\documentclass[a4paper]{article}
\usepackage{makeidx}
\usepackage{graphicx}
\usepackage{multicol}
\usepackage{float}
\usepackage{listings}
\usepackage{color}
\usepackage{textcomp}
\usepackage{alltt}
\usepackage{times}
\usepackage{ifpdf}
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\usepackage[utf8]{inputenc}
\usepackage{doxygen}
\lstset{language=C++,inputencoding=utf8,basicstyle=\footnotesize,breaklines=true,breakatwhitespace=true,tabsize=8,numbers=left }
\makeindex
\setcounter{tocdepth}{3}
\renewcommand{\footrulewidth}{0.4pt}
\begin{document}
\hypersetup{pageanchor=false}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large Reference Manual}\\
\vspace*{1cm}
{\large Generated by Doxygen 1.6.1}\\
\vspace*{0.5cm}
{\small Thu Aug 17 17:12:14 2017}\\
\end{center}
\end{titlepage}
\pagenumbering{roman}
\tableofcontents
\pagenumbering{arabic}
\hypersetup{pageanchor=true}
\section{Introduction}
\label{index}\hypertarget{index}{}\input{index}
\section{Developer}
\label{test}
\hypertarget{test}{}
\input{test}
\section{Acquition commands}
\label{acquisition}
\hypertarget{acquisition}{}
\input{acquisition}
\section{Configuration commands}
\label{config}
\hypertarget{config}{}
\input{config}
\section{Timing commands}
\label{timing}
\hypertarget{timing}{}
\input{timing}
\section{Data processing commands}
\label{data}
\hypertarget{data}{}
\input{data}
\section{Detector settings commands}
\label{settings}
\hypertarget{settings}{}
\input{settings}
\section{Output settings}
\label{output}
\hypertarget{output}{}
\input{output}
\section{Actions}
\label{actions}
\hypertarget{actions}{}
\input{actions}
\section{Network}
\label{network}
\hypertarget{network}{}
\input{network}
\section{Receiver commands}
\label{receiver}
\hypertarget{receiver}{}
\input{receiver}
\section{Chiptest board}
\label{ctb}
\hypertarget{ctb}{}
\input{ctb}
\section{Advanced Usage}
\label{advanced}
\hypertarget{advanced}{}
\input{advanced}
\printindex
\end{document}