfChannels(), ffcdata, ffcerr,ang);
|
|
}
|
|
addToMerging(ang, ffcdata, ffcerr, mergingBins, mergingCounts,mergingErrors, mergingMultiplicity, getTotalNumberOfChannels(), bs, *angDirection, *correctionMask, badChannelMask );
|
|
|
|
if ((currentPositionIndex==*numberOfPositions) || (currentPositionIndex==0)) {
|
|
np=finalizeMerging(mergingBins, mergingCounts,mergingErrors, mergingMultiplicity, bs);
|
|
/** file writing */
|
|
currentPositionIndex++;
|
|
fname=createFileName();
|
|
if (*correctionMask!=0) {
|
|
// cout << "line 6643----" << endl;
|
|
writeDataFile (fname+string(".dat"),np,mergingCounts, mergingErrors, mergingBins,'f');
|
|
}
|
|
if (delflag) {
|
|
delete [] mergingBins;
|
|
delete [] mergingCounts;
|
|
delete [] mergingErrors;
|
|
delete [] mergingMultiplicity;
|
|
} else {
|
|
thisData=new detectorData(mergingCounts,mergingErrors,mergingBins,getCurrentProgress(),(fname+string(ext)).c_str(),np);/*
|
|
if (thisDetector->*correctionMask!=0) {
|
|
//thisData=new detectorData(mergingCounts,mergingErrors,mergingBins,thisDetector->progressIndex+1,(fname().append(".dat")).c_str(),np);
|
|
thisData=new detectorData(mergingCounts,mergingErrors,mergingBins,getCurrentProgress(),(fname().append(".dat")).c_str(),np);
|
|
} else {
|
|
thisData=new detectorData(mergingCounts,mergingErrors,mergingBins,getCurrentProgress(),(fname().append(".raw")).c_str(),np);
|
|
//thisData=new detectorData(mergingCounts,mergingErrors,mergingBins,thisDetector->progressIndex+1,(fname().append(".raw")).c_str(),np);
|
|
}*/
|
|
finalDataQueue.push(thisData);
|
|
}
|
|
}
|
|
|
|
if (ffcdata)
|
|
delete [] ffcdata;
|
|
if (ffcerr)
|
|
delete [] ffcerr;
|
|
if (ang)
|
|
delete [] ang;
|
|
} else {
|
|
if (*correctionMask!=0) {
|
|
// cout << "line 6672----" << endl;
|
|
writeDataFile (fname+string(".dat"), getTotalNumberOfChannels(), ffcdata, ffcerr);
|
|
}
|
|
if (delflag) {
|
|
if (ffcdata)
|
|
delete [] ffcdata;
|
|
if (ffcerr)
|
|
delete [] ffcerr;
|
|
if (ang)
|
|
delete [] ang;
|
|
} else {
|
|
thisData=new detectorData(ffcdata,ffcerr,NULL,getCurrentProgress(),(fname+string(ext)).c_str(),getTotalNumberOfChannels());
|
|
|
|
/*
|
|
|
|
if (thisDetector->*correctionMask!=0) {
|
|
thisData=new detectorData(ffcdata,ffcerr,NULL,getCurrentProgress(),(fname().append(".dat")).c_str(),thisDetector->nChans*thisDetector->nChips*thisDetector->nMods);
|
|
//thisData=new detectorData(ffcdata,ffcerr,NULL,thisDetector->progressIndex+1,(fname().append(".dat")).c_str(),thisDetector->nChans*thisDetector->nChips*thisDetector->nMods);
|
|
} else {
|
|
thisData=new detectorData(ffcdata,ffcerr,NULL,getCurrentProgress(),(fname().append(".raw")).c_str(),thisDetector->nChans*thisDetector->nChips*thisDetector->nMods);
|
|
//thisData=new detectorData(ffcdata,ffcerr,NULL,thisDetector->progressIndex+1,(fname().append(".raw")).c_str(),thisDetector->nChans*thisDetector->nChips*thisDetector->nMods);
|
|
}
|
|
|
|
*/
|
|
|
|
finalDataQueue.push(thisData);
|
|
}
|
|
}
|
|
}
|
|
*fileIndex++;
|
|
|
|
/*
|
|
thisDetector->progressIndex++;
|
|
#ifdef VERBOSE
|
|
cout << "Progress is " << getCurrentProgress() << " \%" << endl;
|
|
#endif
|
|
*/
|
|
|
|
delete [] myData;
|
|
myData=NULL;
|
|
dataQueue.pop(); //remove the data from the queue
|
|
//cout << "thread mutex lock line 6697" << endl;
|
|
pthread_mutex_lock(&mp);
|
|
queuesize=dataQueue.size();
|
|
pthread_mutex_unlock(&mp);
|
|
//cout << "thread mutex unlock line 6697" << endl;
|
|
usleep(1000);
|
|
//pthread_mutex_unlock(&mp);
|
|
}
|
|
pthread_mutex_unlock(&mp);
|
|
//cout << "thread mutex unlock line 6706" << endl;
|
|
usleep(1000);
|
|
// cout << "PPPPPPPPPPPPPPPPPPPP " << queuesize << " " << thisDetector->fileIndex << endl;
|
|
}
|
|
pthread_mutex_unlock(&mp);
|
|
//cout << "thread mutex unlock line 6711" << endl;
|
|
//cout << "thread mutex lock line 6711" << endl;
|
|
pthread_mutex_lock(&mp);
|
|
if (jointhread) {
|
|
pthread_mutex_unlock(&mp);
|
|
//cout << "thread mutex unlock line 6715" << endl;
|
|
if (dataQueue.size()==0)
|
|
break;
|
|
} else
|
|
pthread_mutex_unlock(&mp);
|
|
//cout << "thread mutex unlock line 6720" << endl;
|
|
|
|
dum=0;
|
|
} // ????????????????????????
|
|
return 0;
|
|
}
|
|
|
|
|
|
int* slsDetectorUtils::popDataQueue() {
|
|
int *retval=NULL;
|
|
if( !dataQueue.empty() ) {
|
|
retval=dataQueue.front();
|
|
dataQueue.pop();
|
|
}
|
|
return retval;
|
|
}
|
|
|
|
detectorData* slsDetectorUtils::popFinalDataQueue() {
|
|
detectorData *retval=NULL;
|
|
if( !finalDataQueue.empty() ) {
|
|
retval=finalDataQueue.front();
|
|
finalDataQueue.pop();
|
|
}
|
|
return retval;
|
|
}
|
|
|
|
void slsDetectorUtils::resetDataQueue() {
|
|
int *retval=NULL;
|
|
while( !dataQueue.empty() ) {
|
|
retval=dataQueue.front();
|
|
dataQueue.pop();
|
|
delete [] retval;
|
|
}
|
|
|
|
}
|
|
|
|
void slsDetectorUtils::resetFinalDataQueue() {
|
|
detectorData *retval=NULL;
|
|
while( !finalDataQueue.empty() ) {
|
|
retval=finalDataQueue.front();
|
|
finalDataQueue.pop();
|
|
delete retval;
|
|
}
|
|
|
|
}
|
|
|
|
|
|
void slsDetectorUtils::startThread(int delflag) {
|
|
pthread_attr_t tattr;
|
|
int ret;
|
|
sched_param param, mparam;
|
|
int policy= SCHED_OTHER;
|
|
|
|
|
|
// set the priority; others are unchanged
|
|
//newprio = 30;
|
|
mparam.sched_priority =1;
|
|
param.sched_priority =1;
|
|
|
|
|
|
/* Initialize and set thread detached attribute */
|
|
pthread_attr_init(&tattr);
|
|
pthread_attr_setdetachstate(&tattr, PTHREAD_CREATE_JOINABLE);
|
|
|
|
|
|
|
|
// param.sched_priority = 5;
|
|
// scheduling parameters of main thread
|
|
ret = pthread_setschedparam(pthread_self(), policy, &mparam);
|
|
//#ifdef VERBOSE
|
|
// printf("current priority is %d\n",param.sched_priority);
|
|
//#endif
|
|
if (delflag)
|
|
ret = pthread_create(&dataProcessingThread, &tattr,startProcessData, (void*)this);
|
|
else
|
|
ret = pthread_create(&dataProcessingThread, &tattr,startProcessDataNoDelete, (void*)this);
|
|
|
|
pthread_attr_destroy(&tattr);
|
|
// scheduling parameters of target thread
|
|
ret = pthread_setschedparam(dataProcessingThread, policy, ¶m);
|
|
|
|
}
|
|
|
|
|
|
int slsDetectorUtils::fillBadChannelMask() {
|
|
|
|
int nbad=0;
|
|
|
|
if (*correctionMask&(1<< DISCARD_BAD_CHANNELS)) {
|
|
nbad=getBadChannelCorrection();
|
|
|
|
if (nbad>0) {
|
|
|
|
int *badChansList=new int[nbad];
|
|
getBadChannelCorrection(badChansList);
|
|
|
|
if (badChannelMask)
|
|
delete [] badChannelMask;
|
|
badChannelMask=new int[getTotalNumberOfChannels()];
|
|
for (int ichan=0; ichan<getTotalNumberOfChannels(); ichan++)
|
|
badChannelMask[ichan]=0;
|
|
for (int ichan=0; ichan<*nBadChans; ichan++) {
|
|
if (badChansList[ichan]<getTotalNumberOfChannels() && badChansList[ichan]>=0 ) {
|
|
if (badChannelMask[badChansList[ichan]]==0)
|
|
nbad++;
|
|
badChannelMask[badChansList[ichan]]=1;
|
|
|
|
}
|
|
}
|
|
delete [] badChansList;
|
|
|
|
} else {
|
|
if (badChannelMask) {
|
|
delete [] badChannelMask;
|
|
badChannelMask=NULL;
|
|
}
|
|
}
|
|
|
|
} else {
|
|
if (badChannelMask) {
|
|
delete [] badChannelMask;
|
|
badChannelMask=NULL;
|
|
}
|
|
}
|
|
|
|
return nbad;
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
/*
|
|
set positions for the acquisition
|
|
\param nPos number of positions
|
|
\param pos array with the encoder positions
|
|
\returns number of positions
|
|
*/
|
|
int slsDetectorUtils::setPositions(int nPos, float *pos){
|
|
if (nPos>=0)
|
|
*numberOfPositions=nPos;
|
|
for (int ip=0; ip<nPos; ip++)
|
|
detPositions[ip]=pos[ip];
|
|
|
|
|
|
//setTotalProgress();
|
|
|
|
return *numberOfPositions;
|
|
}
|
|
/*
|
|
get positions for the acquisition
|
|
\param pos array which will contain the encoder positions
|
|
\returns number of positions
|
|
*/
|
|
int slsDetectorUtils::getPositions(float *pos){
|
|
if (pos ) {
|
|
for (int ip=0; ip<*numberOfPositions; ip++)
|
|
pos[ip]=detPositions[ip];
|
|
}
|
|
//setTotalProgress();
|
|
|
|
return *numberOfPositions;
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
/**
|
|
set action
|
|
\param iaction can be enum {startScript, scriptBefore, headerBefore, headerAfter,scriptAfter, stopScript, MAX_ACTIONS}
|
|
\param fname for script ("" disable but leaves script unchanged, "none" disables and overwrites)
|
|
\returns 0 if action disabled, >0 otherwise
|
|
*/
|
|
int slsDetectorUtils::setAction(int iaction, string fname, string par) {
|
|
|
|
int am;
|
|
|
|
|
|
if (iaction>=0 && iaction<MAX_ACTIONS) {
|
|
|
|
if (fname=="") {
|
|
am=0;
|
|
} else if (fname=="none") {
|
|
am=0;
|
|
strcpy(actionScript[iaction],fname.c_str());
|
|
} else {
|
|
strcpy(actionScript[iaction],fname.c_str());
|
|
am=1;
|
|
}
|
|
|
|
if (par!="") {
|
|
strcpy(actionParameter[iaction],par.c_str());
|
|
}
|
|
|
|
if (am) {
|
|
|
|
#ifdef VERBOSE
|
|
cout << iaction << " " << hex << (1 << iaction) << " " << *actionMask << dec;
|
|
#endif
|
|
|
|
*actionMask |= (1 << iaction);
|
|
|
|
#ifdef VERBOSE
|
|
cout << " set " << hex << *actionMask << dec << endl;
|
|
#endif
|
|
|
|
} else {
|
|
#ifdef VERBOSE
|
|
cout << iaction << " " << hex << *actionMask << dec;
|
|
#endif
|
|
|
|
*actionMask &= ~(1 << iaction);
|
|
|
|
#ifdef VERBOSE
|
|
cout << " unset " << hex << *actionMask << dec << endl;
|
|
#endif
|
|
}
|
|
#ifdef VERBOSE
|
|
cout << iaction << " Action mask set to " << hex << *actionMask << dec << endl;
|
|
#endif
|
|
|
|
return am;
|
|
} else
|
|
return -1;
|
|
}
|
|
|
|
|
|
int slsDetectorUtils::setActionScript(int iaction, string fname) {
|
|
#ifdef VERBOSE
|
|
|
|
#endif
|
|
return setAction(iaction,fname,"");
|
|
}
|
|
|
|
|
|
|
|
int slsDetectorUtils::setActionParameter(int iaction, string par) {
|
|
int am;
|
|
|
|
if (iaction>=0 && iaction<MAX_ACTIONS) {
|
|
am= 1& ( (*actionMask) << iaction);
|
|
|
|
if (par!="") {
|
|
strcpy(actionParameter[iaction],par.c_str());
|
|
}
|
|
|
|
if ((*actionMask) & (1 << iaction))
|
|
return 1;
|
|
else
|
|
return 0;
|
|
} else
|
|
return -1;
|
|
}
|
|
|
|
/**
|
|
returns action script
|
|
\param iaction can be enum {startScript, scriptBefore, headerBefore, headerAfter,scriptAfter, stopScript}
|
|
\returns action script
|
|
*/
|
|
string slsDetectorUtils::getActionScript(int iaction){
|
|
if (iaction>=0 && iaction<MAX_ACTIONS)
|
|
return string(actionScript[iaction]);
|
|
else
|
|
return string("wrong index");
|
|
};
|
|
|
|
/**
|
|
returns action parameter
|
|
\param iaction can be enum {startScript, scriptBefore, headerBefore, headerAfter,scriptAfter, stopScript}
|
|
\returns action parameter
|
|
*/
|
|
string slsDetectorUtils::getActionParameter(int iaction){
|
|
if (iaction>=0 && iaction<MAX_ACTIONS)
|
|
return string(actionParameter[iaction]);
|
|
else
|
|
return string("wrong index");
|
|
}
|
|
|
|
/**
|
|
returns action mode
|
|
\param iaction can be enum {startScript, scriptBefore, headerBefore, headerAfter,scriptAfter, stopScript}
|
|
\returns action mode
|
|
*/
|
|
int slsDetectorUtils::getActionMode(int iaction){
|
|
if (iaction>=0 && iaction<MAX_ACTIONS) {
|
|
|
|
if ((*actionMask) & (1 << iaction))
|
|
return 1;
|
|
else
|
|
return 0;
|
|
} else {
|
|
#ifdef VERBOSE
|
|
cout << "slsDetetctor : wrong action index " << iaction << endl;
|
|
#endif
|
|
return -1;
|
|
}
|
|
}
|
|
|
|
|
|
/**
|
|
set scan
|
|
\param index of the scan (0,1)
|
|
\param fname for script ("" disable)
|
|
\returns 0 if scan disabled, >0 otherwise
|
|
*/
|
|
int slsDetectorUtils::setScan(int iscan, string script, int nvalues, float *values, string par, int precision) {
|
|
if (iscan>=0 && iscan<MAX_SCAN_LEVELS) {
|
|
|
|
if (script=="") {
|
|
scanMode[iscan]=0;
|
|
} else {
|
|
strcpy(scanScript[iscan],script.c_str());
|
|
if (script=="none") {
|
|
scanMode[iscan]=0;
|
|
} else if (script=="energy") {
|
|
scanMode[iscan]=1;
|
|
} else if (script=="threshold") {
|
|
scanMode[iscan]=2;
|
|
} else if (script=="trimbits") {
|
|
scanMode[iscan]=3;
|
|
} else {
|
|
scanMode[iscan]=4;
|
|
}
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
if (par!="")
|
|
strcpy(scanParameter[iscan],par.c_str());
|
|
|
|
if (nvalues>=0) {
|
|
if (nvalues==0)
|
|
scanMode[iscan]=0;
|
|
else {
|
|
nScanSteps[iscan]=nvalues;
|
|
if (nvalues>MAX_SCAN_STEPS)
|
|
nScanSteps[iscan]=MAX_SCAN_STEPS;
|
|
}
|
|
}
|
|
|
|
if (values && scanMode[iscan]>0 ) {
|
|
for (int iv=0; iv<nScanSteps[iscan]; iv++) {
|
|
scanSteps[iscan][iv]=values[iv];
|
|
}
|
|
}
|
|
|
|
if (precision>=0)
|
|
scanPrecision[iscan]=precision;
|
|
|
|
if (scanMode[iscan]>0){
|
|
*actionMask |= 1<< (iscan+MAX_ACTIONS);
|
|
} else {
|
|
*actionMask &= ~(1 << (iscan+MAX_ACTIONS));
|
|
}
|
|
|
|
|
|
|
|
setTotalProgress();
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
return scanMode[iscan];
|
|
} else
|
|
return -1;
|
|
|
|
}
|
|
|
|
int slsDetectorUtils::setScanScript(int iscan, string script) {
|
|
if (iscan>=0 && iscan<MAX_SCAN_LEVELS) {
|
|
if (script=="") {
|
|
scanMode[iscan]=0;
|
|
} else {
|
|
strcpy(scanScript[iscan],script.c_str());
|
|
if (script=="none") {
|
|
scanMode[iscan]=0;
|
|
} else if (script=="energy") {
|
|
scanMode[iscan]=1;
|
|
} else if (script=="threshold") {
|
|
scanMode[iscan]=2;
|
|
} else if (script=="trimbits") {
|
|
scanMode[iscan]=3;
|
|
} else {
|
|
scanMode[iscan]=4;
|
|
}
|
|
}
|
|
|
|
if (scanMode[iscan]>0){
|
|
*actionMask |= (1 << (iscan+MAX_ACTIONS));
|
|
} else {
|
|
*actionMask &= ~(1 << (iscan+MAX_ACTIONS));
|
|
}
|
|
|
|
setTotalProgress();
|
|
|
|
#ifdef VERBOSE
|
|
cout << "Action mask is " << hex << actionMask << dec << endl;
|
|
#endif
|
|
return scanMode[iscan];
|
|
} else
|
|
return -1;
|
|
}
|
|
|
|
|
|
|
|
int slsDetectorUtils::setScanParameter(int iscan, string par) {
|
|
|
|
|
|
if (iscan>=0 && iscan<MAX_SCAN_LEVELS) {
|
|
if (par!="")
|
|
strcpy(scanParameter[iscan],par.c_str());
|
|
return scanMode[iscan];
|
|
} else
|
|
return -1;
|
|
|
|
}
|
|
|
|
|
|
int slsDetectorUtils::setScanPrecision(int iscan, int precision) {
|
|
if (iscan>=0 && iscan<MAX_SCAN_LEVELS) {
|
|
if (precision>=0)
|
|
scanPrecision[iscan]=precision;
|
|
return scanMode[iscan];
|
|
} else
|
|
return -1;
|
|
|
|
}
|
|
|
|
int slsDetectorUtils::setScanSteps(int iscan, int nvalues, float *values) {
|
|
|
|
if (iscan>=0 && iscan<MAX_SCAN_LEVELS) {
|
|
|
|
if (nvalues>=0) {
|
|
if (nvalues==0)
|
|
scanMode[iscan]=0;
|
|
else {
|
|
nScanSteps[iscan]=nvalues;
|
|
if (nvalues>MAX_SCAN_STEPS)
|
|
nScanSteps[iscan]=MAX_SCAN_STEPS;
|
|
}
|
|
}
|
|
|
|
if (values) {
|
|
for (int iv=0; iv<nScanSteps[iscan]; iv++) {
|
|
scanSteps[iscan][iv]=values[iv];
|
|
}
|
|
}
|
|
|
|
if (scanMode[iscan]>0){
|
|
*actionMask |= (1 << (iscan+MAX_ACTIONS));
|
|
} else {
|
|
*actionMask &= ~(1 << (iscan+MAX_ACTIONS));
|
|
}
|
|
|
|
#ifdef VERBOSE
|
|
cout << "Action mask is " << hex << actionMask << dec << endl;
|
|
#endif
|
|
setTotalProgress();
|
|
|
|
|
|
|
|
|
|
return scanMode[iscan];
|
|
|
|
|
|
} else
|
|
return -1;
|
|
|
|
|
|
|
|
|
|
}
|
|
|
|
|
|
|
|
/**
|
|
returns scan script
|
|
\param iscan can be (0,1)
|
|
\returns scan script
|
|
*/
|
|
string slsDetectorUtils::getScanScript(int iscan){
|
|
if (iscan>=0 && iscan<MAX_SCAN_LEVELS) {
|
|
if (scanMode[iscan])
|
|
return string(scanScript[iscan]);
|
|
else
|
|
return string("none");
|
|
} else
|
|
return string("wrong index");
|
|
|
|
};
|
|
|
|
/**
|
|
returns scan parameter
|
|
\param iscan can be (0,1)
|
|
\returns scan parameter
|
|
*/
|
|
string slsDetectorUtils::getScanParameter(int iscan){
|
|
if (iscan>=0 && iscan<MAX_SCAN_LEVELS) {
|
|
if (scanMode[iscan])
|
|
return string(scanParameter[iscan]);
|
|
else
|
|
return string("none");
|
|
} else
|
|
return string("wrong index");
|
|
}
|
|
|
|
|
|
/**
|
|
returns scan mode
|
|
\param iscan can be (0,1)
|
|
\returns scan mode
|
|
*/
|
|
int slsDetectorUtils::getScanMode(int iscan){
|
|
if (iscan>=0 && iscan<MAX_SCAN_LEVELS)
|
|
return scanMode[iscan];
|
|
else
|
|
return -1;
|
|
}
|
|
|
|
|
|
/**
|
|
returns scan steps
|
|
\param iscan can be (0,1)
|
|
\param v is the pointer to the scan steps
|
|
\returns scan steps
|
|
*/
|
|
int slsDetectorUtils::getScanSteps(int iscan, float *v) {
|
|
|
|
if (iscan>=0 && iscan<MAX_SCAN_LEVELS) {
|
|
if (v) {
|
|
for (int iv=0; iv<nScanSteps[iscan]; iv++) {
|
|
v[iv]=scanSteps[iscan][iv];
|
|
}
|
|
}
|
|
|
|
|
|
setTotalProgress();
|
|
|
|
|
|
if (scanMode[iscan])
|
|
return nScanSteps[iscan];
|
|
else
|
|
return 0;
|
|
} else
|
|
return -1;
|
|
}
|
|
|
|
|
|
int slsDetectorUtils::getScanPrecision(int iscan){
|
|
if (iscan>=0 && iscan<MAX_SCAN_LEVELS) {
|
|
return scanPrecision[iscan];
|
|
} else
|
|
return -1;
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
int slsDetectorUtils::setTotalProgress() {
|
|
|
|
int nf=1, npos=1, nscan[MAX_SCAN_LEVELS]={1,1}, nc=1;
|
|
|
|
|
|
|
|
|
|
|
|
if (timerValue[FRAME_NUMBER])
|
|
nf=timerValue[FRAME_NUMBER];
|
|
|
|
if (timerValue[CYCLES_NUMBER]>0)
|
|
nc=timerValue[CYCLES_NUMBER];
|
|
|
|
if (*numberOfPositions>0)
|
|
npos=*numberOfPositions;
|
|
|
|
if ((nScanSteps[0]>0) && (*actionMask & (1 << MAX_ACTIONS)))
|
|
nscan[0]=nScanSteps[0];
|
|
|
|
if ((nScanSteps[1]>0) && (*actionMask & (1 << (MAX_ACTIONS+1))))
|
|
nscan[1]=nScanSteps[1];
|
|
|
|
totalProgress=nf*nc*npos*nscan[0]*nscan[1];
|
|
|
|
#ifdef VERBOSE
|
|
cout << "nc " << nc << endl;
|
|
cout << "nf " << nf << endl;
|
|
cout << "npos " << npos << endl;
|
|
cout << "nscan[0] " << nscan[0] << endl;
|
|
cout << "nscan[1] " << nscan[1] << endl;
|
|
|
|
cout << "Set total progress " << totalProgress << endl;
|
|
#endif
|
|
return totalProgress;
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
float slsDetectorUtils::getCurrentProgress() {
|
|
|
|
return 100.*((float)progressIndex)/((float)totalProgress);
|
|
}
|
|
|
|
|