removed Makefile for moench and integrated the build in CMake

.clang-tidy

@@ -19,7 +19,6 @@ Checks:          '*,
                     -google-readability-braces-around-statements,
                     -modernize-use-trailing-return-type,
                     -readability-isolate-declaration,
-                    -readability-implicit-bool-conversion,
                     -llvmlibc-*'
 
 HeaderFilterRegex: \.h

CMakeLists.txt

@@ -8,8 +8,11 @@ set(CMAKE_CXX_FLAGS_RELEASE "-O3 -DNDEBUG")
 
 cmake_policy(SET CMP0074 NEW)
 include(cmake/project_version.cmake)
+
+#functions to add compiler flags
 include(cmake/SlsAddFlag.cmake)
-include(cmake/SlsFindZeroMQ.cmake)
+
+# Include additional modules that are used unconditionally
 include(GNUInstallDirs)
 
 # If conda build, always set lib dir to 'lib'
@@ -23,7 +26,7 @@ string(TOLOWER "${PROJECT_NAME}" PROJECT_NAME_LOWER)
 
 # Set targets export name (used by slsDetectorPackage and dependencies)
 set(TARGETS_EXPORT_NAME "${PROJECT_NAME_LOWER}-targets")
-set(namespace "sls::")
+#set(namespace "${PROJECT_NAME}::")
 
 set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
 
@@ -34,8 +37,6 @@ if (CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_SOURCE_DIR)
     set(SLS_MASTER_PROJECT ON)
 endif()
 
-
-
 option(SLS_USE_HDF5 "HDF5 File format" OFF)
 option(SLS_BUILD_SHARED_LIBRARIES "Build shared libaries" ON)
 option(SLS_USE_TEXTCLIENT "Text Client" ON)
@@ -68,20 +69,6 @@ if(SLS_BUILD_ONLY_MOENCH)
 endif()
 
 
-option(SLS_EXT_BUILD "external build of part of the project" OFF)
-if(SLS_EXT_BUILD)
-    message(STATUS "External build using already installed libraries")
-    set(SLS_BUILD_SHARED_LIBRARIES OFF CACHE BOOL "Should already exist" FORCE)
-    set(SLS_USE_TEXTCLIENT OFF CACHE BOOL "Should already exist" FORCE)
-    set(SLS_USE_DETECTOR OFF CACHE BOOL "Should already exist" FORCE)
-    set(SLS_USE_RECEIVER OFF CACHE BOOL "Should already exist" FORCE)
-    set(SLS_USE_RECEIVER_BINARIES OFF CACHE BOOL "Should already exist" FORCE)
-    set(SLS_MASTER_PROJECT OFF CACHE BOOL "No master proj in case of extbuild" FORCE) 
-endif()
-
-#Maybe have an option guarding this?
-set(SLS_INTERNAL_RAPIDJSON_DIR ${CMAKE_CURRENT_SOURCE_DIR}/libs/rapidjson)
-
 set(ClangFormat_EXCLUDE_PATTERNS    "build/" 
                                     "libs/" 
                                     "slsDetectorCalibration/" 
@@ -92,6 +79,9 @@ set(ClangFormat_EXCLUDE_PATTERNS    "build/"
                                     ${CMAKE_BINARY_DIR})
 find_package(ClangFormat)
 
+
+
+
 set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
 
 if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
@@ -110,68 +100,62 @@ else()
 endif()
 
 
-if(SLS_EXT_BUILD)
+#Add two fake libraries to manage options
-    # Find ourself in case of external build
+add_library(slsProjectOptions INTERFACE)
-    find_package(slsDetectorPackage ${PROJECT_VERSION} REQUIRED)
+add_library(slsProjectWarnings INTERFACE)
-endif()
+target_compile_features(slsProjectOptions INTERFACE cxx_std_11)
+target_compile_options(slsProjectWarnings INTERFACE 
+                                            -Wall
+                                            -Wextra
+                                            -Wno-unused-parameter
+                                            # -Wold-style-cast
+                                            -Wnon-virtual-dtor
+                                            -Woverloaded-virtual
+                                            -Wdouble-promotion
+                                            -Wformat=2
+                                            -Wredundant-decls
+                                            # -Wconversion
+                                            -Wvla
+                                            -Wdouble-promotion
+                                            -Werror=return-type
+                                 )
+
+#Settings for C code
+add_library(slsProjectCSettings INTERFACE)
+target_compile_options(slsProjectCSettings INTERFACE 
+                                            -std=gnu99 #fixed
+                                            -Wall
+                                            -Wextra
+                                            -Wno-unused-parameter
+                                            -Wdouble-promotion
+                                            -Wformat=2
+                                            -Wredundant-decls
+                                            -Wdouble-promotion
+                                            -Werror=return-type
+                                )
 
 
-
+#Testing for minimum version for compilers
-# slsProjectOptions and slsProjectWarnings are used
+if ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")
-# to control options for the libraries
+    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 3.2)
-if(NOT TARGET slsProjectOptions)
+        message(FATAL_ERROR "Clang version must be at least 3.2!")
-    add_library(slsProjectOptions INTERFACE)
+    endif()
-    target_compile_features(slsProjectOptions INTERFACE cxx_std_11)
+elseif ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
-endif()
+    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 4.8)
-
+            message(FATAL_ERROR "GCC version must be at least 4.8!")
-if (NOT TARGET slsProjectWarnings)
+    endif()
-    add_library(slsProjectWarnings INTERFACE)
+    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5)
-    target_compile_options(slsProjectWarnings INTERFACE 
+            target_compile_options(slsProjectWarnings INTERFACE 
-        -Wall
+                                             -Wno-missing-field-initializers)
-        -Wextra
-        -Wno-unused-parameter
-        # -Wold-style-cast
-        -Wnon-virtual-dtor
-        -Woverloaded-virtual
-        -Wdouble-promotion
-        -Wformat=2
-        -Wredundant-decls
-        # -Wconversion
-        -Wvla
-        -Wdouble-promotion
-        -Werror=return-type
-    )
-    # Add or disable warnings depending on if the compiler supports them 
-    # The function checks internally and sets HAS_warning-name
-    sls_enable_cxx_warning("-Wnull-dereference")
-    sls_enable_cxx_warning("-Wduplicated-cond")
-    sls_disable_cxx_warning("-Wclass-memaccess")
-
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5 AND "${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
-            target_compile_options(slsProjectWarnings INTERFACE 
-                                                -Wno-missing-field-initializers)
     endif()
-
-
 endif()
 
-
+# Add or disable warnings depending on if the compiler supports them 
-if (NOT TARGET slsProjectCSettings)
+# The function checks internally and sets HAS_warning-name
-    #Settings for C code
+sls_enable_cxx_warning("-Wnull-dereference")
-    add_library(slsProjectCSettings INTERFACE)
+sls_enable_cxx_warning("-Wduplicated-cond")
-    target_compile_options(slsProjectCSettings INTERFACE 
+sls_disable_cxx_warning("-Wclass-memaccess")
-                                                -std=gnu99 #fixed
+sls_disable_c_warning("-Wstringop-truncation")
-                                                -Wall
-                                                -Wextra
-                                                -Wno-unused-parameter
-                                                -Wdouble-promotion
-                                                -Wformat=2
-                                                -Wredundant-decls
-                                                -Wdouble-promotion
-                                                -Werror=return-type
-                                    )
-    sls_disable_c_warning("-Wstringop-truncation")
-endif()
 
 
 if(SLS_USE_SANITIZER)
@@ -186,22 +170,58 @@ if(SLS_TUNE_LOCAL)
 endif()
 
 
-if(SLS_MASTER_PROJECT)
+#rapidjson
-install(TARGETS slsProjectOptions slsProjectWarnings 
+add_library(rapidjson INTERFACE)
+target_include_directories(rapidjson INTERFACE
+    $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/libs/rapidjson>  
+)
+
+# Install fake the libraries
+install(TARGETS slsProjectOptions slsProjectWarnings rapidjson
     EXPORT "${TARGETS_EXPORT_NAME}"
     LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}
     ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}
     PUBLIC_HEADER DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}
 )
-endif()
 
 set(CMAKE_POSITION_INDEPENDENT_CODE ON)
 set(CMAKE_INSTALL_RPATH $ORIGIN)
+# set(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE)
 set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
 
 
-custom_find_zmq()
+set(ZeroMQ_HINT "" CACHE STRING "Hint where ZeroMQ could be found")
+#Adapted from: https://github.com/zeromq/cppzmq/
+if (NOT TARGET libzmq)
+    if(ZeroMQ_HINT)
+        message(STATUS "Looking for ZeroMQ in: ${ZeroMQ_HINT}")
+        find_package(ZeroMQ 4 
+            NO_DEFAULT_PATH
+            HINTS ${ZeroMQ_DIR}
+        )
+    else()
+        find_package(ZeroMQ 4 QUIET)
+    endif()
+    
+  # libzmq autotools install: fallback to pkg-config
+  if(NOT ZeroMQ_FOUND)
+    message(STATUS "CMake libzmq package not found, trying again with pkg-config (normal install of zeromq)")
+    list (APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_LIST_DIR}/libzmq-pkg-config)
+    find_package(ZeroMQ 4 REQUIRED)
+  endif()
 
+  # TODO "REQUIRED" above should already cause a fatal failure if not found, but this doesn't seem to work
+  if(NOT ZeroMQ_FOUND)
+    message(FATAL_ERROR "ZeroMQ was not found, neither as a CMake package nor via pkg-config")
+  endif()
+
+  if (ZeroMQ_FOUND AND NOT TARGET libzmq)
+    message(FATAL_ERROR "ZeroMQ version not supported!")
+  endif()
+endif()
+
+get_target_property(VAR libzmq INTERFACE_INCLUDE_DIRECTORIES)
+message(STATUS "zmq: ${VAR}")
 
 if (SLS_USE_TESTS)
     enable_testing()
@@ -209,9 +229,8 @@ if (SLS_USE_TESTS)
 endif(SLS_USE_TESTS)
 
 
-if(NOT SLS_EXT_BUILD)
+# Common functionallity to detector and receiver
-    add_subdirectory(slsSupportLib)
+add_subdirectory(slsSupportLib)
-endif()
 
 if (SLS_USE_DETECTOR OR SLS_USE_TEXTCLIENT)
     add_subdirectory(slsDetectorSoftware)
@@ -235,7 +254,7 @@ endif (SLS_USE_INTEGRATION_TESTS)
 
 if (SLS_USE_PYTHON)
     find_package (Python 3.6 COMPONENTS Interpreter Development)
-    add_subdirectory(libs/pybind11  ${CMAKE_BINARY_DIR}/bin/)
+    add_subdirectory(libs/pybind11)
     add_subdirectory(python)
 endif(SLS_USE_PYTHON)
 
@@ -256,7 +275,6 @@ if(SLS_BUILD_DOCS)
 endif(SLS_BUILD_DOCS)
 
 if(SLS_USE_MOENCH)
-    add_subdirectory(slsDetectorCalibration/tiffio)
     add_subdirectory(slsDetectorCalibration/moenchExecutables)
 endif(SLS_USE_MOENCH)
 

RELEASE.txt

@@ -1,7 +1,7 @@
-SLS Detector Package Minor Release 7.0.0 released on 25.11.2021
+SLS Detector Package Minor Release 6.1.0 released on 25.11.2021
 ===============================================================
 
-This document describes the differences between v7.0.0 and v6.x.x   
+This document describes the differences between v6.1.0 and v6.0.0.   
 
 
 
@@ -21,69 +21,10 @@ This document describes the differences between v7.0.0 and v6.x.x
 
 - Fixed minor warnings (will fix commandline print of excess packets for missing packets)
 - ctb slow adcs and any other adcs (other than temp) goes to the control Server
-- number of udp interfaces is 2 for Eiger (CHANGE IN API??)
-- added module id for virtual servers into the udp header
-- refactoring (rxr)
 - fixed patsetbit and patsetmask for moench
 - changed default vref of adc9257 to 2V for moench (from 1.33V)
-- moench and ctb - can set the starting frame number of next acquisition
+
-- mythen server kernel check incompatible (cet timezone)
+
-- rx_arping
-- rx_threadsids max is now 9 (breaking api)
-- fixed datastream disabling for eiger. Its only available in 10g mode.
-- m3 server crash (vthrehsold dac names were not provided)
-- allow vtrim to be interpolated for Eiger settings
-- m3 setThresholdEnergy and setAllThresholdEnergy was overwriting gaincaps with settings enum
-- can set localhost with virtual server with minimum configuration: (hostname localhost, rx_hostname localhost, udp_dstip auto)
-- increases the progress according to listened index. (not processed index)
-- current frame index points to listened frame index (not processed index)
-- when in discard partial frames or empty mode, the frame number doesnt increase by 1, it increases to that number (so its faster)
-- file write disabled by default
-- eiger 12 bit mode
-- start non blocking acquisition at modular level
-- connect master commands to api (allow set master for eiger)
---ignore-config command line
-- command line argument 'master' mainly for virtual servers (also master/top for real eiger), only one virtual server for eiger, use command lines for master/top
-- stop servers also check for errors at startup( in case it was running with an older version)
-- hostname cmd failed when connecting to servers in update mode (ctb, moench, jungfrau, eiger)
-- missingpackets signed (negative => extra packets)
-- framescaught and frameindex now returns a vector for each port
-- progress looks at activated or enabled ports, so progress does not stagnate
-- (eiger) disable datastreaming also for virtual servers only for 10g
-- missing packets also takes care of disabled ports
-- added geometry to metadata
-- 10g eiger nextframenumber get fixed.
-- stop, able to set nextframenumber to a consistent (max + 1) for all modules if different (eiger/ctb/jungfrau/moench)
-- ctb: can set names for all the dacs
-- fpga/kernel programming, checks if drive is a special file and not a normal file
-- gotthard 25 um image reconstructed in gui and virtual hdf5 (firmware updated for slave to reverse channels)
-- master binary file in json format now
-- fixed bug introduced in 6.0.0: hdf5 files created 1 file per frame after the initial file which had maxframesperfile
-- rx_roi
-- m3 polarity, interpolation (enables all counters when enabled), pump probe, analog pulsing, digital pulsing
-- updatedetectorserver - removes old server current binary pointing to for blackfin
-- removing copydetectorserver using tftp 
-- registerCallBackRawDataReady and registerCallBackRawDataModifyReady now gives a sls_receiver_header* instead of a char*, and uint32_t to size_t
-- registerCallBackStartAcquisition gave incorrect imagesize (+120 bytes). corrected.
-- registerCallBackStartAcquisition parameter is a const string reference
-- m3 (runnig config second time with tengiga 0, dr !=32, counters !=0x7) calculated incorrect image size expected
-- fixed row column indexing (mainly for multi module Jungfrau 2 interfaces )
-- eiger gui row indices not flipped anymore (fix in config)
-- m3 (settings dac check disabled temporarily?)
-- m3 virtual server sends the right pacets now
-- gap pixels in gui enabled by default
-- rxr src files and classes (detectordata, ZmqSocket, helpDacs) added to sls namespace, and macros (namely from logger (logINFO etc)), slsDetectorGui (make_unique in implemtnation requires sls nemspace (points to std otherwise) but not deectorImpl.cpp)
-- blackfin programing made seamless (nCE fixed which helps)
--save settings file for m3 and eiger
-- m3 threshold changes
-- g2 and m3 clkdiv 2 (system clock) change should affect time settings (g2: exptime, period, delayaftertrigger, burstperiod, m3: exptime, gatedelay, gateperiod, period, delayaftertrigger)
-- g2 system frequency is the same irrespective of timing source
-- (apparently) rxr doesnt get stuck anymore from 6.1.1
--rx_bunchsize, (default fifodepth for g2 changed to 50)
-- rxr mem size changed (fifo header size from 8 to 16) due to sls rxr header = 112.. 112+ 16=128 (reduces packet losss especially for g2)
--udp_srcip and udp_Srcip2: can set to auto (for virtual or 1g data networks)
-- set dataset name for all hdf5 files to "data" only
-- number of storage cells is not updated in teh receiver. done. and also allowing it to be modified in running status
 
 2. Resolved Issues
 ==================

cmake/SlsFindZeroMQ.cmake

@@ -1,38 +0,0 @@
-function(custom_find_zmq)
-    set(ZeroMQ_HINT "" CACHE STRING "Hint where ZeroMQ could be found")
-    #Adapted from: https://github.com/zeromq/cppzmq/
-    if (NOT TARGET libzmq)
-        if(ZeroMQ_HINT)
-            message(STATUS "Looking for ZeroMQ in: ${ZeroMQ_HINT}")
-            find_package(ZeroMQ 4 
-                NO_DEFAULT_PATH
-                HINTS ${ZeroMQ_HINT}
-            )
-        else()
-            find_package(ZeroMQ 4 QUIET)
-        endif()
-        
-    # libzmq autotools install: fallback to pkg-config
-    if(ZeroMQ_FOUND)
-        message(STATUS "Found libzmq using find_package")
-    else()
-        message(STATUS "CMake libzmq package not found, trying again with pkg-config (normal install of zeromq)")
-        list (APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_LIST_DIR}/cmake/libzmq-pkg-config)
-        find_package(ZeroMQ 4 REQUIRED)
-    endif()
-
-    # TODO "REQUIRED" above should already cause a fatal failure if not found, but this doesn't seem to work
-    if(NOT ZeroMQ_FOUND)
-        message(FATAL_ERROR "ZeroMQ was not found, neither as a CMake package nor via pkg-config")
-    endif()
-
-    if (ZeroMQ_FOUND AND NOT TARGET libzmq)
-        message(FATAL_ERROR "ZeroMQ version not supported!")
-    endif()
-    endif()
-
-    get_target_property(VAR libzmq IMPORTED_LOCATION)
-    message(STATUS "Using libzmq: ${VAR}")
-
-
-endfunction()

cmake/libzmq-pkg-config/FindZeroMQ.cmake

@@ -1,36 +0,0 @@
-#From: https://github.com/zeromq/cppzmq/
-set(PKG_CONFIG_USE_CMAKE_PREFIX_PATH ON)
-find_package(PkgConfig)
-pkg_check_modules(PC_LIBZMQ QUIET libzmq)
-
-set(ZeroMQ_VERSION ${PC_LIBZMQ_VERSION})
-
-find_path(ZeroMQ_INCLUDE_DIR zmq.h
-        PATHS ${ZeroMQ_DIR}/include
-        ${PC_LIBZMQ_INCLUDE_DIRS}
-)
-
-find_library(ZeroMQ_LIBRARY
-        NAMES zmq
-        PATHS ${ZeroMQ_DIR}/lib
-        ${PC_LIBZMQ_LIBDIR}
-        ${PC_LIBZMQ_LIBRARY_DIRS}
-)
-
-if(ZeroMQ_LIBRARY OR ZeroMQ_STATIC_LIBRARY)
-    set(ZeroMQ_FOUND ON)
-    message(STATUS "Found libzmq using PkgConfig")
-endif()
-
-set ( ZeroMQ_LIBRARIES ${ZeroMQ_LIBRARY} )
-set ( ZeroMQ_INCLUDE_DIRS ${ZeroMQ_INCLUDE_DIR} )
-
-if (NOT TARGET libzmq)
-    add_library(libzmq UNKNOWN IMPORTED)
-    set_target_properties(libzmq PROPERTIES
-            IMPORTED_LOCATION ${ZeroMQ_LIBRARIES}
-            INTERFACE_INCLUDE_DIRECTORIES ${ZeroMQ_INCLUDE_DIRS})
-endif()
-
-include ( FindPackageHandleStandardArgs )
-find_package_handle_standard_args ( ZeroMQ DEFAULT_MSG ZeroMQ_LIBRARIES ZeroMQ_INCLUDE_DIRS )

cmake/package_config.cmake

@@ -26,7 +26,7 @@ install(FILES
 )
 
 install(FILES
-  "${CMAKE_SOURCE_DIR}/cmake/libzmq-pkg-config/FindZeroMQ.cmake"
+  "${CMAKE_SOURCE_DIR}/libzmq-pkg-config/FindZeroMQ.cmake"
   COMPONENT devel
   DESTINATION ${CMAKE_INSTALL_DIR}/libzmq-pkg-config
 )

conda-recepie/copy_lib.sh

@@ -19,4 +19,4 @@ cp build/install/bin/slsMultiReceiver $PREFIX/bin/.
 
 
 cp build/install/include/sls/* $PREFIX/include/sls
-cp -rv build/install/share $PREFIX
+cp -r build/install/share/ $PREFIX/share

conda-recepie/copy_moench.sh

@@ -1,6 +1,6 @@
 # SPDX-License-Identifier: LGPL-3.0-or-other
 # Copyright (C) 2021 Contributors to the SLS Detector Package
-
 #Copy the Moench executables 
 mkdir -p $PREFIX/bin
-cp build/install/bin/moench* $PREFIX/bin/.
+cp build/install/bin/moench04ZmqProcess $PREFIX/bin/.
+cp build/install/bin/moenchZmqProcess $PREFIX/bin/.

ctbGui/CMakeLists.txt

@@ -34,7 +34,7 @@ add_executable(ctbGui
     ctbAdcs.cpp
     ctbPattern.cpp
     ctbAcquisition.cpp
-    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/tiffio/src/tiffIO.cpp
+    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/tiffIO.cpp
 )
 
 
@@ -43,7 +43,6 @@ target_include_directories(ctbGui PRIVATE
     ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/dataStructures
     ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/interpolations
     ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/
-    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/tiffio/include/
 )
 
 # Headders needed for ROOT dictionary generation

ctbGui/patternGenerator/generate.sh

@@ -21,10 +21,9 @@ fi
 
 if [ -f "$infile" ]
 then
-dir=$(dirname $infile)
+gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c ; 
-gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c -I$dir; 
 echo compiling
-echo gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c  -I$dir; 
+echo gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c ; 
 $exe ; 
 echo cleaning
 rm $exe

docs/src/gendoc.cpp

@@ -45,7 +45,6 @@ int main() {
 
     for (const auto &cmd : commands) {
         std::ostringstream os;
-        std::cout << cmd << '\n';
         proxy.Call(cmd, {}, -1, slsDetectorDefs::HELP_ACTION, os);
 
         auto tmp = os.str().erase(0, cmd.size());

docs/src/pygettingstarted.rst

@@ -136,7 +136,7 @@ can use dir()
     '__str__', '__subclasshook__', '_adc_register', '_frozen', 
     '_register', 'acquire', 'adcclk', 'adcphase', 'adcpipeline', 
     'adcreg', 'asamples', 'auto_comp_disable', 'clearAcquiringFlag', 
-    'clearBit', 'clearROI', 'client_version', 'config',  
+    'clearBit', 'clearROI', 'client_version', 'config', 'copyDetectorServer', 
     'counters', 'daclist', 'dacvalues', 'dbitclk', 'dbitphase' ...
 
 Since the list for Detector is rather long it's an good idea to filter it. 

docs/src/serverupgrade.rst

@@ -5,42 +5,17 @@ Detector Server Upgrade
 
 **Location:** slsDetectorPackage/serverBin/ folder for every release.
 
-.. note :: 
-
-    For Mythen3, Gotthard2 and Eiger, you need to add scripts to automatically start detector server upon power on. See :ref:`Automatic start<Automatic start servers>` for more details.
-
- .. note :: 
-
-    Eiger requires a manual reboot. Or killall the servers and restart the new linked one. If you are in the process of updating firmware, then don't reboot yet.
-
-
-From 6.1.1 and above (no tftp required)
----------------------------------------
-
-#. Program from console
-
-    .. code-block:: bash
-
-        # the following command copies new server, creates a soft link to xxxDetectorServerxxx
-        # [Jungfrau][CTB][Moench] also deletes the old server binary and edits initttab to respawn server on reboot
-        # Then, the detector controller will reboot (except Eiger)
-        sls_detector_put updatedetectorserver /complete-path-to-binary/xxxDetectorServerxxx
-
-#. Copy the detector server specific config files or any others required to the detector:
-
-   .. code-block:: bash
-
-        sls_detector_put execcommand "tftp pcxxx -r configxxx -g"
-
-5.0.0 - 6.1.1
---------------
 
 #. Install tftp and copy detector server binary to tftp folder
 #. Program from console
 
+    .. note :: 
+
+        These instructions are for upgrades from v5.0.0. For earlier versions, contact us.
+
     .. code-block:: bash
 
-        # the following command copies new server from pc tftp folder, creates a soft link to xxxDetectorServerxxx
+        # copies new server from pc tftp folder, creates a soft link to xxxDetectorServerxxx
         # [Jungfrau][CTB][Moench] also edits initttab to respawn server on reboot
         # Then, the detector controller will reboot (except Eiger)
         sls_detector_put copydetectorserver xxxDetectorServerxxx pcxxx
@@ -52,15 +27,18 @@ From 6.1.1 and above (no tftp required)
         sls_detector_put execcommand "tftp pcxxx -r configxxx -g"
 
 
-Troubleshooting with tftp
+.. note :: 
-^^^^^^^^^^^^^^^^^^^^^^^^^
+
+    For Mythen3, Gotthard2 and Eiger, you need to add scripts to automatically start detector server upon power on. See :ref:`Automatic start<Automatic start servers>` for more details.
+
+ .. note :: 
+
+    Eiger requires a manual reboot. Or killall the servers and restart the new linked one. If you are in the process of updating firmware, then don't reboot yet.
+
+
+Errors
+------
 
 #. tftp write error: There is no space left. Please delete some old binaries and try again.
 
-#. text file busy: You are trying to copy the same server.
+#. text file busy: You are trying to copy the same server.
-
-
-Older than 5.0.0
------------------
-
-Please contact us.

examples/moench03_T1.config

@@ -3,33 +3,33 @@
 ### edit with hostname or IP address of your detector 
 ############################################
 #hostname bchip181+
-hostname bchip119.psi.ch
+hostname bchip181+
 
 #############################################
 ### edit with hostname or 1Gbs IP address of your server
 ############################################
-rx_hostname mpc2011:1777
+rx_hostname mpc2011
 
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
-udp_dstip 10.1.2.102
+udp_dstip 10.1.1.102
 #############################################
 ### edit with any number in the subnet of your server (first 3 numbers as above)
 ############################################
-udp_srcip 10.1.2.19
+udp_srcip 10.1.1.19
-udp_dstport 32000
+udp_dstport 32411
 
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
-rx_zmqip 10.1.2.102
+rx_zmqip 10.1.1.102
-rx_zmqport 77000
+rx_zmqport 50003
 #############################################
 ### edit with 1 Gbs IP of PC where you will run the GUI
 ############################################
-zmqip  129.129.202.132
+zmqip 129.129.202.98
-zmqport 77001
+zmqport 50001
 
 
 
@@ -38,7 +38,7 @@ rx_zmqstream 1
 
 
 
-frames 1000
+frames 100000
 period 0.0006
 exptime 0.00035
 
@@ -62,9 +62,3 @@ highvoltage 90
 #adcreg 0x14 0x40
 
 
-
-frames 10
-period 0.1
-rx_jsonpara subframes 1
-rx_jsonpara frameMode raw
-rx_jsonpara detectorMode analog

integrationTests/test-eigerIntegration.cpp

@@ -6,8 +6,6 @@
 #include "tests/globals.h"
 #include <iostream>
 
-namespace sls {
-
 class MultiDetectorFixture {
   protected:
     DetectorImpl d;
@@ -138,7 +136,7 @@ TEST_CASE_METHOD(MultiDetectorFixture, "Get ID", "[.eigerintegration][cli]") {
     std::string hn = test::hostname;
     hn.erase(std::remove(begin(hn), end(hn), 'b'), end(hn));
     hn.erase(std::remove(begin(hn), end(hn), 'e'), end(hn));
-    auto hostnames = split(hn, '+');
+    auto hostnames = sls::split(hn, '+');
     CHECK(hostnames.size() == d.getNumberOfDetectors());
     for (int i = 0; i != d.getNumberOfDetectors(); ++i) {
         CHECK(d.getId(defs::DETECTOR_SERIAL_NUMBER, 0) ==
@@ -200,5 +198,3 @@ TEST_CASE_METHOD(MultiDetectorFixture, "rate correction",
     d.setRateCorrection(200);
     CHECK(d.getRateCorrection() == 200);
 }
-
-} // namespace sls

integrationTests/test-integrationDectector.cpp

@@ -24,8 +24,6 @@
 // extern std::string detector_type;
 // extern dt type;
 
-namespace sls {
-
 TEST_CASE("Single detector no receiver", "[.integration][.single]") {
     auto t = Module::getTypeFromDetector(test::hostname);
     CHECK(t == test::type);
@@ -285,14 +283,14 @@ TEST_CASE(
     CHECK(m.getRateCorrection() == ratecorr);
 
     // ratecorr fail with dr 4 or 8
-    CHECK_THROWS_AS(m.setDynamicRange(8), RuntimeError);
+    CHECK_THROWS_AS(m.setDynamicRange(8), sls::RuntimeError);
     CHECK(m.getRateCorrection() == 0);
     m.setDynamicRange(16);
     m.setDynamicRange(16);
     m.setRateCorrection(ratecorr);
     m.setDynamicRange(16);
     m.setRateCorrection(ratecorr);
-    CHECK_THROWS_AS(m.setDynamicRange(4), RuntimeError);
+    CHECK_THROWS_AS(m.setDynamicRange(4), sls::RuntimeError);
     CHECK(m.getRateCorrection() == 0);
 }
 
@@ -331,11 +329,11 @@ TEST_CASE("Chiptestboard Loading Patterns", "[.ctbintegration]") {
     m.setPatternWord(addr, word);
     CHECK(m.setPatternWord(addr, -1) == word);
     addr = MAX_ADDR;
-    CHECK_THROWS_AS(m.setPatternWord(addr, word), RuntimeError);
+    CHECK_THROWS_AS(m.setPatternWord(addr, word), sls::RuntimeError);
     CHECK_THROWS_WITH(m.setPatternWord(addr, word),
                       Catch::Matchers::Contains("be between 0 and"));
     addr = -1;
-    CHECK_THROWS_AS(m.setPatternWord(addr, word), RuntimeError);
+    CHECK_THROWS_AS(m.setPatternWord(addr, word), sls::RuntimeError);
     CHECK_THROWS_WITH(m.setPatternWord(addr, word),
                       Catch::Matchers::Contains("be between 0 and"));
 
@@ -410,7 +408,7 @@ TEST_CASE("Chiptestboard Dbit offset, list, sampling, advinvert",
     CHECK(m.getReceiverDbitList().size() == 10);
 
     list.push_back(64);
-    CHECK_THROWS_AS(m.setReceiverDbitList(list), RuntimeError);
+    CHECK_THROWS_AS(m.setReceiverDbitList(list), sls::RuntimeError);
     CHECK_THROWS_WITH(m.setReceiverDbitList(list),
                       Catch::Matchers::Contains("be between 0 and 63"));
 
@@ -478,7 +476,7 @@ TEST_CASE("Eiger or Jungfrau nextframenumber",
     CHECK(m.acquire() == slsDetectorDefs::OK);
     CHECK(m.getReceiverCurrentFrameIndex() == val);
 
-    CHECK_THROWS_AS(m.setNextFrameNumber(0), RuntimeError);
+    CHECK_THROWS_AS(m.setNextFrameNumber(0), sls::RuntimeError);
 
     if (m.getDetectorTypeAsString() == "Eiger") {
         val = 281474976710655;
@@ -513,10 +511,8 @@ TEST_CASE("Eiger partialread", "[.eigerintegration][partialread]") {
     m.setDynamicRange(8);
     m.setPartialReadout(256);
     CHECK(m.getPartialReadout() == 256);
-    CHECK_THROWS_AS(m.setPartialReadout(1), RuntimeError);
+    CHECK_THROWS_AS(m.setPartialReadout(1), sls::RuntimeError);
     CHECK(m.getPartialReadout() == 256);
-    CHECK_THROWS_AS(m.setPartialReadout(0), RuntimeError);
+    CHECK_THROWS_AS(m.setPartialReadout(0), sls::RuntimeError);
     m.setPartialReadout(256);
-}
+}
-
-} // namespace sls

integrationTests/test-integrationMulti.cpp

@@ -6,12 +6,10 @@
 #include "tests/globals.h"
 #include <iostream>
 
-namespace sls {
-
 using namespace Catch::literals;
 
 TEST_CASE("Initialize a multi detector", "[.integration][.multi]") {
-    auto hostnames = split(test::hostname, '+');
+    auto hostnames = sls::split(test::hostname, '+');
 
     DetectorImpl d(0, true, true);
     d.setHostname(test::hostname.c_str());
@@ -104,6 +102,3 @@ TEST_CASE("Set and read timers", "[.integration][.multi]") {
 
     d.freeSharedMemory();
 }
-
-} // namespace sls
-

libzmq-pkg-config/FindZeroMQ.cmake

@@ -0,0 +1,27 @@
+#From: https://github.com/zeromq/cppzmq/
+set(PKG_CONFIG_USE_CMAKE_PREFIX_PATH ON)
+find_package(PkgConfig)
+pkg_check_modules(PC_LIBZMQ QUIET libzmq)
+
+set(ZeroMQ_VERSION ${PC_LIBZMQ_VERSION})
+find_library(ZeroMQ_LIBRARY NAMES libzmq.so libzmq.dylib libzmq.dll
+             PATHS ${PC_LIBZMQ_LIBDIR} ${PC_LIBZMQ_LIBRARY_DIRS})
+find_library(ZeroMQ_STATIC_LIBRARY NAMES libzmq-static.a libzmq.a libzmq.dll.a
+             PATHS ${PC_LIBZMQ_LIBDIR} ${PC_LIBZMQ_LIBRARY_DIRS})
+
+if(ZeroMQ_LIBRARY OR ZeroMQ_STATIC_LIBRARY)
+    set(ZeroMQ_FOUND ON)
+endif()
+
+if (TARGET libzmq)
+    # avoid errors defining targets twice
+    return()
+endif()
+
+add_library(libzmq SHARED IMPORTED)
+set_property(TARGET libzmq PROPERTY INTERFACE_INCLUDE_DIRECTORIES ${PC_LIBZMQ_INCLUDE_DIRS})
+set_property(TARGET libzmq PROPERTY IMPORTED_LOCATION ${ZeroMQ_LIBRARY})
+
+add_library(libzmq-static STATIC IMPORTED ${PC_LIBZMQ_INCLUDE_DIRS})
+set_property(TARGET libzmq-static PROPERTY INTERFACE_INCLUDE_DIRECTORIES ${PC_LIBZMQ_INCLUDE_DIRS})
+set_property(TARGET libzmq-static PROPERTY IMPORTED_LOCATION ${ZeroMQ_STATIC_LIBRARY})

python/scripts/generate_enums.py

@@ -13,8 +13,8 @@ import subprocess
 
 from parse import remove_comments
 
-
+allow_bitwise_op = ["M3_GainCaps"]
-allow_bitwise_op = ["streamingInterface", "M3_GainCaps"]
+allow_bitwise_op = ["streamingInterface"]
 
 op_key = {"operator|": "|", 
           "operator&" : "&"}

python/scripts/generate_functions.py

@@ -6,57 +6,49 @@ sls::Detector class. The tool needs the libclang bindings
 to be installed. 
 
 When the Detector API is updated this file should be run
-manually.
+manually
 """
 from clang import cindex
 import subprocess
 import argparse
-import sys
-import time
-from pathlib import Path
-from parse import system_include_paths, clang_format_version
 
-REDC = '\033[91m'
-GREENC = '\033[92m'
-ENDC = '\033[0m'
-def red(msg):
-    return f'{REDC}{msg}{ENDC}'
-
-def green(msg):
-    return f'{GREENC}{msg}{ENDC}'
-
-def check_clang_format_version(required_version):
-    if (ver := clang_format_version()) != required_version:
-        msg = red(f'Clang format version {required_version} required, detected: {ver}. Bye!')
-        print(msg)
-        sys.exit(1)
-    else:
-        msg = green(f'Found clang-format version {ver}')
-        print(msg)
-
-def check_for_compile_commands_json(path):
-    # print(f"Looking for compile data base in: {path}")
-    compile_data_base_file = path/'compile_commands.json'
-    if not compile_data_base_file.exists():
-        msg = red(f"No compile_commands.json file found in {path}. Bye!")
-        print(msg)
-        sys.exit(1)
-    else:
-        msg = green(f'Found: {compile_data_base_file}')
-        print(msg)
 
+from parse import system_include_paths
 
 default_build_path = "/home/l_frojdh/sls/build/"
 fpath = "../../slsDetectorSoftware/src/Detector.cpp"
 
 
+parser = argparse.ArgumentParser()
+parser.add_argument(
+    "-p",
+    "--build_path",
+    help="Path to the build database",
+    type=str,
+    default=default_build_path,
+)
+cargs = parser.parse_args()
 
+db = cindex.CompilationDatabase.fromDirectory(cargs.build_path)
+index = cindex.Index.create()
+args = db.getCompileCommands(fpath)
+args = list(iter(args).__next__().arguments)[0:-1]
+args = args + "-x c++ --std=c++11".split()
+syspath = system_include_paths("clang++")
+incargs = ["-I" + inc for inc in syspath]
+args = args + incargs
+
+
+tu = index.parse(fpath, args=args)
 
 
 m = []
 ag = []
+
 lines = []
+
 ag2 = []
+
 cn = []
 
 def get_arguments(node):
@@ -74,7 +66,7 @@ def get_arguments_with_default(node):
     args = []
     for arg in node.get_arguments():
         tokens = [t.spelling for t in arg.get_tokens()]
-        # print(tokens)
+        print(tokens)
         if '=' in tokens:
             if arg.type.spelling == "sls::Positions": #TODO! automate
                 args.append("py::arg() = Positions{}")
@@ -119,67 +111,33 @@ def visit(node):
                     lines.append(
                         f'.def("{child.spelling}",{fs} &Detector::{child.spelling}{args})'
                     )
-                    if cargs.verbose:
-                        print(f'&Detector::{child.spelling}{args})')
                     cn.append(child)
     for child in node.get_children():
         visit(child)
 
+        # .def("setRxHostname",
+        #      (void (Detector::*)(const std::string &, Positions)) &
+        #          Detector::setRxHostname,
+        #      py::arg(), py::arg() = Positions{})
+        # .def("setRxHostname",
+        #      (void (Detector::*)(const std::vector<std::string> &)) &
+        #          Detector::setRxHostname,
+        #      py::arg())
 
-if __name__ == "__main__":
-    parser = argparse.ArgumentParser()
-    parser.add_argument(
-        "-p",
-        "--build_path",
-        help="Path to the build database",
-        type=Path,
-        default=default_build_path,
-    )
-    parser.add_argument(
-        "-v",
-        "--verbose",
-        help="more output",
-        action='store_true',
-    )
-    cargs = parser.parse_args()
-    
-    check_clang_format_version(12)
-    check_for_compile_commands_json(cargs.build_path)
 
-    print("Parsing functions in Detector.h - ", end = "", flush = True)
+visit(tu.cursor)
-    t0 = time.perf_counter()
-    #parse functions
-    db = cindex.CompilationDatabase.fromDirectory(cargs.build_path)
-    index = cindex.Index.create()
-    args = db.getCompileCommands(fpath)
-    args = list(iter(args).__next__().arguments)[0:-1]
-    args = args + "-x c++ --std=c++11".split()
-    syspath = system_include_paths("clang++")
-    incargs = ["-I" + inc for inc in syspath]
-    args = args + incargs
-    tu = index.parse(fpath, args=args)
-    visit(tu.cursor)
-    print(green('OK'))
-    print(f'Parsing took {time.perf_counter()-t0:.3f}s')
 
-    print("Read detector_in.cpp - ", end = "")
-    with open("../src/detector_in.cpp") as f:
-        data = f.read()
-    s = "".join(lines)
-    s += ";"
-    text = data.replace("[[FUNCTIONS]]", s)
-    warning = "/* WARINING This file is auto generated any edits might be overwritten without warning */\n\n"
-    print(green("OK"))
-    print("Writing to detector.cpp - ", end = "")
-    with open("../src/detector.cpp", "w") as f:
-        f.write(warning)
-        f.write(text)
-    print(green('OK'))
 
-    # run clang format on the output
+with open("../src/detector_in.cpp") as f:
-    print('Running clang format on generated source -', end = "")
+    data = f.read()
-    subprocess.run(["clang-format", "../src/detector.cpp", "-i"])
+s = "".join(lines)
-    print(green(" OK"))
+s += ";"
+text = data.replace("[[FUNCTIONS]]", s)
+warning = "/* WARINING This file is auto generated any edits might be overwritten without warning */\n\n"
+with open("../src/detector.cpp", "w") as f:
+    f.write(warning)
+    f.write(text)
+
+# run clang format on the output
+subprocess.run(["clang-format", "../src/detector.cpp", "-i"])
 
-    print("Changes since last commit:")
-    subprocess.run(['git',  'diff', '../src/detector.cpp'])

python/scripts/parse.py

@@ -5,12 +5,6 @@ import subprocess
 from subprocess import PIPE
 import os
 
-def clang_format_version():
-    p = subprocess.run(['clang-format', '--version'], capture_output = True)
-    ver = p.stdout.decode().split()[2]
-    major = int(ver.split('.')[0])
-    return major
-
 
 def remove_comments(text):
     def replacer(match):

python/slsdet/ctb.py

@@ -1,45 +1,43 @@
 # SPDX-License-Identifier: LGPL-3.0-or-other
 # Copyright (C) 2021 Contributors to the SLS Detector Package
-from .detector import Detector, freeze
+from .detector import Detector
 from .utils import element_if_equal
-from .dacs import DetectorDacs, NamedDacs
+from .dacs import DetectorDacs
 import _slsdet
 dacIndex = _slsdet.slsDetectorDefs.dacIndex
 from .detector_property import DetectorProperty
 
-# class CtbDacs(DetectorDacs):
+class CtbDacs(DetectorDacs):
-#     """
+    """
-#     Ctb dacs
+    Ctb dacs
-#     """
+    """
-#     _dacs = [('dac0',  dacIndex(0), 0, 4000,    1400),
+    _dacs = [('dac0',  dacIndex(0), 0, 4000,    1400),
-#              ('dac1',  dacIndex(1), 0, 4000,    1200),
+             ('dac1',  dacIndex(1), 0, 4000,    1200),
-#              ('dac2',  dacIndex(2), 0, 4000,    900),
+             ('dac2',  dacIndex(2), 0, 4000,    900),
-#              ('dac3',  dacIndex(3), 0, 4000,    1050),
+             ('dac3',  dacIndex(3), 0, 4000,    1050),
-#              ('dac4',  dacIndex(4), 0, 4000,     1400),
+             ('dac4',  dacIndex(4), 0, 4000,     1400),
-#              ('dac5',  dacIndex(5), 0, 4000,    655),
+             ('dac5',  dacIndex(5), 0, 4000,    655),
-#              ('dac6',  dacIndex(6), 0, 4000,    2000),
+             ('dac6',  dacIndex(6), 0, 4000,    2000),
-#              ('dac7',  dacIndex(7), 0, 4000,     1400),
+             ('dac7',  dacIndex(7), 0, 4000,     1400),
-#              ('dac8',  dacIndex(8), 0, 4000,    850),
+             ('dac8',  dacIndex(8), 0, 4000,    850),
-#              ('dac9',  dacIndex(9), 0, 4000,    2000),
+             ('dac9',  dacIndex(9), 0, 4000,    2000),
-#              ('dac10', dacIndex(10), 0, 4000,    2294),
+             ('dac10', dacIndex(10), 0, 4000,    2294),
-#              ('dac11', dacIndex(11), 0, 4000,    983),
+             ('dac11', dacIndex(11), 0, 4000,    983),
-#              ('dac12', dacIndex(12), 0, 4000,    1475),
+             ('dac12', dacIndex(12), 0, 4000,    1475),
-#              ('dac13', dacIndex(13), 0, 4000,    1200),
+             ('dac13', dacIndex(13), 0, 4000,    1200),
-#              ('dac14', dacIndex(14), 0, 4000,    1600),
+             ('dac14', dacIndex(14), 0, 4000,    1600),
-#              ('dac15', dacIndex(15), 0, 4000,    1455),
+             ('dac15', dacIndex(15), 0, 4000,    1455),
-#              ('dac16', dacIndex(16), 0, 4000,       0),
+             ('dac16', dacIndex(16), 0, 4000,       0),
-#              ('dac17', dacIndex(17), 0, 4000,    1000),
+             ('dac17', dacIndex(17), 0, 4000,    1000),
-#             ]
+            ]
-#     _dacnames = [_d[0] for _d in _dacs]
+    _dacnames = [_d[0] for _d in _dacs]
 
 from .utils import element
-@freeze
 class Ctb(Detector):
     def __init__(self, id = 0):
         super().__init__(id)
         self._frozen = False 
-        # self._dacs = CtbDacs(self)
+        self._dacs = CtbDacs(self)
-        self._dacs = NamedDacs(self)
     
     @property
     def dacs(self):

python/slsdet/dacs.py

@@ -36,79 +36,6 @@ class Dac(DetectorProperty):
         dacstr = ''.join([f'{item:5d}' for item in self.get()])
         return f'{self.__name__:15s}:{dacstr}'
 
-class NamedDacs:
-    """
-    New implementation of the detector dacs. Used at the momen for 
-    Ctb but should replace the old one for all detectors
-    """
-    _frozen = False
-    _direct_access = ['_detector', '_current', '_dacnames']
-    def __init__(self, detector):
-        self._detector = detector
-        self._current = 0
-
-        self._dacnames = [n.replace(" ", "") for n in detector.getDacNames()]
-        # # Populate the dacs
-        for i,name in enumerate(self._dacnames):
-            #name, enum, low, high, default, detector
-            setattr(self, name, Dac(name, dacIndex(i), 0, 4000, 1000, detector))
-
-        self._frozen = True
-
-    # def __getattr__(self, name):
-    #     return self.__getattribute__('_' + name)
-
-    def __setattr__(self, name, value):
-        if not self._frozen:
-            #durining init we need to be able to set up the class
-            super().__setattr__(name, value)
-        else:
-            #Later we restrict us to manipulate dacs and a few fields
-            if name in self._direct_access:
-                super().__setattr__(name, value)
-            elif name in self._dacnames:
-                return self.__getattribute__(name).__setitem__(slice(None, None, None), value)
-            else:
-                raise AttributeError(f'Dac not found: {name}')
-
-    def __next__(self):
-        if self._current >= len(self._dacnames):
-            self._current = 0
-            raise StopIteration
-        else:
-            self._current += 1
-            return self.__getattribute__(self._dacnames[self._current-1])
-            # return self.__getattr__(self._dacnames[self._current-1])
-
-    def __iter__(self):
-        return self
-
-    def __repr__(self):
-        r_str = ['========== DACS =========']
-        r_str += [repr(dac) for dac in self]
-        return '\n'.join(r_str)
-    def get_asarray(self):
-        """
-        Read the dacs into a numpy array with dimensions [ndacs, nmodules]
-        """
-        dac_array = np.zeros((len(self._dacnames), len(self._detector)))
-        for i, _d in enumerate(self):
-            dac_array[i,:] = _d[:]
-        return dac_array
-
-    def to_array(self):
-        return self.get_asarray()       
-
-    def set_from_array(self, dac_array):
-        """
-        Set the dacs from an numpy array with dac values. [ndacs, nmodules]
-        """
-        dac_array = dac_array.astype(np.int)
-        for i, _d in enumerate(self):
-            _d[:] = dac_array[i]
-
-    def from_array(self, dac_array):
-        self.set_from_array(dac_array)
 
 class DetectorDacs:
     _dacs = []
@@ -123,7 +50,7 @@ class DetectorDacs:
         # Index to support iteration
         self._current = 0
 
-        # Name the attributes? 
+        # Populate the dacs
         for _d in self._dacs:
             setattr(self, '_'+_d[0], Dac(*_d, detector))
 
@@ -132,10 +59,7 @@ class DetectorDacs:
     def __getattr__(self, name):
         return self.__getattribute__('_' + name)
 
-    @property
+
-    def dacnames(self):
-        return [_d[0] for _d in _dacs]
-        
     def __setattr__(self, name, value):
         if name in self._dacnames:
             return self.__getattribute__('_' + name).__setitem__(slice(None, None, None), value)

python/slsdet/detector.py

@@ -258,7 +258,7 @@ class Detector(CppDetectorApi):
     @element
     def rx_threads(self):
         """
-        Get thread ids from the receiver in order of [parent, tcp, listener 0, processor 0, streamer 0, listener 1, processor 1, streamer 1, arping]. 
+        Get thread ids from the receiver in order of [parent, tcp, listener 0, processor 0, streamer 0, listener 1, processor 1, streamer 1]. 
         
         Note
         -----
@@ -268,17 +268,6 @@ class Detector(CppDetectorApi):
         """
         return self.getRxThreadIds()
 
-    @property
-    @element
-    def rx_arping(self):
-        """Starts a thread in slsReceiver to arping the interface it is listening every minute. Useful in 10G mode. """
-        return self.getRxArping()
-
-    @rx_arping.setter
-    def rx_arping(self, value):
-        ut.set_using_dict(self.setRxArping, value)
-
-
     @property
     @element
     def dr(self):
@@ -287,7 +276,7 @@ class Detector(CppDetectorApi):
 
         Note
         -----
-        [Eiger] Options: 4, 8, 12, 16, 32. If set to 32, also sets clkdivider to 2 (quarter speed), else to 0 (full speed)\n
+        [Eiger] Options: 4, 8, 16, 32. If set to 32, also sets clkdivider to 2 (quarter speed), else to 0 (full speed)\n
         [Mythen3] Options: 8, 16, 32 \n
         [Jungfrau][Gotthard][Ctb][Moench][Mythen3][Gotthard2] 16
         """
@@ -599,13 +588,13 @@ class Detector(CppDetectorApi):
     @property
     @element
     def rx_framescaught(self):
-        """Number of frames caught by each port in receiver."""
+        """Number of frames caught by receiver."""
         return self.getFramesCaught()
 
     @property
     @element
     def nextframenumber(self):
-        """[Eiger][Jungfrau][Moench][CTB] Next frame number. Stopping acquisition might result in different frame numbers for different modules. """
+        """[Eiger][Jungfrau] Next frame number. Stopping acquisition might result in different frame numbers for different modules. """
         return self.getNextFrameNumber()
 
     @nextframenumber.setter
@@ -1442,21 +1431,20 @@ class Detector(CppDetectorApi):
     @property
     def trimbits(self):
         """
-        [Eiger][Mythen3] Loads/Saves custom trimbit file to detector. 
+        [Eiger][Mythen3] Loads custom trimbit file to detector. 
         
         Note
         -----
         If no extension specified, serial number of each module is attached.
 
-        :setter: Loads the trimbit file to detector
+        :getter: Not implemented
-        :getter: Saves the trimbits from the detector to file. Not implemented with 'trimbits'. Use saveTrimbits().
 
         Example
         -------
         >>> d.trimbits = '/path_to_file/noise'
         - 14:53:27.931 INFO: Settings file loaded: /path_to_file/noise.sn000
         """
-        raise NotImplementedError('trimbits is set only. Use saveTrimbits()')
+        return NotImplementedError("trimbits are set only")
 
     @trimbits.setter
     def trimbits(self, fname):
@@ -1475,19 +1463,6 @@ class Detector(CppDetectorApi):
     def trimval(self, value):
         ut.set_using_dict(self.setAllTrimbits, value)
 
-    @property
-    @element
-    def master(self):
-        """
-        [Eiger] Sets half module to master and others to slaves.\n
-        [Gotthard][Gotthard2][Mythen3][Eiger] Gets if the current module/ half module is master.
-        """
-        return self.getMaster()
-
-    @master.setter
-    def master(self, value):
-        ut.set_using_dict(self.setMaster, value)
-
     @property
     @element
     def lock(self):
@@ -1572,16 +1547,8 @@ class Detector(CppDetectorApi):
 
     @property
     def daclist(self):
-        """
+        """Gets the list of enums for every dac for this detector."""
-        List of enums for every dac for this detector.
+        return self.getDacList()
-        :setter: Only implemented for Chiptestboard
-        
-        """
-        return self.getDacNames()
-
-    @daclist.setter
-    def daclist(self, value):
-        self.setDacNames(value)
 
     @property
     def dacvalues(self):
@@ -1834,13 +1801,13 @@ class Detector(CppDetectorApi):
     @property
     @element
     def threshold(self):
-        """[Eiger][Mythen3] Threshold in eV
+        """[Eiger] Threshold in eV
         
         Note
         ----
         To change settings as well or set threshold without trimbits, use setThresholdEnergy.
 
-        :setter: It loads trim files from settingspath.\n [Mythen3] An energy of -1 will pick up values from detector.
+        :setter: It loads trim files from settingspath.
         """
         if self.type == detectorType.MYTHEN3:
             return self.getAllThresholdEnergy()
@@ -1927,13 +1894,13 @@ class Detector(CppDetectorApi):
     @property
     @element
     def rx_frameindex(self):
-        """Current frame index received for each port in receiver during acquisition."""
+        """Current frame index received in receiver during acquisition."""
         return self.getRxCurrentFrameIndex()
 
     @property
     @element
     def rx_missingpackets(self):
-        """Gets the number of missing packets for each port in receiver. Negative number denotes extra packets. """
+        """Gets the number of missing packets for each port in receiver."""
         return self.getNumMissingPackets()
 
     """
@@ -1946,7 +1913,7 @@ class Detector(CppDetectorApi):
     def datastream(self):
         """
         datastream [left|right] [0, 1]
-	    [Eiger] Enables or disables data streaming from left or/and right side of detector for 10GbE mode. 1 (enabled) by default.
+	    [Eiger] Enables or disables data streaming from left or/and right side of detector. 1 (enabled) by default.
         """
         result = {}
         for port in [defs.LEFT, defs.RIGHT]:
@@ -2148,21 +2115,6 @@ class Detector(CppDetectorApi):
         """
         return ut.reduce_time(self.getMeasuredSubFramePeriod())
 
-    @property
-    @element
-    def top(self):
-        """[Eiger] Sets half module to top (1), else bottom.
-        
-        Note
-        -----
-        Advanced Function!
-        """
-        return self.getTop()
-
-    @top.setter
-    def top(self, value):
-        ut.set_using_dict(self.setTop, value)
-
     """
     ------------------<<<Jungfrau specific>>>-------------------------
     """
@@ -2618,7 +2570,7 @@ class Detector(CppDetectorApi):
         -------
         >>> d.vetophoton = (2, 24, 2560, '/tmp/bla.txt')
         """
-        raise NotImplementedError('vetophoton is set only')
+        raise NotImplementedError('vetofile is set only')
 
     @vetophoton.setter
     def vetophoton(self, args):
@@ -3499,60 +3451,10 @@ class Detector(CppDetectorApi):
 
     def readout(self):
         """
-        [Mythen3] Starts detector readout. Status changes to TRANSMITTING and automatically returns to idle at the end of readout.
+        Mythen3] Starts detector readout. Status changes to TRANSMITTING and automatically returns to idle at the end of readout.
         """
         self.startDetectorReadout()
     
-    @property
-    @element
-    def polarity(self):
-        """[Mythen3] Set positive or negative polarity. Enum: polarity"""
-        return self.getPolarity()
-
-    @polarity.setter
-    def polarity(self, value):
-        ut.set_using_dict(self.setPolarity, value)
-
-    @property
-    @element
-    def interpolation(self):
-        """[Mythen3] Enable or disable interpolation.  interpolation mode enables all counters and disables vth3. Disabling sets back counter mask and vth3. """
-        return self.getInterpolation()
-
-    @interpolation.setter
-    def interpolation(self, value):
-        ut.set_using_dict(self.setInterpolation, value)
-
-    @property
-    @element
-    def pumpprobe(self):
-        """[Mythen3] Enable or disable pump probe mode. Pump probe mode only enables vth2. Disabling sets back to previous value """
-        return self.getPumpProbe()
-
-    @pumpprobe.setter
-    def pumpprobe(self, value):
-        ut.set_using_dict(self.setPumpProbe, value)
-
-    @property
-    @element
-    def apulse(self):
-        """[Mythen3] Enable or disable analog pulsing. """
-        return self.getAnalogPulsing()
-
-    @apulse.setter
-    def apulse(self, value):
-        ut.set_using_dict(self.setAnalogPulsing, value)
-
-    @property
-    @element
-    def dpulse(self):
-        """[Mythen3] Enable or disable digital pulsing. """
-        return self.getDigitalPulsing()
-
-    @dpulse.setter
-    def dpulse(self, value):
-        ut.set_using_dict(self.setDigitalPulsing, value)
-
 
     """
     ---------------------------<<<Debug>>>---------------------------

python/src/detector.cpp

@@ -1,8 +1,8 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 /* WARINING This file is auto generated any edits might be overwritten without
  * warning */
 
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include <pybind11/chrono.h>
 #include <pybind11/operators.h>
 #include <pybind11/pybind11.h>
@@ -144,10 +144,6 @@ void init_det(py::module &m) {
              (void (Detector::*)(const std::string &, sls::Positions)) &
                  Detector::loadTrimbits,
              py::arg(), py::arg() = Positions{})
-        .def("saveTrimbits",
-             (void (Detector::*)(const std::string &, sls::Positions)) &
-                 Detector::saveTrimbits,
-             py::arg(), py::arg() = Positions{})
         .def("getAllTrimbits",
              (Result<int>(Detector::*)(sls::Positions) const) &
                  Detector::getAllTrimbits,
@@ -177,12 +173,6 @@ void init_det(py::module &m) {
         .def("setFlipRows",
              (void (Detector::*)(bool, sls::Positions)) & Detector::setFlipRows,
              py::arg(), py::arg() = Positions{})
-        .def("getMaster",
-             (Result<bool>(Detector::*)(sls::Positions) const) &
-                 Detector::getMaster,
-             py::arg() = Positions{})
-        .def("setMaster", (void (Detector::*)(bool, int)) & Detector::setMaster,
-             py::arg(), py::arg())
         .def("isVirtualDetectorServer",
              (Result<bool>(Detector::*)(sls::Positions) const) &
                  Detector::isVirtualDetectorServer,
@@ -191,12 +181,12 @@ void init_det(py::module &m) {
              (void (Detector::*)(void (*)(double, int, void *), void *)) &
                  Detector::registerAcquisitionFinishedCallback,
              py::arg(), py::arg())
-        .def("registerDataCallback",
+        .def(
-             (void (Detector::*)(
+            "registerDataCallback",
-                 void (*)(sls::detectorData *, uint64_t, uint32_t, void *),
+            (void (Detector::*)(
-                 void *)) &
+                void (*)(detectorData *, uint64_t, uint32_t, void *), void *)) &
-                 Detector::registerDataCallback,
+                Detector::registerDataCallback,
-             py::arg(), py::arg())
+            py::arg(), py::arg())
         .def("getNumberOfFrames",
              (Result<int64_t>(Detector::*)(sls::Positions) const) &
                  Detector::getNumberOfFrames,
@@ -480,9 +470,7 @@ void init_det(py::module &m) {
              (void (Detector::*)()) & Detector::clearAcquiringFlag)
         .def("startReceiver", (void (Detector::*)()) & Detector::startReceiver)
         .def("stopReceiver", (void (Detector::*)()) & Detector::stopReceiver)
-        .def("startDetector",
+        .def("startDetector", (void (Detector::*)()) & Detector::startDetector)
-             (void (Detector::*)(sls::Positions)) & Detector::startDetector,
-             py::arg() = Positions{})
         .def("startDetectorReadout",
              (void (Detector::*)()) & Detector::startDetectorReadout)
         .def("stopDetector",
@@ -497,17 +485,14 @@ void init_det(py::module &m) {
                  Detector::getReceiverStatus,
              py::arg() = Positions{})
         .def("getFramesCaught",
-             (Result<std::vector<int64_t>>(Detector::*)(sls::Positions) const) &
+             (Result<int64_t>(Detector::*)(sls::Positions) const) &
                  Detector::getFramesCaught,
              py::arg() = Positions{})
-        .def("getNumMissingPackets",
+        .def(
-             (Result<std::vector<int64_t>>(Detector::*)(sls::Positions) const) &
+            "getNumMissingPackets",
-                 Detector::getNumMissingPackets,
+            (Result<std::vector<uint64_t>>(Detector::*)(sls::Positions) const) &
-             py::arg() = Positions{})
+                Detector::getNumMissingPackets,
-        .def("getRxCurrentFrameIndex",
+            py::arg() = Positions{})
-             (Result<std::vector<int64_t>>(Detector::*)(sls::Positions) const) &
-                 Detector::getRxCurrentFrameIndex,
-             py::arg() = Positions{})
         .def("getNextFrameNumber",
              (Result<uint64_t>(Detector::*)(sls::Positions) const) &
                  Detector::getNextFrameNumber,
@@ -780,25 +765,9 @@ void init_det(py::module &m) {
                  Detector::getRxLastClientIP,
              py::arg() = Positions{})
         .def("getRxThreadIds",
-             (Result<std::array<pid_t, 9>>(Detector::*)(sls::Positions) const) &
+             (Result<std::array<pid_t, 8>>(Detector::*)(sls::Positions) const) &
                  Detector::getRxThreadIds,
              py::arg() = Positions{})
-        .def("getRxArping",
-             (Result<bool>(Detector::*)(sls::Positions) const) &
-                 Detector::getRxArping,
-             py::arg() = Positions{})
-        .def("setRxArping",
-             (void (Detector::*)(bool, sls::Positions)) & Detector::setRxArping,
-             py::arg(), py::arg() = Positions{})
-        .def("getIndividualRxROIs",
-             (Result<defs::ROI>(Detector::*)(sls::Positions) const) &
-                 Detector::getIndividualRxROIs,
-             py::arg())
-        .def("getRxROI", (defs::ROI(Detector::*)() const) & Detector::getRxROI)
-        .def("setRxROI",
-             (void (Detector::*)(const defs::ROI)) & Detector::setRxROI,
-             py::arg())
-        .def("clearRxROI", (void (Detector::*)()) & Detector::clearRxROI)
         .def("getFileFormat",
              (Result<defs::fileFormat>(Detector::*)(sls::Positions) const) &
                  Detector::getFileFormat,
@@ -1028,13 +997,6 @@ void init_det(py::module &m) {
                                  sls::Positions)) &
                  Detector::setDataStream,
              py::arg(), py::arg(), py::arg() = Positions{})
-        .def("getTop",
-             (Result<bool>(Detector::*)(sls::Positions) const) &
-                 Detector::getTop,
-             py::arg() = Positions{})
-        .def("setTop",
-             (void (Detector::*)(bool, sls::Positions)) & Detector::setTop,
-             py::arg(), py::arg() = Positions{})
         .def("getChipVersion",
              (Result<double>(Detector::*)(sls::Positions) const) &
                  Detector::getChipVersion,
@@ -1293,6 +1255,10 @@ void init_det(py::module &m) {
              (Result<std::array<ns, 3>>(Detector::*)(sls::Positions) const) &
                  Detector::getGateDelayForAllGates,
              py::arg() = Positions{})
+        .def("getMaster",
+             (Result<bool>(Detector::*)(sls::Positions) const) &
+                 Detector::getMaster,
+             py::arg() = Positions{})
         .def("getChipStatusRegister",
              (Result<int>(Detector::*)(sls::Positions) const) &
                  Detector::getChipStatusRegister,
@@ -1303,46 +1269,6 @@ void init_det(py::module &m) {
         .def("getGainCaps",
              (Result<int>(Detector::*)(sls::Positions)) & Detector::getGainCaps,
              py::arg() = Positions{})
-        .def("getPolarity",
-             (Result<defs::polarity>(Detector::*)(sls::Positions) const) &
-                 Detector::getPolarity,
-             py::arg() = Positions{})
-        .def("setPolarity",
-             (void (Detector::*)(defs::polarity, sls::Positions)) &
-                 Detector::setPolarity,
-             py::arg(), py::arg() = Positions{})
-        .def("getInterpolation",
-             (Result<bool>(Detector::*)(sls::Positions) const) &
-                 Detector::getInterpolation,
-             py::arg() = Positions{})
-        .def("setInterpolation",
-             (void (Detector::*)(bool, sls::Positions)) &
-                 Detector::setInterpolation,
-             py::arg(), py::arg() = Positions{})
-        .def("getPumpProbe",
-             (Result<bool>(Detector::*)(sls::Positions) const) &
-                 Detector::getPumpProbe,
-             py::arg() = Positions{})
-        .def("setPumpProbe",
-             (void (Detector::*)(bool, sls::Positions)) &
-                 Detector::setPumpProbe,
-             py::arg(), py::arg() = Positions{})
-        .def("getAnalogPulsing",
-             (Result<bool>(Detector::*)(sls::Positions) const) &
-                 Detector::getAnalogPulsing,
-             py::arg() = Positions{})
-        .def("setAnalogPulsing",
-             (void (Detector::*)(bool, sls::Positions)) &
-                 Detector::setAnalogPulsing,
-             py::arg(), py::arg() = Positions{})
-        .def("getDigitalPulsing",
-             (Result<bool>(Detector::*)(sls::Positions) const) &
-                 Detector::getDigitalPulsing,
-             py::arg() = Positions{})
-        .def("setDigitalPulsing",
-             (void (Detector::*)(bool, sls::Positions)) &
-                 Detector::setDigitalPulsing,
-             py::arg(), py::arg() = Positions{})
         .def("getNumberOfAnalogSamples",
              (Result<int>(Detector::*)(sls::Positions) const) &
                  Detector::getNumberOfAnalogSamples,
@@ -1480,19 +1406,6 @@ void init_det(py::module &m) {
              (void (Detector::*)(bool, sls::Positions)) &
                  Detector::setLEDEnable,
              py::arg(), py::arg() = Positions{})
-        .def("setDacNames",
-             (void (Detector::*)(const std::vector<std::string>)) &
-                 Detector::setDacNames,
-             py::arg())
-        .def("getDacNames", (std::vector<std::string>(Detector::*)() const) &
-                                Detector::getDacNames)
-        .def("getDacIndex",
-             (defs::dacIndex(Detector::*)(const std::string &)) &
-                 Detector::getDacIndex,
-             py::arg())
-        .def("getDacName",
-             (std::string(Detector::*)(defs::dacIndex)) & Detector::getDacName,
-             py::arg())
         .def("setPattern",
              (void (Detector::*)(const std::string &, sls::Positions)) &
                  Detector::setPattern,
@@ -1597,13 +1510,17 @@ void init_det(py::module &m) {
                  Detector::setAdditionalJsonParameter,
              py::arg(), py::arg(), py::arg() = Positions{})
         .def("programFPGA",
-             (void (Detector::*)(const std::string &, const bool,
+             (void (Detector::*)(const std::string &, sls::Positions)) &
-                                 sls::Positions)) &
                  Detector::programFPGA,
-             py::arg(), py::arg(), py::arg() = Positions{})
+             py::arg(), py::arg() = Positions{})
         .def("resetFPGA",
              (void (Detector::*)(sls::Positions)) & Detector::resetFPGA,
              py::arg() = Positions{})
+        .def("copyDetectorServer",
+             (void (Detector::*)(const std::string &, const std::string &,
+                                 sls::Positions)) &
+                 Detector::copyDetectorServer,
+             py::arg(), py::arg(), py::arg() = Positions{})
         .def("updateDetectorServer",
              (void (Detector::*)(const std::string &, sls::Positions)) &
                  Detector::updateDetectorServer,
@@ -1615,6 +1532,11 @@ void init_det(py::module &m) {
         .def("rebootController",
              (void (Detector::*)(sls::Positions)) & Detector::rebootController,
              py::arg() = Positions{})
+        .def("updateFirmwareAndServer",
+             (void (Detector::*)(const std::string &, const std::string &,
+                                 const std::string &, sls::Positions)) &
+                 Detector::updateFirmwareAndServer,
+             py::arg(), py::arg(), py::arg(), py::arg() = Positions{})
         .def("updateFirmwareAndServer",
              (void (Detector::*)(const std::string &, const std::string &,
                                  sls::Positions)) &
@@ -1625,7 +1547,7 @@ void init_det(py::module &m) {
                  Detector::getUpdateMode,
              py::arg() = Positions{})
         .def("setUpdateMode",
-             (void (Detector::*)(const bool, sls::Positions)) &
+             (void (Detector::*)(bool, sls::Positions)) &
                  Detector::setUpdateMode,
              py::arg(), py::arg() = Positions{})
         .def("readRegister",
@@ -1717,5 +1639,9 @@ void init_det(py::module &m) {
                  Detector::getMeasurementTime,
              py::arg() = Positions{})
         .def("getUserDetails",
-             (std::string(Detector::*)() const) & Detector::getUserDetails);
+             (std::string(Detector::*)() const) & Detector::getUserDetails)
+        .def("getRxCurrentFrameIndex",
+             (Result<uint64_t>(Detector::*)(sls::Positions) const) &
+                 Detector::getRxCurrentFrameIndex,
+             py::arg() = Positions{});
 }

python/src/enums.cpp

@@ -273,8 +273,7 @@ void init_enums(py::module &m) {
                slsDetectorDefs::timingSourceType::TIMING_EXTERNAL)
         .export_values();
 
-    py::enum_<slsDetectorDefs::M3_GainCaps>(Defs, "M3_GainCaps",
+    py::enum_<slsDetectorDefs::M3_GainCaps>(Defs, "M3_GainCaps")
-                                            py::arithmetic())
         .value("M3_C10pre", slsDetectorDefs::M3_GainCaps::M3_C10pre)
         .value("M3_C15sh", slsDetectorDefs::M3_GainCaps::M3_C15sh)
         .value("M3_C30sh", slsDetectorDefs::M3_GainCaps::M3_C30sh)
@@ -315,9 +314,4 @@ void init_enums(py::module &m) {
         .value("FIX_G2", slsDetectorDefs::gainMode::FIX_G2)
         .value("FIX_G0", slsDetectorDefs::gainMode::FIX_G0)
         .export_values();
-
-    py::enum_<slsDetectorDefs::polarity>(Defs, "polarity")
-        .value("POSITIVE", slsDetectorDefs::polarity::POSITIVE)
-        .value("NEGATIVE", slsDetectorDefs::polarity::NEGATIVE)
-        .export_values();
 }

slsDetectorCalibration/analogDetector.h

@@ -10,7 +10,7 @@
 #include "pedestalSubtraction.h"
 #include "slsDetectorData.h"
 #include "slsInterpolation.h"
-#include "sls/tiffIO.h"
+#include "tiffIO.h"
 #include <pthread.h>
 
 #ifdef ROOTSPECTRUM

slsDetectorCalibration/dataStructures/moench03T1ReceiverDataNew.h

@@ -2,9 +2,49 @@
 // Copyright (C) 2021 Contributors to the SLS Detector Package
 #ifndef MOENCH03T1RECDATANEW_H
 #define MOENCH03T1RECDATANEW_H
-#include "sls/sls_detector_defs.h"
 #include "slsDetectorData.h"
 
+//#define VERSION_V2
+/**
+    @short  structure for a Detector Packet or Image Header
+    @li frameNumber is the frame number
+    @li expLength is the subframe number (32 bit eiger) or real time exposure
+   time in 100ns (others)
+    @li packetNumber is the packet number
+    @li bunchId is the bunch id from beamline
+    @li timestamp is the time stamp with 10 MHz clock
+    @li modId is the unique module id (unique even for left, right, top, bottom)
+    @li xCoord is the x coordinate in the complete detector system
+    @li yCoord is the y coordinate in the complete detector system
+    @li zCoord is the z coordinate in the complete detector system
+    @li debug is for debugging purposes
+    @li roundRNumber is the round robin set number
+    @li detType is the detector type see :: detectorType
+    @li version is the version number of this structure format
+*/
+typedef struct {
+    uint64_t frameNumber; /**< is the frame number */
+    uint32_t expLength; /**< is the subframe number (32 bit eiger) or real time
+                           exposure time in 100ns (others) */
+    uint32_t packetNumber; /**< is the packet number */
+    uint64_t bunchId;      /**< is the bunch id from beamline */
+    uint64_t timestamp;    /**< is the time stamp with 10 MHz clock */
+    uint16_t modId;  /**< is the unique module id (unique even for left, right,
+                        top, bottom) */
+    uint16_t xCoord; /**< is the x coordinate in the complete detector system */
+    uint16_t yCoord; /**< is the y coordinate in the complete detector system */
+    uint16_t zCoord; /**< is the z coordinate in the complete detector system */
+    uint32_t debug;  /**< is for debugging purposes */
+    uint16_t roundRNumber; /**< is the round robin set number */
+    uint8_t detType;       /**< is the detector type see :: detectorType */
+    uint8_t version; /**< is the version number of this structure format */
+#ifndef VERSION_V1
+    uint64_t
+        packetCaught[8]; /**< is the version number of this structure format */
+#endif
+
+} sls_detector_header;
+
 class moench03T1ReceiverDataNew : public slsDetectorData<uint16_t> {
 
   private:
@@ -16,9 +56,6 @@ class moench03T1ReceiverDataNew : public slsDetectorData<uint16_t> {
 
     double ghost[200][25];
 
-    // Single point of definition if we need to customize
-    using header = sls::defs::sls_receiver_header;
-
   public:
     /**
        Implements the slsReceiverData structure for the moench02 prototype read
@@ -27,7 +64,8 @@ class moench03T1ReceiverDataNew : public slsDetectorData<uint16_t> {
 
     */
     moench03T1ReceiverDataNew(int ns = 5000)
-        : slsDetectorData<uint16_t>(400, 400, ns * 2 * 32 + sizeof(header)),
+        : slsDetectorData<uint16_t>(400, 400,
+                                    ns * 2 * 32 + sizeof(sls_detector_header)),
           nSamples(ns) {
 
         int nadc = 32;
@@ -62,15 +100,15 @@ class moench03T1ReceiverDataNew : public slsDetectorData<uint16_t> {
                         } else {
                             row = 200 + i / sc_width;
                         }
-                        dataMap[row][col] = sizeof(header) +
+                        dataMap[row][col] = sizeof(sls_detector_header) +
                                             (nadc * i + iadc) * 2; //+16*(ip+1);
 #ifdef HIGHZ
                         dataMask[row][col] = 0x3fff; // invert data
 #endif
                         if (dataMap[row][col] < 0 ||
                             dataMap[row][col] >= nSamples * 2 * 32)
-                            std::cout << "Error: pointer " << dataMap[row][col]
+                            cout << "Error: pointer " << dataMap[row][col]
-                                      << " out of range " << std::endl;
+                                 << " out of range " << endl;
                     }
                 }
             }
@@ -82,13 +120,13 @@ class moench03T1ReceiverDataNew : public slsDetectorData<uint16_t> {
                 ghost[iy][ix] = 0.;
 
         int ipacket;
-        uint ibyte;
+        int ibyte;
         int ii = 0;
-        for (ibyte = 0; ibyte < sizeof(header) / 2; ibyte++) {
+        for (ibyte = 0; ibyte < sizeof(sls_detector_header) / 2; ibyte++) {
             xmap[ibyte] = -1;
             ymap[ibyte] = -1;
         }
-        int off = sizeof(header) / 2;
+        int off = sizeof(sls_detector_header) / 2;
         for (ipacket = 0; ipacket < npackets; ipacket++) {
             for (ibyte = 0; ibyte < 8192 / 2; ibyte++) {
                 i = ipacket * 8208 / 2 + ibyte;
@@ -123,7 +161,20 @@ class moench03T1ReceiverDataNew : public slsDetectorData<uint16_t> {
        required as double
 
     */
-    double getValue(char *data, int ix, int iy = 0) override {
+    virtual double getValue(char *data, int ix, int iy = 0) {
+        /* cout << " x "<< ix << " y"<< iy << " val " << getChannel(data, ix,
+         * iy)<< endl;*/
+        /* double val=0, vout=getChannel(data, ix, iy); */
+        /* int x1=ix%25; */
+        /* for (int ix=0; ix<16; ix++) { */
+        /*   for (int ii=0; ii<2; ii++) { */
+        /* 	val+=getChannel(data,x1+25*ix,iy); */
+        /* 	val+=getChannel(data,x1+25*ix,399-iy); */
+        /*   } */
+        /* } */
+        /* vout+=0.0008*val-6224; */
+        /* return vout; //(double)getChannel(data, ix, iy);
+         */
         uint16_t val = getChannel(data, ix, iy) & 0x3fff;
         return val;
     };
@@ -174,9 +225,17 @@ class moench03T1ReceiverDataNew : public slsDetectorData<uint16_t> {
 
  */
 
+    /* class jfrau_packet_header_t { */
+    /*  public: */
+    /* 	unsigned char reserved[4]; */
+    /* 	unsigned char packetNumber[1]; */
+    /* 	unsigned char frameNumber[3]; */
+    /* 	unsigned char bunchid[8]; */
+    /* }; */
+
     int getFrameNumber(char *buff) {
-        return ((header *)buff)->detHeader.frameNumber;
+        return ((sls_detector_header *)buff)->frameNumber;
-    }
+    }; //*((int*)(buff+5))&0xffffff;};
 
     /**
 
@@ -188,22 +247,68 @@ class moench03T1ReceiverDataNew : public slsDetectorData<uint16_t> {
 
     */
     int getPacketNumber(char *buff) {
-        return ((header *)buff)->detHeader.packetNumber;
+        return ((sls_detector_header *)buff)->packetNumber;
-    }
+    } //((*(((int*)(buff+4))))&0xff)+1;};
 
-    char *readNextFrame(std::ifstream &filebin) override {
+    /*    /\** */
+
+    /*      Loops over a memory slot until a complete frame is found (i.e. all
+     * packets 0 to nPackets, same frame number). purely virtual func */
+    /*      \param data pointer to the memory to be analyzed */
+    /*      \param ndata reference to the amount of data found for the frame, in
+     * case the frame is incomplete at the end of the memory slot */
+    /*      \param dsize size of the memory slot to be analyzed */
+    /*      \returns pointer to the beginning of the last good frame (might be
+     * incomplete if ndata smaller than dataSize), or NULL if no frame is found
+     */
+
+    /*   *\/ */
+    /*     virtual  char *findNextFrame(char *data, int &ndata, int
+     * dsize){ndata=dsize; setDataSize(dsize);  return data;}; */
+
+    /*    /\** */
+
+    /*      Loops over a file stream until a complete frame is found (i.e. all
+     * packets 0 to nPackets, same frame number). Can be overloaded for
+     * different kind of detectors!  */
+    /*      \param filebin input file stream (binary) */
+    /*      \returns pointer to the begin of the last good frame, NULL if no
+     * frame is found or last frame is incomplete */
+
+    /*   *\/ */
+    /*     virtual char *readNextFrame(ifstream &filebin){ */
+    /*       //	int afifo_length=0;   */
+    /*       uint16_t *afifo_cont;  */
+    /*       int ib=0; */
+    /*       if (filebin.is_open()) { */
+    /* 	afifo_cont=new uint16_t[dataSize/2]; */
+    /*  	while (filebin.read(((char*)afifo_cont)+ib,2)) { */
+    /* 	  ib+=2; */
+    /* 	  if (ib==dataSize) break; */
+    /* 	} */
+    /* 	if (ib>0) { */
+    /* 	  iframe++; */
+    /* 	  // cout << ib << "-" << endl; */
+    /* 	  return (char*)afifo_cont; */
+    /* 	} else { */
+    /* 	  delete [] afifo_cont; */
+    /* 	  return NULL; */
+    /* 	} */
+    /*       }      */
+    /*       return NULL; */
+    /*     }; */
+
+    virtual char *readNextFrame(ifstream &filebin) {
         int ff = -1, np = -1;
         return readNextFrame(filebin, ff, np);
-    }
+    };
 
-    // not present in base class
+    virtual char *readNextFrame(ifstream &filebin, int &ff) {
-    virtual char *readNextFrame(std::ifstream &filebin, int &ff) {
         int np = -1;
         return readNextFrame(filebin, ff, np);
     };
 
-    // not present in base class
+    virtual char *readNextFrame(ifstream &filebin, int &ff, int &np) {
-    virtual char *readNextFrame(std::ifstream &filebin, int &ff, int &np) {
         char *data = new char[dataSize];
         char *d = readNextFrame(filebin, ff, np, data);
         if (d == NULL) {
@@ -213,10 +318,18 @@ class moench03T1ReceiverDataNew : public slsDetectorData<uint16_t> {
         return data;
     }
 
-    // not present in base class
+    virtual char *readNextFrame(ifstream &filebin, int &ff, int &np,
-    virtual char *readNextFrame(std::ifstream &filebin, int &ff, int &np,
                                 char *data) {
+        char *retval = 0;
+        int nd;
+        int fnum = -1;
         np = 0;
+        int pn;
+
+        //  cout << dataSize << endl;
+        if (ff >= 0)
+            fnum = ff;
+
         if (filebin.is_open()) {
             if (filebin.read(data, dataSize)) {
                 ff = getFrameNumber(data);
@@ -224,8 +337,8 @@ class moench03T1ReceiverDataNew : public slsDetectorData<uint16_t> {
                 return data;
             }
         }
-        return nullptr;
+        return NULL;
-    }
+    };
 
     /**
 
@@ -239,7 +352,7 @@ class moench03T1ReceiverDataNew : public slsDetectorData<uint16_t> {
        found
 
     */
-    char *findNextFrame(char *data, int &ndata, int dsize) override {
+    virtual char *findNextFrame(char *data, int &ndata, int dsize) {
         if (dsize < dataSize)
             ndata = dsize;
         else

slsDetectorCalibration/dataStructures/moench03T1ZmqDataNew.h

@@ -29,7 +29,7 @@ class moench03T1ZmqDataNew : public slsDetectorData<uint16_t> {
     moench03T1ZmqDataNew(int ns = 5000, int oo = 2 * 2)
         : slsDetectorData<uint16_t>(400, 400, ns * 32 * 2 + oo), nSamples(ns),
           offset(oo), xtalk(0.00021) {
-        std::cout << "M0.3" << std::endl;
+        cout << "M0.3" << endl;
         int nadc = 32;
         int sc_width = 25;
         int sc_height = 200;
@@ -70,8 +70,8 @@ class moench03T1ZmqDataNew : public slsDetectorData<uint16_t> {
                     dataMap[row][col] =
                         (nadc * i + iadc) * 2 + offset; //+16*(ip+1);
                     if (dataMap[row][col] < 0 || dataMap[row][col] >= dataSize)
-                        std::cout << "Error: pointer " << dataMap[row][col]
+                        cout << "Error: pointer " << dataMap[row][col]
-                             << " out of range " << std::endl;
+                             << " out of range " << endl;
                 }
             }
         }
@@ -260,17 +260,17 @@ class moench03T1ZmqDataNew : public slsDetectorData<uint16_t> {
     /*       return NULL; */
     /*     }; */
 
-    virtual char *readNextFrame(std::ifstream &filebin) {
+    virtual char *readNextFrame(ifstream &filebin) {
         int ff = -1, np = -1;
         return readNextFrame(filebin, ff, np);
     };
 
-    virtual char *readNextFrame(std::ifstream &filebin, int &ff) {
+    virtual char *readNextFrame(ifstream &filebin, int &ff) {
         int np = -1;
         return readNextFrame(filebin, ff, np);
     };
 
-    virtual char *readNextFrame(std::ifstream &filebin, int &ff, int &np) {
+    virtual char *readNextFrame(ifstream &filebin, int &ff, int &np) {
         char *data = new char[32 * 2 * nSamples];
         char *d = readNextFrame(filebin, ff, np, data);
         if (d == NULL) {
@@ -280,7 +280,7 @@ class moench03T1ZmqDataNew : public slsDetectorData<uint16_t> {
         return data;
     }
 
-    virtual char *readNextFrame(std::ifstream &filebin, int &ff, int &np,
+    virtual char *readNextFrame(ifstream &filebin, int &ff, int &np,
                                 char *data) {
         // char *retval=0;
         //	  int  nd;

slsDetectorCalibration/dataStructures/moench04CtbZmq10GbData.h

@@ -3,9 +3,50 @@
 #ifndef MOENCH04ZMQ10GBDATA_H
 #define MOENCH04ZMQ10GBDATA_H
 #include "slsDetectorData.h"
-#include "sls/sls_detector_defs.h"
 
-using namespace std;
+#ifndef SLS_DETECTOR_HEADER
+#define SLS_DETECTOR_HEADER
+
+//#define VERSION_V2
+/**
+    @short  structure for a Detector Packet or Image Header
+    @li frameNumber is the frame number
+    @li expLength is the subframe number (32 bit eiger) or real time exposure
+   time in 100ns (others)
+    @li packetNumber is the packet number
+    @li bunchId is the bunch id from beamline
+    @li timestamp is the time stamp with 10 MHz clock
+    @li modId is the unique module id (unique even for left, right, top, bottom)
+    @li xCoord is the x coordinate in the complete detector system
+    @li yCoord is the y coordinate in the complete detector system
+    @li zCoord is the z coordinate in the complete detector system
+    @li debug is for debugging purposes
+    @li roundRNumber is the round robin set number
+    @li detType is the detector type see :: detectorType
+    @li version is the version number of this structure format
+*/
+typedef struct {
+    uint64_t frameNumber; /**< is the frame number */
+    uint32_t expLength; /**< is the subframe number (32 bit eiger) or real time
+                           exposure time in 100ns (others) */
+    uint32_t packetNumber; /**< is the packet number */
+    uint64_t bunchId;      /**< is the bunch id from beamline */
+    uint64_t timestamp;    /**< is the time stamp with 10 MHz clock */
+    uint16_t modId;  /**< is the unique module id (unique even for left, right,
+                        top, bottom) */
+    uint16_t xCoord; /**< is the x coordinate in the complete detector system */
+    uint16_t yCoord; /**< is the y coordinate in the complete detector system */
+    uint16_t zCoord; /**< is the z coordinate in the complete detector system */
+    uint32_t debug;  /**< is for debugging purposes */
+    uint16_t roundRNumber; /**< is the round robin set number */
+    uint8_t detType;       /**< is the detector type see :: detectorType */
+    uint8_t version; /**< is the version number of this structure format */
+    uint64_t
+        packetCaught[8]; /**< is the version number of this structure format */
+
+} sls_detector_header;
+#endif
+
 class moench04CtbZmq10GbData : public slsDetectorData<uint16_t> {
 
   private:
@@ -27,40 +68,67 @@ class moench04CtbZmq10GbData : public slsDetectorData<uint16_t> {
     // moench04CtbZmq10GbData(int nas=5000, int nds=0):
     // slsDetectorData<uint16_t>(400, 400, nas*2*32+nds*8), aSamples(nas),
     // dSamples(nds), nadc(32), sc_width(25), sc_height(200) {
- 
+#ifndef RAWDATA
+    moench04CtbZmq10GbData(int nas = 5000, int nds = 0)
+        : slsDetectorData<uint16_t>(400, 400,
+                                    (nas > 0) && (nds > 0)
+                                        ? max(nas, nds) * (32 * 2 + 8)
+                                        : nas * 32 * 2 + nds * 8),
+          nadc(32), sc_width(25), sc_height(200), aSamples(nas), dSamples(nds) {
+        int off = 0;
+#endif
+#ifdef RAWDATA
         moench04CtbZmq10GbData(int nas = 5000, int nds = 0)
             : slsDetectorData<uint16_t>(400, 400,
-#ifdef RAWDATA
+                                        sizeof(sls_detector_header) +
-                                        sizeof(slsDetectorDefs::sls_receiver_header) +
-#endif
                                             ((nas > 0) && (nds > 0)
                                                  ? max(nas, nds) * (32 * 2 + 8)
                                                  : nas * 32 * 2 + nds * 8)),
-      nadc(32), sc_width(25), sc_height(200), aSamples(nas), dSamples(nds) {
+              nadc(32), sc_width(25), sc_height(200), aSamples(nas),
-#ifdef RAWDATA
+              dSamples(nds) {
-      off=sizeof(slsDetectorDefs::sls_receiver_header);
+            int off = sizeof(sls_detector_header);
-#endif
+            cout << "hh" << dataSize << endl;
-#ifndef RAWDATA
+            cout << sizeof(sls_detector_header) +
-#ifndef CTB
+                        ((nas > 0) && (nds > 0) ? max(nas, nds) * (32 * 2 + 8)
-      off=sizeof(int);
+                                                : nas * 32 * 2 + nds * 8)
-#endif
+                 << endl;
-#ifdef CTB
-      off=0;
-#endif
 #endif
+            /* int ds; */
+            /* if (nas && nds) */
+            /*   if (nds>nas) */
+            /* 	ds=nds*(32*2+8); */
+            /*   else */
+            /* 	ds=nas*(32*2+8); */
+            /* else */
+            /*   ds=nas*32*2+nds*8; */
+
+            /* new slsDetectorData<uint16_t>(400, 400, ds); */
 
-      cout << "off is " << off << endl;
-	  
-	  if (off>0)
-	    cout << "M04 RAW DATA NEW " << endl;
-	  else
-	    cout << "M04 ZMQ DATA NEW " << endl;
-	    
             int adc_nr[32] = {9,  8,  11, 10, 13, 12, 15, 14, 1,  0,  3,
                               2,  5,  4,  7,  6,  23, 22, 21, 20, 19, 18,
                               17, 16, 31, 30, 29, 28, 27, 26, 25, 24};
 
-           
+            /*
+               iadc=ptr%32
+               isample=ptr/32
+
+               col=(adc_nr[iadc]%16)*25+isample%25
+               if (adc_nr[iadc]<16)
+               row=199-isample/25;
+               else
+               row=200+isample/25
+
+
+               adc0 col(9*25..10*25-1) row(199..0)
+               adc1 col(8*25..9*25-1)  row(199..0)
+               adc2 col(11*25..12*25-1) row(199..0)
+               adc3 col(10*25..11*25-1) row(199..0)
+               adc4 col(13*25..14*25-1) row(199..0)
+               adc5 col(12*25..13*25-1) row(199..0)
+               adc6 col(15*25..16*25-1) row(199..0)
+               adc7 col(14*25..15*25-1) row(199..0)
+               adc8 col(1*25..2*25-1) row(199..0)
+             */
 
             int row, col;
 
@@ -100,11 +168,39 @@ class moench04CtbZmq10GbData : public slsDetectorData<uint16_t> {
                 }
             }
 
+            /* for (ibyte=0; ibyte<sizeof(sls_detector_header)/2; ibyte++){ */
+            /*   xmap[ibyte]=-1; */
+            /*   ymap[ibyte]=-1; */
+            /* } */
+            /* int off=sizeof(sls_detector_header)/2; */
+
+            /*   for (ibyte=0;  ibyte<dataSize; ibyte++) { */
+
+            /* for (ipacket=0; ipacket<npackets; ipacket++) { */
+            /*   for (ibyte=0;  ibyte< 8192/2; ibyte++) { */
+            /* 	i=ipacket*8208/2+ibyte; */
+            /* 	  isample=ii/nadc; */
+            /* 	  if (isample<nSamples) { */
+            /* 	  iadc=ii%nadc; */
+            /* 	  adc4 = (int)iadc/4; */
+            /* 	  ix=isample%sc_width; */
+            /* 	  iy=isample/sc_width; */
+            /* 	  if (adc4%2==0) { */
+            /* 	    xmap[i+off]=adc_nr[iadc]+ix; */
+            /* 	    ymap[i+off]=ny/2-1-iy; */
+            /* 	  } else { */
+            /* 	    xmap[i+off]=adc_nr[iadc]+ix; */
+            /* 	    ymap[i+off]=ny/2+iy; */
+            /* 	  } */
+            /* 	  } */
+            /* 	ii++; */
+            /* 	//	} */
+            /*   } */
+            /* } */
 
             iframe = 0;
             //  cout << "data struct created" << endl;
-      }
+        }
-   
 
         int getGain(char *data, int x, int y) {
             // int aoff=aSamples*2*32;
@@ -157,12 +253,10 @@ class moench04CtbZmq10GbData : public slsDetectorData<uint16_t> {
         /* 	unsigned char bunchid[8]; */
         /* }; */
 
-        int getFrameNumber(char *buff) {
 #ifdef RAWDATA
-	  return ((slsDetectorDefs::sls_receiver_header *)buff)->detHeader.frameNumber;
+        int getFrameNumber(char *buff) {
-#endif
+            return ((sls_detector_header *)buff)->frameNumber;
-	    return (int)(*buff);
+        }; //*((int*)(buff+5))&0xffffff;};
-        }; 
 
         /**
 
@@ -174,15 +268,76 @@ class moench04CtbZmq10GbData : public slsDetectorData<uint16_t> {
 
         */
         int getPacketNumber(char *buff) {
-#ifdef RAWDATA
+            return ((sls_detector_header *)buff)->packetNumber;
-	  return ((slsDetectorDefs::sls_receiver_header *)buff)->detHeader.packetNumber;
+        } //((*(((int*)(buff+4))))&0xff)+1;};
 #endif
-	    return 0;
+#ifndef RAWDATA
-	    
+
-        }
+        int getFrameNumber(char *buff) {
+            return iframe;
+        }; //((sls_detector_header*)buff)->frameNumber;};//*((int*)(buff+5))&0xffffff;};
+#endif
+        /**
+
+           Returns the packet number for the given dataset. purely virtual func
+           \param buff pointer to the dataset
+           \returns packet number number
 
 
- 
+
+        */
+        // int getPacketNumber(char *buff){return
+        // ((sls_detector_header*)buff)->packetNumber;}//((*(((int*)(buff+4))))&0xff)+1;};
+
+        /*    /\** */
+
+        /*      Loops over a memory slot until a complete frame is found (i.e.
+         * all packets 0 to nPackets, same frame number). purely virtual func */
+        /*      \param data pointer to the memory to be analyzed */
+        /*      \param ndata reference to the amount of data found for the
+         * frame, in case the frame is incomplete at the end of the memory slot
+         */
+        /*      \param dsize size of the memory slot to be analyzed */
+        /*      \returns pointer to the beginning of the last good frame (might
+         * be incomplete if ndata smaller than dataSize), or NULL if no frame is
+         * found  */
+
+        /*   *\/ */
+        /*     virtual  char *findNextFrame(char *data, int &ndata, int
+         * dsize){ndata=dsize; setDataSize(dsize);  return data;}; */
+
+        /*    /\** */
+
+        /*      Loops over a file stream until a complete frame is found (i.e.
+         * all packets 0 to nPackets, same frame number). Can be overloaded for
+         * different kind of detectors!  */
+        /*      \param filebin input file stream (binary) */
+        /*      \returns pointer to the begin of the last good frame, NULL if no
+         * frame is found or last frame is incomplete */
+
+        /*   *\/ */
+        /*     virtual char *readNextFrame(ifstream &filebin){ */
+        /*       //	int afifo_length=0;   */
+        /*       uint16_t *afifo_cont;  */
+        /*       int ib=0; */
+        /*       if (filebin.is_open()) { */
+        /* 	afifo_cont=new uint16_t[dataSize/2]; */
+        /*  	while (filebin.read(((char*)afifo_cont)+ib,2)) { */
+        /* 	  ib+=2; */
+        /* 	  if (ib==dataSize) break; */
+        /* 	} */
+        /* 	if (ib>0) { */
+        /* 	  iframe++; */
+        /* 	  // cout << ib << "-" << endl; */
+        /* 	  return (char*)afifo_cont; */
+        /* 	} else { */
+        /* 	  delete [] afifo_cont; */
+        /* 	  return NULL; */
+        /* 	} */
+        /*       }      */
+        /*       return NULL; */
+        /*     }; */
+
         virtual char *readNextFrame(ifstream & filebin) {
             int ff = -1, np = -1;
             return readNextFrame(filebin, ff, np);
@@ -203,12 +358,11 @@ class moench04CtbZmq10GbData : public slsDetectorData<uint16_t> {
             return data;
         }
 
+#ifndef RAWDATA
 
         virtual char *readNextFrame(ifstream & filebin, int &ff, int &np,
                                     char *data) {
             // char *retval=0;
-#ifndef RAWDATA   
-
             // int  nd;
             // int fnum = -1;
             np = 0;
@@ -226,13 +380,19 @@ class moench04CtbZmq10GbData : public slsDetectorData<uint16_t> {
                     }
                 }
             return NULL;
+        };
+
 #endif
 
 #ifdef RAWDATA
-            //int nd;
+
+        virtual char *readNextFrame(ifstream & filebin, int &ff, int &np,
+                                    char *data) {
+            char *retval = 0;
+            int nd;
             int fnum = -1;
             np = 0;
-            //int pn;
+            int pn;
 
             //  cout << dataSize << endl;
             if (ff >= 0)
@@ -246,9 +406,9 @@ class moench04CtbZmq10GbData : public slsDetectorData<uint16_t> {
                 }
             }
             return NULL;
+        };
 
 #endif
-        };
 
         /**
 
@@ -273,4 +433,3 @@ class moench04CtbZmq10GbData : public slsDetectorData<uint16_t> {
     };
 
 #endif
-

slsDetectorCalibration/dataStructures/moenchData.h

@@ -1,216 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#ifndef MOENCHDATA_H
-#define MOENCHDATA_H
-#include "slsDetectorData.h"
-#include "sls/sls_detector_defs.h"
-
-using namespace std;
-class moenchData : public slsDetectorData<uint16_t> {
-
-  private:
-    int iframe;
-    int nadc;
-    int sc_width;
-    int sc_height;
-    const int aSamples;
-    const int dSamples;
-    int off;
-    int *adc_nr;
-    int *ibit;
-
-  public:
-    /**
-       Implements the slsReceiverData structure for the moench02 prototype read
-       out by a module i.e. using the slsReceiver (160x160 pixels, 40 packets
-       1286 large etc.) \param c crosstalk parameter for the output buffer
-
-    */
-  
- 
- moenchData(int off, int nadc_i, int *adc_nr_in, int *ibit_in, int nas = 5000, int nds = 0, int nx_i=400, int ny_i=400)
-   : nadc(nadc_i), slsDetectorData<uint16_t>(nx_i, ny_i,off+((nas > 0) && (nds > 0)
-                                                 ? max(nas, nds) * (nadc_i * 2 + 8)
-                                                 : nas * nadc_i * 2 + nds * 8)),
-       sc_width(25), sc_height(200), aSamples(nas), dSamples(nds) {
-      
-      
-      adc_nr=new int[nadc];
-      if (ibit_in)
-	ibit=new int[nadc];
-      else
-	ibit=NULL;
-      for (iadc=0; iadc<nadc; iadc++) {
-	adc_nr[iadc]=adc_nr_in[iadc];
-	if (ibit)
-	  ibit[iadc]=ibit_in[iadc];
-      }
-
-	  
-
-            int row, col;
-            int iadc;
-            int i;
-
-            for (int is = 0; is < aSamples; is++) {
-
-                for (iadc = 0; iadc < nadc; iadc++) {
-                    i = is;
-                    //	  adc4=(int)iadc/4;
-                    if (i < sc_width * sc_height) {
-                        //  for (int i=0; i<sc_width*sc_height; i++) {
-                        col = (adc_nr[iadc] % 16) * sc_width + (i % sc_width);
-                        // if (adc4%2==0) {
-                        if (iadc < 16) {
-                            row = 199 - i / sc_width;
-                        } else {
-                            row = 200 + i / sc_width;
-                        }
-                        if (nds > 0)
-                            dataMap[row][col] =
-                                ((nadc + 4) * i + iadc) * 2 + off; //+16*(ip+1);
-                        else
-                            dataMap[row][col] =
-                                (nadc * i + iadc) * 2 + off; //+16*(ip+1);
-                        if (dataMap[row][col] < 0 ||
-                            dataMap[row][col] >= aSamples * 2 * 32 + off)
-                            cout << "Error: pointer " << dataMap[row][col]
-                                 << " out of range " << endl;
-                    }
-                }
-            }
-            iframe = 0;
-      }
-   
-
-        virtual int getGain(char *data, int x, int y) {
-            // int aoff=aSamples*2*32;
-
-	  if (ibit) {
-            int irow;
-            int isc = x / sc_width;
-            int icol = x % sc_width;
-            if (y < 200)
-                irow = sc_height - 1 - y;
-            else {
-                irow = y - sc_height;
-                isc++;
-            }
-            int isample = irow * sc_width + icol;
-
-            uint64_t sample;
-            char *ptr;
-            if (isc < 0 || isc >= 32)
-                return 0;
-            if (ibit[isc] < 0 || ibit[isc] >= 64)
-                return 0;
-            if (dSamples > isample) {
-                ptr = data + 32 * (isample + 1) + 8 * isample;
-                sample = *((uint64_t *)ptr);
-                if (sample & (1 << ibit[isc]))
-		  return 1;
-            } 
-	  }
-	  return 0;
-        }
-
-        /**
-
-        Returns the frame number for the given dataset. Purely virtual func.
-        \param buff pointer to the dataset
-        \returns frame number
-
-     */
-
-     
-
-        int getFrameNumber(char *buff) {
-	  return (int* buff)[0];
-        }; 
-
-        /**
-
-           Returns the packet number for the given dataset. purely virtual func
-           \param buff pointer to the dataset
-           \returns packet number number
-
-
-
-        */
-        int getPacketNumber(char *buff) {
-	    return 0;
-	    
-        }
-
-
- 
-        virtual char *readNextFrame(ifstream & filebin) {
-            int ff = -1, np = -1;
-            return readNextFrame(filebin, ff, np);
-        };
-
-        virtual char *readNextFrame(ifstream & filebin, int &ff) {
-            int np = -1;
-            return readNextFrame(filebin, ff, np);
-        };
-
-        virtual char *readNextFrame(ifstream & filebin, int &ff, int &np) {
-            char *data = new char[dataSize];
-            char *d = readNextFrame(filebin, ff, np, data);
-            if (d == NULL) {
-                delete[] data;
-                data = NULL;
-            }
-            return data;
-        }
-
-
-        virtual char *readNextFrame(ifstream & filebin, int &ff, int &np,
-                                    char *data) {
-          
-            char *retval = 0;
-            int nd;
-            int fnum = -1;
-            np = 0;
-            int pn;
-
-            //  cout << dataSize << endl;
-            //if (ff >= 0)
-            //    fnum = ff;
-
-            if (filebin.is_open()) {
-                if (filebin.read(data, dataSize)) {
-                    ff = getFrameNumber(data);
-                    np = getPacketNumber(data);
-                    return data;
-                }
-            }
-            return NULL;
-        };
-
-        /**
-
-           Loops over a memory slot until a complete frame is found (i.e. all
-           packets 0 to nPackets, same frame number). purely virtual func \param
-           data pointer to the memory to be analyzed \param ndata reference to
-           the amount of data found for the frame, in case the frame is
-           incomplete at the end of the memory slot \param dsize size of the
-           memory slot to be analyzed \returns pointer to the beginning of the
-           last good frame (might be incomplete if ndata smaller than dataSize),
-           or NULL if no frame is found
-
-        */
-        virtual char *findNextFrame(char *data, int &ndata, int dsize) {
-            if (dsize < dataSize)
-                ndata = dsize;
-            else
-                ndata = dataSize;
-            return data;
-        }
-
-
-
-    };
-
-#endif
-

slsDetectorCalibration/dataStructures/slsDetectorData.h

@@ -4,8 +4,11 @@
 #define SLSDETECTORDATA_H
 
 #include <fstream>
+#include <inttypes.h>
 #include <iostream>
 
+using namespace std;
+
 template <class dataType> class slsDetectorData {
 
   protected:
@@ -26,11 +29,13 @@ template <class dataType> class slsDetectorData {
 
   public:
     /**
-    General slsDetectors data structure. Works for data acquired using the
+
+
+       General slsDetectors data structure. Works for data acquired using the
     slsDetectorReceiver. Can be generalized to other detectors (many virtual
     funcs).
 
-    Constructor (no error checking if datasize and offsets are compatible!)
+       Constructor (no error checking if datasize and offsets are compatible!)
     \param npx number of pixels in the x direction
     \param npy number of pixels in the y direction (1 for strips)
     \param dsize size of the data
@@ -40,26 +45,309 @@ template <class dataType> class slsDetectorData {
     is inversion is required) \param dROI Array of size nx*ny. The elements are
     1s if the channel is good or in the ROI, 0 is bad or out of the ROI. NULL
     (default) means all 1s.
+
     */
     slsDetectorData(int npx, int npy, int dsize, int **dMap = NULL,
-                    dataType **dMask = NULL, int **dROI = NULL);
+                    dataType **dMask = NULL, int **dROI = NULL)
+        : nx(npx), ny(npy), dataSize(dsize), orderedData(NULL), isOrdered(0) {
 
-    virtual ~slsDetectorData();
+        int el = dsize / sizeof(dataType);
+        xmap = new int[el];
+        ymap = new int[el];
+
+        orderedData = new dataType *[ny];
+        dataMap = new int *[ny];
+        dataMask = new dataType *[ny];
+        dataROIMask = new int *[ny];
+        for (int i = 0; i < ny; i++) {
+            dataMap[i] = new int[nx];
+            orderedData[i] = new dataType[nx];
+            dataMask[i] = new dataType[nx];
+            dataROIMask[i] = new int[nx];
+            for (int j = 0; j < nx; j++)
+                dataROIMask[i][j] = 1;
+        }
+
+        for (int ip = 0; ip < el; ip++) {
+            xmap[ip] = -1;
+            ymap[ip] = -1;
+        }
+
+        setDataMap(dMap);
+        setDataMask(dMask);
+        setDataROIMask(dROI);
+    }
+
+    virtual ~slsDetectorData() {
+        for (int i = 0; i < ny; i++) {
+            delete[] dataMap[i];
+            delete[] dataMask[i];
+            delete[] dataROIMask[i];
+            delete[] orderedData[i];
+        }
+        delete[] dataMap;
+        delete[] dataMask;
+        delete[] dataROIMask;
+        delete[] orderedData;
+        delete[] xmap;
+        delete[] ymap;
+    };
 
-    // Virtual functions
     virtual int getPointer(int ix, int iy) { return dataMap[iy][ix]; };
-    virtual void getPixel(int ip, int &x, int &y);
+    /**
-    virtual dataType **getData(char *ptr, int dsize = -1);
+       defines the data map (as offset) - no error checking if datasize and
-    virtual double **getImage(char *ptr, int dsize = -1);
+       offsets are compatible! \param dMap array of size nx*ny storing the
-    virtual dataType getChannel(char *data, int ix, int iy = 0);
+       pointers to the data in the dataset (as offset). If NULL (default),the
+       data are arranged as if read out row by row
+       (dataMap[iy][ix]=(iy*nx+ix)*sizeof(dataType);)
+    */
+    void setDataMap(int **dMap = NULL) {
+
+        int ip = 0;
+        int ix, iy;
+        if (dMap == NULL) {
+            for (iy = 0; iy < ny; iy++) {
+                for (ix = 0; ix < nx; ix++) {
+                    dataMap[iy][ix] = (iy * nx + ix) * sizeof(dataType);
+                }
+            }
+        } else {
+            // cout << "set dmap "<< dataMap << " " << dMap << endl;
+            for (iy = 0; iy < ny; iy++) {
+                // cout << iy << endl;
+                for (ix = 0; ix < nx; ix++) {
+                    dataMap[iy][ix] = dMap[iy][ix];
+                    // cout << ix << " " << iy << endl;
+                    /*ip=dataMap[ix][iy]/sizeof(dataType);
+                      xmap[ip]=ix;
+                      ymap[ip]=iy;Annaa*/
+                }
+            }
+        }
+        for (iy = 0; iy < ny; iy++) {
+            for (ix = 0; ix < nx; ix++) {
+                ip = dataMap[iy][ix] / sizeof(dataType);
+                xmap[ip] = ix;
+                ymap[ip] = iy;
+            }
+        }
+
+        // cout << "nx:" <<nx << " ny:" << ny << endl;
+    };
+
+    /**
+       defines the data mask i.e. the polarity of the data
+       \param dMask Array of size nx*ny storing the polarity of the data in the
+       dataset (should be 0 if no inversion is required, 0xffffffff is inversion
+       is required)
+
+    */
+    void setDataMask(dataType **dMask = NULL) {
+
+        if (dMask != NULL) {
+
+            for (int iy = 0; iy < ny; iy++)
+                for (int ix = 0; ix < nx; ix++)
+                    dataMask[iy][ix] = dMask[iy][ix];
+        } else {
+            for (int iy = 0; iy < ny; iy++)
+                for (int ix = 0; ix < nx; ix++)
+                    dataMask[iy][ix] = 0;
+        }
+    };
+    /**
+       defines the region of interest and/or the bad channels mask
+       \param dROI Array of size nx*ny. The lements are 1s if the channel is
+       good or in the ROI, 0 is bad or out of the ROI. NULL (default) means all
+       1s.
+
+    */
+    void setDataROIMask(int **dROI = NULL) {
+
+        if (dROI != NULL) {
+
+            for (int iy = 0; iy < ny; iy++)
+                for (int ix = 0; ix < nx; ix++)
+                    dataROIMask[iy][ix] = dROI[iy][ix];
+        } else {
+
+            for (int iy = 0; iy < ny; iy++)
+                for (int ix = 0; ix < nx; ix++)
+                    dataROIMask[iy][ix] = 1;
+        }
+    };
+
+    /**
+       Define bad channel or roi mask for a single channel
+       \param ix channel x coordinate
+       \param iy channel y coordinate (1 for strips)
+       \param i 1 if pixel is good (or in the roi), 0 if bad
+       \returns 1 if pixel is good, 0 if it's bad, -1 if pixel is out of range
+    */
+    int setGood(int ix, int iy, int i = 1) {
+        if (ix >= 0 && ix < nx && iy >= 0 && iy < ny)
+            dataROIMask[iy][ix] = i;
+        return isGood(ix, iy);
+    };
+    /**
+       Define bad channel or roi mask for a single channel
+       \param ix channel x coordinate
+       \param iy channel y coordinate (1 for strips)
+       \returns 1 if pixel is good, 0 if it's bad, -1 if pixel is out of range
+    */
+    int isGood(int ix, int iy) {
+        if (ix >= 0 && ix < nx && iy >= 0 && iy < ny)
+            return dataROIMask[iy][ix];
+        else
+            return -1;
+    };
+
+    /**
+       Returns detector size in x,y
+       \param npx reference to number of channels in x
+       \param npy reference to number of channels in y (will be 1 for strips)
+       \returns total number of channels
+    */
+    int getDetectorSize(int &npx, int &npy) {
+        npx = nx;
+        npy = ny;
+        return nx * ny;
+    };
+
+    /** Returns the size of the data frame */
+    int getDataSize() { return dataSize; };
+
+    /** changes the size of the data frame */
+    int setDataSize(int d) {
+        dataSize = d;
+        return dataSize;
+    };
+
+    virtual void getPixel(int ip, int &x, int &y) {
+        x = xmap[ip];
+        y = ymap[ip];
+    };
+
+    virtual dataType **getData(char *ptr, int dsize = -1) {
+        int el = dsize / sizeof(dataType);
+        // dataType **data;
+        int ix, iy;
+        // data=new dataType*[ny];
+        // for(int i = 0; i < ny; i++) {
+        //   data[i]=new dataType[nx];
+        // }
+        isOrdered = 0;
+        if (dsize <= 0 || dsize > dataSize)
+            dsize = dataSize;
+
+        for (int ip = 0; ip < (el); ip++) {
+            getPixel(ip, ix, iy);
+            if (ix >= 0 && ix < nx && iy >= 0 && iy < ny) {
+                // data[iy][ix]=getChannel(ptr,ix,iy);
+                orderedData[iy][ix] = *(ptr + ip); // getChannel(ptr,ix,iy);
+            }
+        }
+        isOrdered = 1;
+        return orderedData;
+    }
+
+    void newFrame() { isOrdered = 0; };
+
+    virtual double **getImage(char *ptr, int dsize = -1) {
+
+        double **data;
+        int ix, iy;
+        data = new double *[ny];
+        for (int i = 0; i < ny; i++) {
+            data[i] = new double[nx];
+        }
+        int el = dsize / sizeof(dataType);
+        if (dsize <= 0 || dsize > dataSize)
+            dsize = dataSize;
+        for (int ip = 0; ip < el; ip++) {
+            getPixel(ip, ix, iy);
+            if (ix >= 0 && ix < nx && iy >= 0 && iy < ny) {
+                data[iy][ix] = getValue(ptr, ix, iy);
+            }
+        }
+        return data;
+    };
+
+    /**
+       Returns the value of the selected channel for the given dataset. Virtual
+       function, can be overloaded. \param data pointer to the dataset
+       (including headers etc) \param ix pixel number in the x direction \param
+       iy pixel number in the y direction \returns data for the selected
+       channel, with inversion if required
+
+    */
+    virtual dataType getChannel(char *data, int ix, int iy = 0) {
+        dataType m = 0, d = 0;
+        if (ix >= 0 && ix < nx && iy >= 0 && iy < ny && dataMap[iy][ix] >= 0 &&
+            dataMap[iy][ix] < dataSize) {
+            // cout << ix << " " << iy << " " ;
+            // cout << dataMap[ix][iy] << " " << (void*)data << " " <<
+            // dataSize<< endl;
+            m = dataMask[iy][ix];
+            if (isOrdered == 0)
+                d = *((dataType *)(data + getPointer(ix, iy)));
+            else
+                d = orderedData[iy][ix];
+        }
+        return d ^ m;
+    };
+
     virtual int getGain(char *data, int ix, int iy = 0) { return 0; };
+
+    /**
+
+       Returns the value of the selected channel for the given dataset. Virtual
+       function, can be overloaded. \param data pointer to the dataset
+       (including headers etc) \param ix pixel number in the x direction \param
+       iy pixel number in the y direction \returns data for the selected
+       channel, with inversion if required or -1 if its a missing packet
+
+    */
+
+    virtual int getChannelwithMissingPackets(char *data, int ix, int iy) {
+        return 0;
+    };
+
+    /**
+       Returns the value of the selected channel for the given dataset as
+       double. \param data pointer to the dataset (including headers etc) \param
+       ix pixel number in the x direction \param iy pixel number in the y
+       direction \returns data for the selected channel, with inversion if
+       required as double
+
+    */
     virtual double getValue(char *data, int ix, int iy = 0) {
+        /* cout << " x "<< ix << " y"<< iy << " val " << getChannel(data, ix,
+         * iy)<< endl;*/
         return (double)getChannel(data, ix, iy);
     };
 
-    virtual int getFrameNumber(char *buff) = 0;
-    
     /**
+       Returns the frame number for the given dataset. Purely virtual func.
+       \param buff pointer to the dataset
+       \returns frame number
+
+    */
+    virtual int getFrameNumber(char *buff) = 0;
+
+    /**
+
+       Returns the packet number for the given dataset. purely virtual func
+       \param buff pointer to the dataset
+       \returns packet number number
+
+
+       virtual int getPacketNumber(char *buff)=0;
+
+    */
+
+    /**
+
        Loops over a memory slot until a complete frame is found (i.e. all
        packets 0 to nPackets, same frame number). purely virtual func \param
        data pointer to the memory to be analyzed \param ndata reference to the
@@ -72,276 +360,16 @@ template <class dataType> class slsDetectorData {
     */
     virtual char *findNextFrame(char *data, int &ndata, int dsize) = 0;
 
-    //Returns a pointer to the next complete frame, if none found nullptr
-    //data needs to be deallocated by caller
-    virtual char *readNextFrame(std::ifstream &filebin) = 0;
-
-
-
-
-
-    //END Virtual functions
-
     /**
-       defines the data map (as offset) - no error checking if datasize and
-       offsets are compatible! \param dMap array of size nx*ny storing the
-       pointers to the data in the dataset (as offset). If NULL (default),the
-       data are arranged as if read out row by row
-       (dataMap[iy][ix]=(iy*nx+ix)*sizeof(dataType);)
-    */
-    void setDataMap(int **dMap = NULL);
 
-    /**
+      Loops over a file stream until a complete frame is found (i.e. all packets
-       defines the data mask i.e. the polarity of the data
+      0 to nPackets, same frame number). Can be overloaded for different kind of
-       \param dMask Array of size nx*ny storing the polarity of the data in the
+      detectors! \param filebin input file stream (binary) \returns pointer to
-       dataset (should be 0 if no inversion is required, 0xffffffff is inversion
+      the begin of the last good frame, NULL if no frame is found or last frame
-       is required)
+      is incomplete
 
     */
-    void setDataMask(dataType **dMask = NULL);
+    virtual char *readNextFrame(ifstream &filebin) = 0;
-    /**
-       defines the region of interest and/or the bad channels mask
-       \param dROI Array of size nx*ny. The ements are 1s if the channel is
-       good or in the ROI, 0 is bad or out of the ROI. NULL (default) means all
-       1s.
-
-    */
-    void setDataROIMask(int **dROI = NULL);
-
-    /**
-       Define bad channel or roi mask for a single channel
-       \param ix channel x coordinate
-       \param iy channel y coordinate (1 for strips)
-       \param i 1 if pixel is good (or in the roi), 0 if bad
-       \returns 1 if pixel is good, 0 if it's bad, -1 if pixel is out of range
-    */
-    int setGood(int ix, int iy, int i = 1);
-
-    // returns 1 if pixel is good, 0 if it's bad, -1 if pixel is out of range
-    int isGood(int ix, int iy);
-
-    // returns total number of channels, outparam npx and npy x,y dimensions
-    int getDetectorSize(int &npx, int &npy);
-
-    /** Returns the size of the data frame */
-    int getDataSize() { return dataSize; };
-
-    /** changes the size of the data frame */
-    int setDataSize(int d) {
-        dataSize = d;
-        return dataSize;
-    };
-
-    void newFrame() { isOrdered = 0; };
-
-    /**
-       Returns the value of the selected channel for the given dataset. Virtual
-       function, can be overloaded. \param data pointer to the dataset
-       (including headers etc) \param ix pixel number in the x direction \param
-       iy pixel number in the y direction \returns data for the selected
-       channel, with inversion if required
-
-    */
-
-};
-
-template <typename dataType>
-slsDetectorData<dataType>::slsDetectorData(int npx, int npy, int dsize,
-                                           int **dMap, dataType **dMask,
-                                           int **dROI)
-    : nx(npx), ny(npy), dataSize(dsize), orderedData(NULL), isOrdered(0) {
-
-    int el = dsize / sizeof(dataType);
-    xmap = new int[el];
-    ymap = new int[el];
-
-    orderedData = new dataType *[ny];
-    dataMap = new int *[ny];
-    dataMask = new dataType *[ny];
-    dataROIMask = new int *[ny];
-    for (int i = 0; i < ny; i++) {
-        dataMap[i] = new int[nx];
-        orderedData[i] = new dataType[nx];
-        dataMask[i] = new dataType[nx];
-        dataROIMask[i] = new int[nx];
-        for (int j = 0; j < nx; j++)
-            dataROIMask[i][j] = 1;
-    }
-
-    for (int ip = 0; ip < el; ip++) {
-        xmap[ip] = -1;
-        ymap[ip] = -1;
-    }
-
-    setDataMap(dMap);
-    setDataMask(dMask);
-    setDataROIMask(dROI);
-}
-
-template <typename dataType> slsDetectorData<dataType>::~slsDetectorData() {
-    for (int i = 0; i < ny; i++) {
-        delete[] dataMap[i];
-        delete[] dataMask[i];
-        delete[] dataROIMask[i];
-        delete[] orderedData[i];
-    }
-    delete[] dataMap;
-    delete[] dataMask;
-    delete[] dataROIMask;
-    delete[] orderedData;
-    delete[] xmap;
-    delete[] ymap;
-}
-
-template <typename dataType>
-void slsDetectorData<dataType>::setDataMap(int **dMap) {
-
-    int ip = 0;
-    int ix, iy;
-    if (dMap == NULL) {
-        for (iy = 0; iy < ny; iy++) {
-            for (ix = 0; ix < nx; ix++) {
-                dataMap[iy][ix] = (iy * nx + ix) * sizeof(dataType);
-            }
-        }
-    } else {
-        // cout << "set dmap "<< dataMap << " " << dMap << endl;
-        for (iy = 0; iy < ny; iy++) {
-            // cout << iy << endl;
-            for (ix = 0; ix < nx; ix++) {
-                dataMap[iy][ix] = dMap[iy][ix];
-                // cout << ix << " " << iy << endl;
-                /*ip=dataMap[ix][iy]/sizeof(dataType);
-                  xmap[ip]=ix;
-                  ymap[ip]=iy;Annaa*/
-            }
-        }
-    }
-    for (iy = 0; iy < ny; iy++) {
-        for (ix = 0; ix < nx; ix++) {
-            ip = dataMap[iy][ix] / sizeof(dataType);
-            xmap[ip] = ix;
-            ymap[ip] = iy;
-        }
-    }
-
-    // cout << "nx:" <<nx << " ny:" << ny << endl;
-}
-
-template <typename dataType>
-void slsDetectorData<dataType>::setDataMask(dataType **dMask) {
-
-    if (dMask != NULL) {
-
-        for (int iy = 0; iy < ny; iy++)
-            for (int ix = 0; ix < nx; ix++)
-                dataMask[iy][ix] = dMask[iy][ix];
-    } else {
-        for (int iy = 0; iy < ny; iy++)
-            for (int ix = 0; ix < nx; ix++)
-                dataMask[iy][ix] = 0;
-    }
-}
-
-template <typename dataType>
-void slsDetectorData<dataType>::setDataROIMask(int **dROI) {
-    if (dROI != NULL) {
-
-        for (int iy = 0; iy < ny; iy++)
-            for (int ix = 0; ix < nx; ix++)
-                dataROIMask[iy][ix] = dROI[iy][ix];
-    } else {
-
-        for (int iy = 0; iy < ny; iy++)
-            for (int ix = 0; ix < nx; ix++)
-                dataROIMask[iy][ix] = 1;
-    }
-}
-
-template <typename dataType>
-int slsDetectorData<dataType>::setGood(int ix, int iy, int i) {
-    if (ix >= 0 && ix < nx && iy >= 0 && iy < ny)
-        dataROIMask[iy][ix] = i;
-    return isGood(ix, iy);
-}
-
-template <typename dataType>
-int slsDetectorData<dataType>::isGood(int ix, int iy) {
-    if (ix >= 0 && ix < nx && iy >= 0 && iy < ny)
-        return dataROIMask[iy][ix];
-    else
-        return -1;
-};
-
-template <typename dataType>
-int slsDetectorData<dataType>::getDetectorSize(int &npx, int &npy) {
-    npx = nx;
-    npy = ny;
-    return nx * ny;
-}
-
-template <typename dataType>
-void slsDetectorData<dataType>::getPixel(int ip, int &x, int &y) {
-    x = xmap[ip];
-    y = ymap[ip];
-}
-
-template <typename dataType>
-dataType **slsDetectorData<dataType>::getData(char *ptr, int dsize) {
-    int el = dsize / sizeof(dataType);
-    // dataType **data;
-    int ix, iy;
-    // data=new dataType*[ny];
-    // for(int i = 0; i < ny; i++) {
-    //   data[i]=new dataType[nx];
-    // }
-    isOrdered = 0;
-    if (dsize <= 0 || dsize > dataSize)
-        dsize = dataSize;
-
-    for (int ip = 0; ip < (el); ip++) {
-        getPixel(ip, ix, iy);
-        if (ix >= 0 && ix < nx && iy >= 0 && iy < ny) {
-            // data[iy][ix]=getChannel(ptr,ix,iy);
-            orderedData[iy][ix] = *(ptr + ip); // getChannel(ptr,ix,iy);
-        }
-    }
-    isOrdered = 1;
-    return orderedData;
-}
-
-template <typename dataType>
-double **slsDetectorData<dataType>::getImage(char *ptr, int dsize) {
-
-    double **data;
-    int ix, iy;
-    data = new double *[ny];
-    for (int i = 0; i < ny; i++) {
-        data[i] = new double[nx];
-    }
-    int el = dsize / sizeof(dataType);
-    if (dsize <= 0 || dsize > dataSize)
-        dsize = dataSize;
-    for (int ip = 0; ip < el; ip++) {
-        getPixel(ip, ix, iy);
-        if (ix >= 0 && ix < nx && iy >= 0 && iy < ny) {
-            data[iy][ix] = getValue(ptr, ix, iy);
-        }
-    }
-    return data;
-}
-template <typename dataType>
-dataType slsDetectorData<dataType>::getChannel(char *data, int ix, int iy) {
-    dataType m = 0, d = 0;
-    if (ix >= 0 && ix < nx && iy >= 0 && iy < ny && dataMap[iy][ix] >= 0 &&
-        dataMap[iy][ix] < dataSize) {
-        m = dataMask[iy][ix];
-        if (isOrdered == 0)
-            d = *((dataType *)(data + getPointer(ix, iy)));
-        else
-            d = orderedData[iy][ix];
-    }
-    return d ^ m;
 };
 
 #endif

slsDetectorCalibration/interpolatingDetector.h

@@ -149,7 +149,7 @@ class interpolatingDetector : public singlePhotonDetector {
     {
         nph = addFrame(data, val, 1);
         if (interp)
-            return interp->getFlatFieldDistribution();
+            return interp->getFlatField();
         else
             return NULL;
     };

slsDetectorCalibration/interpolations/eta2InterpolationBase.h

@@ -238,96 +238,96 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
 
         //     cout <<"******"<< etax << " " << etay << endl;
 
-        return addToFlatFieldDistribution(etax, etay);
+        return addToFlatField(etax, etay);
     }
 
-    /* virtual int addToFlatField(double totquad, int quad, double *cl, */
+    virtual int addToFlatField(double totquad, int quad, double *cl,
-    /*                            double &etax, double &etay) { */
+                               double &etax, double &etay) {
-    /*     double cc[2][2]; */
+        double cc[2][2];
-    /*     int xoff = 0, yoff = 0; */
+        int xoff = 0, yoff = 0;
 
-    /*     switch (quad) { */
+        switch (quad) {
-    /*     case BOTTOM_LEFT: */
+        case BOTTOM_LEFT:
-    /*         xoff = 0; */
+            xoff = 0;
-    /*         yoff = 0; */
+            yoff = 0;
-    /*         break; */
+            break;
-    /*     case BOTTOM_RIGHT: */
+        case BOTTOM_RIGHT:
-    /*         xoff = 1; */
+            xoff = 1;
-    /*         yoff = 0; */
+            yoff = 0;
-    /*         break; */
+            break;
-    /*     case TOP_LEFT: */
+        case TOP_LEFT:
-    /*         xoff = 0; */
+            xoff = 0;
-    /*         yoff = 1; */
+            yoff = 1;
-    /*         break; */
+            break;
-    /*     case TOP_RIGHT: */
+        case TOP_RIGHT:
-    /*         xoff = 1; */
+            xoff = 1;
-    /*         yoff = 1; */
+            yoff = 1;
-    /*         break; */
+            break;
-    /*     default:; */
+        default:;
-    /*     } */
+        }
-    /*     cc[0][0] = cl[xoff + 3 * yoff]; */
+        cc[0][0] = cl[xoff + 3 * yoff];
-    /*     cc[1][0] = cl[(yoff + 1) * 3 + xoff]; */
+        cc[1][0] = cl[(yoff + 1) * 3 + xoff];
-    /*     cc[0][1] = cl[yoff * 3 + xoff + 1]; */
+        cc[0][1] = cl[yoff * 3 + xoff + 1];
-    /*     cc[1][1] = cl[(yoff + 1) * 3 + xoff + 1]; */
+        cc[1][1] = cl[(yoff + 1) * 3 + xoff + 1];
 
-    /*     /\* cout << cl[0] << " " << cl[1] << " " << cl[2] << endl;   *\/ */
+        /* cout << cl[0] << " " << cl[1] << " " << cl[2] << endl;   */
-    /*     /\* cout << cl[3] << " " << cl[4] << " " << cl[5] << endl;   *\/ */
+        /* cout << cl[3] << " " << cl[4] << " " << cl[5] << endl;   */
-    /*     /\* cout << cl[6] << " " << cl[7] << " " << cl[8] << endl;   *\/ */
+        /* cout << cl[6] << " " << cl[7] << " " << cl[8] << endl;   */
-    /*     /\* cout <<"******"<<totquad << " " << quad << endl;  *\/ */
+        /* cout <<"******"<<totquad << " " << quad << endl;  */
-    /*     /\* cout << cc[0][0]<< " " << cc[0][1] << endl;  *\/ */
+        /* cout << cc[0][0]<< " " << cc[0][1] << endl;  */
-    /*     /\* cout << cc[1][0]<< " " << cc[1][1] << endl;  *\/ */
+        /* cout << cc[1][0]<< " " << cc[1][1] << endl;  */
-    /*     // calcMyEta(totquad,quad,cl,etax, etay); */
+        // calcMyEta(totquad,quad,cl,etax, etay);
-    /*     calcEta(totquad, cc, etax, etay); */
+        calcEta(totquad, cc, etax, etay);
 
-    /*     //     cout <<"******"<< etax << " " << etay << endl; */
+        //     cout <<"******"<< etax << " " << etay << endl;
 
-    /*     return addToFlatFieldDistribution(etax, etay); */
+        return addToFlatField(etax, etay);
-    /* } */
+    }
 
     //////////////////////////////////////////////////////////////////////////////////////
-    /* virtual int addToFlatField(double *cluster, double &etax, double &etay) { */
+    virtual int addToFlatField(double *cluster, double &etax, double &etay) {
-    /*     double sDum[2][2]; */
+        double sDum[2][2];
-    /*     double tot, totquad; */
+        double tot, totquad;
-    /*     // int corner; */
+        // int corner;
-    /*     // corner= */
+        // corner=
-    /*     calcQuad(cluster, tot, totquad, sDum); */
+        calcQuad(cluster, tot, totquad, sDum);
 
-    /*     // double xpos_eta,ypos_eta; */
+        // double xpos_eta,ypos_eta;
-    /*     // double dX,dY; */
+        // double dX,dY;
 
-    /*     calcEta(totquad, sDum, etax, etay); */
+        calcEta(totquad, sDum, etax, etay);
 
-    /*     return addToFlatField(etax, etay); */
+        return addToFlatField(etax, etay);
-    /* }; */
+    };
 
-    /* virtual int addToFlatField(int *cluster, double &etax, double &etay) { */
+    virtual int addToFlatField(int *cluster, double &etax, double &etay) {
-    /*     double sDum[2][2]; */
+        double sDum[2][2];
-    /*     double tot, totquad; */
+        double tot, totquad;
-    /*     // int corner; */
+        // int corner;
-    /*     // corner= */
+        // corner=
-    /*     calcQuad(cluster, tot, totquad, sDum); */
+        calcQuad(cluster, tot, totquad, sDum);
 
-    /*     // double xpos_eta,ypos_eta; */
+        // double xpos_eta,ypos_eta;
-    /*     // double dX,dY; */
+        // double dX,dY;
 
-    /*     calcEta(totquad, sDum, etax, etay); */
+        calcEta(totquad, sDum, etax, etay);
 
-    /*     return addToFlatField(etax, etay); */
+        return addToFlatField(etax, etay);
-    /* }; */
+    };
 
-/*     virtual int addToFlatFieldDistribution(double etax, double etay) { */
+    virtual int addToFlatField(double etax, double etay) {
-/* #ifdef MYROOT1 */
+#ifdef MYROOT1
-/*         heta->Fill(etax, etay); */
+        heta->Fill(etax, etay);
-/* #endif */
+#endif
-/* #ifndef MYROOT1 */
+#ifndef MYROOT1
-/*         int ex, ey; */
+        int ex, ey;
-/*         ex = (etax - etamin) / etastepX; */
+        ex = (etax - etamin) / etastepX;
-/*         ey = (etay - etamin) / etastepY; */
+        ey = (etay - etamin) / etastepY;
-/*         if (ey < nbetaY && ex < nbetaX && ex >= 0 && ey >= 0) */
+        if (ey < nbetaY && ex < nbetaX && ex >= 0 && ey >= 0)
-/*             heta[ey * nbetaX + ex]++; */
+            heta[ey * nbetaX + ex]++;
-/* #endif */
+#endif
-/*         return 0; */
+        return 0;
-/*     }; */
+    };
 
     virtual int *getInterpolatedImage() {
         int ipx, ipy;

slsDetectorCalibration/interpolations/eta3InterpolationBase.h

@@ -205,44 +205,44 @@ class eta3InterpolationBase : public virtual etaInterpolationBase {
                                double &etay) {
 
         calcEta3(cl, etax, etay, totquad);
-        return addToFlatFieldDistribution(etax, etay);
+        return addToFlatField(etax, etay);
     }
 
-    /* virtual int addToFlatField(double totquad, int quad, double *cl, */
+    virtual int addToFlatField(double totquad, int quad, double *cl,
-    /*                            double &etax, double &etay) { */
+                               double &etax, double &etay) {
 
-    /*     calcEta3(cl, etax, etay, totquad); */
+        calcEta3(cl, etax, etay, totquad);
-    /*     return addToFlatField(etax, etay); */
+        return addToFlatField(etax, etay);
-    /* } */
+    }
 
     //////////////////////////////////////////////////////////////////////////////////////
-    /* virtual int addToFlatField(double *cluster, double &etax, double &etay) { */
+    virtual int addToFlatField(double *cluster, double &etax, double &etay) {
-    /*     double totquad; */
+        double totquad;
-    /*     calcEta3(cluster, etax, etay, totquad); */
+        calcEta3(cluster, etax, etay, totquad);
-    /*     return addToFlatField(etax, etay); */
+        return addToFlatField(etax, etay);
-    /* }; */
+    };
 
-    /* virtual int addToFlatField(int *cluster, double &etax, double &etay) { */
+    virtual int addToFlatField(int *cluster, double &etax, double &etay) {
 
-    /*     double totquad; */
+        double totquad;
 
-    /*     calcEta3(cluster, etax, etay, totquad); */
+        calcEta3(cluster, etax, etay, totquad);
-    /*     return addToFlatField(etax, etay); */
+        return addToFlatField(etax, etay);
-    /* }; */
+    };
 
-/*     virtual int addToFlatField(double etax, double etay) { */
+    virtual int addToFlatField(double etax, double etay) {
-/* #ifdef MYROOT1 */
+#ifdef MYROOT1
-/*         heta->Fill(etax, etay); */
+        heta->Fill(etax, etay);
-/* #endif */
+#endif
-/* #ifndef MYROOT1 */
+#ifndef MYROOT1
-/*         int ex, ey; */
+        int ex, ey;
-/*         ex = (etax - etamin) / etastepX; */
+        ex = (etax - etamin) / etastepX;
-/*         ey = (etay - etamin) / etastepY; */
+        ey = (etay - etamin) / etastepY;
-/*         if (ey < nbetaY && ex < nbetaX && ex >= 0 && ey >= 0) */
+        if (ey < nbetaY && ex < nbetaX && ex >= 0 && ey >= 0)
-/*             heta[ey * nbetaX + ex]++; */
+            heta[ey * nbetaX + ex]++;
-/* #endif */
+#endif
-/*         return 0; */
+        return 0;
-/*     }; */
+    };
 
     /*  protected: */
 

slsDetectorCalibration/interpolations/etaInterpolationAdaptiveBins.h

@@ -3,7 +3,7 @@
 #ifndef ETA_INTERPOLATION_ADAPTIVEBINS_H
 #define ETA_INTERPOLATION_ADAPTIVEBINS_H
 
-#include "sls/tiffIO.h"
+#include "tiffIO.h"
 #include <cmath>
 //#include "etaInterpolationBase.h"
 #include "etaInterpolationPosXY.h"

slsDetectorCalibration/interpolations/etaInterpolationBase.h

@@ -10,7 +10,7 @@
 #include <TTree.h>
 #endif
 #include "slsInterpolation.h"
-#include "sls/tiffIO.h"
+#include "tiffIO.h"
 #include <cmath>
 
 class etaInterpolationBase : public slsInterpolation {
@@ -128,7 +128,7 @@ class etaInterpolationBase : public slsInterpolation {
         return NULL;
     };
 
-    void *readFlatField(const char *imgname, double emin = 1, double emax = 0) {
+    int readFlatField(const char *imgname, double emin = 1, double emax = 0) {
         if (emax >= 1)
             etamax = emax;
         if (emin <= 0)
@@ -169,9 +169,9 @@ class etaInterpolationBase : public slsInterpolation {
                 }
             }
             delete[] gm;
-            return heta;
+            return 1;
         }
-        return NULL;
+        return 0;
     };
 
     float *gethhx() {
@@ -183,17 +183,12 @@ class etaInterpolationBase : public slsInterpolation {
         // hhy->Scale((double)nSubPixels);
         return hhy;
     };
-    virtual int addToFlatFieldDistribution(double etax, double etay) {
+    virtual int addToFlatField(double etax, double etay) {
-#ifdef MYROOT1
-        heta->Fill(etax, etay);
-#endif
-#ifndef MYROOT1
         int ex, ey;
         ex = (etax - etamin) / etastepX;
         ey = (etay - etamin) / etastepY;
         if (ey < nbetaY && ex < nbetaX && ex >= 0 && ey >= 0)
             heta[ey * nbetaX + ex]++;
-#endif
         return 0;
     };
 

slsDetectorCalibration/interpolations/etaInterpolationCleverAdaptiveBins.h

@@ -3,7 +3,7 @@
 #ifndef ETA_INTERPOLATION_CLEVER_ADAPTIVEBINS_H
 #define ETA_INTERPOLATION_CLEVER_ADAPTIVEBINS_H
 
-#include "sls/tiffIO.h"
+#include "tiffIO.h"
 #include <cmath>
 //#include "etaInterpolationBase.h"
 #include "etaInterpolationAdaptiveBins.h"

slsDetectorCalibration/interpolations/etaInterpolationPosXY.h

@@ -3,7 +3,7 @@
 #ifndef ETA_INTERPOLATION_POSXY_H
 #define ETA_INTERPOLATION_POSXY_H
 
-//#include "sls/tiffIO.h"
+//#include "tiffIO.h"
 #include "eta2InterpolationBase.h"
 #include "eta3InterpolationBase.h"
 #include "etaInterpolationBase.h"

slsDetectorCalibration/interpolations/etaInterpolationRandomBins.h

@@ -3,7 +3,7 @@
 #ifndef ETA_INTERPOLATION_RANDOMBINS_H
 #define ETA_INTERPOLATION_RANDOMBINS_H
 
-#include "sls/tiffIO.h"
+#include "tiffIO.h"
 //#include "etaInterpolationBase.h"
 #include "etaInterpolationPosXY.h"
 #include <algorithm>

slsDetectorCalibration/interpolations/noInterpolation.h

@@ -78,20 +78,20 @@ class noInterpolation : public slsInterpolation {
     };
 
     //////////////////////////////////////////////////////////////////////////////////////
-    /* virtual int addToFlatField(double *cluster, double &etax, double &etay) { */
+    virtual int addToFlatField(double *cluster, double &etax, double &etay) {
-    /*     return 0; */
+        return 0;
-    /* }; */
+    };
 
-    /* virtual int addToFlatField(int *cluster, double &etax, double &etay) { */
+    virtual int addToFlatField(int *cluster, double &etax, double &etay) {
-    /*     return 0; */
+        return 0;
-    /* }; */
+    };
 
-    virtual int addToFlatFieldDistribution(double etax, double etay) { return 0; };
+    virtual int addToFlatField(double etax, double etay) { return 0; };
 
-    /* virtual int addToFlatField(double totquad, int quad, double *cl, */
+    virtual int addToFlatField(double totquad, int quad, double *cl,
-    /*                            double &etax, double &etay) { */
+                               double &etax, double &etay) {
-    /*     return 0; */
+        return 0;
-    /* }; */
+    };
 
     virtual int addToFlatField(double totquad, int quad, int *cl, double &etax,
                                double &etay) {

slsDetectorCalibration/interpolations/slsInterpolation.h

@@ -5,7 +5,7 @@
 
 #include <cstdlib>
 #ifndef MY_TIFF_IO_H
-#include "sls/tiffIO.h"
+#include "tiffIO.h"
 #endif
 
 #ifndef DEF_QUAD
@@ -175,31 +175,29 @@ class slsInterpolation {
         return hint;
     };
 
-    //virtual int addToFlatField(double *cluster, double &etax, double &etay) = 0;
+    virtual int addToFlatField(double *cluster, double &etax, double &etay) = 0;
-    //virtual int addToFlatField(int *cluster, double &etax, double &etay) = 0;
+    virtual int addToFlatField(int *cluster, double &etax, double &etay) = 0;
     virtual int addToFlatField(double totquad, int quad, int *cl, double &etax,
                                double &etay) = 0;
-    //virtual int addToFlatField(double totquad, int quad, double *cluster,
+    virtual int addToFlatField(double totquad, int quad, double *cluster,
-    //                           double &etax, double &etay) = 0;
+                               double &etax, double &etay) = 0;
-    virtual int addToFlatFieldDistribution(double etax, double etay) = 0;
+    virtual int addToFlatField(double etax, double etay) = 0;
 
-    virtual int *getFlatFieldDistribution() { return NULL; };
+    virtual int *getFlatField() { return NULL; };
-    virtual int *setFlatField(int *h, int nbx = -1, int nby = -1, 
+    virtual int *setFlatField(int *h, int nb = -1, double emin = -1,
-			      double emin = -1,
                               double emax = -1) {
         return NULL;
     };
     virtual void *writeFlatField(const char *imgname) { return NULL; };
-    virtual void *readFlatField(const char *imgname,
+    virtual void *readFlatField(const char *imgname, int nb = -1,
-				double emin = 1, double emax = 0) {
+                                double emin = 1, double emax = 0) {
         return NULL;
     };
-    virtual int *getFlatField(int &nbx, int &nby, double &emin, double &emax) {
+    virtual int *getFlatField(int &nb, double &emin, double &emax) {
-        nbx = 0;
+        nb = 0;
-	nby=0;
         emin = 0;
         emax = 0;
-        return getFlatFieldDistribution();
+        return getFlatField();
     };
 
     virtual void resetFlatField() = 0;

slsDetectorCalibration/jungfrauExecutables/jungfrauZmqProcess.cpp

@@ -23,7 +23,7 @@
 #endif
 #include "moench03CommonMode.h"
 #include "moench03GhostSummation.h"
-#include "sls/tiffIO.h"
+#include "tiffIO.h"
 #include <fstream>
 #include <iomanip>
 #include <sstream>

slsDetectorCalibration/moench03CommonMode.h

@@ -20,7 +20,7 @@ class commonModeSubtractionColumn : public commonModeSubtraction {
                 mean2[iroi] += val * val;
                 nCm[iroi]++;
                 if (nCm[iroi] > rows)
-                    std::cout << "Too many pixels added " << nCm[iroi] << std::endl;
+                    cout << "Too many pixels added " << nCm[iroi] << endl;
                 /* if (ix==10 && iy<20) */
                 /*   cout << " ** "<<val << " " << mean[iroi] << " " <<
                  * nCm[iroi] << " " << getCommonMode(ix, iy) << endl; */

slsDetectorCalibration/moenchExecutables/CMakeLists.txt

@@ -1,52 +1,57 @@
 # SPDX-License-Identifier: LGPL-3.0-or-other
 # Copyright (C) 2021 Contributors to the SLS Detector Package
 
-
+find_package(TIFF REQUIRED)
 
 set(MOENCH_EXECUTABLES)
 
 #Moench ZMQ
-add_executable(moench03ZmqProcess moenchZmqProcess.cpp)
+add_executable(moenchZmqProcess moenchZmqProcess.cpp ../tiffIO.cpp)
-target_compile_definitions(moench03ZmqProcess PRIVATE NEWZMQ INTERP)
+target_compile_definitions(moenchZmqProcess PRIVATE NEWZMQ INTERP)
-list(APPEND MOENCH_EXECUTABLES moench03ZmqProcess)
+list(APPEND MOENCH_EXECUTABLES moenchZmqProcess)
-
-#Moench HighZ ZMQ
-add_executable(moenchHighZZmqProcess moenchZmqProcess.cpp)
-target_compile_definitions(moenchHighZZmqProcess PRIVATE NEWZMQ INTERP HIGHZ)
-list(APPEND MOENCH_EXECUTABLES moenchHighZZmqProcess)
 
 #Moench04 ZMQ
-add_executable(moench04ZmqProcess moenchZmqProcess.cpp)
+add_executable(moench04ZmqProcess moenchZmqProcess.cpp ../tiffIO.cpp)
 target_compile_definitions(moench04ZmqProcess PRIVATE NEWZMQ INTERP MOENCH04)
 list(APPEND MOENCH_EXECUTABLES moench04ZmqProcess)
 
 
 #OFFLINE Processing? 
-add_executable(moench03RawDataProcess moenchRawDataProcess.cpp)
+add_executable(moenchClusterFinder moench03ClusterFinder.cpp  ../tiffIO.cpp)
-target_compile_definitions(moench03RawDataProcess PRIVATE)
+target_compile_definitions(moenchClusterFinder PRIVATE SAVE_ALL  NEWRECEIVER)
-list(APPEND MOENCH_EXECUTABLES moench03RawDataProcess)
+list(APPEND MOENCH_EXECUTABLES moenchClusterFinder)
 
-add_executable(moenchHighZRawDataProcess moenchRawDataProcess.cpp)
+add_executable(moenchClusterFinderHighZ moench03ClusterFinder.cpp  ../tiffIO.cpp)
-target_compile_definitions(moenchHighZRawDataProcess PRIVATE  HIGHZ)
+target_compile_definitions(moenchClusterFinderHighZ PRIVATE SAVE_ALL  NEWRECEIVER HIGHZ)
-list(APPEND MOENCH_EXECUTABLES moenchHighZRawDataProcess)
+list(APPEND MOENCH_EXECUTABLES moenchClusterFinderHighZ)
 
-add_executable(moench04RawDataProcess moenchRawDataProcess.cpp)
+add_executable(moenchMakeEta moench03Interpolation.cpp   ../tiffIO.cpp)
-target_compile_definitions(moench04RawDataProcess PRIVATE  MOENCH04)
+target_compile_definitions(moenchMakeEta PRIVATE FF)
-list(APPEND MOENCH_EXECUTABLES moench04RawDataProcess)
+list(APPEND MOENCH_EXECUTABLES moenchMakeEta)
 
-#interpolation stuff
+add_executable(moenchInterpolation moench03Interpolation.cpp   ../tiffIO.cpp)
-
-add_executable(moench03MakeEta moench03Interpolation.cpp)
-target_compile_definitions(moench03MakeEta PRIVATE FF)
-list(APPEND MOENCH_EXECUTABLES moench03MakeEta)
-
-add_executable(moench03Interpolation moench03Interpolation.cpp)
 #no compile defs
-list(APPEND MOENCH_EXECUTABLES moench03Interpolation)
+list(APPEND MOENCH_EXECUTABLES moenchInterpolation)
 
-add_executable(moench03NoInterpolation moench03NoInterpolation.cpp)
+add_executable(moenchNoInterpolation moench03NoInterpolation.cpp    ../tiffIO.cpp)
 #no compile defs
-list(APPEND MOENCH_EXECUTABLES moench03NoInterpolation)
+list(APPEND MOENCH_EXECUTABLES moenchNoInterpolation)
+
+add_executable(moenchPhotonCounter moenchPhotonCounter.cpp    ../tiffIO.cpp)
+target_compile_definitions(moenchPhotonCounter PRIVATE NEWRECEIVER)
+list(APPEND MOENCH_EXECUTABLES moenchPhotonCounter)
+
+add_executable(moenchAnalog moenchPhotonCounter.cpp    ../tiffIO.cpp)
+target_compile_definitions(moenchAnalog PRIVATE NEWRECEIVER ANALOG)
+list(APPEND MOENCH_EXECUTABLES moenchAnalog)
+
+add_executable(moenchPhotonCounterHighZ moenchPhotonCounter.cpp    ../tiffIO.cpp)
+target_compile_definitions(moenchPhotonCounterHighZ PRIVATE NEWRECEIVER HIGHZ)
+list(APPEND MOENCH_EXECUTABLES moenchPhotonCounterHighZ)
+
+add_executable(moenchAnalogHighZ moenchPhotonCounter.cpp    ../tiffIO.cpp)
+target_compile_definitions(moenchAnalogHighZ PRIVATE NEWRECEIVER ANALOG HIGHZ)
+list(APPEND MOENCH_EXECUTABLES moenchAnalogHighZ)
 
 
 foreach(exe ${MOENCH_EXECUTABLES})
@@ -56,8 +61,6 @@ foreach(exe ${MOENCH_EXECUTABLES})
         ../dataStructures 
         ../interpolations
         ../../slsReceiverSoftware/include/
-	    ../../slsSupportLib/include/
-        ${SLS_INTERNAL_RAPIDJSON_DIR}
     )
 
     target_link_libraries(${exe} 
@@ -65,11 +68,10 @@ foreach(exe ${MOENCH_EXECUTABLES})
         slsSupportStatic
         ${ZeroMQ_LIBRARIES} 
         pthread 
-        tiffio
+        TIFF::TIFF
 
         PRIVATE
         slsProjectWarnings
-        slsProjectOptions
     )
 
 
@@ -81,6 +83,8 @@ foreach(exe ${MOENCH_EXECUTABLES})
     endif()
 
     
+
+
 endforeach(exe ${MOENCH_EXECUTABLES})
 
 install(TARGETS ${MOENCH_EXECUTABLES} DESTINATION bin)

slsDetectorCalibration/moenchExecutables/moench03ClusterFinder.cpp

@@ -0,0 +1,219 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
+//#include "sls/ansi.h"
+#include <iostream>
+
+//#include "moench03T1ZmqData.h"
+#ifdef NEWRECEIVER
+#ifndef RECT
+#include "moench03T1ReceiverDataNew.h"
+#endif
+
+#ifdef RECT
+#include "moench03T1ReceiverDataNewRect.h"
+#endif
+
+#endif
+
+#ifdef CSAXS_FP
+#include "moench03T1ReceiverData.h"
+#endif
+#ifdef OLDDATA
+#include "moench03Ctb10GbT1Data.h"
+#endif
+
+#ifdef REORDERED
+#include "moench03T1ReorderedData.h"
+#endif
+
+// #include "interpolatingDetector.h"
+//#include "etaInterpolationPosXY.h"
+// #include "linearInterpolation.h"
+// #include "noInterpolation.h"
+#include "multiThreadedAnalogDetector.h"
+#include "singlePhotonDetector.h"
+//#include "interpolatingDetector.h"
+
+#include <fstream>
+#include <map>
+#include <stdio.h>
+#include <sys/stat.h>
+
+#include <ctime>
+using namespace std;
+
+int main(int argc, char *argv[]) {
+
+    if (argc < 6) {
+        cout << "Usage is " << argv[0] << "indir outdir fname runmin runmax "
+             << endl;
+        return 1;
+    }
+    int p = 10000;
+    int fifosize = 1000;
+    int nthreads = 1;
+    int nsubpix = 25;
+    int etabins = nsubpix * 10;
+    double etamin = -1, etamax = 2;
+    int csize = 3;
+    int nx = 400, ny = 400;
+    int save = 1;
+    int nsigma = 5;
+    int nped = 1000;
+    int ndark = 100;
+    int ok;
+    int iprog = 0;
+
+#ifdef NEWRECEIVER
+#ifdef RECT
+    cout << "Should be rectangular!" << endl;
+#endif
+    moench03T1ReceiverDataNew *decoder = new moench03T1ReceiverDataNew();
+    cout << "RECEIVER DATA WITH ONE HEADER!" << endl;
+#endif
+
+#ifdef CSAXS_FP
+    moench03T1ReceiverData *decoder = new moench03T1ReceiverData();
+    cout << "RECEIVER DATA WITH ALL HEADERS!" << endl;
+#endif
+
+#ifdef OLDDATA
+    moench03Ctb10GbT1Data *decoder = new moench03Ctb10GbT1Data();
+    cout << "OLD RECEIVER DATA!" << endl;
+#endif
+
+#ifdef REORDERED
+    moench03T1ReorderedData *decoder = new moench03T1ReorderedData();
+    cout << "REORDERED DATA!" << endl;
+#endif
+
+    decoder->getDetectorSize(nx, ny);
+    cout << "nx " << nx << " ny " << ny << endl;
+
+    // moench03T1ZmqData *decoder=new  moench03T1ZmqData();
+    singlePhotonDetector *filter =
+        new singlePhotonDetector(decoder, csize, nsigma, 1, 0, nped, 200);
+    //  char tit[10000];
+    cout << "filter " << endl;
+
+    // filter->readPedestals("/scratch/ped_100.tiff");
+    // interp->readFlatField("/scratch/eta_100.tiff",etamin,etamax);
+    // cout << "filter "<< endl;
+
+    int size = 327680; ////atoi(argv[3]);
+
+    int *image;
+    // int* image =new int[327680/sizeof(int)];
+    filter->newDataSet();
+
+    int ff, np;
+    int dsize = decoder->getDataSize();
+    cout << " data size is " << dsize;
+
+    char data[dsize];
+
+    ifstream filebin;
+    char *indir = argv[1];
+    char *outdir = argv[2];
+    char *fformat = argv[3];
+    int runmin = atoi(argv[4]);
+    int runmax = atoi(argv[5]);
+
+    char fname[10000];
+    char outfname[10000];
+    char imgfname[10000];
+    char pedfname[10000];
+    //  strcpy(pedfname,argv[6]);
+    char fn[10000];
+
+    std::time_t end_time;
+
+    FILE *of = NULL;
+    cout << "input directory is " << indir << endl;
+    cout << "output directory is " << outdir << endl;
+    cout << "fileformat is " << fformat << endl;
+
+    std::time(&end_time);
+    cout << std::ctime(&end_time) << endl;
+
+    char *buff;
+    multiThreadedAnalogDetector *mt =
+        new multiThreadedAnalogDetector(filter, nthreads, fifosize);
+
+    mt->setDetectorMode(ePhotonCounting);
+    mt->setFrameMode(eFrame);
+    mt->StartThreads();
+    mt->popFree(buff);
+
+    cout << "mt " << endl;
+
+    int ifr = 0;
+
+    for (int irun = runmin; irun < runmax; irun++) {
+        sprintf(fn, fformat, irun);
+        sprintf(fname, "%s/%s.raw", indir, fn);
+        sprintf(outfname, "%s/%s.clust", outdir, fn);
+        sprintf(imgfname, "%s/%s.tiff", outdir, fn);
+        std::time(&end_time);
+        cout << std::ctime(&end_time) << endl;
+        cout << fname << " " << outfname << " " << imgfname << endl;
+        filebin.open((const char *)(fname), ios::in | ios::binary);
+        //      //open file
+        if (filebin.is_open()) {
+            of = fopen(outfname, "w");
+            if (of) {
+                mt->setFilePointer(of);
+                //	cout << "file pointer set " << endl;
+            } else {
+                cout << "Could not open " << outfname << " for writing "
+                     << endl;
+                mt->setFilePointer(NULL);
+                return 1;
+            }
+            //     //while read frame
+            ff = -1;
+            while (decoder->readNextFrame(filebin, ff, np, buff)) {
+                //	cout << "*"<<ifr++<<"*"<<ff<< endl;
+                //	cout << ff << " " << np << endl;
+                //         //push
+                // for (int ix=0; ix<400; ix++)
+                //   for (int iy=0; iy<400; iy++) {
+                //     if (decoder->getChannel(buff, ix, iy)<3000 ||
+                //     decoder->getChannel(buff, ix, iy)>8000) {
+                //       cout <<  ifr << " " << ff << " " << ix << " " << iy <<
+                //       " " << decoder->getChannel(buff, ix, iy) << endl ;
+                //     }
+                //   }
+
+                mt->pushData(buff);
+                // 	//         //pop
+                mt->nextThread();
+                // // 		//	cout << " " << (void*)buff;
+                mt->popFree(buff);
+                ifr++;
+                if (ifr % 10000 == 0)
+                    cout << ifr << " " << ff << endl;
+                ff = -1;
+            }
+            cout << "--" << endl;
+            filebin.close();
+            //      //close file
+            //     //join threads
+            while (mt->isBusy()) {
+                ;
+            } // wait until all data are processed from the queues
+            if (of)
+                fclose(of);
+
+            mt->writeImage(imgfname);
+            mt->clearImage();
+
+            std::time(&end_time);
+            cout << std::ctime(&end_time) << endl;
+
+        } else
+            cout << "Could not open " << fname << " for reading " << endl;
+    }
+
+    return 0;
+}

slsDetectorCalibration/moenchExecutables/moench03Interpolation.cpp

@@ -47,6 +47,7 @@ int main(int argc, char *argv[]) {
 #endif
     int iarg = 4;
     char infname[10000];
+    char fname[10000];
     char outfname[10000];
 #ifndef FF
     iarg = 4;
@@ -73,17 +74,18 @@ int main(int argc, char *argv[]) {
     int etabins = 1000; // nsubpix*2*100;
     double etamin = -1, etamax = 2;
     // double etamin=-0.1, etamax=1.1;
-    //   double eta3min = -2, eta3max = 2;
+    double eta3min = -2, eta3max = 2;
+    int quad;
     double sum, totquad;
     double sDum[2][2];
-    double etax, etay;
+    double etax, etay, int_x, int_y;
-    // double eta3x, eta3y, int3_x, int3_y, noint_x, noint_y;
+    double eta3x, eta3y, int3_x, int3_y, noint_x, noint_y;
-   
+    int ok;
+    int f0 = -1;
     int ix, iy, isx, isy;
     int nframes = 0, lastframe = -1;
-    //double d_x, d_y, res = 5, xx, yy;
+    double d_x, d_y, res = 5, xx, yy;
-    int nph = 0, totph = 0;
+    int nph = 0, badph = 0, totph = 0;
-    //badph = 0, 
     FILE *f = NULL;
 
 #ifdef DOUBLE_SPH
@@ -94,8 +96,7 @@ int main(int argc, char *argv[]) {
     single_photon_hit cl(3, 3);
 #endif
 
-    //int f0 = -1;
+    int nSubPixels = nsubpix;
-    //  int nSubPixels = nsubpix;
 #ifndef NOINTERPOLATION
     eta2InterpolationPosXY *interp =
         new eta2InterpolationPosXY(NC, NR, nsubpix, etabins, etamin, etamax);
@@ -108,12 +109,7 @@ int main(int argc, char *argv[]) {
 #endif
 
 #ifndef FF
-    int quad; 
 #ifndef NOINTERPOLATION
-    char fname[10000];
-    int ok;
-    double int_x, int_y;
-    int *img;
     cout << "read ff " << argv[2] << endl;
     sprintf(fname, "%s", argv[2]);
     interp->readFlatField(fname);
@@ -125,6 +121,7 @@ int main(int argc, char *argv[]) {
     cout << "Will write eta file " << argv[2] << endl;
 #endif
 
+    int *img;
     float *totimg = new float[NC * NR * nsubpix * nsubpix];
     for (ix = 0; ix < NC; ix++) {
         for (iy = 0; iy < NR; iy++) {
@@ -152,7 +149,7 @@ int main(int argc, char *argv[]) {
         if (f) {
             cout << infname << endl;
             nframes = 0;
-            //f0 = -1;
+            f0 = -1;
 
             while (cl.read(f)) {
                 totph++;
@@ -160,21 +157,14 @@ int main(int argc, char *argv[]) {
                     lastframe = cl.iframe;
                     // cout << cl.iframe << endl;
                     // f0=cl.iframe;
-                    // if (nframes == 0)
+                    if (nframes == 0)
-                    //     f0 = lastframe;
+                        f0 = lastframe;
                     nframes++;
                 }
                 // quad=interp->calcQuad(cl.get_cluster(), sum, totquad, sDum);
-#ifndef FF
                 quad = interp->calcEta(cl.get_cluster(), etax, etay, sum,
                                        totquad, sDum);
-#endif
+                if (sum > cmin && totquad / sum > 0.8 && totquad / sum < 1.2 &&
-#ifdef FF
-                interp->calcEta(cl.get_cluster(), etax, etay, sum,
-                                       totquad, sDum);
-#endif
-
-      if (sum > cmin && totquad / sum > 0.8 && totquad / sum < 1.2 &&
                     sum < cmax) {
                     nph++;
                     //  if (sum>200 && sum<580) {
@@ -209,7 +199,7 @@ int main(int argc, char *argv[]) {
                     // 	    if (cl.x>50)
                     // #endif
                     // 	    if (etax!=0 && etay!=0 && etax!=1 && etay!=1)
-                    interp->addToFlatFieldDistribution(etax, etay);
+                    interp->addToFlatField(etax, etay);
                     //  if (etax==0 || etay==0) cout << cl.x << " " << cl.y <<
                     //  endl;
 
@@ -252,9 +242,9 @@ int main(int argc, char *argv[]) {
                     }
                 }
             }
-            // cout << "Read " << nframes << " frames (first frame: " << f0
+            cout << "Read " << nframes << " frames (first frame: " << f0
-            //      << " last frame: " << lastframe << " delta:" << lastframe - f0
+                 << " last frame: " << lastframe << " delta:" << lastframe - f0
-            //      << ") nph=" << nph << endl;
+                 << ") nph=" << nph << endl;
             interp->clearInterpolatedImage();
 #endif
 

slsDetectorCalibration/moenchExecutables/moenchPhotonCounter.cpp

@@ -2,33 +2,43 @@
 // Copyright (C) 2021 Contributors to the SLS Detector Package
 //#include "sls/ansi.h"
 #include <iostream>
-#undef CORR
+#define CORR
 
 #define C_GHOST 0.0004
 
 #define CM_ROWS 50
 
-#define RAWDATA
+//#define VERSION_V1
 
-#ifndef MOENCH04
+//#include "moench03T1ZmqData.h"
+#ifdef NEWRECEIVER
 #ifndef RECT
 #include "moench03T1ReceiverDataNew.h"
 #endif
-#endif
 
 #ifdef RECT
 #include "moench03T1ReceiverDataNewRect.h"
 #endif
 
-
-#ifdef MOENCH04
-#include "moench04CtbZmq10GbData.h"
 #endif
 
+#ifdef CSAXS_FP
+#include "moench03T1ReceiverData.h"
+#endif
+#ifdef OLDDATA
+#include "moench03Ctb10GbT1Data.h"
+#endif
+
+// #include "interpolatingDetector.h"
+//#include "etaInterpolationPosXY.h"
+// #include "linearInterpolation.h"
+// #include "noInterpolation.h"
 #include "multiThreadedCountingDetector.h"
+//#include "multiThreadedAnalogDetector.h"
 #include "moench03CommonMode.h"
 #include "moench03GhostSummation.h"
 #include "singlePhotonDetector.h"
+//#include "interpolatingDetector.h"
 
 #include <fstream>
 #include <map>
@@ -42,7 +52,7 @@ int main(int argc, char *argv[]) {
 
     if (argc < 4) {
         cout << "Usage is " << argv[0]
-             << "indir outdir fname(no extension) [runmin] [runmax] [pedfile (raw or tiff)] [threshold] "
+             << "indir outdir fname [runmin] [runmax] [pedfile] [threshold] "
                 "[nframes] [xmin xmax ymin ymax] [gainmap]"
              << endl;
         cout << "threshold <0 means analog; threshold=0 means cluster finder; "
@@ -54,39 +64,55 @@ int main(int argc, char *argv[]) {
         return 1;
     }
 
+    int p = 10000;
     int fifosize = 1000;
     int nthreads = 10;
+    int nsubpix = 25;
+    int etabins = nsubpix * 10;
+    double etamin = -1, etamax = 2;
     int csize = 3;
+    int save = 1;
     int nsigma = 5;
     int nped = 10000;
+    int ndark = 100;
+    int ok;
+    int iprog = 0;
 
     int cf = 0;
 
+#ifdef NEWRECEIVER
 #ifdef RECT
-    cout << "Should be rectangular but now it will crash! No data structure defined!" << endl;
+    cout << "Should be rectangular!" << endl;
 #endif
-#ifndef MOENCH04
     moench03T1ReceiverDataNew *decoder = new moench03T1ReceiverDataNew();
-    cout << "MOENCH03!" << endl;
+    cout << "RECEIVER DATA WITH ONE HEADER!" << endl;
 #endif
 
-#ifdef MOENCH04
+#ifdef CSAXS_FP
-    moench04CtbZmq10GbData *decoder = new moench04CtbZmq10GbData();
+    moench03T1ReceiverData *decoder = new moench03T1ReceiverData();
-    cout << "MOENCH04!" << endl;
+    cout << "RECEIVER DATA WITH ALL HEADERS!" << endl;
 #endif
 
+#ifdef OLDDATA
+    moench03Ctb10GbT1Data *decoder = new moench03Ctb10GbT1Data();
+    cout << "OLD RECEIVER DATA!" << endl;
+#endif
 
     int nx = 400, ny = 400;
 
     decoder->getDetectorSize(nx, ny);
-#ifdef CORR
+
     int ncol_cm = CM_ROWS;
     double xt_ghost = C_GHOST;
-#endif
     moench03CommonMode *cm = NULL;
     moench03GhostSummation *gs;
     double *gainmap = NULL;
-    //float *gm;
+    float *gm;
+
+    int size = 327680; ////atoi(argv[3]);
+
+    int *image;
+    // int* image =new int[327680/sizeof(int)];
 
     int ff, np;
     // cout << " data size is " << dsize;
@@ -143,6 +169,7 @@ int main(int argc, char *argv[]) {
     char fname[10000];
     char imgfname[10000];
     char cfname[10000];
+    char fn[10000];
 
     std::time_t end_time;
 
@@ -159,6 +186,19 @@ int main(int argc, char *argv[]) {
     cout << "Nframes is " << nframes << endl;
 
     uint32_t nnx, nny;
+    double *gmap;
+
+    // if (gainfname) {
+    //   gm=ReadFromTiff(gainfname, nny, nnx);
+    //   if (gm && nnx==nx && nny==ny) {
+    //     gmap=new double[nx*ny];
+    //     for (int i=0; i<nx*ny; i++) {
+    // 	gmap[i]=gm[i];
+    //     }
+    //     delete gm;
+    //   } else
+    //     cout << "Could not open gain map " << gainfname << endl;
+    // }
 
 #ifdef CORR
     cout << "Applying common mode  " << ncol_cm << endl;
@@ -180,15 +220,21 @@ int main(int argc, char *argv[]) {
     } else
         thr = 0.15 * thr;
     filter->newDataSet();
-    //int dsize = decoder->getDataSize();
+    int dsize = decoder->getDataSize();
 
+    char data[dsize];
+
+    //#ifndef ANALOG
     if (thr > 0) {
         cout << "threshold is " << thr << endl;
+        //#ifndef ANALOG
         filter->setThreshold(thr);
+        //#endif
         cf = 0;
 
     } else
         cf = 1;
+    //#endif
 
     filter->setROI(xmin, xmax, ymin, ymax);
     std::time(&end_time);
@@ -223,7 +269,7 @@ int main(int argc, char *argv[]) {
 
     int ifr = 0;
 
-    double *ped=new double[nx * ny];//, *ped1;
+    double ped[nx * ny], *ped1;
 
     if (pedfile) {
 
@@ -231,10 +277,10 @@ int main(int argc, char *argv[]) {
         sprintf(imgfname, "%s/pedestals.tiff", outdir);
 
         if (string(pedfile).find(".tif") == std::string::npos) {
-            sprintf(fname, "%s", pedfile);
+            sprintf(fname, "%s.raw", pedfile);
             cout << fname << endl;
             std::time(&end_time);
-            //cout << "aaa" << std::ctime(&end_time) << endl;
+            cout << "aaa" << std::ctime(&end_time) << endl;
 
             mt->setFrameMode(ePedestal);
             // sprintf(fn,fformat,irun);
@@ -264,12 +310,18 @@ int main(int argc, char *argv[]) {
                      << " for reading " << endl;
         } else {
             float *pp = ReadFromTiff(pedfile, nny, nnx);
-            if (pp && (int)nnx == nx && (int)nny == ny) {
+            if (pp && nnx == nx && nny == ny) {
                 for (int i = 0; i < nx * ny; i++) {
                     ped[i] = pp[i];
                 }
                 delete[] pp;
                 mt->setPedestal(ped);
+                // ped1=mt->getPedestal();
+
+                // for (int i=0; i<nx*ny; i++) {
+
+                //   cout << ped[i]<<"/"<<ped1[i] << " " ;
+                // }
                 cout << "Pedestal set from tiff file " << pedfile << endl;
             } else {
                 cout << "Could not open pedestal tiff file " << pedfile
@@ -290,11 +342,11 @@ int main(int argc, char *argv[]) {
         cout << "DATA ";
         // sprintf(fn,fformat,irun);
         sprintf(ffname, "%s/%s.raw", indir, fformat);
-        sprintf(fname, (const char*)ffname, irun);
+        sprintf(fname, ffname, irun);
         sprintf(ffname, "%s/%s.tiff", outdir, fformat);
-        sprintf(imgfname, (const char*)ffname, irun);
+        sprintf(imgfname, ffname, irun);
         sprintf(ffname, "%s/%s.clust", outdir, fformat);
-        sprintf(cfname, (const char*)ffname, irun);
+        sprintf(cfname, ffname, irun);
         cout << fname << " ";
         cout << imgfname << endl;
         std::time(&end_time);
@@ -323,10 +375,13 @@ int main(int argc, char *argv[]) {
             ifr = 0;
             while (decoder->readNextFrame(filebin, ff, np, buff)) {
                 if (np == 40) {
+                    //	cout << "*"<<ifr++<<"*"<<ff<< endl;
+                    //	cout << ff << " " << np << endl;
                     //         //push
                     mt->pushData(buff);
                     // 	//         //pop
                     mt->nextThread();
+                    // // 		//	cout << " " << (void*)buff;
                     mt->popFree(buff);
 
                     ifr++;
@@ -334,9 +389,15 @@ int main(int argc, char *argv[]) {
                         cout << ifr << " " << ff << endl;
                     if (nframes > 0) {
                         if (ifr % nframes == 0) {
+                            // The name has an additional "_fXXXXX" at the end,
+                            // where "XXXXX" is the initial frame number of the
+                            // image (0,1000,2000...)
+
                             sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat,
                                     ifile);
-                            sprintf(imgfname, (const char*)ffname, irun);
+                            sprintf(imgfname, ffname, irun);
+                            // cout << "Writing tiff to " << imgfname << " " <<
+                            // thr1 << endl;
                             mt->writeImage(imgfname, thr1);
                             mt->clearImage();
                             ifile++;
@@ -348,16 +409,18 @@ int main(int argc, char *argv[]) {
             }
             cout << "--" << endl;
             filebin.close();
+            //      //close file
+            //     //join threads
             while (mt->isBusy()) {
                 ;
             }
             if (nframes >= 0) {
                 if (nframes > 0) {
                     sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat, ifile);
-                    sprintf(imgfname, (const char*)ffname, irun);
+                    sprintf(imgfname, ffname, irun);
                 } else {
                     sprintf(ffname, "%s/%s.tiff", outdir, fformat);
-                    sprintf(imgfname, (const char*)ffname, irun);
+                    sprintf(imgfname, ffname, irun);
                 }
                 cout << "Writing tiff to " << imgfname << " " << thr1 << endl;
                 mt->writeImage(imgfname, thr1);

slsDetectorCalibration/moenchExecutables/moenchZmqProcess.cpp

@@ -1,9 +1,9 @@
 // SPDX-License-Identifier: LGPL-3.0-or-other
 // Copyright (C) 2021 Contributors to the SLS Detector Package
 //#define WRITE_QUAD
-//#define DEVELOPER
+#define DEVELOPER
 #undef CORR
-//#undef MOENCH04
+#undef MOENCH04
 
 #define C_GHOST 0.0004
 
@@ -11,21 +11,21 @@
 
 #include "sls/ZmqSocket.h"
 #include "sls/sls_detector_defs.h"
+#ifndef RECT
 #ifndef MOENCH04
-//#ifndef RECT
 #include "moench03T1ZmqDataNew.h"
-//#endif
-//#ifdef RECT
-//#include "moench03T1ZmqDataNewRect.h"
-//#endif
 #endif
 #ifdef MOENCH04
 #include "moench04CtbZmq10GbData.h"
 #endif
 
+#endif
+#ifdef RECT
+#include "moench03T1ZmqDataNewRect.h"
+#endif
 #include "moench03CommonMode.h"
 #include "moench03GhostSummation.h"
-#include "sls/tiffIO.h"
+#include "tiffIO.h"
 #include <fstream>
 #include <iomanip>
 #include <sstream>
@@ -156,7 +156,7 @@ int main(int argc, char *argv[]) {
     int send_something = 0;
 
     int maxSize = npx * npy * 2; // 32*2*8192;//5000;//atoi(argv[3]);
-    int size = maxSize+sizeof(int);          // 32*2*5000;
+    int size = maxSize;          // 32*2*5000;
     // int multisize=size;
     // int dataSize=size;
 
@@ -305,10 +305,10 @@ int main(int argc, char *argv[]) {
     // header variables
     uint64_t acqIndex = -1;
     uint64_t frameIndex = -1;
-// #ifdef MOENCH_BRANCH
+#ifdef MOENCH_BRANCH
-//     uint32_t subFrameIndex = -1;
+    uint32_t subFrameIndex = -1;
-//     int *flippedData = 0;
+    int *flippedData = 0;
-// #endif
+#endif
 
     uint64_t subframes = 0;
     // uint64_t  isubframe=0;
@@ -502,13 +502,13 @@ int main(int argc, char *argv[]) {
                     }
 #ifdef INTERP
                     else if (fMode == eFlat) {
-		      int nbx, nby;
+                        int nb;
                         double emi = 0, ema = 1;
-                        int *ff = mt->getFlatField(nbx, nby, emi, ema);
+                        int *ff = mt->getFlatField(nb, emi, ema);
-                        nnx = nbx;
+                        nnx = nb;
-                        nny = nby;
+                        nny = nb;
-                        dout = new int32_t[nbx * nby];
+                        dout = new int32_t[nb * nb];
-                        for (int ix = 0; ix < nbx * nby; ix++) {
+                        for (int ix = 0; ix < nb * nb; ix++) {
                             dout[ix] = ff[ix];
                         }
                     }

slsDetectorCalibration/multiThreadedAnalogDetector.h

@@ -182,10 +182,10 @@ class threadedAnalogDetector {
             interp->prepareInterpolation(ok);
     }
 
-    virtual int *getFlatFieldDistribution() {
+    virtual int *getFlatField() {
         slsInterpolation *interp = (det)->getInterpolation();
         if (interp)
-            return interp->getFlatFieldDistribution();
+            return interp->getFlatField();
         else
             return NULL;
     }
@@ -208,19 +208,19 @@ class threadedAnalogDetector {
         return NULL;
     }
 
-    void *readFlatField(const char *imgname,  double emin = 1,
+    void *readFlatField(const char *imgname, int nb = -1, double emin = 1,
                         double emax = 0) {
         slsInterpolation *interp = (det)->getInterpolation();
         if (interp)
-            return interp->readFlatField(imgname, emin, emax);
+            return interp->readFlatField(imgname, nb, emin, emax);
         return NULL;
     }
 
-    virtual int *getFlatField(int &nbx, int &nby, double &emi, double &ema) {
+    virtual int *getFlatField(int &nb, double emi, double ema) {
         slsInterpolation *interp = (det)->getInterpolation();
         int *ff = NULL;
         if (interp) {
-	  ff = interp->getFlatField(nbx, nby, emi, ema);
+            ff = interp->getFlatField(nb, emi, ema);
         }
         return ff;
     }

slsDetectorCalibration/multiThreadedInterpolatingDetector.h

@@ -25,10 +25,10 @@ class multiThreadedInterpolatingDetector
         //  }
     }
 
-    virtual int *getFlatFieldDistribution() { return (dets[0])->getFlatFieldDistribution(); }
+    virtual int *getFlatField() { return (dets[0])->getFlatField(); }
 
-    virtual int *getFlatField(int &nbx, int &nby, double &emi, double &ema) {
+    virtual int *getFlatField(int &nb, double emi, double ema) {
-      return (dets[0])->getFlatField(nbx, nby, emi, ema);
+        return (dets[0])->getFlatField(nb, emi, ema);
     }
 
     virtual int *setFlatField(int *h = NULL, int nb = -1, double emin = 1,
@@ -40,9 +40,9 @@ class multiThreadedInterpolatingDetector
         return dets[0]->writeFlatField(imgname);
     };
 
-    void *readFlatField(const char *imgname, double emin = 1,
+    void *readFlatField(const char *imgname, int nb = -1, double emin = 1,
                         double emax = 0) {
-        return (dets[0])->readFlatField(imgname, emin, emax);
+        return (dets[0])->readFlatField(imgname, nb, emin, emax);
     };
 
     /* virtual int setNSubPixels(int ns)  { return

slsDetectorCalibration/singlePhotonDetector.h

@@ -429,28 +429,23 @@ class singlePhotonDetector : public analogDetector<uint16_t> {
                     for (ic = -(clusterSize / 2); ic < (clusterSize / 2) + 1;
                          ic++) {
 
-                        if ((iy + ir) >= 0 && (iy + ir) < ny &&
+                        if ((iy + ir) >= iy && (iy + ir) < ny &&
-                            (ix + ic) >= 0 && (ix + ic) < nx) {
+                            (ix + ic) >= ix && (ix + ic) < nx) {
-
-
-                        if ((iy + ir) >= iy && (ix + ic) >= ix ) {
                             val[(iy + ir) * nx + ix + ic] =
                                 subtractPedestal(data, ix + ic, iy + ir, cm);
-
+                            v = &(val[(iy + ir) * nx + ix + ic]);
-			}
+                            tot += *v;
-			v = &(val[(iy + ir) * nx + ix + ic]);
+                            if (ir <= 0 && ic <= 0)
-			tot += *v;
+                                bl += *v;
-			if (ir <= 0 && ic <= 0)
+                            if (ir <= 0 && ic >= 0)
-			  bl += *v;
+                                br += *v;
-			if (ir <= 0 && ic >= 0)
+                            if (ir >= 0 && ic <= 0)
-			  br += *v;
+                                tl += *v;
-			if (ir >= 0 && ic <= 0)
+                            if (ir >= 0 && ic >= 0)
-			  tl += *v;
+                                tr += *v;
-			if (ir >= 0 && ic >= 0)
+                            if (*v > max) {
-			  tr += *v;
+                                max = *v;
-			if (*v > max) //{
+                            }
-			  max = *v;
-			//}
                         }
                     }
                 }
@@ -518,19 +513,12 @@ class singlePhotonDetector : public analogDetector<uint16_t> {
                         for (ic = -(clusterSize / 2);
                              ic < (clusterSize / 2) + 1; ic++) {
                             if ((iy + ir) >= 0 && (iy + ir) < ny &&
-                                (ix + ic) >= 0 && (ix + ic) < nx) {
+                                (ix + ic) >= 0 && (ix + ic) < nx)
-			      (clusters + nph)
+                                (clusters + nph)
                                     ->set_data(val[(iy + ir) * nx + ix + ic],
                                                ic, ir);
-			      if (val[(iy + ir) * nx + ix + ic]>max) 
-				good=0;
-			    }
                         }
                     }
-		    if (good==0) {
-		      (clusters + nph)->print();
-		      cout << max << " " <<  val[iy * nx + ix] << endl;
-		    }
                     good = 1;
                     if (eMin > 0 && tot < eMin)
                         good = 0;

slsDetectorCalibration/single_photon_hit.h

@@ -216,18 +216,14 @@ class single_photon_hit {
 
         // int ix, iy;
 
-      printf("***************\n");
-      printf("** %d %d **\n",x,y);
         for (int iy = 0; iy < dy; iy++) {
             for (int ix = 0; ix < dx; ix++) {
                 printf("%d \t", data[ix + iy * dx]);
             }
             printf("\n");
         }
-      printf("***************\n");
     }
 
-
     /**
         assign the value to the element of the cluster matrix, with relative
        coordinates where the center of the cluster is (0,0) \param v value to be

slsDetectorCalibration/tiffIO.cpp

@@ -1,12 +1,26 @@
 // SPDX-License-Identifier: LGPL-3.0-or-other
 // Copyright (C) 2021 Contributors to the SLS Detector Package
-
+#ifndef MY_TIFF_IO_H
-#include "sls/tiffIO.h"
+#include "tiffIO.h"
+#endif
 #include <iostream>
-#include <tiffio.h>
+using namespace std;
+// #undef cbf_failnez
+// #define cbf_failnez(x)
+//   {
+//   int err;
+//   err = (x);
+//   if (err) {
+//   fprintf(stderr,"\nCBFlib fatal error %x \n",err);
+//   exit(-1);
+//   }
+//   }
 
 void *WriteToTiff(float *imgData, const char *imgname, int nrow, int ncol) {
-    constexpr uint32_t sampleperpixel = 1;
+    int sampleperpixel = 1;
+    // unsigned char * buff=NULL;
+    // tsize_t linebytes;
+    // cout << "--" <<endl;
     TIFF *tif = TIFFOpen(imgname, "w");
     if (tif) {
         TIFFSetField(tif, TIFFTAG_IMAGEWIDTH, ncol);
@@ -17,32 +31,50 @@ void *WriteToTiff(float *imgData, const char *imgname, int nrow, int ncol) {
         TIFFSetField(tif, TIFFTAG_PLANARCONFIG, PLANARCONFIG_CONTIG);
         TIFFSetField(tif, TIFFTAG_PHOTOMETRIC, PHOTOMETRIC_MINISBLACK);
         TIFFSetField(tif, TIFFTAG_SAMPLEFORMAT, SAMPLEFORMAT_IEEEFP);
+
+        // linebytes = sampleperpixel*ncol;
         TIFFSetField(tif, TIFFTAG_ROWSPERSTRIP,
                      TIFFDefaultStripSize(tif, ncol * sampleperpixel));
-
         for (int irow = 0; irow < nrow; irow++) {
             TIFFWriteScanline(tif, &imgData[irow * ncol], irow, 0);
         }
+
         TIFFClose(tif);
-    } else {
+    } else
-        std::cout << "could not open file " << imgname << " for writing\n";
+        cout << "could not open file " << imgname << " for writing " << endl;
-    }
+
-    return nullptr;
+    return NULL;
-}
+};
 
 float *ReadFromTiff(const char *imgname, uint32_t &nrow, uint32_t &ncol) {
+    // unsigned char * buff=NULL;
+
     TIFF *tif = TIFFOpen(imgname, "r");
     if (tif) {
+        uint32_t bps;
+        uint32_t sampleperpixel = 1;
+        // tsize_t linebytes;
+
+        uint32_t imagelength;
+
         TIFFGetField(tif, TIFFTAG_IMAGEWIDTH, &ncol);
         TIFFGetField(tif, TIFFTAG_IMAGELENGTH, &nrow);
+        TIFFSetField(tif, TIFFTAG_SAMPLESPERPIXEL, sampleperpixel);
+        TIFFSetField(tif, TIFFTAG_BITSPERSAMPLE, &bps);
+        TIFFGetField(tif, TIFFTAG_IMAGELENGTH, &imagelength);
+
         float *imgData = new float[ncol * nrow];
-        for (uint32_t irow = 0; irow < nrow; ++irow) {
+        // linebytes = sampleperpixel*ncol;
+        //   TIFFSetField(tif, TIFFTAG_ROWSPERSTRIP, TIFFDefaultStripSize(tif,
+        //   ncol*sampleperpixel));
+        for (uint32_t irow = 0; irow < nrow; irow++) {
+            // tiffreadscanline(tif, buf, row);
             TIFFReadScanline(tif, &imgData[irow * ncol], irow);
         }
+
         TIFFClose(tif);
         return imgData;
-    } else {
+    } else
-        std::cout << "could not open file " << imgname << " for reading\n";
+        cout << "could not open file " << imgname << " for reading " << endl;
-        return nullptr;
+    return NULL;
-    }
+};
-}

slsDetectorCalibration/tiffIO.h

@@ -0,0 +1,35 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
+#ifndef MY_TIFF_IO_H
+#define MY_TIFF_IO_H
+
+#include <fstream>
+#include <iomanip>
+#include <sstream>
+#include <stdio.h>
+#include <string>
+#include <vector>
+
+/*****************************************************************************/
+//
+// CBFlib must be installed to use this program
+//
+/*****************************************************************************/
+#include <tiffio.h>
+
+#undef cbf_failnez
+#define cbf_failnez(x)                                                         \
+    {                                                                          \
+        int err;                                                               \
+        err = (x);                                                             \
+        if (err) {                                                             \
+            fprintf(stderr, "\nCBFlib fatal error %x \n", err);                \
+            exit(-1);                                                          \
+        }                                                                      \
+    }
+
+void *WriteToTiff(float *imgData, const char *imgname, int nrow, int ncol);
+
+float *ReadFromTiff(const char *imgname, uint32_t &nrow, uint32_t &ncol);
+
+#endif

slsDetectorCalibration/tiffio/CMakeLists.txt

@@ -1,14 +0,0 @@
-find_package(TIFF REQUIRED)
-add_library(tiffio STATIC src/tiffIO.cpp)
-target_include_directories(tiffio PUBLIC include/)
-target_link_libraries(tiffio 
-    PUBLIC 
-        TIFF::TIFF 
-    PRIVATE 
-        slsProjectWarnings
-        slsProjectOptions
-)
-
-if(SLS_USE_TESTS)
-    add_subdirectory(tests)
-endif()

slsDetectorCalibration/tiffio/include/sls/tiffIO.h

@@ -1,16 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#pragma once
-#include <cstdint>
-
-//Write 32bit float data to tiff file
-//Always returns nullptr, prints message on failure
-void *WriteToTiff(float *imgData, const char *imgname, int nrow, int ncol);
-
-//Read 32bit float data from tiff file, returns pointer to data and sets
-//image dimensions in the out parameters nrow, ncol. 
-//Returns nullptr on failure
-//The caller is responsible to deallocate the memory that the returned
-//pointer points to. 
-float *ReadFromTiff(const char *imgname, uint32_t &nrow, uint32_t &ncol);
-

slsDetectorCalibration/tiffio/tests/CMakeLists.txt

@@ -1,5 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-target_sources(tests PRIVATE 
-                ${CMAKE_CURRENT_SOURCE_DIR}/test-tiffio.cpp
-)

slsDetectorCalibration/tiffio/tests/test-tiffio.cpp

@@ -1,54 +0,0 @@
-
-
-#include "catch.hpp"
-#include "sls/tiffIO.h"
-#include <cstdio>
-#include <ftw.h>
-#include <iostream>
-#include <vector>
-
-/* Call-back to the 'remove()' function called by nftw() */
-static int remove_callback(const char *pathname,
-                           __attribute__((unused)) const struct stat *sbuf,
-                           __attribute__((unused)) int type,
-                           __attribute__((unused)) struct FTW *ftwb) {
-    return remove(pathname);
-}
-
-TEST_CASE("Write and read back data from tiff file") {
-
-    std::vector<float> data{1, 2, 3, 4, 5, 6, 7, 8, 9};
-
-    /* Create the temporary directory */
-    char tmp[] = "/tmp/tmpdir.XXXXXX";
-    char *tmp_dirname = mkdtemp(tmp);
-
-    if (tmp_dirname == NULL) {
-        perror("tempdir: error: Could not create tmp directory");
-        CHECK(false);
-    }
-
-    std::string fname = std::string(tmp_dirname) + std::string("/test.tif");
-    std::cout << "Writing to: " << fname<< '\n';
-    
-    WriteToTiff(data.data(), fname.c_str(), 3, 3);
-
-    //Readback
-    uint32_t nrow, ncol;
-    float* ptr = ReadFromTiff(fname.c_str(), nrow, ncol);
-    CHECK(nrow == 3);
-    CHECK(ncol == 3);
-    uint32_t size = nrow*ncol;
-    for (uint32_t i = 0; i!=size; ++i){
-        CHECK(data[i] == ptr[i]);
-    }
-
-    delete[] ptr;
-
-    /* Delete the temporary directory */
-    if (nftw(tmp_dirname, remove_callback, FOPEN_MAX,
-             FTW_DEPTH | FTW_MOUNT | FTW_PHYS) == -1) {
-        perror("tempdir: error: ");
-        exit(EXIT_FAILURE);
-    }
-}

slsDetectorGui/forms/form_detectormain.ui

@@ -235,7 +235,6 @@
     </property>
     <addaction name="actionLoadConfiguration"/>
     <addaction name="actionLoadTrimbits"/>
-    <addaction name="actionSaveTrimbits"/>
     <addaction name="actionLoadParameters"/>
    </widget>
    <widget class="QMenu" name="menuModes">
@@ -420,11 +419,6 @@ p, li { white-space: pre-wrap; }
     <string>&amp;About</string>
    </property>
   </action>
-  <action name="actionSaveTrimbits">
-   <property name="text">
-    <string>Save Trimbits</string>
-   </property>
-  </action>
  </widget>
  <resources>
   <include location="../include/icons.qrc"/>

slsDetectorGui/forms/form_plot.ui

@@ -20,105 +20,7 @@
    <string>Form</string>
   </property>
   <layout class="QGridLayout" name="gridLayout">
-   <item row="1" column="5">
+   <item row="2" column="0" colspan="4">
-    <widget class="QLabel" name="lblRxRoiEnabled">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>120</width>
-       <height>0</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>16777215</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="palette">
-      <palette>
-       <active>
-        <colorrole role="WindowText">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>0</red>
-           <green>0</green>
-           <blue>255</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </active>
-       <inactive>
-        <colorrole role="WindowText">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>0</red>
-           <green>0</green>
-           <blue>255</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </inactive>
-       <disabled>
-        <colorrole role="WindowText">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>139</red>
-           <green>142</green>
-           <blue>142</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </disabled>
-      </palette>
-     </property>
-     <property name="text">
-      <string>Rx Roi Enabled</string>
-     </property>
-     <property name="alignment">
-      <set>Qt::AlignCenter</set>
-     </property>
-    </widget>
-   </item>
-   <item row="0" column="0" colspan="7">
-    <widget class="QGroupBox" name="boxPlot">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="font">
-      <font>
-       <family>Sans Serif</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="title">
-      <string>Sample Plot</string>
-     </property>
-     <property name="alignment">
-      <set>Qt::AlignCenter</set>
-     </property>
-     <property name="flat">
-      <bool>true</bool>
-     </property>
-     <layout class="QGridLayout" name="plotLayout">
-      <property name="margin">
-       <number>9</number>
-      </property>
-      <property name="spacing">
-       <number>0</number>
-      </property>
-     </layout>
-    </widget>
-   </item>
-   <item row="2" column="0" colspan="7">
     <widget class="QWidget" name="widgetStatistics" native="true">
      <property name="sizePolicy">
       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
@@ -310,69 +212,37 @@
      </property>
     </spacer>
    </item>
-   <item row="1" column="1">
+   <item row="0" column="0" colspan="4">
-    <widget class="QLabel" name="lblCompleteImage">
+    <widget class="QGroupBox" name="boxPlot">
      <property name="sizePolicy">
-      <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+      <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
        <horstretch>0</horstretch>
        <verstretch>0</verstretch>
       </sizepolicy>
      </property>
-     <property name="minimumSize">
+     <property name="font">
-      <size>
+      <font>
-       <width>120</width>
+       <family>Sans Serif</family>
-       <height>0</height>
+       <pointsize>10</pointsize>
-      </size>
+      </font>
      </property>
-     <property name="maximumSize">
+     <property name="title">
-      <size>
+      <string>Sample Plot</string>
-       <width>16777215</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="palette">
-      <palette>
-       <active>
-        <colorrole role="WindowText">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>0</red>
-           <green>150</green>
-           <blue>110</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </active>
-       <inactive>
-        <colorrole role="WindowText">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>0</red>
-           <green>150</green>
-           <blue>110</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </inactive>
-       <disabled>
-        <colorrole role="WindowText">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>139</red>
-           <green>142</green>
-           <blue>142</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </disabled>
-      </palette>
-     </property>
-     <property name="text">
-      <string>Complete Image</string>
      </property>
      <property name="alignment">
       <set>Qt::AlignCenter</set>
      </property>
+     <property name="flat">
+      <bool>true</bool>
+     </property>
+     <layout class="QGridLayout" name="plotLayout">
+      <property name="margin">
+       <number>9</number>
+      </property>
+      <property name="spacing">
+       <number>0</number>
+      </property>
+     </layout>
     </widget>
    </item>
    <item row="1" column="2">
@@ -385,7 +255,7 @@
      </property>
      <property name="minimumSize">
       <size>
-       <width>110</width>
+       <width>40</width>
        <height>0</height>
       </size>
      </property>
@@ -440,6 +310,71 @@
      </property>
     </widget>
    </item>
+   <item row="1" column="1">
+    <widget class="QLabel" name="lblCompleteImage">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>40</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>16777215</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="palette">
+      <palette>
+       <active>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>0</red>
+           <green>150</green>
+           <blue>110</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </active>
+       <inactive>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>0</red>
+           <green>150</green>
+           <blue>110</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </inactive>
+       <disabled>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>139</red>
+           <green>142</green>
+           <blue>142</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </disabled>
+      </palette>
+     </property>
+     <property name="text">
+      <string>Complete Image</string>
+     </property>
+     <property name="alignment">
+      <set>Qt::AlignCenter</set>
+     </property>
+    </widget>
+   </item>
   </layout>
  </widget>
  <resources/>

slsDetectorGui/forms/form_tab_developer.ui

@@ -32,29 +32,17 @@
    <string>Form</string>
   </property>
   <layout class="QGridLayout" name="gridLayout">
-   <item row="1" column="0" colspan="3">
+   <item row="0" column="0">
-    <widget class="QTabWidget" name="tabWidget">
+    <widget class="QLabel" name="lblReadout">
      <property name="sizePolicy">
-      <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
+      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
-       <horstretch>5</horstretch>
+       <horstretch>0</horstretch>
        <verstretch>0</verstretch>
       </sizepolicy>
      </property>
-     <property name="currentIndex">
+     <property name="text">
-      <number>1</number>
+      <string>Readout: </string>
      </property>
-     <widget class="QWidget" name="tabDAC">
-      <attribute name="title">
-       <string>DACs</string>
-      </attribute>
-      <layout class="QGridLayout" name="gridlayoutDac"/>
-     </widget>
-     <widget class="QWidget" name="tabADC">
-      <attribute name="title">
-       <string>ADCs</string>
-      </attribute>
-      <layout class="QGridLayout" name="gridlayoutAdc"/>
-     </widget>
     </widget>
    </item>
    <item row="0" column="1">
@@ -89,17 +77,143 @@
      </property>
     </spacer>
    </item>
-   <item row="0" column="0">
+   <item row="1" column="0">
-    <widget class="QLabel" name="lblReadout">
+    <widget class="QLabel" name="lblComboHV">
      <property name="sizePolicy">
       <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
        <horstretch>0</horstretch>
        <verstretch>0</verstretch>
       </sizepolicy>
      </property>
-     <property name="text">
+     <property name="toolTip">
-      <string>Readout: </string>
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage&lt;/p&gt;&lt;p&gt; #highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
      </property>
+     <property name="text">
+      <string>High Voltage: </string>
+     </property>
+    </widget>
+   </item>
+   <item row="1" column="1">
+    <widget class="QComboBox" name="comboHV">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>0</width>
+       <height>28</height>
+      </size>
+     </property>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage&lt;/p&gt;&lt;p&gt; #highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+     </property>
+     <item>
+      <property name="text">
+       <string>0</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>90</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>110</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>120</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>150</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>180</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>200</string>
+      </property>
+     </item>
+    </widget>
+   </item>
+   <item row="2" column="0">
+    <widget class="QLabel" name="lblSpinHV">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage. Range: 60 - 200V. Swich off high voltage by setting to 0.&lt;/p&gt;&lt;p&gt;-1 corresponds to different values from detectors.&lt;/p&gt;&lt;p&gt;#highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+     </property>
+     <property name="text">
+      <string>High Voltage: </string>
+     </property>
+    </widget>
+   </item>
+   <item row="2" column="1">
+    <widget class="QSpinBox" name="spinHV">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>0</width>
+       <height>28</height>
+      </size>
+     </property>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage. Range: 60 - 200V. Swich off high voltage by setting to 0.&lt;/p&gt;&lt;p&gt;-1 corresponds to different values from detectors.&lt;/p&gt;&lt;p&gt;#highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+     </property>
+     <property name="keyboardTracking">
+      <bool>false</bool>
+     </property>
+     <property name="minimum">
+      <number>-1</number>
+     </property>
+     <property name="maximum">
+      <number>200</number>
+     </property>
+    </widget>
+   </item>
+   <item row="3" column="0" colspan="3">
+    <widget class="QTabWidget" name="tabWidget">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
+       <horstretch>5</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="currentIndex">
+      <number>1</number>
+     </property>
+     <widget class="QWidget" name="tabDAC">
+      <attribute name="title">
+       <string>DACs</string>
+      </attribute>
+      <layout class="QGridLayout" name="gridlayoutDac"/>
+     </widget>
+     <widget class="QWidget" name="tabADC">
+      <attribute name="title">
+       <string>ADCs</string>
+      </attribute>
+      <layout class="QGridLayout" name="gridlayoutAdc"/>
+     </widget>
     </widget>
    </item>
   </layout>

slsDetectorGui/forms/form_tab_settings.ui

@@ -7,7 +7,7 @@
     <x>0</x>
     <y>0</y>
     <width>775</width>
-    <height>400</height>
+    <height>380</height>
    </rect>
   </property>
   <property name="sizePolicy">
@@ -32,99 +32,26 @@
    <string>Form</string>
   </property>
   <layout class="QGridLayout" name="gridLayout_2">
-   <item row="0" column="2" colspan="5">
+   <item row="4" column="3">
-    <widget class="QComboBox" name="comboHV">
+    <widget class="QCheckBox" name="chkCounter2">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>28</height>
-      </size>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage&lt;/p&gt;&lt;p&gt; #highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <item>
-      <property name="text">
-       <string>0</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>90</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>110</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>120</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>150</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>180</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>200</string>
-      </property>
-     </item>
-    </widget>
-   </item>
-   <item row="0" column="0">
-    <widget class="QLabel" name="lblComboHV">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage&lt;/p&gt;&lt;p&gt; #highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <property name="text">
-      <string>High Voltage: </string>
-     </property>
-    </widget>
-   </item>
-   <item row="4" column="0">
-    <widget class="QLabel" name="lblThreshold">
      <property name="enabled">
       <bool>false</bool>
      </property>
-     <property name="minimumSize">
-      <size>
-       <width>110</width>
-       <height>0</height>
-      </size>
-     </property>
      <property name="maximumSize">
       <size>
-       <width>110</width>
+       <width>50</width>
        <height>16777215</height>
       </size>
      </property>
      <property name="text">
-      <string>Threshold:</string>
+      <string>2</string>
+     </property>
+     <property name="checked">
+      <bool>true</bool>
      </property>
     </widget>
    </item>
-   <item row="6" column="4">
+   <item row="4" column="4">
     <widget class="QCheckBox" name="chkCounter3">
      <property name="enabled">
       <bool>false</bool>
@@ -143,23 +70,233 @@
      </property>
     </widget>
    </item>
-   <item row="4" column="14">
+   <item row="3" column="2" colspan="3">
-    <spacer name="horizontalSpacer_2">
+    <widget class="QComboBox" name="comboDynamicRange">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>140</width>
+       <height>25</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>140</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <item>
+      <property name="text">
+       <string>1.67772e+07</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>65535</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>255</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>7</string>
+      </property>
+     </item>
+    </widget>
+   </item>
+   <item row="2" column="2" colspan="3">
+    <widget class="QSpinBox" name="spinThreshold">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>140</width>
+       <height>25</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>140</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="keyboardTracking">
+      <bool>false</bool>
+     </property>
+     <property name="suffix">
+      <string> eV</string>
+     </property>
+     <property name="minimum">
+      <number>-100000</number>
+     </property>
+     <property name="maximum">
+      <number>100000</number>
+     </property>
+     <property name="singleStep">
+      <number>100</number>
+     </property>
+     <property name="value">
+      <number>-1</number>
+     </property>
+    </widget>
+   </item>
+   <item row="2" column="6">
+    <widget class="QSpinBox" name="spinThreshold3">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>140</width>
+       <height>25</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>140</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="keyboardTracking">
+      <bool>false</bool>
+     </property>
+     <property name="suffix">
+      <string> eV</string>
+     </property>
+     <property name="minimum">
+      <number>-100000</number>
+     </property>
+     <property name="maximum">
+      <number>100000</number>
+     </property>
+     <property name="singleStep">
+      <number>100</number>
+     </property>
+     <property name="value">
+      <number>-1</number>
+     </property>
+    </widget>
+   </item>
+   <item row="3" column="0">
+    <widget class="QLabel" name="lblDynamicRange">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>110</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>110</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="text">
+      <string>Dynamic Range:</string>
+     </property>
+    </widget>
+   </item>
+   <item row="5" column="2">
+    <spacer name="verticalSpacer">
      <property name="orientation">
-      <enum>Qt::Horizontal</enum>
+      <enum>Qt::Vertical</enum>
      </property>
      <property name="sizeType">
-      <enum>QSizePolicy::Expanding</enum>
+      <enum>QSizePolicy::Fixed</enum>
      </property>
      <property name="sizeHint" stdset="0">
       <size>
        <width>20</width>
-       <height>20</height>
+       <height>190</height>
       </size>
      </property>
     </spacer>
    </item>
-   <item row="2" column="0">
+   <item row="2" column="8">
+    <widget class="QPushButton" name="btnSetThreshold">
+     <property name="enabled">
+      <bool>true</bool>
+     </property>
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>100</width>
+       <height>30</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>16777215</width>
+       <height>30</height>
+      </size>
+     </property>
+     <property name="palette">
+      <palette>
+       <active>
+        <colorrole role="Shadow">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>20</red>
+           <green>20</green>
+           <blue>20</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </active>
+       <inactive>
+        <colorrole role="Shadow">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>20</red>
+           <green>20</green>
+           <blue>20</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </inactive>
+       <disabled>
+        <colorrole role="Shadow">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>20</red>
+           <green>20</green>
+           <blue>20</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </disabled>
+      </palette>
+     </property>
+     <property name="focusPolicy">
+      <enum>Qt::TabFocus</enum>
+     </property>
+     <property name="text">
+      <string>Set</string>
+     </property>
+     <property name="icon">
+      <iconset resource="../include/icons.qrc">
+       <normaloff>:/icons/images/rightArrow.png</normaloff>:/icons/images/rightArrow.png</iconset>
+     </property>
+     <property name="flat">
+      <bool>false</bool>
+     </property>
+    </widget>
+   </item>
+   <item row="0" column="0">
     <widget class="QLabel" name="lblSettings">
      <property name="enabled">
       <bool>true</bool>
@@ -181,7 +318,120 @@
      </property>
     </widget>
    </item>
-   <item row="6" column="2">
+   <item row="0" column="1">
+    <spacer name="horizontalSpacer">
+     <property name="orientation">
+      <enum>Qt::Horizontal</enum>
+     </property>
+     <property name="sizeType">
+      <enum>QSizePolicy::Fixed</enum>
+     </property>
+     <property name="sizeHint" stdset="0">
+      <size>
+       <width>20</width>
+       <height>20</height>
+      </size>
+     </property>
+    </spacer>
+   </item>
+   <item row="2" column="0">
+    <widget class="QLabel" name="lblThreshold">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>110</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>110</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="text">
+      <string>Threshold:</string>
+     </property>
+    </widget>
+   </item>
+   <item row="2" column="5">
+    <widget class="QSpinBox" name="spinThreshold2">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>140</width>
+       <height>25</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>140</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="keyboardTracking">
+      <bool>false</bool>
+     </property>
+     <property name="suffix">
+      <string> eV</string>
+     </property>
+     <property name="minimum">
+      <number>-100000</number>
+     </property>
+     <property name="maximum">
+      <number>100000</number>
+     </property>
+     <property name="singleStep">
+      <number>100</number>
+     </property>
+     <property name="value">
+      <number>-1</number>
+     </property>
+    </widget>
+   </item>
+   <item row="2" column="9">
+    <spacer name="horizontalSpacer_2">
+     <property name="orientation">
+      <enum>Qt::Horizontal</enum>
+     </property>
+     <property name="sizeType">
+      <enum>QSizePolicy::Expanding</enum>
+     </property>
+     <property name="sizeHint" stdset="0">
+      <size>
+       <width>20</width>
+       <height>20</height>
+      </size>
+     </property>
+    </spacer>
+   </item>
+   <item row="4" column="0">
+    <widget class="QLabel" name="lblCounter">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>110</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>110</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="text">
+      <string>Counters:</string>
+     </property>
+    </widget>
+   </item>
+   <item row="4" column="2">
     <widget class="QCheckBox" name="chkCounter1">
      <property name="enabled">
       <bool>false</bool>
@@ -200,7 +450,7 @@
      </property>
     </widget>
    </item>
-   <item row="2" column="2" colspan="9">
+   <item row="0" column="2" colspan="3">
     <widget class="QComboBox" name="comboSettings">
      <property name="enabled">
       <bool>true</bool>
@@ -214,7 +464,7 @@
      <property name="minimumSize">
       <size>
        <width>140</width>
-       <height>28</height>
+       <height>25</height>
       </size>
      </property>
      <property name="maximumSize">
@@ -339,269 +589,7 @@
      </item>
     </widget>
    </item>
-   <item row="4" column="11">
+   <item row="1" column="0">
-    <widget class="QSpinBox" name="spinThreshold2">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>140</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="keyboardTracking">
-      <bool>false</bool>
-     </property>
-     <property name="suffix">
-      <string> eV</string>
-     </property>
-     <property name="minimum">
-      <number>-100000</number>
-     </property>
-     <property name="maximum">
-      <number>100000</number>
-     </property>
-     <property name="singleStep">
-      <number>100</number>
-     </property>
-     <property name="value">
-      <number>-1</number>
-     </property>
-    </widget>
-   </item>
-   <item row="4" column="13">
-    <widget class="QPushButton" name="btnSetThreshold">
-     <property name="enabled">
-      <bool>true</bool>
-     </property>
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>100</width>
-       <height>30</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>16777215</width>
-       <height>30</height>
-      </size>
-     </property>
-     <property name="palette">
-      <palette>
-       <active>
-        <colorrole role="Shadow">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>20</red>
-           <green>20</green>
-           <blue>20</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </active>
-       <inactive>
-        <colorrole role="Shadow">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>20</red>
-           <green>20</green>
-           <blue>20</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </inactive>
-       <disabled>
-        <colorrole role="Shadow">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>20</red>
-           <green>20</green>
-           <blue>20</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </disabled>
-      </palette>
-     </property>
-     <property name="focusPolicy">
-      <enum>Qt::TabFocus</enum>
-     </property>
-     <property name="text">
-      <string>Set</string>
-     </property>
-     <property name="icon">
-      <iconset resource="../include/icons.qrc">
-       <normaloff>:/icons/images/rightArrow.png</normaloff>:/icons/images/rightArrow.png</iconset>
-     </property>
-     <property name="flat">
-      <bool>false</bool>
-     </property>
-    </widget>
-   </item>
-   <item row="2" column="1">
-    <spacer name="horizontalSpacer">
-     <property name="orientation">
-      <enum>Qt::Horizontal</enum>
-     </property>
-     <property name="sizeType">
-      <enum>QSizePolicy::Fixed</enum>
-     </property>
-     <property name="sizeHint" stdset="0">
-      <size>
-       <width>20</width>
-       <height>20</height>
-      </size>
-     </property>
-    </spacer>
-   </item>
-   <item row="4" column="12">
-    <widget class="QSpinBox" name="spinThreshold3">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>140</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="keyboardTracking">
-      <bool>false</bool>
-     </property>
-     <property name="suffix">
-      <string> eV</string>
-     </property>
-     <property name="minimum">
-      <number>-100000</number>
-     </property>
-     <property name="maximum">
-      <number>100000</number>
-     </property>
-     <property name="singleStep">
-      <number>100</number>
-     </property>
-     <property name="value">
-      <number>-1</number>
-     </property>
-    </widget>
-   </item>
-   <item row="7" column="2">
-    <spacer name="verticalSpacer">
-     <property name="orientation">
-      <enum>Qt::Vertical</enum>
-     </property>
-     <property name="sizeType">
-      <enum>QSizePolicy::Fixed</enum>
-     </property>
-     <property name="sizeHint" stdset="0">
-      <size>
-       <width>20</width>
-       <height>190</height>
-      </size>
-     </property>
-    </spacer>
-   </item>
-   <item row="4" column="2" colspan="9">
-    <widget class="QSpinBox" name="spinThreshold">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>140</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="keyboardTracking">
-      <bool>false</bool>
-     </property>
-     <property name="suffix">
-      <string> eV</string>
-     </property>
-     <property name="minimum">
-      <number>-100000</number>
-     </property>
-     <property name="maximum">
-      <number>100000</number>
-     </property>
-     <property name="singleStep">
-      <number>100</number>
-     </property>
-     <property name="value">
-      <number>-1</number>
-     </property>
-    </widget>
-   </item>
-   <item row="6" column="0">
-    <widget class="QLabel" name="lblCounter">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>110</width>
-       <height>0</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>110</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="text">
-      <string>Counters:</string>
-     </property>
-    </widget>
-   </item>
-   <item row="5" column="0">
-    <widget class="QLabel" name="lblDynamicRange">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>110</width>
-       <height>0</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>110</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="text">
-      <string>Dynamic Range:</string>
-     </property>
-    </widget>
-   </item>
-   <item row="3" column="0">
     <widget class="QLabel" name="lblGainMode">
      <property name="enabled">
       <bool>false</bool>
@@ -623,70 +611,7 @@
      </property>
     </widget>
    </item>
-   <item row="5" column="2" colspan="9">
+   <item row="1" column="2">
-    <widget class="QComboBox" name="comboDynamicRange">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>28</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>140</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <item>
-      <property name="text">
-       <string>1.67772e+07</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>65535</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>4095</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>255</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>7</string>
-      </property>
-     </item>
-    </widget>
-   </item>
-   <item row="6" column="3">
-    <widget class="QCheckBox" name="chkCounter2">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>50</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="text">
-      <string>2</string>
-     </property>
-     <property name="checked">
-      <bool>true</bool>
-     </property>
-    </widget>
-   </item>
-   <item row="3" column="2" colspan="9">
     <widget class="QComboBox" name="comboGainMode">
      <property name="enabled">
       <bool>false</bool>
@@ -700,7 +625,7 @@
      <property name="minimumSize">
       <size>
        <width>140</width>
-       <height>28</height>
+       <height>25</height>
       </size>
      </property>
      <property name="maximumSize">
@@ -744,50 +669,6 @@
      </item>
     </widget>
    </item>
-   <item row="1" column="0">
-    <widget class="QLabel" name="lblSpinHV">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage. Range: 60 - 200V. Swich off high voltage by setting to 0.&lt;/p&gt;&lt;p&gt;-1 corresponds to different values from detectors.&lt;/p&gt;&lt;p&gt;#highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <property name="text">
-      <string>High Voltage: </string>
-     </property>
-    </widget>
-   </item>
-   <item row="1" column="2" colspan="5">
-    <widget class="QSpinBox" name="spinHV">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>28</height>
-      </size>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage. Range: 60 - 200V. Swich off high voltage by setting to 0.&lt;/p&gt;&lt;p&gt;-1 corresponds to different values from detectors.&lt;/p&gt;&lt;p&gt;#highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <property name="keyboardTracking">
-      <bool>false</bool>
-     </property>
-     <property name="minimum">
-      <number>-1</number>
-     </property>
-     <property name="maximum">
-      <number>200</number>
-     </property>
-    </widget>
-   </item>
   </layout>
  </widget>
  <tabstops>

slsDetectorGui/include/qCloneWidget.h

@@ -5,8 +5,6 @@
 #include <QMainWindow>
 #include <QString>
 
-namespace sls {
-
 class SlsQtH1D;
 class SlsQt1DPlot;
 class SlsQt2DPlot;
@@ -45,5 +43,3 @@ class qCloneWidget : public QMainWindow, private Ui::ClonePlotObject {
 
     static int NumClones;
 };
-
-} // namespace sls

slsDetectorGui/include/qDacWidget.h

@@ -6,13 +6,11 @@
 #include "ui_form_dac.h"
 #include <string>
 
-namespace sls {
-
 class qDacWidget : public QWidget, private Ui::WidgetDacObject {
     Q_OBJECT
 
   public:
-    qDacWidget(QWidget *parent, Detector *detector, bool d, std::string n,
+    qDacWidget(QWidget *parent, sls::Detector *detector, bool d, std::string n,
                slsDetectorDefs::dacIndex i);
     ~qDacWidget();
     void SetDetectorIndex(int id);
@@ -27,10 +25,8 @@ class qDacWidget : public QWidget, private Ui::WidgetDacObject {
     void GetAdc();
     void Refresh();
 
-    Detector *det;
+    sls::Detector *det;
     bool isDac{true};
     slsDetectorDefs::dacIndex index;
     int detectorIndex{-1};
 };
-
-} // namespace sls

slsDetectorGui/include/qDefs.h

@@ -14,8 +14,6 @@
 #include <ostream>
 #include <string>
 
-namespace sls {
-
 using std::chrono::duration;
 using std::chrono::duration_cast;
 using std::chrono::hours;
@@ -49,9 +47,9 @@ class qDefs : public QWidget {
     static void DisplayExceptions(std::string emsg, std::string src) {
         try {
             throw;
-        } catch (const SocketError &e) {
+        } catch (const sls::SocketError &e) {
             throw;
-        } catch (const SharedMemoryError &e) {
+        } catch (const sls::SharedMemoryError &e) {
             throw;
         } catch (const std::exception &e) {
             ExceptionMessage(emsg, e.what(), src);
@@ -65,9 +63,9 @@ class qDefs : public QWidget {
                                  typename NonDeduced<CT>::type... Args) {
         try {
             throw;
-        } catch (const SocketError &e) {
+        } catch (const sls::SocketError &e) {
             throw;
-        } catch (const SharedMemoryError &e) {
+        } catch (const sls::SharedMemoryError &e) {
             throw;
         } catch (const std::exception &e) {
             ExceptionMessage(emsg, e.what(), src);
@@ -331,5 +329,3 @@ class qDefs : public QWidget {
                        source);
     }
 };
-
-} // namespace sls

slsDetectorGui/include/qDetectorMain.h

@@ -6,11 +6,6 @@
 #include "ui_form_detectormain.h"
 #include <QTabWidget>
 
-class QScrollArea;
-class QResizeEvent;
-
-namespace sls {
-
 class qDrawPlot;
 class qTabMeasurement;
 class qTabDataOutput;
@@ -20,6 +15,8 @@ class qTabSettings;
 class qTabDebugging;
 class qTabDeveloper;
 class qTabMessages;
+class QScrollArea;
+class QResizeEvent;
 
 /** To Over-ride the QTabWidget class to get the tabBar protected
  * methodTabWidget */
@@ -73,7 +70,7 @@ class qDetectorMain : public QMainWindow, private Ui::DetectorMainObject {
         NumberOfTabs
     };
     slsDetectorDefs::detectorType detType;
-    std::unique_ptr<Detector> det;
+    std::unique_ptr<sls::Detector> det;
     qDrawPlot *plot;
     MyTabWidget *tabs;
     QScrollArea *scroll[NumberOfTabs];
@@ -91,5 +88,3 @@ class qDetectorMain : public QMainWindow, private Ui::DetectorMainObject {
     QString zoomToolTip;
     QColor defaultTabColor;
 };
-
-} // namespace sls

slsDetectorGui/include/qDrawPlot.h

@@ -6,21 +6,18 @@
 #include "ui_form_plot.h"
 #include <mutex>
 
-class QResizeEvent;
-
-namespace sls {
-
 class SlsQt1DPlot;
 class SlsQtH1D;
 class SlsQt2DPlot;
 class qCloneWidget;
 class detectorData;
+class QResizeEvent;
 
 class qDrawPlot : public QWidget, private Ui::PlotObject {
     Q_OBJECT
 
   public:
-    qDrawPlot(QWidget *parent, Detector *detector);
+    qDrawPlot(QWidget *parent, sls::Detector *detector);
     ~qDrawPlot();
     bool GetIsRunning();
     void SetRunning(bool enable);
@@ -58,7 +55,6 @@ class qDrawPlot : public QWidget, private Ui::PlotObject {
     void EnableGainPlot(bool enable);
     void ClonePlot();
     void SavePlot();
-    void SetGapPixels(bool enable);
 
   protected:
     void resizeEvent(QResizeEvent *event);
@@ -95,11 +91,9 @@ class qDrawPlot : public QWidget, private Ui::PlotObject {
     void Update2dPlot();
     void Update1dXYRange();
     void Update2dXYRange();
-    void rearrangeGotthard25data(double *data);
 
     static const int NUM_PEDESTAL_FRAMES = 20;
-    static const int NUM_GOTTHARD25_CHANS = 1280;
+    sls::Detector *det;
-    Detector *det;
     slsDetectorDefs::detectorType detType;
 
     SlsQt1DPlot *plot1d{nullptr};
@@ -164,16 +158,10 @@ class qDrawPlot : public QWidget, private Ui::PlotObject {
     int64_t currentFrame{0};
     mutable std::mutex mPlots;
     int64_t currentAcqIndex{0};
-    slsDetectorDefs::ROI rxRoi{};
-    bool isRxRoiDisplayed{false};
-    bool isGapPixels{false};
 
     unsigned int nPixelsX{0};
     unsigned int nPixelsY{0};
     uint32_t pixelMask{0};
     uint32_t gainMask{0};
     int gainOffset{0};
-    bool gotthard25;
 };
-
-} // namespace sls

slsDetectorGui/include/qTabAdvanced.h

@@ -4,15 +4,13 @@
 #include "sls/Detector.h"
 #include "ui_form_tab_advanced.h"
 
-namespace sls {
-
 class qDrawPlot;
 
 class qTabAdvanced : public QWidget, private Ui::TabAdvancedObject {
     Q_OBJECT
 
   public:
-    qTabAdvanced(QWidget *parent, Detector *detector, qDrawPlot *p);
+    qTabAdvanced(QWidget *parent, sls::Detector *detector, qDrawPlot *p);
     ~qTabAdvanced();
 
   public slots:
@@ -76,8 +74,6 @@ class qTabAdvanced : public QWidget, private Ui::TabAdvancedObject {
     void GetExposureTime();
     void GetGateDelay();
 
-    Detector *det;
+    sls::Detector *det;
     qDrawPlot *plot;
 };
-
-} // namespace sls

slsDetectorGui/include/qTabDataOutput.h

@@ -4,13 +4,11 @@
 #include "sls/Detector.h"
 #include "ui_form_tab_dataoutput.h"
 
-namespace sls {
-
 class qTabDataOutput : public QWidget, private Ui::TabDataOutputObject {
     Q_OBJECT
 
   public:
-    qTabDataOutput(QWidget *parent, Detector *detector);
+    qTabDataOutput(QWidget *parent, sls::Detector *detector);
     ~qTabDataOutput();
     void Refresh();
 
@@ -41,9 +39,7 @@ class qTabDataOutput : public QWidget, private Ui::TabDataOutputObject {
     void GetSpeed();
     void GetParallel();
 
-    Detector *det;
+    sls::Detector *det;
     // Button group for radiobuttons for rate
     QButtonGroup *btnGroupRate;
 };
-
-} // namespace sls

slsDetectorGui/include/qTabDebugging.h

@@ -7,13 +7,11 @@
 class QTreeWidget;
 class QTreeWidgetItem;
 
-namespace sls {
-
 class qTabDebugging : public QWidget, private Ui::TabDebuggingObject {
     Q_OBJECT
 
   public:
-    qTabDebugging(QWidget *parent, Detector *detector);
+    qTabDebugging(QWidget *parent, sls::Detector *detector);
     ~qTabDebugging();
     void Refresh();
 
@@ -28,12 +26,10 @@ class qTabDebugging : public QWidget, private Ui::TabDebuggingObject {
     void Initialization();
     void PopulateDetectors();
 
-    Detector *det;
+    sls::Detector *det;
     /** Tree Widget displaying the detectors, modules */
     QTreeWidget *treeDet;
     QLabel *lblDetectorHostname;
     QLabel *lblDetectorFirmware;
     QLabel *lblDetectorSoftware;
 };
-
-} // namespace sls

slsDetectorGui/include/qTabDeveloper.h

@@ -6,30 +6,35 @@
 #include "ui_form_tab_developer.h"
 #include <vector>
 
-namespace sls {
-
 class qDacWidget;
 
 class qTabDeveloper : public QWidget, private Ui::TabDeveloperObject {
     Q_OBJECT
 
   public:
-    qTabDeveloper(QWidget *parent, Detector *detector);
+    qTabDeveloper(QWidget *parent, sls::Detector *detector);
     ~qTabDeveloper();
 
   public slots:
     void Refresh();
 
+  private slots:
+    void SetHighVoltage();
+
   private:
     void SetupWidgetWindow();
     void Initialization();
     void PopulateDetectors();
+    void GetHighVoltage();
     slsDetectorDefs::dacIndex getSLSIndex(slsDetectorDefs::detectorType detType,
                                           int index);
 
-    Detector *det;
+    sls::Detector *det;
     std::vector<qDacWidget *> dacWidgets;
     std::vector<qDacWidget *> adcWidgets;
-};
 
-} // namespace sls
+    enum hvVals { HV_0, HV_90, HV_110, HV_120, HV_150, HV_180, HV_200 };
+    int hvmin;
+    static const int HV_MIN = 60;
+    static const int HV_MAX = 200;
+};

slsDetectorGui/include/qTabMeasurement.h

@@ -4,17 +4,14 @@
 #include "sls/Detector.h"
 #include "ui_form_tab_measurement.h"
 
-class QStandardItemModel;
-
-namespace sls {
-
 class qDrawPlot;
+class QStandardItemModel;
 
 class qTabMeasurement : public QWidget, private Ui::TabMeasurementObject {
     Q_OBJECT
 
   public:
-    qTabMeasurement(QWidget *parent, Detector *detector, qDrawPlot *p);
+    qTabMeasurement(QWidget *parent, sls::Detector *detector, qDrawPlot *p);
     ~qTabMeasurement();
 
     void Refresh();
@@ -84,7 +81,7 @@ class qTabMeasurement : public QWidget, private Ui::TabMeasurementObject {
     void FileNameChangedSignal(QString);
 
   private:
-    Detector *det;
+    sls::Detector *det;
     qDrawPlot *plot;
     // enum for the timing mode
     enum { AUTO, TRIGGER, GATED, BURST_TRIGGER, TRIGGER_GATED, NUMTIMINGMODES };
@@ -101,5 +98,3 @@ class qTabMeasurement : public QWidget, private Ui::TabMeasurementObject {
     int numMeasurements{1};
     int currentMeasurement{0};
 };
-
-} // namespace sls

slsDetectorGui/include/qTabMessages.h

@@ -6,8 +6,6 @@
 class QProcess;
 class QKeyEvent;
 
-namespace sls {
-
 class qTabMessages : public QWidget, private Ui::TabMessagesObject {
     Q_OBJECT
 
@@ -36,5 +34,3 @@ class qTabMessages : public QWidget, private Ui::TabMessagesObject {
     QProcess *process;
     QStringList lastCommand;
 };
-
-} // namespace sls

slsDetectorGui/include/qTabPlot.h

@@ -4,15 +4,13 @@
 #include "sls/Detector.h"
 #include "ui_form_tab_plot.h"
 
-namespace sls {
-
 class qDrawPlot;
 
 class qTabPlot : public QWidget, private Ui::TabPlotObject {
     Q_OBJECT
 
   public:
-    qTabPlot(QWidget *parent, Detector *detector, qDrawPlot *p);
+    qTabPlot(QWidget *parent, sls::Detector *detector, qDrawPlot *p);
     ~qTabPlot();
     void SetScanArgument();
     void Refresh();
@@ -55,7 +53,7 @@ class qTabPlot : public QWidget, private Ui::TabPlotObject {
     void SetXYRange();
     void MaintainAspectRatio(int dimension);
 
-    Detector *det;
+    sls::Detector *det;
     qDrawPlot *plot;
     bool is1d;
 
@@ -67,5 +65,3 @@ class qTabPlot : public QWidget, private Ui::TabPlotObject {
     static QString defaultImageYAxisTitle;
     static QString defaultImageZAxisTitle;
 };
-
-} // namespace sls

slsDetectorGui/include/qTabSettings.h

@@ -5,20 +5,17 @@
 #include "ui_form_tab_settings.h"
 #include <QCheckBox>
 
-namespace sls {
-
 class qTabSettings : public QWidget, private Ui::TabSettingsObject {
     Q_OBJECT
 
   public:
-    qTabSettings(QWidget *parent, Detector *detector);
+    qTabSettings(QWidget *parent, sls::Detector *detector);
     ~qTabSettings();
     void Refresh();
   public slots:
     void SetExportMode(bool exportMode);
 
   private slots:
-    void SetHighVoltage();
     void SetSettings(int index);
     void SetGainMode(int index);
     void SetDynamicRange(int index);
@@ -33,7 +30,6 @@ class qTabSettings : public QWidget, private Ui::TabSettingsObject {
     void ShowFixG0(bool expertMode);
     void Initialization();
 
-    void GetHighVoltage();
     void GetSettings();
     void GetGainMode();
     void GetDynamicRange();
@@ -41,15 +37,9 @@ class qTabSettings : public QWidget, private Ui::TabSettingsObject {
     void GetThresholdEnergies();
     void GetCounterMask();
 
-    Detector *det;
+    sls::Detector *det;
     std::vector<QCheckBox *> counters;
 
-    enum hvVals { HV_0, HV_90, HV_110, HV_120, HV_150, HV_180, HV_200 };
-
-    int hvmin;
-    static const int HV_MIN = 60;
-    static const int HV_MAX = 200;
-
     enum {
         STANDARD,
         FAST,
@@ -79,13 +69,5 @@ class qTabSettings : public QWidget, private Ui::TabSettingsObject {
     enum { DYNAMIC, FORCE_SWITCH_G1, FORCE_SWITCH_G2, FIX_G1, FIX_G2, FIX_G0 };
     bool isVisibleFixG0{false};
 
-    enum {
+    enum { DYNAMICRANGE_32, DYNAMICRANGE_16, DYNAMICRANGE_8, DYNAMICRANGE_4 };
-        DYNAMICRANGE_32,
-        DYNAMICRANGE_16,
-        DYNAMICRANGE_12,
-        DYNAMICRANGE_8,
-        DYNAMICRANGE_4
-    };
 };
-
-} // namespace sls

slsDetectorGui/slsDetectorPlotting/include/SlsQt1DPlot.h

@@ -9,14 +9,10 @@
 #include <qwt_plot_curve.h>
 #include <qwt_plot_marker.h>
 #include <qwt_scale_div.h>
-#include <qwt_plot_shapeitem.h>
 
 class QPen;
-class QwtSymbol;
-
-namespace sls {
-
 class SlsQt1DPlot;
+class QwtSymbol;
 
 class SlsQtH1D : public QwtPlotCurve {
 
@@ -140,9 +136,6 @@ class SlsQt1DPlot : public QwtPlot {
     void SetLogX(bool yes = 1);
     void SetLogY(bool yes = 1);
 
-    void EnableRoiBox(std::array<int, 4> roi);  
-    void DisableRoiBox();
-
   private:
     SlsQtH1DList *hist_list{nullptr};
     SlsQt1DZoomer *zoomer{nullptr};
@@ -166,15 +159,9 @@ class SlsQt1DPlot : public QwtPlot {
     friend void SlsQtH1D::Attach(SlsQt1DPlot *p);
     friend void SlsQtH1D::Detach(SlsQt1DPlot *p);
 
-    QwtPlotShapeItem *roiBox{nullptr};
-
   public slots:
     void UnZoom();
     void Update();
 };
 
-} // namespace sls
-
 #endif
-
-

slsDetectorGui/slsDetectorPlotting/include/SlsQt1DZoomer.h

@@ -8,8 +8,6 @@
 #include <qwt_plot_panner.h>
 #include <qwt_plot_zoomer.h>
 
-namespace sls {
-
 class SlsQtH1D;
 
 class SlsQt1DZoomer : public QwtPlotZoomer {
@@ -53,6 +51,4 @@ class SlsQt1DZoomer : public QwtPlotZoomer {
     }
 };
 
-} // namespace sls
-
 #endif

slsDetectorGui/slsDetectorPlotting/include/SlsQt2DHist.h

@@ -9,8 +9,6 @@
 #include <qwt_scale_draw.h>
 #include <qwt_scale_widget.h>
 
-namespace sls {
-
 class SlsQt2DHist : public QwtRasterData {
 
   private:
@@ -127,6 +125,4 @@ class SlsQt2DHist : public QwtRasterData {
     }
 };
 
-} // namespace sls
-
 #endif

slsDetectorGui/slsDetectorPlotting/include/SlsQt2DPlot.h

@@ -6,14 +6,11 @@
 #include <qlist.h>
 #include <qwt_plot.h>
 #include <qwt_plot_spectrogram.h>
-#include <qwt_plot_shapeitem.h>
 
 class QwtPlotPanner;
 class QwtScaleWidget;
 class QwtLinearColorMap;
 
-namespace sls {
-
 class SlsQt2DPlot : public QwtPlot {
     Q_OBJECT
 
@@ -70,8 +67,6 @@ class SlsQt2DPlot : public QwtPlot {
     void SetLogz(bool enable, bool isMin, bool isMax, double min, double max);
     void SetZRange(bool isMin, bool isMax, double min, double max);
     void LogZ(bool on = 1);
-    void EnableRoiBox(std::array<int, 4> roi);  
-    void DisableRoiBox();
 
   public slots:
     void showSpectrogram(bool on);
@@ -91,7 +86,4 @@ class SlsQt2DPlot : public QwtPlot {
     QList<double> contourLevelsLog;
     bool disableZoom{false};
     int isLog;
-    QwtPlotShapeItem *roiBox{nullptr};
 };
-
-} // namespace sls

slsDetectorGui/slsDetectorPlotting/include/SlsQt2DZoomer.h

@@ -7,8 +7,6 @@
 #include <qwt_plot_panner.h>
 #include <qwt_plot_zoomer.h>
 
-namespace sls {
-
 class SlsQt2DZoomer : public QwtPlotZoomer {
   private:
     SlsQt2DHist *hist;
@@ -42,6 +40,4 @@ class SlsQt2DZoomer : public QwtPlotZoomer {
     }
 };
 
-} // namespace sls
-
 #endif

slsDetectorGui/slsDetectorPlotting/src/SlsQt1DPlot.cpp

@@ -15,8 +15,6 @@
 #include <qwt_symbol.h>
 #include <stdlib.h>
 
-namespace sls {
-
 #define QwtLog10ScaleEngine QwtLogScaleEngine // hmm
 
 SlsQtH1D::SlsQtH1D(QString title, int n, double min, double max, double *data)
@@ -444,28 +442,6 @@ void SlsQt1DPlot::SetLog(int axisId, bool yes) {
     Update();
 }
 
-
-void SlsQt1DPlot::EnableRoiBox(std::array<int, 4> roi) {
-    if (roiBox == nullptr) {
-        roiBox = new QwtPlotShapeItem();
-        roiBox->attach(this);
-        roiBox->setPen(QColor(Qt::yellow), 2.0, Qt::SolidLine);
-    } 
-
-    // TopLeft - BottomRight (max points are +1 on graph)
-    QRect myRect(QPoint(roi[0], roi[2]), QPoint(roi[1] - 1, roi[3] - 1));
-    roiBox->setRect( QRectF(myRect) );
-    replot();
-}
-
-void SlsQt1DPlot::DisableRoiBox() {
-    if (roiBox != nullptr) {
-        roiBox->detach();
-        replot();
-    }
-}
-
-
 void SlsQt1DPlot::UnZoom() {
     setAxisScale(QwtPlot::xBottom, zoomer->x(), zoomer->x() + zoomer->w());
     setAxisScale(QwtPlot::yLeft, zoomer->y(), zoomer->y() + zoomer->h());
@@ -604,5 +580,3 @@ void SlsQt1DPlot::DisableZoom(bool disable) {
         }
     }
 }
-
-} // namespace sls

slsDetectorGui/slsDetectorPlotting/src/SlsQt1DZoomer.cpp

@@ -7,8 +7,6 @@
 #include <qwt_plot.h>
 #include <qwt_scale_div.h>
 
-namespace sls {
-
 void SlsQt1DZoomer::ResetZoomBase() {
     SetZoomBase(x0, y0, x1 - x0,
                 y1 - y0); // for going between log and nonlog plots
@@ -95,5 +93,3 @@ void SlsQt1DZoomer::ExtendZoomBase(SlsQtH1D *h) {
 
     ResetZoomBase();
 }
-
-} // namespace sls

slsDetectorGui/slsDetectorPlotting/src/SlsQt2DHist.cpp

@@ -9,8 +9,6 @@
 using std::cout;
 using std::endl;
 
-namespace sls {
-
 SlsQt2DHist::SlsQt2DHist(int nbinsx, double xmin, double xmax, int nbinsy,
                          double ymin, double ymax, double *d, double zmin,
                          double zmax)
@@ -145,5 +143,3 @@ double SlsQt2DHist::SetMinimumToFirstGreaterThanZero() {
 
     return z_min;
 }
-
-} // namespace sls

slsDetectorGui/slsDetectorPlotting/src/SlsQt2DPlot.cpp

@@ -18,8 +18,6 @@
 #include <cmath>
 #include <iostream>
 
-namespace sls {
-
 SlsQt2DPlot::SlsQt2DPlot(QWidget *parent) : QwtPlot(parent) {
     isLog = 0;
     axisScaleEngine(QwtPlot::yLeft)->setAttribute(QwtScaleEngine::Floating);
@@ -291,27 +289,4 @@ void SlsQt2DPlot::showSpectrogram(bool on) {
     d_spectrogram->setDisplayMode(QwtPlotSpectrogram::ImageMode, on);
     d_spectrogram->setDefaultContourPen(on ? QPen() : QPen(Qt::NoPen));
     Update();
-}
+}
-
-void SlsQt2DPlot::EnableRoiBox(std::array<int, 4> roi) {
-    if (roiBox == nullptr) {
-        roiBox = new QwtPlotShapeItem();
-    }
-    roiBox->setPen(QColor(Qt::yellow), 2.0, Qt::SolidLine);
-
-    // TopLeft - BottomRight (max points are +1 on graph)
-    QRect myRect(QPoint(roi[0], roi[2]), QPoint(roi[1] - 1, roi[3] - 1));
-    roiBox->setRect( QRectF(myRect) );
-
-    roiBox->attach(this);
-    replot();
-}
-
-void SlsQt2DPlot::DisableRoiBox() {
-    if (roiBox != nullptr) {
-        roiBox->detach();
-        replot();
-    }
-}
-
-} // namespace sls

slsDetectorGui/src/qCloneWidget.cpp

@@ -11,8 +11,6 @@
 #include <QPainter>
 #include <qwt_text.h>
 
-namespace sls {
-
 int qCloneWidget::NumClones{0};
 
 qCloneWidget::qCloneWidget(QWidget *parent, SlsQt1DPlot *p1, SlsQt2DPlot *p2,
@@ -46,7 +44,7 @@ qCloneWidget::~qCloneWidget() {
 void qCloneWidget::SetupWidgetWindow(QString title) {
 
     std::string winTitle = std::string("Snapshot:") + std::to_string(id) +
-                           std::string("  -  ") + Logger::Timestamp();
+                           std::string("  -  ") + sls::Logger::Timestamp();
     setWindowTitle(QString(winTitle.c_str()));
 
     boxPlot->setFont(QFont("Sans Serif", qDefs::Q_FONT_SIZE, QFont::Normal));
@@ -148,6 +146,4 @@ void qCloneWidget::resizeEvent(QResizeEvent *event) {
                                    qDefs::DATA_GAIN_PLOT_RATIO);
     }
     event->accept();
-}
+}
-
-} // namespace sls

slsDetectorGui/src/qDacWidget.cpp

@@ -3,9 +3,7 @@
 #include "qDacWidget.h"
 #include "qDefs.h"
 
-namespace sls {
+qDacWidget::qDacWidget(QWidget *parent, sls::Detector *detector, bool d,
-
-qDacWidget::qDacWidget(QWidget *parent, Detector *detector, bool d,
                        std::string n, slsDetectorDefs::dacIndex i)
     : QWidget(parent), det(detector), isDac(d), index(i) {
     setupUi(this);
@@ -96,5 +94,3 @@ void qDacWidget::Refresh() {
         GetAdc();
     }
 }
-
-} // namespace sls

slsDetectorGui/src/qDetectorMain.cpp

@@ -59,7 +59,7 @@ int main(int argc, char **argv) {
 
         case 'f':
             fname = optarg;
-            LOG(sls::logDEBUG) << long_options[option_index].name << " " << optarg;
+            LOG(logDEBUG) << long_options[option_index].name << " " << optarg;
             break;
 
         case 'd':
@@ -72,7 +72,7 @@ int main(int argc, char **argv) {
 
         case 'v':
             tempval = APIGUI;
-            LOG(sls::logINFO) << "SLS Detector GUI " << GITBRANCH << " (0x"
+            LOG(logINFO) << "SLS Detector GUI " << GITBRANCH << " (0x"
                          << std::hex << tempval << ")";
             return 0;
 
@@ -88,7 +88,7 @@ int main(int argc, char **argv) {
                 "i. Default: 0. Required \n" +
                 "\t                            only when more than one multi "
                 "detector object is needed.\n\n";
-            LOG(sls::logERROR) << help_message;
+            LOG(logERROR) << help_message;
             return -1;
         }
     }
@@ -96,18 +96,16 @@ int main(int argc, char **argv) {
     QApplication app(argc, argv);
     app.setStyle(new QPlastiqueStyle); // style is deleted by QApplication
     try {
-        sls::qDetectorMain det(multiId, fname, isDeveloper);
+        qDetectorMain det(multiId, fname, isDeveloper);
         det.show();
         app.exec();
     } catch (const std::exception &e) {
-        sls::qDefs::Message(sls::qDefs::CRITICAL,
+        qDefs::Message(qDefs::CRITICAL,
                        std::string(e.what()) + "\nExiting Gui :'( ", "main");
     }
     return 0;
 }
 
-namespace sls {
-
 qDetectorMain::qDetectorMain(int multiId, const std::string &fname,
                              bool isDevel)
     : QMainWindow(nullptr), detType(slsDetectorDefs::GENERIC),
@@ -197,7 +195,6 @@ void qDetectorMain::SetUpWidgetWindow() {
     tabs->setTabEnabled(ADVANCED, false);
     tabs->setTabEnabled(DEVELOPER, isDeveloper);
     actionLoadTrimbits->setVisible(false);
-    actionSaveTrimbits->setVisible(false);
 
     dockWidgetPlot->setFloating(false);
     dockWidgetPlot->setFeatures(QDockWidget::NoDockWidgetFeatures);
@@ -215,7 +212,7 @@ void qDetectorMain::SetUpWidgetWindow() {
 void qDetectorMain::SetUpDetector(const std::string &config_file, int multiID) {
 
     // instantiate detector and set window title
-    det = make_unique<Detector>(multiID);
+    det = sls::make_unique<sls::Detector>(multiID);
 
     // create messages tab to capture config file loading logs
     tabMessages = new qTabMessages(this);
@@ -228,12 +225,10 @@ void qDetectorMain::SetUpDetector(const std::string &config_file, int multiID) {
     detType = det->getDetectorType().tsquash(
         "Different detector type for all modules.");
     actionLoadTrimbits->setEnabled(false);
-    actionSaveTrimbits->setEnabled(false);
     switch (detType) {
     case slsDetectorDefs::EIGER:
     case slsDetectorDefs::MYTHEN3:
         actionLoadTrimbits->setEnabled(true);
-        actionSaveTrimbits->setEnabled(true);
         break;
     case slsDetectorDefs::GOTTHARD:
     case slsDetectorDefs::JUNGFRAU:
@@ -243,15 +238,15 @@ void qDetectorMain::SetUpDetector(const std::string &config_file, int multiID) {
     default:
         std::ostringstream os;
         os << det->getHostname() << " has "
-           << ToString(det->getDetectorType().squash())
+           << sls::ToString(det->getDetectorType().squash())
            << " detector type (" << std::to_string(detType)
            << "). Exiting GUI.";
         std::string errorMess = os.str();
-        throw RuntimeError(errorMess.c_str());
+        throw sls::RuntimeError(errorMess.c_str());
     }
     std::ostringstream os;
     os << "SLS Detector GUI : "
-       << ToString(det->getDetectorType().squash()) << " - "
+       << sls::ToString(det->getDetectorType().squash()) << " - "
        << det->getHostname();
     std::string title = os.str();
     LOG(logINFO) << title;
@@ -344,9 +339,9 @@ void qDetectorMain::EnableModes(QAction *action) {
         enable = actionExpert->isChecked();
 
         tabs->setTabEnabled(ADVANCED, enable);
-        bool visible = enable && (detType == slsDetectorDefs::EIGER || detType == slsDetectorDefs::MYTHEN3);
+        actionLoadTrimbits->setVisible(enable &&
-        actionLoadTrimbits->setVisible(visible);
+                                       (detType == slsDetectorDefs::EIGER ||
-        actionSaveTrimbits->setVisible(visible);
+                                        detType == slsDetectorDefs::MYTHEN3));
         tabSettings->SetExportMode(enable);
         LOG(logINFO) << "Expert Mode: " << qDefs::stringEnable(enable);
     }
@@ -422,22 +417,6 @@ void qDetectorMain::ExecuteUtilities(QAction *action) {
                 LOG(logINFO) << "Trimbits loaded successfully";
             }
         }
-
-        else if (action == actionSaveTrimbits) {
-            QString fPath =
-                QString((det->getSettingsPath().squash("/tmp/")).c_str());
-            LOG(logDEBUG) << "Saving Trimbits";
-            QString fName = QFileDialog::getSaveFileName(
-                this, tr("Save Detector Trimbits"), fPath,
-                tr("Trimbit files (*.trim noise.sn*);;All Files(*)"));
-            if (!fName.isEmpty()) {
-                det->saveTrimbits(std::string(fName.toAscii().constData()));
-                qDefs::Message(qDefs::INFORMATION,
-                               "The Trimbits have been saved successfully.",
-                               "qDetectorMain::ExecuteUtilities");
-                LOG(logINFO) << "Trimbits saved successfully";
-            }
-        }
     }
     CATCH_DISPLAY("Could not execute utilities.",
                   "qDetectorMain::ExecuteUtilities")
@@ -462,10 +441,10 @@ void qDetectorMain::ExecuteHelp(QAction *action) {
         LOG(logINFO) << "About Common GUI for Jungfrau, Eiger, Mythen3, "
                         "Gotthard, Gotthard2 and Moench detectors";
 
-        std::string guiVersion = ToStringHex(APIGUI);
+        std::string guiVersion = sls::ToStringHex(APIGUI);
         std::string clientVersion = "unknown";
         try {
-            clientVersion = ToStringHex(det->getClientVersion());
+            clientVersion = sls::ToStringHex(det->getClientVersion());
         }
         CATCH_DISPLAY("Could not get client version.",
                       "qDetectorMain::ExecuteHelp")
@@ -598,8 +577,6 @@ void qDetectorMain::EnableTabs(bool enable) {
     tabs->setTabEnabled(ADVANCED, expertTab);
     actionLoadTrimbits->setVisible(expertTab &&
                                    detType == slsDetectorDefs::EIGER);
-    actionSaveTrimbits->setVisible(expertTab &&
-                                   detType == slsDetectorDefs::EIGER);
 
     // moved to here, so that its all in order, instead of signals and different
     // threads
@@ -632,5 +609,3 @@ void qDetectorMain::SetZoomToolTip(bool disable) {
     else
         dockWidgetPlot->setToolTip(zoomToolTip);
 }
-
-} // namespace sls

slsDetectorGui/src/qDrawPlot.cpp

@@ -14,9 +14,7 @@
 #include <QResizeEvent>
 #include <QtConcurrentRun>
 
-namespace sls {
+qDrawPlot::qDrawPlot(QWidget *parent, sls::Detector *detector)
-
-qDrawPlot::qDrawPlot(QWidget *parent, Detector *detector)
     : QWidget(parent), det(detector) {
     setupUi(this);
     SetupWidgetWindow();
@@ -82,10 +80,6 @@ void qDrawPlot::SetupWidgetWindow() {
         fileSaveName = "Image";
     }
 
-    gotthard25 = ((detType == slsDetectorDefs::GOTTHARD2 ||
-                   detType == slsDetectorDefs::GOTTHARD) &&
-                  det->size() == 2);
-
     SetupPlots();
     SetDataCallBack(true);
     det->registerAcquisitionFinishedCallback(&(GetAcquisitionFinishedCallBack),
@@ -280,13 +274,11 @@ void qDrawPlot::Select1dPlot(bool enable) {
 }
 
 void qDrawPlot::SetPlotTitlePrefix(QString title) {
-    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting Title to " << title.toAscii().constData();
     plotTitlePrefix = title;
 }
 
 void qDrawPlot::SetXAxisTitle(QString title) {
-    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting X Axis Title to " << title.toAscii().constData();
     if (is1d) {
         xTitle1d = title;
@@ -296,7 +288,6 @@ void qDrawPlot::SetXAxisTitle(QString title) {
 }
 
 void qDrawPlot::SetYAxisTitle(QString title) {
-    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting Y Axis Title to " << title.toAscii().constData();
     if (is1d) {
         yTitle1d = title;
@@ -306,7 +297,6 @@ void qDrawPlot::SetYAxisTitle(QString title) {
 }
 
 void qDrawPlot::SetZAxisTitle(QString title) {
-    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting Z Axis Title to " << title.toAscii().constData();
     zTitle2d = title;
 }
@@ -324,7 +314,6 @@ void qDrawPlot::SetXYRangeChanged(bool disable, double *xy, bool *isXY) {
 }
 
 void qDrawPlot::SetZRange(double *z, bool *isZ) {
-    std::lock_guard<std::mutex> lock(mPlots);
     std::copy(z, z + 2, zRange);
     std::copy(isZ, isZ + 2, isZRange);
 }
@@ -358,7 +347,6 @@ double qDrawPlot::GetYMaximum() {
 }
 
 void qDrawPlot::SetDataCallBack(bool enable) {
-    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting data call back to " << std::boolalpha << enable
                  << std::noboolalpha;
     try {
@@ -377,7 +365,6 @@ void qDrawPlot::SetDataCallBack(bool enable) {
 }
 
 void qDrawPlot::SetBinary(bool enable, int from, int to) {
-    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << (enable ? "Enabling" : "Disabling")
                  << " Binary output from " << from << " to " << to;
     binaryFrom = from;
@@ -386,7 +373,6 @@ void qDrawPlot::SetBinary(bool enable, int from, int to) {
 }
 
 void qDrawPlot::SetPersistency(int val) {
-    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting Persistency to " << val;
     persistency = val;
 }
@@ -468,20 +454,17 @@ void qDrawPlot::ResetAccumulate() {
 }
 
 void qDrawPlot::DisplayStatistics(bool enable) {
-    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << (enable ? "Enabling" : "Disabling")
                  << " Statistics Display";
     displayStatistics = enable;
 }
 
 void qDrawPlot::SetNumDiscardBits(int value) {
-    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting number of bits to discard: " << value;
     numDiscardBits = value;
 }
 
 void qDrawPlot::EnableGainPlot(bool enable) {
-    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << (enable ? "Enabling" : "Disabling") << " Gain Plot";
     hasGainData = enable;
 }
@@ -622,13 +605,6 @@ void qDrawPlot::SavePlot() {
     }
 }
 
-void qDrawPlot::SetGapPixels(bool enable) {
-    LOG(logDEBUG) << "Gap pixels enabled";
-    std::lock_guard<std::mutex> lock(mPlots);
-    isGapPixels = enable;
-}
-
-
 void qDrawPlot::GetStatistics(double &min, double &max, double &sum) {
     LOG(logDEBUG) << "Calculating Statistics";
     double *array = data2d;
@@ -662,7 +638,6 @@ void qDrawPlot::StartAcquisition() {
     currentFrame = 0;
     boxPlot->setTitle("Old Plot");
     det->clearAcquiringFlag(); // (from previous exit) or if running
-    isRxRoiDisplayed = false;
 
     // ensure data streaming in receiver (if plot enabled)
     if (isPlot) {
@@ -730,7 +705,7 @@ void qDrawPlot::AcquisitionFinished(double currentProgress,
                                     int detectorStatus) {
     progress = currentProgress;
     std::string status =
-        ToString(static_cast<slsDetectorDefs::runStatus>(detectorStatus));
+        sls::ToString(static_cast<slsDetectorDefs::runStatus>(detectorStatus));
 
     if (detectorStatus == slsDetectorDefs::ERROR) {
         qDefs::Message(qDefs::WARNING,
@@ -763,7 +738,6 @@ void qDrawPlot::GetData(detectorData *data, uint64_t frameIndex,
                   << "  \t dynamic range: " << data->dynamicRange << std::endl
                   << "  \t file index: " << data->fileIndex << std::endl
                   << "  \t complete image: " << data->completeImage << std::endl
-                  << "  \t rx Roi: " << ToString(data->rxRoi) << std::endl
                   << "  ]";
 
     progress = data->progressIndex;
@@ -771,22 +745,6 @@ void qDrawPlot::GetData(detectorData *data, uint64_t frameIndex,
     currentFrame = frameIndex;
     LOG(logDEBUG) << "[ Progress:" << progress << "%, Frame:" << currentFrame
                   << " ]";
-    if (!isRxRoiDisplayed) {
-        rxRoi.xmin = data->rxRoi[0];
-        rxRoi.xmax = data->rxRoi[1];
-        rxRoi.ymin = data->rxRoi[2];
-        rxRoi.ymax = data->rxRoi[3];
-        // only for 2d anyway
-        if (isGapPixels) {
-            rxRoi.xmin += ((rxRoi.xmin/1024) * 6 + (rxRoi.xmin/256) * 2);
-            rxRoi.xmax += ((rxRoi.xmax/1024) * 6 + (rxRoi.xmax/256) * 2);
-            rxRoi.ymin += ((rxRoi.ymin/512) * 34 + (rxRoi.ymin/256) * 2);
-            rxRoi.ymax += ((rxRoi.ymax/512) * 34 + (rxRoi.ymax/256) * 2);
-            LOG(logINFO) << "Rx_roi recalculated with gap pixels: " << ToString(rxRoi);
-        }
-        LOG(logDEBUG) << "Rx_roi: " << ToString(rxRoi);
-    }
-    
 
     // 1d check if npixelX has changed (m3 for different counters enabled)
     if (is1d && static_cast<int>(nPixelsX) != data->nx) {
@@ -849,11 +807,6 @@ void qDrawPlot::GetData(detectorData *data, uint64_t frameIndex,
         isGainDataExtracted = false;
     }
 
-    // gotthard25um rearranging
-    if (gotthard25) {
-        rearrangeGotthard25data(rawData);
-    }
-
     // title and frame index titles
     plotTitle =
         plotTitlePrefix + QString(data->fileName.c_str()).section('/', -1);
@@ -1025,26 +978,6 @@ void qDrawPlot::Update1dPlot() {
         xyRangeChanged = false;
     }
     plot1d->DisableZoom(disableZoom);
-    if (!isRxRoiDisplayed) {
-        isRxRoiDisplayed = true;
-        if (rxRoi.completeRoi()) {
-            plot1d->DisableRoiBox();
-            if (isGainDataExtracted) {
-                gainplot1d->DisableRoiBox();
-            }
-            lblRxRoiEnabled->hide();
-        } else {
-            plot1d->EnableRoiBox(std::array<int, 4>{rxRoi.xmin, rxRoi.xmax, (int)plot1d->GetYMinimum(), (int)plot1d->GetYMaximum()});
-            if (isGainDataExtracted) {
-                gainplot1d->EnableRoiBox(std::array<int, 4>{rxRoi.xmin, rxRoi.xmax, 0, 3});
-            }
-            lblRxRoiEnabled->show();
-        }
-    }
-    // ymin and ymax could change (so replot roi every time)
-    if (!rxRoi.completeRoi()) {
-        plot1d->EnableRoiBox(std::array<int, 4>{rxRoi.xmin, rxRoi.xmax, (int)plot1d->GetYMinimum(), (int)plot1d->GetYMaximum()});
-    } 
 }
 
 void qDrawPlot::Update2dPlot() {
@@ -1073,22 +1006,6 @@ void qDrawPlot::Update2dPlot() {
     }
     plot2d->DisableZoom(disableZoom);
     plot2d->SetZRange(isZRange[0], isZRange[1], zRange[0], zRange[1]);
-    if (!isRxRoiDisplayed) {
-        isRxRoiDisplayed = true;
-        if (rxRoi.completeRoi()) {
-            plot2d->DisableRoiBox();
-            if (isGainDataExtracted) {
-                gainplot2d->DisableRoiBox();
-            }
-            lblRxRoiEnabled->hide();
-        } else {
-            plot2d->EnableRoiBox(rxRoi.getIntArray());
-            if (isGainDataExtracted) {
-                gainplot2d->EnableRoiBox(rxRoi.getIntArray());
-            }
-            lblRxRoiEnabled->show();
-        }
-    }
 }
 
 void qDrawPlot::Update1dXYRange() {
@@ -1147,8 +1064,6 @@ void qDrawPlot::toDoublePixelData(double *dest, char *source, int size,
     // mythen3 / gotthard2 debugging
     int discardBits = numDiscardBits;
 
-    uint16_t temp = 0;
-    uint8_t *src = (uint8_t *)source;
     switch (dr) {
 
     case 4:
@@ -1168,19 +1083,6 @@ void qDrawPlot::toDoublePixelData(double *dest, char *source, int size,
         }
         break;
 
-    case 12:
-        for (ichan = 0; ichan < size; ++ichan) {
-            temp = (*src++ & 0xFF);
-            temp |= ((*src & 0xF) << 8u);
-            dest[ichan] = (double)temp;
-            ++ichan;
-
-            temp = ((*src++ & 0xF0) >> 4u);
-            temp |= ((*src++ & 0xFF) << 4u);
-            dest[ichan] = (double)temp;
-        }
-        break;
-
     case 16:
         if (detType == slsDetectorDefs::JUNGFRAU ||
             detType == slsDetectorDefs::GOTTHARD2) {
@@ -1228,18 +1130,6 @@ void qDrawPlot::toDoublePixelData(double *dest, char *source, int size,
     }
 }
 
-void qDrawPlot::rearrangeGotthard25data(double *data) {
-    const int nChans = NUM_GOTTHARD25_CHANS;
-    double temp[nChans * 2] = {0.0};
-    for (int i = 0; i != nChans; ++i) {
-        // master module
-        temp[i * 2] = data[i];
-        // slave module
-        temp[i * 2 + 1] = data[nChans + i];
-    }
-    memcpy(data, temp, nChans * 2 * sizeof(double));
-}
-
 void qDrawPlot::UpdatePlot() {
     std::lock_guard<std::mutex> lock(mPlots);
     LOG(logDEBUG) << "Update Plot";
@@ -1274,5 +1164,3 @@ void qDrawPlot::UpdatePlot() {
 
     LOG(logDEBUG) << "End of Update Plot";
 }
-
-} // namespace sls

slsDetectorGui/src/qTabAdvanced.cpp

@@ -5,9 +5,7 @@
 #include "qDrawPlot.h"
 #include "sls/network_utils.h"
 
-namespace sls {
+qTabAdvanced::qTabAdvanced(QWidget *parent, sls::Detector *detector,
-
-qTabAdvanced::qTabAdvanced(QWidget *parent, Detector *detector,
                            qDrawPlot *p)
     : QWidget(parent), det(detector), plot(p) {
     setupUi(this);
@@ -445,7 +443,7 @@ void qTabAdvanced::SetDetectorUDPIP(bool force) {
         std::string s = dispDetectorUDPIP->text().toAscii().constData();
         LOG(logINFO) << "Setting Detector UDP IP:" << s;
         try {
-            det->setSourceUDPIP(IpAddr{s},
+            det->setSourceUDPIP(sls::IpAddr{s},
                                 {comboDetector->currentIndex()});
         }
         CATCH_HANDLE("Could not set Detector UDP IP.",
@@ -463,7 +461,7 @@ void qTabAdvanced::SetDetectorUDPMAC(bool force) {
         std::string s = dispDetectorUDPMAC->text().toAscii().constData();
         LOG(logINFO) << "Setting Detector UDP MAC:" << s;
         try {
-            det->setSourceUDPMAC(MacAddr{s},
+            det->setSourceUDPMAC(sls::MacAddr{s},
                                  {comboDetector->currentIndex()});
         }
         CATCH_HANDLE("Could not set Detector UDP MAC.",
@@ -491,7 +489,7 @@ void qTabAdvanced::SetCltZMQIP(bool force) {
         std::string s = dispZMQIP->text().toAscii().constData();
         LOG(logINFO) << "Setting Client ZMQ IP:" << s;
         try {
-            det->setClientZmqIp(IpAddr{s},
+            det->setClientZmqIp(sls::IpAddr{s},
                                 {comboDetector->currentIndex()});
         }
         CATCH_HANDLE("Could not set Client ZMQ IP.",
@@ -549,7 +547,7 @@ void qTabAdvanced::SetRxrUDPIP(bool force) {
         std::string s = dispRxrUDPIP->text().toAscii().constData();
         LOG(logINFO) << "Setting Receiver UDP IP:" << s;
         try {
-            det->setDestinationUDPIP(IpAddr{s},
+            det->setDestinationUDPIP(sls::IpAddr{s},
                                      {comboDetector->currentIndex()});
         }
         CATCH_HANDLE("Could not set Receiver UDP IP.",
@@ -567,7 +565,7 @@ void qTabAdvanced::SetRxrUDPMAC(bool force) {
         std::string s = dispRxrUDPMAC->text().toAscii().constData();
         LOG(logINFO) << "Setting Receiver UDP MAC:" << s;
         try {
-            det->setDestinationUDPMAC(MacAddr{s},
+            det->setDestinationUDPMAC(sls::MacAddr{s},
                                       {comboDetector->currentIndex()});
         }
         CATCH_HANDLE("Could not set Receiver UDP MAC.",
@@ -595,7 +593,7 @@ void qTabAdvanced::SetRxrZMQIP(bool force) {
         std::string s = dispRxrZMQIP->text().toAscii().constData();
         LOG(logINFO) << "Setting Receiver ZMQ IP:" << s;
         try {
-            det->setRxZmqIP(IpAddr{s}, {comboDetector->currentIndex()});
+            det->setRxZmqIP(sls::IpAddr{s}, {comboDetector->currentIndex()});
         }
         CATCH_HANDLE("Could not set Receiver ZMQ IP.",
                      "qTabAdvanced::SetRxrZMQIP", this,
@@ -893,5 +891,3 @@ void qTabAdvanced::Refresh() {
     }
     LOG(logDEBUG) << "**Updated Advanced Tab";
 }
-
-} // namespace sls

slsDetectorGui/src/qTabDataOutput.cpp

@@ -11,9 +11,7 @@
 
 #include <unistd.h>
 
-namespace sls {
+qTabDataOutput::qTabDataOutput(QWidget *parent, sls::Detector *detector)
-
-qTabDataOutput::qTabDataOutput(QWidget *parent, Detector *detector)
     : QWidget(parent), det(detector), btnGroupRate(nullptr) {
     setupUi(this);
     SetupWidgetWindow();
@@ -234,7 +232,7 @@ void qTabDataOutput::GetFileFormat() {
             comboFileFormat->setCurrentIndex(static_cast<int>(retval));
             break;
         default:
-            throw RuntimeError(std::string("Unknown file format: ") +
+            throw sls::RuntimeError(std::string("Unknown file format: ") +
                                     std::to_string(static_cast<int>(retval)));
         }
     }
@@ -341,7 +339,7 @@ void qTabDataOutput::EnableRateCorrection() {
     LOG(logINFO) << "Disabling Rate correction";
     // disable
     try {
-        det->setRateCorrection(ns(0));
+        det->setRateCorrection(sls::ns(0));
     }
     CATCH_HANDLE("Could not switch off rate correction.",
                  "qTabDataOutput::EnableRateCorrection", this,
@@ -359,7 +357,7 @@ void qTabDataOutput::SetRateCorrection() {
             int64_t deadtime = spinCustomDeadTime->value();
             LOG(logINFO) << "Setting Rate Correction with custom dead time: "
                          << deadtime;
-            det->setRateCorrection(ns(deadtime));
+            det->setRateCorrection(sls::ns(deadtime));
         }
         // default dead time
         else {
@@ -444,5 +442,3 @@ void qTabDataOutput::Refresh() {
 
     LOG(logDEBUG) << "**Updated DataOutput Tab";
 }
-
-} // namespace sls

slsDetectorGui/src/qTabDebugging.cpp

@@ -7,9 +7,7 @@
 #include <QGridLayout>
 #include <QTreeWidget>
 
-namespace sls {
+qTabDebugging::qTabDebugging(QWidget *parent, sls::Detector *detector)
-
-qTabDebugging::qTabDebugging(QWidget *parent, Detector *detector)
     : QWidget(parent), det(detector), treeDet(nullptr),
       lblDetectorHostname(nullptr), lblDetectorFirmware(nullptr),
       lblDetectorSoftware(nullptr) {
@@ -64,7 +62,7 @@ void qTabDebugging::GetDetectorStatus() {
     LOG(logDEBUG) << "Getting Status";
 
     try {
-        std::string status = ToString(
+        std::string status = sls::ToString(
             det->getDetectorStatus({comboDetector->currentIndex()})[0]);
         lblStatus->setText(QString(status.c_str()).toUpper());
     }
@@ -90,7 +88,7 @@ void qTabDebugging::GetInfo() {
     lblDetectorFirmware->setFixedWidth(100);
     layout->addWidget(dispFrame, 0, 1);
     QString detName =
-        QString(ToString(det->getDetectorType().squash()).c_str());
+        QString(sls::ToString(det->getDetectorType().squash()).c_str());
 
     switch (det->getDetectorType().squash()) {
 
@@ -243,5 +241,3 @@ void qTabDebugging::Refresh() {
     GetDetectorStatus();
     LOG(logDEBUG) << "**Updated Debugging Tab";
 }
-
-} // namespace sls

slsDetectorGui/src/qTabDeveloper.cpp

@@ -4,9 +4,7 @@
 #include "qDacWidget.h"
 #include "qDefs.h"
 
-namespace sls {
+qTabDeveloper::qTabDeveloper(QWidget *parent, sls::Detector *detector)
-
-qTabDeveloper::qTabDeveloper(QWidget *parent, Detector *detector)
     : QWidget(parent), det(detector) {
     setupUi(this);
     SetupWidgetWindow();
@@ -18,6 +16,12 @@ qTabDeveloper::~qTabDeveloper() {}
 void qTabDeveloper::SetupWidgetWindow() {
     int tempid = 0;
 
+    comboHV->hide();
+    lblComboHV->hide();
+    lblSpinHV->hide();
+    spinHV->hide();
+    hvmin = HV_MIN;
+
     try {
         slsDetectorDefs::detectorType detType = det->getDetectorType().squash();
         switch (detType) {
@@ -78,6 +82,8 @@ void qTabDeveloper::SetupWidgetWindow() {
             break;
 
         case slsDetectorDefs::GOTTHARD:
+            comboHV->show();
+            lblComboHV->show();
             dacWidgets.push_back(new qDacWidget(
                 this, det, true,
                 "v Reference: ", getSLSIndex(detType, tempid++)));
@@ -111,6 +117,8 @@ void qTabDeveloper::SetupWidgetWindow() {
             break;
 
         case slsDetectorDefs::JUNGFRAU:
+            lblSpinHV->show();
+            spinHV->show();
             dacWidgets.push_back(
                 new qDacWidget(this, det, true,
                                "v vb comp: ", getSLSIndex(detType, tempid++)));
@@ -140,6 +148,8 @@ void qTabDeveloper::SetupWidgetWindow() {
             break;
 
         case slsDetectorDefs::MOENCH:
+            lblSpinHV->show();
+            spinHV->show();
             dacWidgets.push_back(
                 new qDacWidget(this, det, true,
                                "vbp_colbuf: ", getSLSIndex(detType, tempid++)));
@@ -163,6 +173,9 @@ void qTabDeveloper::SetupWidgetWindow() {
             break;
 
         case slsDetectorDefs::MYTHEN3:
+            lblSpinHV->show();
+            spinHV->show();
+            hvmin = 0;
             dacWidgets.push_back(new qDacWidget(
                 this, det, true, "vcassh: ", getSLSIndex(detType, tempid++)));
             dacWidgets.push_back(new qDacWidget(
@@ -203,6 +216,9 @@ void qTabDeveloper::SetupWidgetWindow() {
             break;
 
         case slsDetectorDefs::GOTTHARD2:
+            lblSpinHV->show();
+            spinHV->show();
+            hvmin = 0;
             dacWidgets.push_back(
                 new qDacWidget(this, det, true,
                                "vref_h_adc: ", getSLSIndex(detType, tempid++)));
@@ -274,6 +290,9 @@ void qTabDeveloper::SetupWidgetWindow() {
 void qTabDeveloper::Initialization() {
     connect(comboDetector, SIGNAL(currentIndexChanged(int)), this,
             SLOT(Refresh()));
+    connect(comboHV, SIGNAL(currentIndexChanged(int)), this,
+            SLOT(SetHighVoltage()));
+    connect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
 }
 
 void qTabDeveloper::PopulateDetectors() {
@@ -290,6 +309,75 @@ void qTabDeveloper::PopulateDetectors() {
     comboDetector->setCurrentIndex(0);
 }
 
+void qTabDeveloper::GetHighVoltage() {
+    // not enabled for eiger
+    if (!comboHV->isVisible() && !spinHV->isVisible())
+        return;
+    LOG(logDEBUG) << "Getting High Voltage";
+    disconnect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
+    disconnect(comboHV, SIGNAL(currentIndexChanged(int)), this,
+               SLOT(SetHighVoltage()));
+    try {
+        // dac units
+        auto retval = det->getHighVoltage({comboDetector->currentIndex() - 1})
+                          .tsquash("Inconsistent values for high voltage.");
+        // spinHV
+        if (spinHV->isVisible()) {
+            if (retval != 0 && retval < hvmin && retval > HV_MAX) {
+                throw sls::RuntimeError(std::string("Unknown High Voltage: ") +
+                                        std::to_string(retval));
+            }
+            spinHV->setValue(retval);
+        }
+        // combo HV
+        else {
+            switch (retval) {
+            case 0:
+                comboHV->setCurrentIndex(HV_0);
+                break;
+            case 90:
+                comboHV->setCurrentIndex(HV_90);
+                break;
+            case 110:
+                comboHV->setCurrentIndex(HV_110);
+                break;
+            case 120:
+                comboHV->setCurrentIndex(HV_120);
+                break;
+            case 150:
+                comboHV->setCurrentIndex(HV_150);
+                break;
+            case 180:
+                comboHV->setCurrentIndex(HV_180);
+                break;
+            case 200:
+                comboHV->setCurrentIndex(HV_200);
+                break;
+            default:
+                throw sls::RuntimeError(std::string("Unknown High Voltage: ") +
+                                        std::to_string(retval));
+            }
+        }
+    }
+    CATCH_DISPLAY("Could not get high voltage.",
+                  "qTabDeveloper::GetHighVoltage")
+    connect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
+    connect(comboHV, SIGNAL(currentIndexChanged(int)), this,
+            SLOT(SetHighVoltage()));
+}
+
+void qTabDeveloper::SetHighVoltage() {
+    int val = (comboHV->isVisible() ? comboHV->currentText().toInt()
+                                    : spinHV->value());
+    LOG(logINFO) << "Setting high voltage:" << val;
+
+    try {
+        det->setHighVoltage({comboDetector->currentIndex() - 1});
+    }
+    CATCH_HANDLE("Could not set high voltage.", "qTabDeveloper::SetHighVoltage",
+                 this, &qTabDeveloper::GetHighVoltage)
+}
+
 slsDetectorDefs::dacIndex
 qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
     switch (detType) {
@@ -343,7 +431,7 @@ qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
         case 22:
             return slsDetectorDefs::TEMPERATURE_FPGA;
         default:
-            throw RuntimeError(std::string("Unknown dac/adc index") +
+            throw sls::RuntimeError(std::string("Unknown dac/adc index") +
                                     std::to_string(index));
         }
         break;
@@ -370,7 +458,7 @@ qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
         case 9:
             return slsDetectorDefs::TEMPERATURE_FPGA;
         default:
-            throw RuntimeError(std::string("Unknown dac/adc index") +
+            throw sls::RuntimeError(std::string("Unknown dac/adc index") +
                                     std::to_string(index));
         }
         break;
@@ -396,7 +484,7 @@ qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
         case 8:
             return slsDetectorDefs::TEMPERATURE_ADC;
         default:
-            throw RuntimeError(std::string("Unknown dac/adc index") +
+            throw sls::RuntimeError(std::string("Unknown dac/adc index") +
                                     std::to_string(index));
         }
         break;
@@ -420,7 +508,7 @@ qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
         case 7:
             return slsDetectorDefs::IBIAS_SFP;
         default:
-            throw RuntimeError(std::string("Unknown dac/adc index") +
+            throw sls::RuntimeError(std::string("Unknown dac/adc index") +
                                     std::to_string(index));
         }
         break;
@@ -462,7 +550,7 @@ qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
         case 16:
             return slsDetectorDefs::VTHRESHOLD;
         default:
-            throw RuntimeError(std::string("Unknown dac/adc index") +
+            throw sls::RuntimeError(std::string("Unknown dac/adc index") +
                                     std::to_string(index));
         }
         break;
@@ -498,13 +586,13 @@ qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
         case 13:
             return slsDetectorDefs::VCOM_ADC2;
         default:
-            throw RuntimeError(std::string("Unknown dac/adc index") +
+            throw sls::RuntimeError(std::string("Unknown dac/adc index") +
                                     std::to_string(index));
         }
         break;
 
     default:
-        throw RuntimeError(std::string("Unknown detector type"));
+        throw sls::RuntimeError(std::string("Unknown detector type"));
     }
 }
 
@@ -516,7 +604,6 @@ void qTabDeveloper::Refresh() {
     for (const auto &it : adcWidgets) {
         it->SetDetectorIndex(comboDetector->currentIndex() - 1);
     }
+    GetHighVoltage();
     LOG(logDEBUG) << "**Updated Developer Tab";
 }
-
-} // namespace sls

slsDetectorGui/src/qTabMeasurement.cpp

@@ -7,9 +7,7 @@
 #include <QStandardItemModel>
 #include <QTimer>
 
-namespace sls {
+qTabMeasurement::qTabMeasurement(QWidget *parent, sls::Detector *detector,
-
-qTabMeasurement::qTabMeasurement(QWidget *parent, Detector *detector,
                                  qDrawPlot *p)
     : QWidget(parent), det(detector), plot(p), progressTimer(nullptr) {
     setupUi(this);
@@ -339,26 +337,9 @@ void qTabMeasurement::GetTimingMode() {
     disconnect(comboTimingMode, SIGNAL(currentIndexChanged(int)), this,
                SLOT(SetTimingMode(int)));
     try {
-        
-        slsDetectorDefs::timingMode retval{slsDetectorDefs::AUTO_TIMING};
-        // m3: remove slave modes (always trigger) before squashing
-        if (det->getDetectorType().squash() == slsDetectorDefs::MYTHEN3) {
-            auto retvals = det->getTimingMode();
-            auto is_master = det->getMaster();
-            Result<slsDetectorDefs::timingMode> masterRetvals;
-            for (size_t i = 0; i != is_master.size(); ++i) {
-                if (is_master[i]) {
-                    masterRetvals.push_back(retvals[i]);
-                }
-            }
-            retval = masterRetvals.tsquash(
-                "Inconsistent timing mode for all detectors.");
-        } else {
-            retval = det->getTimingMode().tsquash(
-                "Inconsistent timing mode for all detectors.");
-        }
-
         auto oldMode = comboTimingMode->currentIndex();
+        auto retval = det->getTimingMode().tsquash(
+            "Inconsistent timing mode for all detectors.");
         switch (retval) {
         case slsDetectorDefs::AUTO_TIMING:
         case slsDetectorDefs::TRIGGER_EXPOSURE:
@@ -372,7 +353,7 @@ void qTabMeasurement::GetTimingMode() {
             }
             break;
         default:
-            throw RuntimeError(std::string("Unknown timing mode: ") +
+            throw sls::RuntimeError(std::string("Unknown timing mode: ") +
                                     std::to_string(retval));
         }
     }
@@ -409,7 +390,7 @@ void qTabMeasurement::GetBurstMode() {
             ShowTriggerDelay();
             break;
         default:
-            throw RuntimeError(std::string("Unknown burst mode: ") +
+            throw sls::RuntimeError(std::string("Unknown burst mode: ") +
                                     std::to_string(retval));
         }
     }
@@ -1019,5 +1000,3 @@ void qTabMeasurement::Refresh() {
 
     LOG(logDEBUG) << "**Updated Measurement Tab";
 }
-
-} // namespace sls

slsDetectorGui/src/qTabMessages.cpp

@@ -11,8 +11,6 @@
 #include <QTextStream>
 #include <string>
 
-namespace sls {
-
 qTabMessages::qTabMessages(QWidget *parent) : QWidget(parent) {
     setupUi(this);
     SetupWidgetWindow();
@@ -144,5 +142,3 @@ void qTabMessages::Refresh() {
     dispCommand->clear();
     dispCommand->setFocus();
 }
-
-} // namespace sls

slsDetectorGui/src/qTabPlot.cpp

@@ -6,8 +6,6 @@
 #include <QStackedLayout>
 #include <QStandardItemModel>
 
-namespace sls {
-
 QString qTabPlot::defaultPlotTitle("");
 QString qTabPlot::defaultHistXAxisTitle("Channel Number");
 QString qTabPlot::defaultHistYAxisTitle("Counts");
@@ -15,7 +13,7 @@ QString qTabPlot::defaultImageXAxisTitle("Pixel");
 QString qTabPlot::defaultImageYAxisTitle("Pixel");
 QString qTabPlot::defaultImageZAxisTitle("Intensity");
 
-qTabPlot::qTabPlot(QWidget *parent, Detector *detector, qDrawPlot *p)
+qTabPlot::qTabPlot(QWidget *parent, sls::Detector *detector, qDrawPlot *p)
     : QWidget(parent), det(detector), plot(p), is1d(false) {
     setupUi(this);
     SetupWidgetWindow();
@@ -76,10 +74,6 @@ void qTabPlot::SetupWidgetWindow() {
     // set zmq high water mark to GUI_ZMQ_RCV_HWM (2)
     spinSndHwm->setValue(qDefs::GUI_ZMQ_RCV_HWM);
     spinRcvHwm->setValue(qDefs::GUI_ZMQ_RCV_HWM);
-
-    if (chkGapPixels->isEnabled()) {
-        chkGapPixels->setChecked(true);
-    }
 }
 
 void qTabPlot::Initialization() {
@@ -333,7 +327,6 @@ void qTabPlot::SetGapPixels(bool enable) {
     LOG(logINFO) << "Setting Gap Pixels Enable to " << enable;
     try {
         det->setGapPixelsinCallback(enable);
-        plot->SetGapPixels(enable);
     }
     CATCH_HANDLE("Could not set gap pixels enable.", "qTabPlot::SetGapPixels",
                  this, &qTabPlot::GetGapPixels)
@@ -799,5 +792,3 @@ void qTabPlot::Refresh() {
 
     LOG(logDEBUG) << "**Updated Plot Tab";
 }
-
-} // namespace sls

slsDetectorGui/src/qTabSettings.cpp

@@ -6,9 +6,7 @@
 #include "sls/bit_utils.h"
 #include <QStandardItemModel>
 
-namespace sls {
+qTabSettings::qTabSettings(QWidget *parent, sls::Detector *detector)
-
-qTabSettings::qTabSettings(QWidget *parent, Detector *detector)
     : QWidget(parent), det(detector) {
     setupUi(this);
     SetupWidgetWindow();
@@ -19,12 +17,6 @@ qTabSettings::~qTabSettings() {}
 
 void qTabSettings::SetupWidgetWindow() {
 
-    comboHV->hide();
-    lblComboHV->hide();
-    lblSpinHV->hide();
-    spinHV->hide();
-    hvmin = HV_MIN;
-
     counters = std::vector<QCheckBox *>{chkCounter1, chkCounter2, chkCounter3};
 
     spinThreshold2->hide();
@@ -43,9 +35,6 @@ void qTabSettings::SetupWidgetWindow() {
     // enabling according to det type
     slsDetectorDefs::detectorType detType = det->getDetectorType().squash();
     if (detType == slsDetectorDefs::MYTHEN3) {
-        lblSpinHV->show();
-        spinHV->show();
-        hvmin = 0;
         lblDynamicRange->setEnabled(true);
         comboDynamicRange->setEnabled(true);
 
@@ -71,43 +60,22 @@ void qTabSettings::SetupWidgetWindow() {
         QStandardItemModel *model =
             qobject_cast<QStandardItemModel *>(comboDynamicRange->model());
         if (model) {
+            QModelIndex index;
             QStandardItem *item;
-            int dr = DYNAMICRANGE_4;
+            index =
-            for (int i = 0; i != 2; ++i) {
+                model->index(DYNAMICRANGE_4, comboDynamicRange->modelColumn(),
-                // disable dr 4
+                             comboDynamicRange->rootModelIndex());
-                QModelIndex index =
+            item = model->itemFromIndex(index);
-                    model->index(dr, comboDynamicRange->modelColumn(),
+            item->setEnabled(false);
-                                 comboDynamicRange->rootModelIndex());
-                item = model->itemFromIndex(index);
-                item->setEnabled(false);
-
-                // disable dr 12
-                dr = DYNAMICRANGE_12;
-            }
         }
     } else if (detType == slsDetectorDefs::EIGER) {
-        lblSpinHV->show();
-        spinHV->show();
-        hvmin = 0;        
         lblDynamicRange->setEnabled(true);
         comboDynamicRange->setEnabled(true);
         lblThreshold->setEnabled(true);
         spinThreshold->setEnabled(true);
     } else if (detType == slsDetectorDefs::JUNGFRAU) {
-        lblSpinHV->show();
-        spinHV->show();
         lblGainMode->setEnabled(true);
         comboGainMode->setEnabled(true);
-    } else if (detType == slsDetectorDefs::GOTTHARD) {
-        comboHV->show();
-        lblComboHV->show();
-    } else if (detType == slsDetectorDefs::MOENCH) {
-        lblSpinHV->show();
-        spinHV->show();        
-    } else if (detType == slsDetectorDefs::GOTTHARD2) {
-        lblSpinHV->show();
-        spinHV->show();
-        hvmin = 0;        
     }
 
     // default settings for the disabled
@@ -189,11 +157,6 @@ void qTabSettings::ShowFixG0(bool expertMode) {
 }
 
 void qTabSettings::Initialization() {
-    // High voltage
-    connect(comboHV, SIGNAL(currentIndexChanged(int)), this,
-            SLOT(SetHighVoltage()));
-    connect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
-
     // Settings
     if (comboSettings->isEnabled())
         connect(comboSettings, SIGNAL(currentIndexChanged(int)), this,
@@ -230,91 +193,6 @@ void qTabSettings::Initialization() {
     }
 }
 
-void qTabSettings::GetHighVoltage() {
-    // not enabled for eiger
-    if (!comboHV->isVisible() && !spinHV->isVisible())
-        return;
-    LOG(logDEBUG) << "Getting High Voltage";
-    disconnect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
-    disconnect(comboHV, SIGNAL(currentIndexChanged(int)), this,
-               SLOT(SetHighVoltage()));
-    try {
-        Result<int> retvals = det->getHighVoltage();
-
-        int retval = 0;    
-        if (det->getDetectorType().squash() != slsDetectorDefs::EIGER) {
-            retval = retvals.tsquash("Inconsistent values for high voltage.");
-        } 
-        // eiger slaves return -999
-        else {
-
-            auto is_master = det->getMaster();
-            Result<int> master_retvals;
-            for (size_t i = 0; i != retvals.size(); ++i) {
-                if (is_master[i]) {
-                    master_retvals.push_back(retvals[i]);
-                }
-            }
-            retval = master_retvals.tsquash("Inconsistent values for high voltage.");
-        } 
-        
-        // spinHV
-        if (spinHV->isVisible()) {
-            if (retval != 0 && retval < hvmin && retval > HV_MAX) {
-                throw RuntimeError(std::string("Unknown High Voltage: ") +
-                                        std::to_string(retval));
-            }
-            spinHV->setValue(retval);
-        }
-        // combo HV
-        else {
-            switch (retval) {
-            case 0:
-                comboHV->setCurrentIndex(HV_0);
-                break;
-            case 90:
-                comboHV->setCurrentIndex(HV_90);
-                break;
-            case 110:
-                comboHV->setCurrentIndex(HV_110);
-                break;
-            case 120:
-                comboHV->setCurrentIndex(HV_120);
-                break;
-            case 150:
-                comboHV->setCurrentIndex(HV_150);
-                break;
-            case 180:
-                comboHV->setCurrentIndex(HV_180);
-                break;
-            case 200:
-                comboHV->setCurrentIndex(HV_200);
-                break;
-            default:
-                throw RuntimeError(std::string("Unknown High Voltage: ") +
-                                        std::to_string(retval));
-            }
-        }
-    }
-    CATCH_DISPLAY("Could not get high voltage.",
-                  "qTabSettings::GetHighVoltage")
-    connect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
-    connect(comboHV, SIGNAL(currentIndexChanged(int)), this,
-            SLOT(SetHighVoltage()));
-}
-
-void qTabSettings::SetHighVoltage() {
-    int val = (comboHV->isVisible() ? comboHV->currentText().toInt()
-                                    : spinHV->value());
-    LOG(logINFO) << "Setting high voltage:" << val;
-
-    try {
-        det->setHighVoltage(val);
-    }
-    CATCH_HANDLE("Could not set high voltage.", "qTabSettings::SetHighVoltage",
-                 this, &qTabSettings::GetHighVoltage)
-}
-
 void qTabSettings::GetSettings() {
     LOG(logDEBUG) << "Getting settings";
     disconnect(comboSettings, SIGNAL(currentIndexChanged(int)), this,
@@ -331,7 +209,7 @@ void qTabSettings::GetSettings() {
             break;
         default:
             if ((int)retval < -1 || (int)retval >= comboSettings->count()) {
-                throw RuntimeError(std::string("Unknown settings: ") +
+                throw sls::RuntimeError(std::string("Unknown settings: ") +
                                         std::to_string(retval));
             }
             comboSettings->setCurrentIndex(retval);
@@ -347,7 +225,7 @@ void qTabSettings::SetSettings(int index) {
     // settings
     auto val = static_cast<slsDetectorDefs::detectorSettings>(index);
     try {
-        LOG(logINFO) << "Setting Settings to " << ToString(val);
+        LOG(logINFO) << "Setting Settings to " << sls::ToString(val);
         det->setSettings(val);
     }
     CATCH_HANDLE("Could not set settings.", "qTabSettings::SetSettings", this,
@@ -366,7 +244,7 @@ void qTabSettings::GetGainMode() {
         auto retval = det->getGainMode().tsquash(
             "Inconsistent gain mode for all detectors.");
         if ((int)retval < 0 || (int)retval >= comboGainMode->count()) {
-            throw RuntimeError(std::string("Unknown gain mode: ") +
+            throw sls::RuntimeError(std::string("Unknown gain mode: ") +
                                     std::to_string(retval));
         }
         // warning when using fix_g0 and not in export mode
@@ -427,9 +305,6 @@ void qTabSettings::GetDynamicRange() {
         case 16:
             comboDynamicRange->setCurrentIndex(DYNAMICRANGE_16);
             break;
-        case 12:
-            comboDynamicRange->setCurrentIndex(DYNAMICRANGE_12);
-            break;
         case 8:
             comboDynamicRange->setCurrentIndex(DYNAMICRANGE_8);
             break;
@@ -437,7 +312,7 @@ void qTabSettings::GetDynamicRange() {
             comboDynamicRange->setCurrentIndex(DYNAMICRANGE_4);
             break;
         default:
-            throw RuntimeError(std::string("Unknown dynamic range: ") +
+            throw sls::RuntimeError(std::string("Unknown dynamic range: ") +
                                     std::to_string(retval));
         }
     }
@@ -458,9 +333,6 @@ void qTabSettings::SetDynamicRange(int index) {
         case DYNAMICRANGE_16:
             det->setDynamicRange(16);
             break;
-        case DYNAMICRANGE_12:
-            det->setDynamicRange(12);
-            break;
         case DYNAMICRANGE_8:
             det->setDynamicRange(8);
             break;
@@ -468,7 +340,7 @@ void qTabSettings::SetDynamicRange(int index) {
             det->setDynamicRange(4);
             break;
         default:
-            throw RuntimeError(std::string("Unknown dynamic range: ") +
+            throw sls::RuntimeError(std::string("Unknown dynamic range: ") +
                                     std::to_string(index));
         }
     }
@@ -515,7 +387,7 @@ void qTabSettings::SetThresholdEnergies() {
     slsDetectorDefs::detectorSettings sett =
         static_cast<slsDetectorDefs::detectorSettings>(
             comboSettings->currentIndex());
-    LOG(logINFO) << "Setting Threshold Energies to " << ToString(eV)
+    LOG(logINFO) << "Setting Threshold Energies to " << sls::ToString(eV)
                  << " (eV)";
     try {
         det->setThresholdEnergy(eV, sett);
@@ -546,7 +418,7 @@ void qTabSettings::GetCounterMask() {
     disconnect(chkCounter3, SIGNAL(toggled(bool)), this,
                SLOT(SetCounterMask()));
     try {
-        auto retval = getSetBits(det->getCounterMask().tsquash(
+        auto retval = sls::getSetBits(det->getCounterMask().tsquash(
             "Counter mask is inconsistent for all detectors."));
         // default to unchecked
         for (auto p : counters) {
@@ -555,7 +427,7 @@ void qTabSettings::GetCounterMask() {
         // if retval[i] = 2, chkCounter2 is checked
         for (auto i : retval) {
             if (i > 3) {
-                throw RuntimeError(
+                throw sls::RuntimeError(
                     std::string("Unknown counter index : ") +
                     std::to_string(static_cast<int>(i)));
             }
@@ -586,8 +458,6 @@ void qTabSettings::SetCounterMask() {
 void qTabSettings::Refresh() {
     LOG(logDEBUG) << "**Updating Settings Tab";
 
-    GetHighVoltage();
-
     if (comboSettings->isEnabled()) {
         GetSettings();
     }
@@ -614,5 +484,3 @@ void qTabSettings::Refresh() {
 
     LOG(logDEBUG) << "**Updated Settings Tab";
 }
-
-} // namespace sls

slsDetectorServers/ctbDetectorServer/RegisterDefs.h

@@ -165,9 +165,11 @@
 #define PATTERN_OUT_LSB_REG (0x20 << MEM_MAP_SHIFT)
 #define PATTERN_OUT_MSB_REG (0x21 << MEM_MAP_SHIFT)
 
-/* Frame number of next acquisition register (64 bit register) */
+/* Frames From Start 64 bit RO register TODO */
-#define NEXT_FRAME_NUMB_LOCAL_LSB_REG (0x22 << MEM_MAP_SHIFT)
+//#define FRAMES_FROM_START_LSB_REG           (0x22 << MEM_MAP_SHIFT) // Not
-#define NEXT_FRAME_NUMB_LOCAL_MSB_REG (0x23 << MEM_MAP_SHIFT)
+// used in FW #define FRAMES_FROM_START_MSB_REG           (0x23 <<
+// MEM_MAP_SHIFT)
+//// Not used in FW
 
 /* Frames From Start PG 64 bit RO register. Reset using CONTROL_CRST. TODO */
 #define FRAMES_FROM_START_PG_LSB_REG (0x24 << MEM_MAP_SHIFT)