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slsDetectorPackage/slsDetectorCalibration/moenchExecutables/moenchZmqProcess.cpp

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//#define WRITE_QUAD
#define DEVELOPER
#undef CORR
#define C_GHOST 0.0004
#define CM_ROWS 20
#include "sls_detector_defs.h"
#include "ZmqSocket.h"
#ifndef RECT
#ifndef MOENCH04
#include "moench03T1ZmqDataNew.h"
#endif
#ifdef MOENCH04
#include "moench04CtbZmq10GbData.h"
#endif
#endif
#ifdef RECT
#include "moench03T1ZmqDataNewRect.h"
#endif
#include "moench03GhostSummation.h"
#include "moench03CommonMode.h"
#include <vector>
#include <string>
#include <sstream>
#include <iomanip>
#include <fstream>
#include "tiffIO.h"
#include <rapidjson/document.h> //json header in zmq stream
#include<iostream>
//#include "analogDetector.h"
//#include "multiThreadedAnalogDetector.h"
//#include "singlePhotonDetector.h"
//#include "interpolatingDetector.h"
//#include "multiThreadedCountingDetector.h"
#include "multiThreadedInterpolatingDetector.h"
#include "etaInterpolationPosXY.h"
#include "ansi.h"
#include <iostream>
#include <chrono>
#include <ctime> // time_t
#include <cstdio>
using namespace std;
using namespace std::chrono;
//#define SLS_DETECTOR_JSON_HEADER_VERSION 0x2
// myDet->setNetworkParameter(ADDITIONAL_JSON_HEADER, " \"what\":\"nothing\" ");
int main(int argc, char *argv[]) {
/**
* trial.o [socket ip] [starting port number] [send_socket ip] [send port number]
*
*/
FILE *of=NULL;
int fifosize=5000;
int etabins=1000, etabinsy=1000;//nsubpix*2*100;
double etamin=-1, etamax=2;
int nSubPixelsX=2;
// int emin, emax;
int nSubPixelsY=2;
// help
if (argc < 3 ) {
cprintf(RED, "Help: ./trial [receive socket ip] [receive starting port number] [send_socket ip] [send starting port number] [nthreads] [nsubpix] [gainmap] [etafile]\n");
return EXIT_FAILURE;
}
// receive parameters
bool send = false;
char* socketip=argv[1];
uint32_t portnum = atoi(argv[2]);
// send parameters if any
char* socketip2 = 0;
uint32_t portnum2 = 0;
zmqHeader zHeader, outHeader;
zHeader.jsonversion = SLS_DETECTOR_JSON_HEADER_VERSION;
outHeader.jsonversion = SLS_DETECTOR_JSON_HEADER_VERSION;
uint32_t nSigma=5;
int ok;
high_resolution_clock::time_point t1;
high_resolution_clock::time_point t2 ;
std::chrono::steady_clock::time_point begin,end,finished;
//time_t begin,end,finished;
int rms=0;
if (argc > 4) {
socketip2 = argv[3];
portnum2 = atoi(argv[4]);
if (portnum2>0)
send = true;
}
cout << "\nrx socket ip : " << socketip <<
"\nrx port num : " << portnum ;
if (send) {
cout << "\ntx socket ip : " << socketip2 <<
"\ntx port num : " << portnum2;
}
int nthreads=5;
if (argc>5)
nthreads=atoi(argv[5]);
cout << "Number of threads is: " << nthreads << endl;
if (argc>6) {
nSubPixelsX=atoi(argv[6]);
nSubPixelsY=nSubPixelsX;
#ifdef RECT
nSubPixelsX=2;
#endif
}
cout << "Number of subpixels is: " << nSubPixelsX << " " << nSubPixelsY << endl;
char *gainfname=NULL;
if (argc>7) {
gainfname=argv[7];
cout << "Gain map file name is: " << gainfname << endl;
}
char *etafname=NULL;
if (argc>8) {
etafname=argv[8];
cout << "Eta file name is: " << etafname << endl;
}
//slsDetectorData *det=new moench03T1ZmqDataNew();
#ifndef MOENCH04
moench03T1ZmqDataNew *det=new moench03T1ZmqDataNew();
#endif
#ifdef MOENCH04
moench04CtbZmq10GbData *det=new moench04CtbZmq10GbData();
#endif
cout << endl << " det" <<endl;
int npx, npy;
det->getDetectorSize(npx, npy);
int send_something=0;
int maxSize = npx*npy*2;//32*2*8192;//5000;//atoi(argv[3]);
int size= maxSize;//32*2*5000;
//int multisize=size;
//int dataSize=size;
char dummybuff[size];
moench03CommonMode *cm=NULL;
moench03GhostSummation *gs=NULL;
#ifdef CORR
//int ncol_cm=CM_ROWS;
//double xt_ghost=C_GHOST;
cm=new moench03CommonMode(CM_ROWS);
gs=new moench03GhostSummation(det, C_GHOST);
#endif
double *gainmap=NULL;
float *gm;
double *gmap=NULL;
uint32_t nnnx, nnny;
if (gainfname) {
gm=ReadFromTiff(gainfname, nnny, nnnx);
if (gm && nnnx==(uint)npx && nnny==(uint)npy) {
gmap=new double[npx*npy];
for (int i=0; i<npx*npy; i++) {
gmap[i]=gm[i];
}
delete [] gm;
} else
cout << "Could not open gain map " << gainfname << endl;
}
//analogDetector<uint16_t> *filter=new analogDetector<uint16_t>(det,1,NULL,1000);
#ifndef INTERP
singlePhotonDetector *filter=new singlePhotonDetector(det,3, nSigma, 1, cm, 1000, 100, -1, -1, gainmap, gs);
multiThreadedCountingDetector *mt=new multiThreadedCountingDetector(filter,nthreads,fifosize);
// multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
#endif
#ifdef INTERP
eta2InterpolationPosXY *interp=new eta2InterpolationPosXY(npx, npy, nSubPixelsX,nSubPixelsY, etabins, etabinsy, etamin, etamax);
if (etafname) interp->readFlatField(etafname);
interpolatingDetector *filter=new interpolatingDetector(det,interp, nSigma, 1, cm, 1000, 10, -1, -1, gainmap, gs);
multiThreadedInterpolatingDetector *mt=new multiThreadedInterpolatingDetector(filter,nthreads,fifosize);
#endif
char* buff;
mt->setFrameMode(eFrame);
mt->StartThreads();
mt->popFree(buff);
ZmqSocket* zmqsocket=NULL;
#ifdef NEWZMQ
// receive socket
try{
#endif
zmqsocket = new ZmqSocket(socketip,portnum);
#ifdef NEWZMQ
} catch (...) {
cprintf(RED, "Error: Could not create Zmq socket on port %d with ip %s\n", portnum, socketip);
delete zmqsocket;
return EXIT_FAILURE;
}
#endif
#ifndef NEWZMQ
if (zmqsocket->IsError()) {
cprintf(RED, "Error: Could not create Zmq socket on port %d with ip %s\n", portnum, socketip);
delete zmqsocket;
return EXIT_FAILURE;
}
#endif
if (zmqsocket->Connect()) {
cprintf(RED, "Error: Could not connect to socket %s\n",
(zmqsocket->GetZmqServerAddress()).c_str());
delete zmqsocket;
return EXIT_FAILURE;
} else
printf("Zmq Client at %s\n", zmqsocket->GetZmqServerAddress().c_str());
// send socket
ZmqSocket* zmqsocket2 = 0;
// cout << "zmq2 " << endl;
if (send) {
#ifdef NEWZMQ
// receive socket
try{
#endif
zmqsocket2 = new ZmqSocket(portnum2, socketip2);
#ifdef NEWZMQ
} catch (...) {
cprintf(RED, "Error: Could not create Zmq socket server on port %d and ip %s\n", portnum2, socketip2);
// delete zmqsocket2;
// zmqsocket2=NULL;
// delete zmqsocket;
// return EXIT_FAILURE;
send = false;
}
#endif
#ifndef NEWZMQ
if (zmqsocket2->IsError()) {
cprintf(RED, "AAA Error: Could not create Zmq socket server on port %d and ip %s\n", portnum2, socketip2);
// delete zmqsocket2;
//delete zmqsocket;
// return EXIT_FAILURE;
send = false;
}
#endif
if (zmqsocket2->Connect()) {
cprintf(RED, "BBB Error: Could not connect to socket %s\n",
zmqsocket2->GetZmqServerAddress().c_str());
// delete zmqsocket2;
send = false;
// return EXIT_FAILURE;
} else
printf("Zmq Client at %s\n", zmqsocket2->GetZmqServerAddress().c_str());
}
// header variables
uint64_t acqIndex = -1;
uint64_t frameIndex = -1;
#ifdef MOENCH_BRANCH
uint32_t subFrameIndex = -1;
int* flippedData = 0;
#endif
uint64_t subframes=0;
//uint64_t isubframe=0;
uint64_t insubframe=0;
double subnorm=1;
uint64_t f0=-1, nsubframes=0, nnsubframe=0;
uint64_t fileindex = -1;
string filename = "";
// char* image = new char[size];
//int* image = new int[(size/sizeof(int))]();
//uint32_t flippedDataX = -1;
//int *nph;
int iframe=0;
char ofname[10000];
string fname;
// int length;
int *detimage=NULL;
int nnx, nny,nnsx, nnsy;
//uint32_t imageSize = 0, nPixelsX = 0, nPixelsY = 0,
//uint32_t dynamicRange = 0;
// infinite loop
uint32_t packetNumber = 0;
uint64_t bunchId = 0;
uint64_t timestamp = 0;
int16_t modId = 0;
uint32_t expLength=0;
uint16_t xCoord = 0;
uint16_t yCoord = 0;
//uint16_t zCoord = 0;
uint32_t debug = 0;
//uint32_t dr = 16;
//int16_t *dout;//=new int16_t [nnx*nny];
uint32_t dr = 32;
int32_t *dout=NULL;//=new int32_t [nnx*nny];
float *doutf=NULL;//=new int32_t [nnx*nny];
uint16_t roundRNumber = 0;
uint8_t detType = 0;
uint8_t version = 0;
string additionalJsonHeader="" ;
int32_t threshold=0;
int32_t xmin=0, xmax=400, ymin=0, ymax=400;
string frameMode_s, detectorMode_s, intMode_s;
// int resetFlat=0;
//int resetPed=0;
// int nsubPixels=1;
//int isPedestal=0;
//int isFlat=0;
int newFrame=1;
detectorMode dMode=eAnalog;
frameMode fMode=eFrame;
double *ped;
filter->getImageSize(nnx, nny,nnsx, nnsy);
std::map<std::string, std::string> addJsonHeader;
while(1) {
// cout << "+++++++++++++++++++++++++++++++LOOP" << endl;
// get header, (if dummy, fail is on parse error or end of acquisition)
// rapidjson::Document doc;
if (!zmqsocket->ReceiveHeader(0, zHeader, SLS_DETECTOR_JSON_HEADER_VERSION)) {
/* zmqsocket->CloseHeaderMessage();*/
// if (!zmqsocket->ReceiveHeader(0, acqIndex, frameIndex, subframeIndex, filename, fileindex)) {
cprintf(RED, "Got Dummy\n");
// t1=high_resolution_clock::now();
//time(&end);
//cout << "Measurement lasted " << difftime(end,begin) << endl;
end = std::chrono::steady_clock::now();
cout << "Measurement lasted " << (end-begin).count()*0.000001 << " ms" << endl;
while (mt->isBusy()) {;}//wait until all data are processed from the queues
if (of) {
mt->setFilePointer(NULL);
fclose(of);
of=NULL;
}
if (newFrame>0) {
cprintf(RED,"DIDn't receive any data!\n");
if (send) {
//zHeader.data = false;
outHeader.data=false;
// zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
zmqsocket2->SendHeader(0,outHeader);
cprintf(RED, "Sent Dummy\n");
}
} else {
send_something=0;
if (fMode==ePedestal) {
sprintf(ofname,"%s_%ld_ped.tiff",fname.c_str(),fileindex);
mt->writePedestal(ofname);
cout << "Writing pedestal to " << ofname << endl;
if (rms){
sprintf(ofname,"%s_%ld_var.tiff",fname.c_str(),fileindex);
mt->writePedestalRMS(ofname);
}
send_something=1;
}
#ifdef INTERP
else if (fMode==eFlat) {
mt->prepareInterpolation(ok);
sprintf(ofname,"%s_%ld_eta.tiff",fname.c_str(),fileindex);
mt->writeFlatField(ofname);
cout << "Writing eta to " << ofname << endl;
send_something=1;
}
#endif
else {
if (subframes>0 ) {
if (insubframe>0) {
sprintf(ofname,"%s_sf%ld_%ld.tiff",fname.c_str(),nnsubframe,fileindex);
// mt->writeImage(ofname);
doutf= new float[nnx*nny];
if (subframes>0 && insubframe!=subframes && insubframe>0)
subnorm=((double)subframes)/((double)insubframe);
else
subnorm=1.;
for (int ix=0; ix<nnx*nny; ix++) {
doutf[ix]=detimage[ix]*subnorm;
if (doutf[ix]<0) doutf[ix]=0;
}
cout << "Writing image to " << ofname << endl;
WriteToTiff(doutf,ofname ,nnx, nny);
if (doutf)
delete [] doutf;
doutf=NULL;
nsubframes++;
insubframe=0;
send_something=1;
}
} else {
sprintf(ofname,"%s_%ld.tiff",fname.c_str(),fileindex);
mt->writeImage(ofname);
send_something=1;
}
cout << "Writing image to " << ofname << endl;
}
// cout << nns*nnx*nny*nns*dr/8 << " " << length << endl;
if (send) {
if (fMode==ePedestal) {
cprintf(MAGENTA,"Get pedestal!\n");
nnsx=1;
nnsy=1;
nnx=npx;
nny=npy;
//dout= new int16_t[nnx*nny*nns*nns];
dout= new int32_t[nnx*nny*nnsx*nnsy];
// cout << "get pedestal " << endl;
ped=mt->getPedestal();
// cout << "got pedestal " << endl;
for (int ix=0; ix<nnx*nny; ix++) {
dout[ix]=ped[ix];
// if (ix<100*400)
// cout << ix << " " << ped[ix] << endl;
}
}
#ifdef INTERP
else if (fMode==eFlat) {
int nb;
double emi=0, ema=1;
int *ff=mt->getFlatField(nb, emi, ema);
nnx=nb;
nny=nb;
dout= new int32_t[nb*nb];
for (int ix=0; ix<nb*nb; ix++) {
dout[ix]=ff[ix];
}
}
#endif
else {
detimage=mt->getImage(nnx,nny,nnsx, nnsy);
cprintf(MAGENTA,"Get image!\n");
cout << nnx << " " << nny << " " << nnsx << " " << nnsy << endl;
// nns=1;
// nnx=npx;
// nny=npy;
// nnx=nnx*nns;
//nny=nny*nns;
dout= new int32_t[nnx*nny];
if (subframes>0 && insubframe!=subframes && insubframe>0)
subnorm=((double)subframes)/((double)insubframe);
else
subnorm=1.;
for (int ix=0; ix<nnx*nny; ix++) {
// for (int iy=0; iy<nny*nns; iy++) {
// for (int isx=0; isx<nns; isx++) {
// for (int isy=0; isy<nns; isy++) {
// if (isx==0 && isy==0)
// dout[iy*nnx+ix]=detimage[(iy+isy)*nnx*nns+ix+isx];
// else
// dout[iy*nnx+ix]+=detimage[(iy+isy)*nnx*nns+ix+isx];
// }
// }
dout[ix]=detimage[ix]*subnorm;
if (dout[ix]<0) dout[ix]=0;
// cout << ix << " " << dout[ix] << endl;
// }
}
}
//if ((insubframe>0 && subframes>0) || (subframes<=0) ){
if(send_something) {
// zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 1,1,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,&additionalJsonHeader);
outHeader.data=true;
outHeader.dynamicRange=dr;
outHeader.fileIndex=fileindex;
outHeader.ndetx=1;
outHeader.ndety=1;
outHeader.npixelsx=nnx;
outHeader.npixelsy=nny;
outHeader.imageSize=nnx*nny*dr/8;
outHeader.acqIndex=acqIndex;
outHeader.frameIndex=frameIndex;
outHeader.fname=fname;
outHeader.frameNumber=acqIndex;
outHeader.expLength=expLength;
outHeader.packetNumber=packetNumber;
outHeader.bunchId=bunchId;
outHeader.timestamp=timestamp;
outHeader.modId=modId;
outHeader.row=xCoord;
outHeader.column=yCoord;
outHeader.debug=debug;
outHeader.roundRNumber=roundRNumber;
outHeader.detType=detType;
outHeader.version=version;
zmqsocket2->SendHeader(0,outHeader);
zmqsocket2->SendData((char*)dout,nnx*nny*dr/8);
cprintf(GREEN, "Sent Data\n");
}
outHeader.data=false;
zmqsocket2->SendHeader(0,outHeader);
// zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
cprintf(RED, "Sent Dummy\n");
if (dout)
delete [] dout;
dout=NULL;
}
}
mt->clearImage();
newFrame=1;
//time(&finished);
//cout << "Processing lasted " << difftime(finished,begin) << endl;
finished = std::chrono::steady_clock::now();
cout << "Processing lasted " << (finished-begin).count()*0.000001 << " ms" << endl;
#ifdef OPTIMIZE
return 0;
#endif
continue; //continue to not get out
}
//#ifdef NEWZMQ
if (newFrame) {
begin = std::chrono::steady_clock::now();
size = zHeader.imageSize;//doc["size"].GetUint();
// dynamicRange = zheader.dynamicRange; //doc["bitmode"].GetUint();
// nPixelsX = zHeader.npixelsx; //doc["shape"][0].GetUint();
// nPixelsY = zHeader.npixelsy;// doc["shape"][1].GetUint();
filename = zHeader.fname;//doc["fname"].GetString();
acqIndex = zHeader.acqIndex; //doc["acqIndex"].GetUint64();
// frameIndex = zHeader.frameIndex;//doc["fIndex"].GetUint64();
fileindex = zHeader.fileIndex;//doc["fileIndex"].GetUint64();
expLength = zHeader.expLength;//doc["expLength"].GetUint();
packetNumber=zHeader.packetNumber;//doc["packetNumber"].GetUint();
bunchId=zHeader.bunchId;//doc["bunchId"].GetUint();
timestamp=zHeader.timestamp;//doc["timestamp"].GetUint();
modId=zHeader.modId;//doc["modId"].GetUint();
debug=zHeader.debug;//doc["debug"].GetUint();
// roundRNumber=r.roundRNumber;//doc["roundRNumber"].GetUint();
detType=zHeader.detType;//doc["detType"].GetUint();
version=zHeader.version;//doc["version"].GetUint();
/*document["bitmode"].GetUint(); zHeader.dynamicRange
document["fileIndex"].GetUint64(); zHeader.fileIndex
document["detshape"][0].GetUint();
zHeader.ndetx
document["detshape"][1].GetUint();
zHeader.ndety
document["shape"][0].GetUint();
zHeader.npixelsx
document["shape"][1].GetUint();
zHeader.npixelsy
document["size"].GetUint(); zHeader.imageSize
document["acqIndex"].GetUint64(); zHeader.acqIndex
document["frameIndex"].GetUint64(); zHeader.frameIndex
document["fname"].GetString(); zHeader.fname
document["frameNumber"].GetUint64(); zHeader.frameNumber
document["expLength"].GetUint(); zHeader.expLength
document["packetNumber"].GetUint(); zHeader.packetNumber
document["bunchId"].GetUint64(); zHeader.bunchId
document["timestamp"].GetUint64(); zHeader.timestamp
document["modId"].GetUint(); zHeader.modId
document["row"].GetUint(); zHeader.row
document["column"].GetUint(); zHeader.column
document["reserved"].GetUint(); zHeader.reserved
document["debug"].GetUint(); zHeader.debug
document["roundRNumber"].GetUint(); zHeader.roundRNumber
document["detType"].GetUint(); zHeader.detType
document["version"].GetUint(); zHeader.version
document["flippedDataX"].GetUint(); zHeader.flippedDataX
document["quad"].GetUint(); zHeader.quad
document["completeImage"].GetUint(); zHeader.completeImage
*/
//dataSize=size;
//strcpy(fname,filename.c_str());
fname=filename;
// cprintf(BLUE, "Header Info:\n"
// "size: %u\n"
// "multisize: %u\n"
// "dynamicRange: %u\n"
// "nPixelsX: %u\n"
// "nPixelsY: %u\n"
// "currentFileName: %s\n"
// "currentAcquisitionIndex: %lu\n"
// "currentFrameIndex: %lu\n"
// "currentFileIndex: %lu\n"
// "currentSubFrameIndex: %u\n"
// "xCoordX: %u\n"
// "yCoordY: %u\n"
// "zCoordZ: %u\n"
// "flippedDataX: %u\n"
// "packetNumber: %u\n"
// "bunchId: %u\n"
// "timestamp: %u\n"
// "modId: %u\n"
// "debug: %u\n"
// "roundRNumber: %u\n"
// "detType: %u\n"
// "version: %u\n",
// size, multisize, dynamicRange, nPixelsX, nPixelsY,
// filename.c_str(), acqIndex,
// frameIndex, fileindex, subFrameIndex,
// xCoord, yCoord,zCoord,
// flippedDataX, packetNumber, bunchId, timestamp, modId, debug, roundRNumber, detType, version);
addJsonHeader=zHeader.addJsonHeader;
/* Analog detector commands */
//isPedestal=0;
//isFlat=0;
rms=0;
fMode=eFrame;
frameMode_s="frame";
cprintf(MAGENTA, "Frame mode: ");
// if (doc.HasMember("frameMode")) {
if (addJsonHeader.find("frameMode")!= addJsonHeader.end()) {
// if (doc["frameMode"].IsString()) {
frameMode_s=addJsonHeader.at("frameMode");//doc["frameMode"].GetString();
if (frameMode_s == "pedestal"){
fMode=ePedestal;
//isPedestal=1;
} else if (frameMode_s == "newPedestal"){
mt->newDataSet(); //resets pedestal
// cprintf(MAGENTA, "Resetting pedestal\n");
fMode=ePedestal;
//isPedestal=1;
} else if (frameMode_s == "variance"){
mt->newDataSet(); //resets pedestal
// cprintf(MAGENTA, "Resetting pedestal\n");
fMode=ePedestal;
//isPedestal=1;
rms=1;
}
#ifdef INTERP
else if (frameMode_s == "flatfield") {
fMode=eFlat;
//isFlat=1;
} else if (frameMode_s == "newFlatfield") {
mt->resetFlatField();
//isFlat=1;
cprintf(MAGENTA, "Resetting flatfield\n");
fMode=eFlat;
}
//#endif
else {
fMode=eFrame;
//isPedestal=0;
//isFlat=0;
fMode=eFrame;
frameMode_s="frame";
}
//}
}
cprintf(MAGENTA, "%s\n" , frameMode_s.c_str());
mt->setFrameMode(fMode);
// threshold=0;
cprintf(MAGENTA, "Threshold: ");
if (addJsonHeader.find("threshold")!= addJsonHeader.end()) {
istringstream(addJsonHeader.at("threshold")) >>threshold;
// threshold=atoi(addJsonHeader.at("threshold").c_str());//doc["frameMode"].GetString();
}
//if (doc.HasMember("threshold")) {
//if (doc["threshold"].IsInt()) {
// threshold=doc["threshold"].GetInt();
mt->setThreshold(threshold);
// }
// }
cprintf(MAGENTA, "%d\n", threshold);
xmin=0;
xmax=npx;
ymin=0;
ymax=npy;
cprintf(MAGENTA, "ROI: ");
if (addJsonHeader.find("roi")!= addJsonHeader.end()) {
istringstream(addJsonHeader.at("roi")) >> xmin >> xmax >> ymin >> ymax ;
// if (doc.HasMember("roi")) {
//if (doc["roi"].IsArray()) {
// if (doc["roi"].Size() > 0 )
// if (doc["roi"][0].IsInt())
// xmin=doc["roi"][0].GetInt();
// if (doc["roi"].Size() > 1 )
// if (doc["roi"][1].IsInt())
// xmax=doc["roi"][1].GetInt();
// if (doc["roi"].Size() > 2 )
// if (doc["roi"][2].IsInt())
// ymin=doc["roi"][2].GetInt();
// if (doc["roi"].Size() > 3 )
// if (doc["roi"][3].IsInt())
// ymax=doc["roi"][3].GetInt();
// }
}
cprintf(MAGENTA, "%d %d %d %d\n", xmin, xmax, ymin, ymax);
mt->setROI(xmin, xmax, ymin, ymax);
if (addJsonHeader.find("dynamicRange")!= addJsonHeader.end()) {
istringstream(addJsonHeader.at("dynamicRange")) >> dr ;
dr=32;
}
// if (doc.HasMember("dynamicRange")) {
// dr=doc["dynamicRange"].GetUint();
// dr=32;
// }
dMode=eAnalog;
detectorMode_s="analog";
cprintf(MAGENTA, "Detector mode: ");
if (addJsonHeader.find("detectorMode")!= addJsonHeader.end()) {;
//if (doc.HasMember("detectorMode")) {
//if (doc["detectorMode"].IsString()) {
detectorMode_s=addJsonHeader.at("detectorMode");//=doc["detectorMode"].GetString();
#ifdef INTERP
if (detectorMode_s == "interpolating"){
dMode=eInterpolating;
mt->setInterpolation(interp);
} else
#endif
if (detectorMode_s == "counting"){
dMode=ePhotonCounting;
#ifdef INTERP
mt->setInterpolation(NULL);
#endif
} else {
dMode=eAnalog;
#ifdef INTERP
mt->setInterpolation(NULL);
#endif
}
// }
}
mt->setDetectorMode(dMode);
cprintf(MAGENTA, "%s\n" , detectorMode_s.c_str());
// cout << "done " << endl;
// /* Single Photon Detector commands */
// nSigma=5;
// if (doc.HasMember("nSigma")) {
// if (doc["nSigma"].IsInt())
// nSigma=doc["nSigma"].GetInt();
// mt->setNSigma(nSigma);
// }
// emin=-1;
// emax=-1;
// if (doc.HasMember("energyRange")) {
// if (doc["energyRange"].IsArray()) {
// if (doc["energyRange"].Size() > 0 )
// if (doc["energyRange"][0].IsInt())
// emin=doc["energyRange"][0].GetInt();
// if (doc["energyRange"].Size() > 1 )
// if (doc["energyRange"][1].IsInt())
// emax=doc["energyRange"][1].GetUint();
// }
// }
// if (doc.HasMember("eMin")) {
// if (doc["eMin"][1].IsInt())
// emin=doc["eMin"].GetInt();
// }
// if (doc.HasMember("eMax")) {
// if (doc["eMax"][1].IsInt())
// emin=doc["eMax"].GetInt();
// }
// mt->setEnergyRange(emin,emax);
// /* interpolating detector commands */
// if (doc.HasMember("nSubPixels")) {
// if (doc["nSubPixels"].IsUint())
// nSubPixels=doc["nSubPixels"].GetUint();
// mt->setNSubPixels(nSubPixels);
// }
// threshold=0;
// cprintf(MAGENTA, "Subframes: ");
// subframes=0;
// //isubframe=0;
// insubframe=0;
// subnorm=1;
// f0=0;
// nnsubframe=0;
// if (doc.HasMember("subframes")) {
// if (doc["subframes"].IsInt()) {
// subframes=doc["subframes"].GetInt();
// }
// }
// cprintf(MAGENTA, "%ld\n", subframes);
newFrame=0;
/* zmqsocket->CloseHeaderMessage();*/
}
#endif
// cout << "file" << endl;
// cout << "data " << endl;
if (of==NULL) {
#ifdef WRITE_QUAD
sprintf(ofname,"%s_%ld.clust2",filename.c_str(),fileindex);
#endif
#ifndef WRITE_QUAD
sprintf(ofname,"%s_%ld.clust",filename.c_str(),fileindex);
#endif
of=fopen(ofname,"w");
if (of) {
mt->setFilePointer(of);
}else {
cout << "Could not open "<< ofname << " for writing " << endl;
mt->setFilePointer(NULL);
}
}
// cout << "data" << endl;
// get data
// acqIndex = doc["acqIndex"].GetUint64();
frameIndex = zHeader.frameIndex;////doc["fIndex"].GetUint64();
// subFrameIndex = doc["expLength"].GetUint();
// bunchId=doc["bunchId"].GetUint();
// timestamp=doc["timestamp"].GetUint();
packetNumber=zHeader.packetNumber; //doc["packetNumber"].GetUint();
// cout << acqIndex << " " << frameIndex << " " << subFrameIndex << " "<< bunchId << " " << timestamp << " " << packetNumber << endl;
//cprintf(GREEN, "frame\n");
if (packetNumber>=40) {
//*((int*)buff)=frameIndex;
if (insubframe==0) f0=frameIndex;
memcpy(buff,&frameIndex,sizeof(int));
//length =
zmqsocket->ReceiveData(0, buff+sizeof(int), size);
mt->pushData(buff);
mt->nextThread();
mt->popFree(buff);
insubframe++;
nsubframes=frameIndex+1-f0;
} else {
cprintf(RED, "Incomplete frame: received only %d packet\n", packetNumber);
//length =
zmqsocket->ReceiveData(0, dummybuff, size);
}
if (subframes>0 && insubframe>=subframes && fMode==eFrame) {
while (mt->isBusy()) {;}//wait until all data are processed from the queues
detimage=mt->getImage(nnx,nny,nnsx, nnsy);
cprintf(MAGENTA,"Get image!\n");
dout= new int32_t[nnx*nny];
doutf= new float[nnx*nny];
if (subframes>0 && insubframe!=subframes && insubframe>0)
subnorm=((double)subframes)/((double)insubframe);
else
subnorm=1.;
for (int ix=0; ix<nnx*nny; ix++) {
dout[ix]=detimage[ix]*subnorm;
if (dout[ix]<0) dout[ix]=0;
doutf[ix]=dout[ix];
}
sprintf(ofname,"%s_sf%ld_%ld.tiff",fname.c_str(),nnsubframe,fileindex);
cout << "Writing image to " << ofname << endl;
WriteToTiff(doutf,ofname ,nnx, nny);
nsubframes++;
insubframe=0;
nnsubframe++;
// zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 1,1,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,&additionalJsonHeader);
zHeader.data = true;
zmqsocket2->SendHeader(0,zHeader);
zmqsocket2->SendData((char*)dout,nnx*nny*dr/8);
cprintf(GREEN, "Sent subdata\n");
if (dout)
delete [] dout;
dout=NULL;
if (doutf)
delete [] doutf;
doutf=NULL;
mt->clearImage();
}
iframe++;
} // exiting infinite loop
delete zmqsocket;
if (send)
delete zmqsocket2;
cout<<"Goodbye"<< endl;
return 0;
}
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