mirror of
https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2025-04-21 19:30:03 +02:00
1ed2ba63b5
git-svn-id: file:///afs/psi.ch/project/sls_det_software/svn/slsDetectorSoftware@697 951219d9-93cf-4727-9268-0efd64621fa3
863 lines
17 KiB
C++
863 lines
17 KiB
C++
#include "postProcessing.h"
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#include "postProcessingFuncs.h"
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#include "angleConversionConstant.h"
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#ifdef VERBOSE
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#include "usersFunctions.h"
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#elif EXTPP
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#include "usersFunctions.h"
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#endif
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static void* startProcessData(void *n){\
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postProcessing *myDet=(postProcessing*)n;\
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myDet->processData(1);\
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pthread_exit(NULL);\
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};
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static void* startProcessDataNoDelete(void *n){\
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postProcessing *myDet=(postProcessing*)n;\
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myDet->processData(0);\
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pthread_exit(NULL);\
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};
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postProcessing::postProcessing(): expTime(NULL), ang(NULL), val(NULL), err(NULL), numberOfChannels(0), badChannelMask(NULL){
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pthread_mutex_t mp1 = PTHREAD_MUTEX_INITIALIZER;
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mp=mp1;
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pthread_mutex_init(&mp, NULL);
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mg=mp1;
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pthread_mutex_init(&mg, NULL);
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//cout << "reg callback "<< endl;
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dataReady = 0;
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pCallbackArg = 0;
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//cout << "done "<< endl;
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rawDataReady = 0;
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pRawDataArg = 0;
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#ifdef VERBOSE
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registerDataCallback(&defaultDataReadyFunc, NULL);
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#endif
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#ifdef EXTPP
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registerRawDataCallback(&defaultRawDataReadyFunc, NULL);
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#endif
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ppFun=new postProcessingFuncs();
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}
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postProcessing::~postProcessing(){
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delete ppFun;
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};
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void postProcessing::processFrame(int *myData, int delflag) {
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string fname;
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// double *fdata=NULL;
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#ifdef VERBOSE
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cout << "start processing"<< endl;
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#endif
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incrementProgress();
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#ifdef VERBOSE
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cout << "prog incremented"<< endl;
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#endif
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/** decode data */
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// if (getDetectorsType()==MYTHEN) {
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fdata=decodeData(myData, fdata);
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#ifdef VERBOSE
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cout << "decode"<< endl;
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#endif
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//} else
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// fdata=NULL;
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if (rawDataReady) {
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#ifdef VERBOSE
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cout << "raw data ready..." << endl;
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#endif
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rawDataReady(fdata,numberOfChannels, pRawDataArg);
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#ifdef VERBOSE
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cout << "done" << endl;
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cout << "NO FILE WRITING AND/OR DATA PROCESSING DONE BY SLS DETECTOR SOFTWARE!!!" << endl;
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#endif
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} else {
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pthread_mutex_lock(&mp);
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fname=createFileName();
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pthread_mutex_unlock(&mp);
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#ifdef VERBOSE
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cout << "fname is " << fname << endl;
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#endif
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//Checking for write flag
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if((*correctionMask)&(1<<WRITE_FILE)) {
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#ifdef VERBOSE
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cout << "writing raw data " << endl;
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#endif
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if (getDetectorsType()==MYTHEN){
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// if (fdata) {
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//uses static function?!?!?!?
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// cout << "write to file?!?!?!?" << endl;
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writeDataFile (fname+string(".raw"),fdata, NULL, NULL, 'i');
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} else {
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writeDataFile ((void*)myData, currentFrameIndex);
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}
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#ifdef VERBOSE
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cout << "done " << endl;
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#endif
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}
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if ((*correctionMask) & ~(1<<WRITE_FILE)) {
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doProcessing(fdata,delflag, fname);
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} else
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if (dataReady){
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cout << "callback arg "<< getCurrentProgress()<< " " << (fname+string(".raw")).c_str() << " " << getTotalNumberOfChannels() << endl;
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thisData=new detectorData(fdata,NULL,NULL,getCurrentProgress(),(fname+string(".raw")).c_str(),getTotalNumberOfChannels());
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dataReady(thisData, currentFrameIndex, pCallbackArg);
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delete thisData;
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fdata=NULL;
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}
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}
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incrementCurrentFrameIndex();
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if (getFrameIndex()>=0){
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if (getDetectorsType()==MYTHEN)
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incrementFrameIndex(1);
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else if((currentFrameIndex%getFramesPerFile())==0)
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incrementFrameIndex(getFramesPerFile());
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}
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delete [] myData;
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if (fdata)
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delete [] fdata;
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myData=NULL;
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fdata=NULL;
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#ifdef VERBOSE
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cout << "Pop data queue " << *fileIndex << endl;
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#endif
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popDataQueue(); //remove the data from the queue
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#ifdef VERBOSE
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cout << "Data queue popped" << endl;
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#endif
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#ifdef VERBOSE
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cout << "process frame returning " << endl;
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#endif
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}
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void postProcessing::doProcessing(double *lfdata, int delflag, string fname) {
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#ifdef VERBOSE
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cout << "do processing - data size is " << arraySize << endl;
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#endif
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int np;
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#ifdef VERBOSE
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cout << "arrays allocated " << endl;
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#endif
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int npos=getNumberOfPositions();
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string ext=".dat";
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#ifdef VERBOSE
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cout << "npos is "<< npos << endl;
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#endif
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double t=0;
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if (expTime)
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t=(*expTime)*1E-9;
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else
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cout << "no pointer to exptime" << endl;
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#ifdef VERBOSE
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cout << "exptime is "<< t << endl;
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#endif
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if (GetCurrentPositionIndex()<=1 || npos<2) {
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#ifdef VERBOSE
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cout << "init dataset" << endl;
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#endif
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if (*correctionMask&(1<< ANGULAR_CONVERSION))
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ang=new double[arraySize];
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else
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ang=NULL;
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val=new double[arraySize];
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err=new double[arraySize];
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initDataset(0);
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}
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#ifdef VERBOSE
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cout << "add frame" << endl;
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#endif
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addFrame(lfdata,currentPosition, currentI0, t, fname, 0);
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if ((GetCurrentPositionIndex()>=npos && positionFinished() && dataQueueSize()) || npos<2) {
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#ifdef VERBOSE
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cout << "finalize dataset" << endl;
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#endif
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finalizeDataset(ang, val, err, np);
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//if (npos<2) {
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IncrementPositionIndex();
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pthread_mutex_lock(&mp);
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fname=createFileName();
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pthread_mutex_unlock(&mp);
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//}
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if((*correctionMask)&(1<<WRITE_FILE)) {
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writeDataFile (fname+ext,np,val, err,ang,'f');
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}
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if (dataReady) {
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cout << "callback arg "<< getCurrentProgress()<< " " << (fname+ext).c_str() << " " << np << endl;
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thisData=new detectorData(val,err,ang,getCurrentProgress(),(fname+ext).c_str(),np);
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dataReady(thisData, currentFrameIndex, pCallbackArg);
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delete thisData;
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ang=NULL;
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val=NULL;
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err=NULL;
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}
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if (ang)
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delete [] ang;
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if (val)
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delete [] val;
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if (err)
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delete [] err;
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}
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}
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int postProcessing::fillBadChannelMask() {
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#ifdef VERBOSE
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cout << "pp fill bad channel mask " << endl;
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#endif
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int nbad=0, nb;
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//#define VERBOSE
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if (*correctionMask&(1<< DISCARD_BAD_CHANNELS)) {
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nbad=getBadChannelCorrection();
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#ifdef VERBOSE
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cout << "number of bad channels is " << nbad << endl;
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#endif
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nb=nbad;
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if (nbad>0) {
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int *badChansList=new int[nbad];
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#ifdef VERBOSE
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cout << "get badch array " << nbad << endl;
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#endif
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getBadChannelCorrection(badChansList);
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#ifdef VERBOSE
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cout << "done " << nbad << endl;
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#endif
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if (badChannelMask)
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delete [] badChannelMask;
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//#ifdef VERBOSE
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cout << " nchans " << getTotalNumberOfChannels() << endl;
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//#endif
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badChannelMask=new int[getTotalNumberOfChannels()];
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#ifdef VERBOSE
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cout << " pointer to bad channel mask is " << badChannelMask << endl;
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#endif
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for (int ichan=0; ichan<getTotalNumberOfChannels(); ichan++)
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badChannelMask[ichan]=0;
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#ifdef VERBOSE
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cout << " badChanMask has be reset" << badChannelMask << endl;
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#endif
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for (int ichan=0; ichan<nb; ichan++) {
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if (badChansList[ichan]<getTotalNumberOfChannels() && badChansList[ichan]>=0 ) {
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if (badChannelMask[badChansList[ichan]]==0) {
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badChannelMask[badChansList[ichan]]=1;
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// cout << "bad: " << ichan << " " << badChansList[ichan] << endl;
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} else
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nbad--;
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}
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}
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delete [] badChansList;
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} else {
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if (badChannelMask) {
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#ifdef VERBOSE
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cout << "deleting bad channel mask beacuse number of bad channels is 0" << endl;
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#endif
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delete [] badChannelMask;
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badChannelMask=NULL;
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}
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}
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} else {
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#ifdef VERBOSE
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cout << "bad channel correction is disabled " << nbad << endl;
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#endif
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if (badChannelMask) {
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#ifdef VERBOSE
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cout << "deleting bad channel mask beacuse no bad channel correction is selected" << endl;
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#endif
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//delete [] badChannelMask;
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//badChannelMask=NULL;
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}
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}
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#ifdef VERBOSE
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cout << "number of bad channels is " << nbad << endl;
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#endif
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return nbad;
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}
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void* postProcessing::processData(int delflag) {
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if(setReceiverOnline()==OFFLINE_FLAG){
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#ifdef VERBOSE
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std::cout<< " processing data - threaded mode " << *threadedProcessing << endl;
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#endif
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queuesize=dataQueueSize();
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int *myData;
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int dum=1;
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fdata=NULL;
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while(dum | *threadedProcessing) { // ????????????????????????
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/* IF THERE ARE DATA PROCESS THEM*/
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while((queuesize=dataQueueSize())>0) {
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/** Pop data queue */
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#ifdef VERBOSE
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cout << "data found"<< endl<<endl;;
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#endif
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myData=dataQueueFront(); // get the data from the queue
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#ifdef VERBOSE
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cout << "got them"<< endl;
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#endif
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if (myData) {
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processFrame(myData,delflag);
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}
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}
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/* IF THERE ARE NO DATA look if acquisition is finished */
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if (checkJoinThread()) {
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if (dataQueueSize()==0) {
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break;
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}
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}
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dum=0;
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}
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if (fdata) {
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delete [] fdata;
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}
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}
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//receiver
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else{
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/*
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//without gui loop
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while(1){
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if (checkJoinThread()) break;
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usleep(200000);
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}
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*/
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/*if(setReadReceiverFrequency()>0)) ******Not implemented yet ********
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* else
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*/
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int prevCaught=-1;
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int caught = 0;
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int prog = 0;
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bool newData=false;
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char currentfName[MAX_STR_LENGTH]="";
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int currentfIndex=0;
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int read_freq = setReadReceiverFrequency(0);
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#ifdef VERBOSE
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std::cout << "receiver read freq:" << read_freq << std::endl;
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#endif
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//always read nth data
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if (read_freq != 0){
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newData = true;
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if (!dataReady){
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std::cout << "Error: receiver read freq should be > 0 only when using gui." << std::endl;
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std::cout << "Current receiver read frequency: " << read_freq << std::endl;
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}
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}
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while(1){
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cout.flush();
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cout<<flush;
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usleep(20000);
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//get progress
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pthread_mutex_lock(&mg);
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if(setReceiverOnline()==ONLINE_FLAG)
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prog=getReceiverCurrentFrameIndex();//getFramesCaughtByReceiver();//caught=getReceiverCurrentFrameIndex();
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pthread_mutex_unlock(&mg);
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if(setReceiverOnline()==OFFLINE_FLAG)
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prog=prevCaught;
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if(prevCaught == -1)
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setCurrentProgress(0);
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else
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setCurrentProgress(prog);
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if (checkJoinThread()) break;
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if (dataReady){
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// new Data? for random read
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if (!read_freq){
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caught = prog;
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if (caught > prevCaught)
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newData=true;
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else
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newData=false;
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#ifdef VERBOSE
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std::cout << "caught:" << caught << " prevcaught:" << prevCaught << " newData:" << newData << std::endl;
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#endif
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prevCaught=caught;
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}
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//read frame if new data or nth frame reading
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if (newData){
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if(setReceiverOnline()==ONLINE_FLAG){
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//get data
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strcpy(currentfName,"");
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pthread_mutex_lock(&mg);
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int* receiverData = readFrameFromReceiver(currentfName,currentfIndex);//if(currentfIndex!=-1)cout<<"--currentfIndex:"<<currentfIndex<<endl;
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pthread_mutex_unlock(&mg);
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//if detector returned null
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if(setReceiverOnline()==OFFLINE_FLAG)
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receiverData = NULL;
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if(receiverData == NULL){
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currentfIndex = -1;
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cout<<"****Detector Data returned is NULL***"<<endl;
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}
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// determine if new Data for nth frame read
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if (read_freq){
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caught = currentfIndex;
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#ifdef VERBOSE
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std::cout << "caught:" << caught << " prevcaught:" << prevCaught << std::endl;
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#endif
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//delete if not new data
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if((caught == prevCaught) || (caught == -1))
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currentfIndex = -1;
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else
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prevCaught=caught;
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}
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//not garbage frame
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if (currentfIndex >= 0) {
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fdata = decodeData(receiverData);
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delete [] receiverData;
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if ((fdata) && (dataReady)){
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thisData = new detectorData(fdata,NULL,NULL,getCurrentProgress(),currentfName,getTotalNumberOfChannels());
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dataReady(thisData, currentfIndex, pCallbackArg);
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delete thisData;
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fdata = NULL;
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}
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}
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else{
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;//cout<<"****Detector returned mismatched indices/garbage or acquisition is over. Trying again.***"<<endl;
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}
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}
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}
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}
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}
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}
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return 0;
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}
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int postProcessing::checkJoinThread() {
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int retval;
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pthread_mutex_lock(&mp);
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retval=jointhread;
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pthread_mutex_unlock(&mp);
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return retval;
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}
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void postProcessing::setJoinThread( int v) {
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pthread_mutex_lock(&mp);
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jointhread=v;
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pthread_mutex_unlock(&mp);
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}
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int* postProcessing::dataQueueFront() {
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int *retval=NULL;
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pthread_mutex_lock(&mp);
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if( !dataQueue.empty() ) {
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retval=dataQueue.front();
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}
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pthread_mutex_unlock(&mp);
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return retval;
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}
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int postProcessing::dataQueueSize() {
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int retval;
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#ifdef VERBOSE
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cout << "data queue size lock" << endl;
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#endif
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pthread_mutex_lock(&mp);
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retval=dataQueue.size();
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pthread_mutex_unlock(&mp);
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#ifdef VERBOSE
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cout << "data queue size unlock" << endl;
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#endif
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return retval;
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}
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int* postProcessing::popDataQueue() {
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int *retval=NULL;
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#ifdef VERBOSE
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cout << "Pop data queue lock" << endl;
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#endif
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pthread_mutex_lock(&mp);
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if( !dataQueue.empty() ) {
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retval=dataQueue.front();
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dataQueue.pop();
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}
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queuesize=dataQueue.size();
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pthread_mutex_unlock(&mp);
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#ifdef VERBOSE
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cout << "Pop data queue lock" << endl;
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#endif
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return retval;
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}
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// detectorData* postProcessing::popFinalDataQueue() {
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|
// detectorData *retval=NULL;
|
|
// pthread_mutex_unlock(&mg);
|
|
// if( !finalDataQueue.empty() ) {
|
|
// retval=finalDataQueue.front();
|
|
// finalDataQueue.pop();
|
|
// }
|
|
// pthread_mutex_unlock(&mg);
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|
// return retval;
|
|
// }
|
|
|
|
void postProcessing::resetDataQueue() {
|
|
int *retval=NULL;
|
|
pthread_mutex_lock(&mp);
|
|
while( !dataQueue.empty() ) {
|
|
retval=dataQueue.front();
|
|
dataQueue.pop();
|
|
delete [] retval;
|
|
}
|
|
pthread_mutex_unlock(&mp);
|
|
|
|
}
|
|
|
|
// void postProcessing::resetFinalDataQueue() {
|
|
// detectorData *retval=NULL;
|
|
// pthread_mutex_lock(&mg);
|
|
// while( !finalDataQueue.empty() ) {
|
|
// retval=finalDataQueue.front();
|
|
// finalDataQueue.pop();
|
|
// delete retval;
|
|
// }
|
|
// pthread_mutex_unlock(&mg);
|
|
// }
|
|
void postProcessing::initDataset(int r) {
|
|
|
|
if (r) {
|
|
|
|
int nmod=getNMods();
|
|
int *chPM=new int[nmod];
|
|
int *mM=new int[nmod];
|
|
int totch=0;
|
|
#ifdef VERBOSE
|
|
cout << "init dataset stuff" << endl;
|
|
#endif
|
|
|
|
for (int im=0; im<nmod; im++) {
|
|
#ifdef VERBOSE
|
|
cout << "MODULE " << im << endl;
|
|
#endif
|
|
chPM[im]=getChansPerMod(im);
|
|
#ifdef VERBOSE
|
|
cout << "chanspermod" << endl;
|
|
#endif
|
|
mM[im]=getMoveFlag(im);
|
|
#ifdef VERBOSE
|
|
cout << "moveflag" << im << " " << mM[im] << endl;
|
|
#endif
|
|
totch+=chPM[im];
|
|
}
|
|
|
|
|
|
// uncomment if to be used with antonio's funcs!!!
|
|
//fillModuleMask(mM);
|
|
|
|
|
|
|
|
#ifdef VERBOSE
|
|
cout << "total channels is " << totch << endl;
|
|
#endif
|
|
double *ffcoeff=NULL, *fferr=NULL;
|
|
|
|
if (*correctionMask&(1<<FLAT_FIELD_CORRECTION)) {
|
|
#ifdef VERBOSE
|
|
cout << "get ff " << endl;
|
|
#endif
|
|
ffcoeff=new double[totch];
|
|
fferr=new double[totch];
|
|
|
|
getFlatFieldCorrection(ffcoeff,fferr);
|
|
}
|
|
|
|
double tdead;
|
|
if (*correctionMask&(1<<RATE_CORRECTION)) {
|
|
#ifdef VERBOSE
|
|
cout << "get tau " << endl;
|
|
#endif
|
|
tdead=getRateCorrectionTau();
|
|
} else
|
|
tdead=0;
|
|
|
|
|
|
int angdir=getAngularDirection();
|
|
|
|
double to=0;
|
|
double bs=0;
|
|
double sx=0, sy=0;
|
|
double *angRad=NULL;
|
|
double *angOff=NULL;
|
|
double *angCenter=NULL;
|
|
angleConversionConstant *p=NULL;
|
|
|
|
if (*correctionMask&(1<< ANGULAR_CONVERSION)) {
|
|
#ifdef VERBOSE
|
|
cout << "get angconv " << endl;
|
|
#endif
|
|
bs=getBinSize();
|
|
to=getGlobalOffset()+getFineOffset();
|
|
angRad=new double[nmod];
|
|
angOff=new double[nmod];
|
|
angCenter=new double[nmod];
|
|
for (int im=0; im<nmod; im++) {
|
|
p=getAngularConversionPointer(im);
|
|
angRad[im]=p->r_conversion;
|
|
angOff[im]=p->offset;
|
|
angCenter[im]=p->center;
|
|
|
|
#ifdef VERBOSE
|
|
cout << im << " " << angCenter[im] << " " << angRad[im] << " " << angOff[im] << endl;
|
|
#endif
|
|
|
|
|
|
}
|
|
sx=getAngularConversionParameter(SAMPLE_X);
|
|
sy=getAngularConversionParameter(SAMPLE_Y);
|
|
|
|
}
|
|
|
|
|
|
#ifdef VERBOSE
|
|
cout << "init dataset" << endl;
|
|
#endif
|
|
// cout << "pp bad channel mask " << badChannelMask << endl;
|
|
fillBadChannelMask();
|
|
// cout << "pp bad channel mask " << badChannelMask << endl;
|
|
|
|
ppFun->initDataset(&nmod,chPM,mM,badChannelMask, ffcoeff, fferr, &tdead, &angdir, angRad, angOff, angCenter, &to, &bs, &sx, &sy);
|
|
|
|
#ifdef VERBOSE
|
|
cout << "done" << endl;
|
|
#endif
|
|
|
|
|
|
if (*correctionMask&(1<< ANGULAR_CONVERSION)) {
|
|
arraySize=getNumberOfAngularBins();
|
|
if (arraySize<=0)
|
|
arraySize=totch;
|
|
} else {
|
|
arraySize=totch;
|
|
}
|
|
|
|
numberOfChannels=totch;
|
|
|
|
queuesize=dataQueueSize();
|
|
|
|
// resetFinalDataQueue();
|
|
resetDataQueue();
|
|
|
|
|
|
} else {
|
|
|
|
cout << "implicit inti dataset! " << endl;
|
|
|
|
ppFun->initDataset();
|
|
|
|
|
|
}
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
void postProcessing::addFrame(double *data, double pos, double i0, double t, string fname, double var) {
|
|
ppFun->addFrame(data, &pos, &i0, &t, fname.c_str(), &var);
|
|
|
|
}
|
|
|
|
void postProcessing::finalizeDataset(double *a, double *v, double *e, int &np) {
|
|
|
|
ppFun->finalizeDataset(a, v, e, &np);
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
void postProcessing::startThread(int delflag) {
|
|
|
|
/////////////////////////////////// Initialize dataset
|
|
|
|
//resetDataQueue();
|
|
|
|
setTotalProgress();
|
|
|
|
initDataset(1);
|
|
|
|
/////////////////////////////////// Start thread ////////////////////////////////////////////////////////
|
|
#ifdef VERBOSE
|
|
cout << "start thread stuff" << endl;
|
|
#endif
|
|
|
|
pthread_attr_t tattr;
|
|
int ret;
|
|
sched_param param, mparam;
|
|
int policy= SCHED_OTHER;
|
|
|
|
// set the priority; others are unchanged
|
|
//newprio = 30;
|
|
mparam.sched_priority =1;
|
|
param.sched_priority =1;
|
|
|
|
|
|
/* Initialize and set thread detached attribute */
|
|
pthread_attr_init(&tattr);
|
|
pthread_attr_setdetachstate(&tattr, PTHREAD_CREATE_JOINABLE);
|
|
|
|
|
|
|
|
// param.sched_priority = 5;
|
|
// scheduling parameters of main thread
|
|
ret = pthread_setschedparam(pthread_self(), policy, &mparam);
|
|
|
|
//#ifdef VERBOSE
|
|
// printf("current priority is %d\n",param.sched_priority);
|
|
//#endif
|
|
if (delflag)
|
|
ret = pthread_create(&dataProcessingThread, &tattr,startProcessData, (void*)this);
|
|
else
|
|
ret = pthread_create(&dataProcessingThread, &tattr,startProcessDataNoDelete, (void*)this);
|
|
|
|
pthread_attr_destroy(&tattr);
|
|
|
|
// scheduling parameters of target thread
|
|
ret = pthread_setschedparam(dataProcessingThread, policy, ¶m);
|
|
|
|
}
|
|
|
|
|
|
|