updated all servers

Trim

.clang-format

@@ -4,3 +4,4 @@ IndentWidth: 4
 UseTab: Never
 ColumnLimit: 80
 AlignConsecutiveAssignments: false 
+AlignConsecutiveMacros: true

CMakeLists.txt

@@ -46,7 +46,32 @@ option(SLS_BUILD_DOCS "docs" OFF)
 option(SLS_BUILD_EXAMPLES "examples" OFF)
 option(SLS_TUNE_LOCAL "tune to local machine" OFF)
 
+# set(ClangFormat_BIN_NAME clang-format)
+set(ClangFormat_EXCLUDE_PATTERNS  "build/" 
+                                    "libs/" 
+                                    "slsDetectorCalibration/" 
+                                    "ctbGui/" 
+                                    "manual/"
+                                    "python/"
+                                    "sample/"
+                                    ${CMAKE_BINARY_DIR})
+find_package(ClangFormat)
 
+#Enable LTO if available
+check_ipo_supported(RESULT SLS_LTO_AVAILABLE)
+
+
+# Use ld.gold if it is available and isn't disabled explicitly
+option(SLS_USE_LD_GOLD "Use GNU gold linker" ON)
+if (SLS_USE_LD_GOLD)
+    execute_process(COMMAND ${CMAKE_C_COMPILER} -fuse-ld=gold -Wl,--version ERROR_QUIET OUTPUT_VARIABLE LD_VERSION)
+    if ("${LD_VERSION}" MATCHES "GNU gold")
+        set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fuse-ld=gold")
+        set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fuse-ld=gold")
+    else ()
+        message(WARNING "GNU gold linker isn't available, using the default system linker.")
+    endif ()
+endif ()
 set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
 
 if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)

cmake/FindClangFormat.cmake

@@ -0,0 +1,39 @@
+# Find Clang format
+if(NOT ClangFormat_BIN_NAME)
+	set(ClangFormat_BIN_NAME clang-format)
+endif()
+
+# if custom path check there first
+if(ClangFormat_ROOT_DIR)
+    find_program(ClangFormat_BIN 
+        NAMES
+        ${ClangFormat_BIN_NAME}
+        PATHS
+        "${ClangFormat_ROOT_DIR}"
+        NO_DEFAULT_PATH)
+endif()
+
+find_program(ClangFormat_BIN NAMES ${ClangFormat_BIN_NAME})
+
+include(FindPackageHandleStandardArgs)
+FIND_PACKAGE_HANDLE_STANDARD_ARGS(
+    ClangFormat
+    DEFAULT_MSG 
+    ClangFormat_BIN)
+
+mark_as_advanced(
+    ClangFormat_BIN)
+
+if(ClangFormat_FOUND)
+    exec_program(${ClangFormat_BIN} ${CMAKE_CURRENT_SOURCE_DIR} ARGS --version OUTPUT_VARIABLE CLANG_VERSION_TEXT)
+    string(REGEX MATCH "([0-9]+)\\.[0-9]+\\.[0-9]+" CLANG_VERSION ${CLANG_VERSION_TEXT})
+    if((${CLANG_VERSION} GREATER "9") OR (${CLANG_VERSION} EQUAL "9"))
+        # A CMake script to find all source files and setup clang-format targets for them
+        message(STATUS "found clang-format \"${CLANG_VERSION}\" adding formatting targets")
+        include(clang-format)
+    else()
+        message(STATUS "clang-format version \"${CLANG_VERSION}\" found but need at least 9. Not setting up format targets")
+    endif()
+else()
+    message(STATUS "clang-format not found. Not setting up format targets")
+endif()

cmake/clang-format.cmake

@@ -0,0 +1,47 @@
+# A CMake script to find all source files and setup clang-format targets for them
+
+# Find all source files
+set(ClangFormat_CXX_FILE_EXTENSIONS ${ClangFormat_CXX_FILE_EXTENSIONS} *.cpp *.h *.cxx *.hxx *.hpp *.cc *.ipp *.c)
+file(GLOB_RECURSE ALL_SOURCE_FILES ${ClangFormat_CXX_FILE_EXTENSIONS})
+
+# Don't include some common build folders
+set(ClangFormat_EXCLUDE_PATTERNS ${ClangFormat_EXCLUDE_PATTERNS} "/CMakeFiles/" "cmake")
+
+# get all project files file
+foreach (SOURCE_FILE ${ALL_SOURCE_FILES}) 
+    foreach (EXCLUDE_PATTERN ${ClangFormat_EXCLUDE_PATTERNS})
+        string(FIND ${SOURCE_FILE} ${EXCLUDE_PATTERN} EXCLUDE_FOUND) 
+        if (NOT ${EXCLUDE_FOUND} EQUAL -1) 
+            list(REMOVE_ITEM ALL_SOURCE_FILES ${SOURCE_FILE})
+        endif () 
+    endforeach ()
+endforeach ()
+
+#target for formatting soruce files
+add_custom_target(format
+    COMMENT "Running clang-format to change files"
+    COMMAND ${ClangFormat_BIN}
+    -style=file
+    -i
+    ${ALL_SOURCE_FILES}
+)
+
+
+#target to check format on source files 
+add_custom_target(format-check
+    COMMENT "Checking clang-format changes"
+    # Use ! to negate the result for correct output
+    COMMAND !
+    ${ClangFormat_BIN}
+    -style=file
+    -output-replacements-xml
+    ${ALL_SOURCE_FILES}
+    | grep -q "replacement offset" 
+)
+
+# debug to check which file will be formatted
+add_custom_target(
+    listformatfiles
+    COMMAND
+    echo ${ALL_SOURCE_FILES}
+)

cmk.sh

@@ -11,6 +11,7 @@ PYTHON=0
 TESTS=0
 SIMULATOR=0
 CTBGUI=0
+MANUALS=0
 
 
 CLEAN=0
@@ -19,7 +20,7 @@ CMAKE_PRE=""
 CMAKE_POST=""
 
 usage() { echo -e "
-Usage: $0 [-c] [-b] [-p] [e] [t] [r] [g] [s] [u] [i] [-h] [-d <HDF5 directory>] [-j] <Number of threads>
+Usage: $0 [-c] [-b] [-p] [e] [t] [r] [g] [s] [u] [i] [m] [-h] [-d <HDF5 directory>] [-j] <Number of threads>
  -[no option]: only make
  -c: Clean
  -b: Builds/Rebuilds CMake files normal mode
@@ -34,6 +35,7 @@ Usage: $0 [-c] [-b] [-p] [e] [t] [r] [g] [s] [u] [i] [-h] [-d <HDF5 directory>]
  -j: Number of threads to compile through
  -e: Debug mode
  -i: Builds tests
+ -m: Manuals
 
 Rebuild when you switch to a new build and compile in parallel:
 ./cmk.sh -bj5
@@ -69,7 +71,7 @@ For rebuilding only certain sections
  
  " ; exit 1; }
 
-while getopts ":bpchd:j:trgeisu" opt ; do
+while getopts ":bpchd:j:trgeisum" opt ; do
 	case $opt in
 	b) 
 		echo "Building of CMake files Required"
@@ -124,6 +126,10 @@ while getopts ":bpchd:j:trgeisu" opt ; do
 		echo "Compiling Options: Simulator" 
 		SIMULATOR=1
 		;; 
+	m)	
+		echo "Compiling Manuals"
+		MANUALS=1
+		;;
 	u)
 		echo "Compiling Options: Chip Test Gui"
 		CTBGUI=1
@@ -198,6 +204,12 @@ if [ $SIMULATOR -eq 1 ]; then
 	echo "Simulator Option enabled"
 fi 
 
+#Manuals
+if [ $MANUALS -eq 1 ]; then
+	CMAKE_POST+=" -DSLS_BUILD_DOCS=ON "
+	echo "Manuals Option enabled"
+fi 
+
 #Chip Test Gui
 if [ $CTBGUI -eq 1 ]; then
 	CMAKE_POST+=" -DSLS_USE_CTBGUI=ON "
@@ -251,6 +263,9 @@ else
 	make
 fi
 
+if [ $MANUALS -eq 1 ]; then
+	make docs
+fi 
 
 
 

conda-recepie/copy_lib.sh

@@ -5,18 +5,20 @@ mkdir $PREFIX/include
 mkdir $PREFIX/include/slsDetectorPackage
 
 #Shared and static libraries
-cp build/bin/libSlsDetector.so $PREFIX/lib/.
-cp build/bin/libSlsReceiver.so $PREFIX/lib/.
-cp build/bin/libSlsSupport.so $PREFIX/lib/.
+# cp build/bin/libSlsDetector.so $PREFIX/lib/.
+# cp build/bin/libSlsReceiver.so $PREFIX/lib/.
+# cp build/bin/libSlsSupport.so $PREFIX/lib/.
+
+cp build/install/lib/* $PREFIX/lib/
 
 #Binaries
-cp build/bin/sls_detector_acquire $PREFIX/bin/.
-cp build/bin/sls_detector_get $PREFIX/bin/.
-cp build/bin/sls_detector_put $PREFIX/bin/.
-cp build/bin/sls_detector_help $PREFIX/bin/.
-cp build/bin/slsReceiver $PREFIX/bin/.
-cp build/bin/slsMultiReceiver $PREFIX/bin/.
+cp build/install/bin/sls_detector_acquire $PREFIX/bin/.
+cp build/install/bin/sls_detector_get $PREFIX/bin/.
+cp build/install/bin/sls_detector_put $PREFIX/bin/.
+cp build/install/bin/sls_detector_help $PREFIX/bin/.
+cp build/install/bin/slsReceiver $PREFIX/bin/.
+cp build/install/bin/slsMultiReceiver $PREFIX/bin/.
 
-#Which headers do we need for development??
-cp build/install/include/* $PREFIX/include/slsDetectorPackage/
-# cp include/some_lib.h $PREFIX/include/.
+
+cp build/install/include/* $PREFIX/include/
+cp -r build/install/share/ $PREFIX/share

conda-recepie/meta.yaml

@@ -7,7 +7,7 @@ source:
   - path: ..
 
 build:
-  number: 2
+  number: 0
   binary_relocation: True
   rpaths:
     - lib/
@@ -37,6 +37,7 @@ requirements:
   host:
     - libstdcxx-ng
     - libgcc-ng
+    - zeromq
     - xorg-libx11
     - xorg-libice
     - xorg-libxext
@@ -46,6 +47,7 @@ requirements:
     - xorg-libxfixes
 
   run:
+    - zeromq
     - libstdcxx-ng
     - libgcc-ng 
 

ctbGui/ctbAcquisition.cpp

@@ -1646,10 +1646,13 @@ void ctbAcquisition::update() {
     
    }
 
+  if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
+    dBitOffset = 0;
+  } else {
     try {
       dBitOffset = myDet->getRxDbitOffset().tsquash("Different values");
     } CATCH_DISPLAY ("Could not get receiver dbit offset", "ctbAcquisition::update")
-
+  }
   try {
     tenG = myDet->getTenGiga().tsquash("Different values");
   } CATCH_DISPLAY ("Could not get ten giga enable", "ctbAcquisition::update")
@@ -1735,9 +1738,13 @@ void ctbAcquisition::toggleAcquisition() {
     setDigitalSamples(retval);
   } CATCH_DISPLAY ("Could not get number of digital samples", "ctbAcquisition::toggleAcquisition")
   
+  if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
+    dBitOffset = 0;
+  } else {
   try {
       dBitOffset = myDet->getRxDbitOffset().tsquash("Different values");
     } CATCH_DISPLAY ("Could not get receiver dbit offset", "ctbAcquisition::toggleAcquisition")
+  }
 
   try {
     roMode = static_cast<int>(myDet->getReadoutMode().tsquash("Different values"));
@@ -1974,6 +1981,9 @@ void ctbAcquisition::setDbitEnable(Int_t reg){
 void ctbAcquisition::updateChans() {
 
   // dbit list
+  if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
+    dbitlist.clear();
+  } else {
     try {
       auto retval = myDet->getRxDbitList().tsquash("Different values");
       dbitlist.clear();
@@ -1982,6 +1992,7 @@ void ctbAcquisition::updateChans() {
           dbitlist.push_back(value);
       }
     } CATCH_DISPLAY ("Could not get receiver dbit list.", "ctbAcquisition::updateChans")
+  }
 
   // adc mask
   try { 

ctbGui/ctbSignals.cpp

@@ -374,6 +374,16 @@ void ctbSignals::update() {
 
   } CATCH_DISPLAY ("Could not get patternIOcontrol.", "ctbSignals::update")
 
+  if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
+    // enable all
+    for (int is=0; is<64; is++) {
+      signals[is]->setDbitList(1);
+    } 
+    eDbitOffset->SetNumber(0);
+  } 
+  
+  // ctb
+  else {
     try {
 
       auto dbitlist = myDet->getRxDbitList().tsquash("Different values");
@@ -400,7 +410,7 @@ void ctbSignals::update() {
       auto val = myDet->getRxDbitOffset().tsquash("Different values");
       eDbitOffset->SetNumber(val);
     } CATCH_DISPLAY ("Could not get receiver dbit offset.", "ctbSignals::update")
-
+  }
 }
 
 

ctbGui/patternGenerator/generate.sh

@@ -21,6 +21,7 @@ if [ -f "$infile" ]
 then
 gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c ; 
 echo compiling
+echo gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c ; 
 $exe ; 
 echo cleaning
 rm $exe

docs/CMakeLists.txt

@@ -1,9 +1,9 @@
-find_package(Doxygen)
-find_package(Sphinx)
+find_package(Doxygen REQUIRED)
+find_package(Sphinx REQUIRED)
+
+
 
 
-if (DOXYGEN_FOUND AND SPHINX_FOUND)
-    # message(${CMAKE_PROJECT_SORURCE_DIR}/slsDetectorSoftware/src)
 # Utility to generate command line documentation
 add_executable(gendoc src/gendoc.cpp)
 # This is a bit hacky, but better than exposing stuff? 
@@ -66,6 +66,4 @@ if (DOXYGEN_FOUND AND SPHINX_FOUND)
               ${SPHINX_BUILD}/html
               COMMENT "Generating documentation with Sphinx")
 
-else (DOXYGEN_FOUND AND SPHINX_FOUND)
-  message("Doxygen and Sphinx are needed to build documentation")
-endif (DOXYGEN_FOUND AND SPHINX_FOUND)
+

docs/src/consuming.rst

@@ -62,6 +62,27 @@ you should be able to configure and build your project in this way.
 
 A minimal example is available at: https://github.com/slsdetectorgroup/minimal-cmake
 
+
+CMake: find_package and conda
+----------------------------------
+
+.. note::
+
+    conda can also be used for installing dependencies such as zmq, Qt4 etc. 
+
+find_package(slsDetectorPackage) also works if you have installed slsDetectorPackage using conda.
+The only difference is that you point CMake to $CONDA_PREFIX 
+
+
+.. code-block:: bash
+
+    #assuming myenv contains slsdetlib
+    conda activate myenv
+    cmake ../path/to/your/source -DCMAKE_PREFIX_PATH=$CONDA_PREFIX
+    make
+
+Depending on your system compiler you might also have to install gxx_linux-64 to compiled.
+
 No tools minimal approach
 -----------------------------
 

docs/src/gendoc.cpp

@@ -9,7 +9,6 @@
 #include <string>
 #include <vector>
 
-
 #include "CmdProxy.h"
 #include "Detector.h"
 #include "sls_detector_defs.h"
@@ -52,5 +51,4 @@ int main() {
         auto help = replace_all(tmp, "\n\t", "\n\t\t");
         fs << '\t' << cmd << usage << help << "\n";
     }
-
 }

docs/src/installation.rst

@@ -21,5 +21,49 @@ Build from source using CMake
     make -j12
     make install
 
+Install binaries using conda
+--------------------------------
+
+.. code-block:: bash
+
+    #Add channels for dependencies and our library
+    conda config --add channels conda-forge
+    conda config --add channels slsdetectorgroup
+    conda config --set channel_priority strict
+
+    #cerate an environment with our library, then activate
+    conda create -n myenv slsdetlib=2020.03.18.dev2
+    codna activate myenv
+
+    #ready to use
+    sls_detector_get exptime
+    etc ...
 
 
+
+Build from source on old distributions
+-----------------------------------------
+
+If your linux distribution doesn't come with a C++11 compiler (gcc>4.8) then 
+it's possible to install a newer gcc using conda and build the slsDetectorPackage
+using this compiler
+
+.. code-block:: bash
+
+    #Create an environment with the dependencies
+    conda create -n myenv gxx_linux-64 cmake zmq
+    conda activate myenv
+    cmake ../slsDetectorPackage -DCMAKE_PREFIX_PATH=$CONDA_PREFIX
+    make -j12
+
+
+Build this documentation
+-------------------------------
+
+The documentation for the slsDetectorPackage is build using a combination 
+of Doxygen, Sphinx and Breathe. The easiest way to install the dependencies
+is to use conda 
+
+.. code-block:: bash
+
+    conda create -n myenv python sphinx sphinx_rtd_theme

examples/jctb_moench03_T1.config

@@ -430,13 +430,13 @@ patwaittime2 0
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
-#0:udp_dstip 10.1.1.102
-0:udp_dstip 129.129.202.136
+0:udp_dstip 10.1.1.102
+#0:udp_dstip 129.129.202.136
 #############################################
 ### edit with any number in the subnet of your server (first 3 numbers as above)
 ############################################
-#0:udp_srcip 10.1.1.19
-0:udp_srcip 129.129.202.13
+0:udp_srcip 10.1.1.19
+#0:udp_srcip 129.129.202.13
 
 0:udp_dstport 33410
 #############################################
@@ -457,7 +457,7 @@ patwaittime2 0
 ############################################
 rx_hostname mpc2011
 
-tengiga 0
+tengiga 1
 
 rx_datastream 1
 rx_readfreq 1

examples/moench03_T1.config

@@ -1,11 +1,15 @@
-#initialchecks 0
+initialchecks 0
 #############################################
 ### edit with hostname or IP address of your detector 
 ############################################
 hostname bchip181+
 
+#############################################
+### edit with hostname or 1Gbs IP address of your server
+############################################
+rx_hostname mpc2011
 
-
+rx_tcpport 1954
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
@@ -14,24 +18,20 @@ udp_dstip 10.1.1.102
 ### edit with any number in the subnet of your server (first 3 numbers as above)
 ############################################
 udp_srcip 10.1.1.19
-udp_dstport 33410
+udp_dstport 32411
 
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
-#rx_zmqip 10.1.1.102
-#rx_zmqport 30001
+rx_zmqip 10.1.1.102
+rx_zmqport 50003
 #############################################
 ### edit with 1 Gbs IP of PC where you will run the GUI
 ############################################
-#zmqip 129.129.202.136
-#zmqport 40001
+zmqip 129.129.202.136
+zmqport 50001
 
 
-#############################################
-### edit with hostname or 1Gbs IP address of your server
-############################################
-rx_hostname mpc2011
 
 
 tengiga 1
@@ -39,8 +39,8 @@ rx_datastream 1
 
 
 
-frames 1
-period 0.001
+frames 100000
+period 0.0006
 #############################################
 ### edit with directory you want to write to
 ############################################
@@ -48,8 +48,8 @@ fpath /mnt/moench_data/scratch/
 fwrite 0
 rx_datastream 1
 
-rx_jsonpara frameMode newpedestal
-rx_jsonpara detectorMode analog
+rx_jsonpara frameMode frame
+rx_jsonpara detectorMode counting
 rx_discardpolicy discardpartial
 
 
@@ -58,4 +58,6 @@ adcpipeline 15
 powerchip 1
 vhighvoltage 90
 
-adcreg 14 40
+#adcreg 0x14 0x40
+
+

integrationTests/test-eigerIntegration.cpp

@@ -1,5 +1,5 @@
-#include "catch.hpp"
 #include "DetectorImpl.h"
+#include "catch.hpp"
 #include "string_utils.h"
 #include "tests/globals.h"
 #include <iostream>

integrationTests/test-integrationDectector.cpp

@@ -2,9 +2,9 @@
 #include "catch.hpp"
 
 #include "ClientSocket.h"
-#include "logger.h"
 #include "DetectorImpl.h"
 #include "Module.h"
+#include "logger.h"
 #include "sls_detector_defs.h"
 
 #include "Timer.h"
@@ -79,7 +79,6 @@ TEST_CASE("Set control port then create a new object with this control port",
     d.freeSharedMemory();
 }
 
-
 TEST_CASE("single EIGER detector no receiver basic set and get",
           "[.integration][eiger]") {
     // TODO! this test should take command line arguments for config
@@ -130,8 +129,6 @@ TEST_CASE("single EIGER detector no receiver basic set and get",
     d.freeSharedMemory();
 }
 
-
-
 TEST_CASE("Locking mechanism and last ip", "[.integration][.single]") {
     Module d(test::type);
     d.setHostname(test::hostname);
@@ -160,7 +157,6 @@ TEST_CASE("Set settings", "[.integration][.single]"){
     CHECK(d.setSettings(defs::STANDARD) == defs::STANDARD);
 }
 
-
 TEST_CASE("Timer functions", "[.integration][cli]") {
     // FRAME_NUMBER, /**< number of real time frames: total number of
     // acquisitions is number or frames*number of triggers */ ACQUISITION_TIME,
@@ -204,8 +200,7 @@ TEST_CASE("Timer functions", "[.integration][cli]") {
     if (test::type != dt::EIGER) {
         auto delay = 10000;
         d.setDelayAfterTrigger(delay);
-        CHECK(d.getDelayAfterTrigger() ==
-              delay);
+        CHECK(d.getDelayAfterTrigger() == delay);
     }
 
     auto triggers = 2;
@@ -221,7 +216,6 @@ TEST_CASE("Timer functions", "[.integration][cli]") {
     d.startAndReadAll();
 
     d.freeSharedMemory();
-
 }
 
 // TEST_CASE("Aquire", "[.integration][eiger]"){
@@ -382,8 +376,8 @@ TEST_CASE("Chiptestboard Loading Patterns", "[.ctbintegration]") {
     }
 }
 
-
-TEST_CASE("Chiptestboard Dbit offset, list, sampling, advinvert", "[.ctbintegration][dbit]") {
+TEST_CASE("Chiptestboard Dbit offset, list, sampling, advinvert",
+          "[.ctbintegration][dbit]") {
     SingleDetectorConfig c;
 
     // pick up multi detector from shm id 0
@@ -450,17 +444,20 @@ TEST_CASE("Chiptestboard Dbit offset, list, sampling, advinvert", "[.ctbintegrat
     m.setExternalSampling(1);
     CHECK(m.getExternalSampling() == 1);
     CHECK(m.readRegister(0x7b) == 0x1003E);
-    
 }
 
-TEST_CASE("Eiger or Jungfrau startingfnum", "[.eigerintegration][.jungfrauintegration][startingfnum]") {
+TEST_CASE("Eiger or Jungfrau startingfnum",
+          "[.eigerintegration][.jungfrauintegration][startingfnum]") {
     SingleDetectorConfig c;
 
     // pick up multi detector from shm id 0
     DetectorImpl m(0);
 
     // ensure ctb detector type, hostname and online
-    REQUIRE(((m.getDetectorTypeAsEnum() == slsDetectorDefs::detectorType::EIGER) || (m.getDetectorTypeAsEnum() == slsDetectorDefs::detectorType::JUNGFRAU)));
+    REQUIRE(
+        ((m.getDetectorTypeAsEnum() == slsDetectorDefs::detectorType::EIGER) ||
+         (m.getDetectorTypeAsEnum() ==
+          slsDetectorDefs::detectorType::JUNGFRAU)));
     REQUIRE(m.getHostname() == c.hostname);
 
     CHECK(m.setNumberOfFrames(1) == 1);
@@ -498,7 +495,8 @@ TEST_CASE("Eiger readnlines", "[.eigerintegration][readnlines]") {
     DetectorImpl m(0);
 
     // ensure detector type, hostname
-    REQUIRE((m.getDetectorTypeAsEnum() == slsDetectorDefs::detectorType::EIGER));
+    REQUIRE(
+        (m.getDetectorTypeAsEnum() == slsDetectorDefs::detectorType::EIGER));
     REQUIRE(m.getHostname() == c.hostname);
 
     m.setDynamicRange(16);

integrationTests/test-integrationMulti.cpp

@@ -1,5 +1,5 @@
-#include "catch.hpp"
 #include "DetectorImpl.h"
+#include "catch.hpp"
 #include "string_utils.h"
 #include "tests/globals.h"
 #include <iostream>
@@ -24,8 +24,6 @@ TEST_CASE("Initialize a multi detector", "[.integration][.multi]") {
     d.freeSharedMemory();
 }
 
-
-
 TEST_CASE("Set and read timers", "[.integration][.multi]") {
 
     DetectorImpl d(0, true, true);
@@ -57,7 +55,6 @@ TEST_CASE("Set and read timers", "[.integration][.multi]") {
     // PROGRESS, /**< fraction of measurement elapsed - only get! */
     // MEASUREMENTS_NUMBER,
 
-
     // FRAMES_FROM_START,
     // FRAMES_FROM_START_PG,
     // SAMPLES,
@@ -78,7 +75,6 @@ TEST_CASE("Set and read timers", "[.integration][.multi]") {
         CHECK(d.setSubFrameExposureDeadTime(-1) == Approx(subframe_deadtime));
     }
 
-    
     if (test::type == dt::EIGER) {
         // 32bit is needed for subframe exposure
         d.setDynamicRange(32);

python/scripts/generate_functions.py

@@ -18,7 +18,13 @@ fpath = "../../slsDetectorSoftware/src/Detector.cpp"
 
 
 parser = argparse.ArgumentParser()
-parser.add_argument("-p", "--build_path", help="Path to the build database", type = str, default=default_build_path)
+parser.add_argument(
+    "-p",
+    "--build_path",
+    help="Path to the build database",
+    type=str,
+    default=default_build_path,
+)
 cargs = parser.parse_args()
 
 db = cindex.CompilationDatabase.fromDirectory(cargs.build_path)
@@ -26,7 +32,7 @@ index = cindex.Index.create()
 args = db.getCompileCommands(fpath)
 args = list(iter(args).__next__().arguments)[0:-1]
 args = args + "-x c++ --std=c++11".split()
-syspath = system_include_paths('clang++')
+syspath = system_include_paths("clang++")
 incargs = ["-I" + inc for inc in syspath]
 args = args + incargs
 
@@ -39,6 +45,7 @@ ag = []
 
 lines = []
 
+ag2 = []
 
 def get_arguments(node):
     args = [a.type.spelling for a in node.get_arguments()]
@@ -46,9 +53,21 @@ def get_arguments(node):
         "py::arg() = Positions{}" if item == "sls::Positions" else "py::arg()"
         for item in args
     ]
-    args = ', '.join(args)
+    args = ", ".join(args)
     if args:
-        args = f', {args}'
+        args = f", {args}"
+    return args
+
+
+def get_fdec(node):
+    args = [a.type.spelling for a in node.get_arguments()]
+    if node.result_type.spelling:
+        return_type = node.result_type.spelling
+    else:
+        return_type = 'void'
+    
+    args = ", ".join(args)
+    args = f'({return_type}(Detector::*)({args}))'
     return args
 
 
@@ -62,23 +81,36 @@ def visit(node):
                 ):
                     m.append(child)
                     args = get_arguments(child)
-                    lines.append(f'.def(\"{child.spelling}\", &Detector::{child.spelling}{args})')
+                    fs = get_fdec(child)
+                    lines.append(
+                        f'.def("{child.spelling}",{fs} &Detector::{child.spelling}{args})'
+                    )
     for child in node.get_children():
         visit(child)
 
+        # .def("setRxHostname",
+        #      (void (Detector::*)(const std::string &, Positions)) &
+        #          Detector::setRxHostname,
+        #      py::arg(), py::arg() = Positions{})
+        # .def("setRxHostname",
+        #      (void (Detector::*)(const std::vector<std::string> &)) &
+        #          Detector::setRxHostname,
+        #      py::arg())
+
 
 visit(tu.cursor)
 
 
-with open('../src/detector_in.cpp') as f:
+with open("../src/detector_in.cpp") as f:
     data = f.read()
-s = ''.join(lines)
-s += ';'
-text = data.replace('[[FUNCTIONS]]', s)
-warning = '/* WARINING This file is auto generated any edits might be overwritten without warning */\n\n'
-with open('../src/detector.cpp', 'w') as f:
+s = "".join(lines)
+s += ";"
+text = data.replace("[[FUNCTIONS]]", s)
+warning = "/* WARINING This file is auto generated any edits might be overwritten without warning */\n\n"
+with open("../src/detector.cpp", "w") as f:
     f.write(warning)
     f.write(text)
 
 # run clang format on the output
-subprocess.run(['clang-format', '../src/detector.cpp', '-i'])
+subprocess.run(["clang-format", "../src/detector.cpp", "-i"])
+

python/setup.py

@@ -45,7 +45,7 @@ ext_modules = [
             # get_pybind_include(),
             # get_pybind_include(user=True),
             os.path.join('../libs/pybind11/include'),
-            os.path.join(get_conda_path(), 'include/slsDetectorPackage'),
+            os.path.join(get_conda_path(), 'include'),
 
         ],
         libraries=['SlsDetector', 'SlsReceiver', 'zmq'],

python/slsdet/detector.py

@@ -1,5 +1,6 @@
 from _slsdet import CppDetectorApi
 from _slsdet import slsDetectorDefs
+from _slsdet import IpAddr, MacAddr
 
 runStatus = slsDetectorDefs.runStatus
 speedLevel = slsDetectorDefs.speedLevel
@@ -12,12 +13,13 @@ import datetime as dt
 
 from functools import wraps
 from collections import namedtuple
+import socket
 
 def freeze(cls):
     cls._frozen = False
 
     def frozensetattr(self, key, value):
-        if self._frozen and not hasattr(self, key):
+        if self._frozen and not key in dir(self):
             raise AttributeError(
                 "Class {} is frozen. Cannot set {} = {}".format(
                     cls.__name__, key, value
@@ -58,7 +60,6 @@ class Detector(CppDetectorApi):
         self._adc_register = Adc_register(self)
 
 
-
     # CONFIGURATION
     def __len__(self):
         return self.size()
@@ -71,9 +72,6 @@ class Detector(CppDetectorApi):
     def free(self):
         self.freeSharedMemory()
 
-
-
-
     @property
     def config(self):
         return NotImplementedError("config is set only")
@@ -92,6 +90,7 @@ class Detector(CppDetectorApi):
 
     @property
     def hostname(self):
+        print('getting host!')
         return self.getHostname()
 
     @hostname.setter
@@ -161,6 +160,13 @@ class Detector(CppDetectorApi):
     def frames(self, n_frames):
         self.setNumberOfFrames(n_frames)
 
+    @property
+    def triggers(self):
+        return element_if_equal(self.getNumberOfTriggers())
+
+    @triggers.setter
+    def triggers(self, n_triggers):
+        self.setNumberOfTriggers(n_triggers)
 
     @property
     def exptime(self):
@@ -422,7 +428,9 @@ class Detector(CppDetectorApi):
 
     @udp_dstip.setter
     def udp_dstip(self, ip):
-        self.getDestinationUDPIP(ip)
+        if ip == 'auto':
+            ip = socket.gethostbyname(self.rx_hostname)
+        self.setDestinationUDPIP(IpAddr(ip))
 
     @property
     def udp_dstip2(self):
@@ -430,7 +438,9 @@ class Detector(CppDetectorApi):
 
     @udp_dstip2.setter
     def udp_dstip2(self, ip):
-        self.getDestinationUDPIP2(ip)
+        if ip == 'auto':
+            ip = socket.gethostbyname(self.rx_hostname)
+        self.setDestinationUDPIP2(IpAddr(ip))
 
     @property
     def udp_dstmac(self):
@@ -438,7 +448,7 @@ class Detector(CppDetectorApi):
 
     @udp_dstmac.setter
     def udp_dstmac(self, mac):
-        self.getDestinationUDPMAC2(mac)
+        self.setDestinationUDPMAC(MacAddr(mac))
 
     @property
     def udp_dstmac2(self):
@@ -446,7 +456,7 @@ class Detector(CppDetectorApi):
 
     @udp_dstmac2.setter
     def udp_dstmac2(self, mac):
-        self.getDestinationUDPMAC2(mac)
+        self.setDestinationUDPMAC2(MacAddr(mac))
 
 
     @property
@@ -455,7 +465,7 @@ class Detector(CppDetectorApi):
 
     @udp_srcip.setter
     def udp_srcip(self, ip):
-        self.setSourceUDPIP(ip)
+        self.setSourceUDPIP(IpAddr(ip))
 
     @property
     def udp_srcip2(self):
@@ -487,7 +497,7 @@ class Detector(CppDetectorApi):
 
     @src_udpmac.setter
     def src_udpmac(self, mac):
-        self.setSourceUDPMAC(mac)
+        self.setSourceUDPMAC(MacAddr(mac))
 
     @property
     def src_udpip2(self):
@@ -495,7 +505,7 @@ class Detector(CppDetectorApi):
 
     @src_udpip2.setter
     def src_udpip2(self, ip):
-        self.setSourceUDPIP(ip)
+        self.setSourceUDPIP(IpAddr(ip))
 
     @property
     def src_udpip(self):
@@ -503,7 +513,7 @@ class Detector(CppDetectorApi):
 
     @src_udpip.setter
     def src_udpip(self, ip):
-        self.setSourceUDPIP(ip)
+        self.setSourceUDPIP(IpAddr(ip))
 
 
     @property
@@ -512,7 +522,7 @@ class Detector(CppDetectorApi):
 
     @src_udpmac2.setter
     def src_udpmac2(self, mac):
-        self.setSourceUDPMAC2(mac)
+        self.setSourceUDPMAC2(MacAddr(mac))
 
     @property
     def vhighvoltage(self):

python/src/detector_in.cpp

@@ -12,6 +12,8 @@ namespace py = pybind11;
 void init_det(py::module &m) {
     using sls::Detector;
     using sls::Positions;
+    using sls::Result;
+    using sls::defs;
     
     py::class_<Detector> CppDetectorApi(m, "CppDetectorApi");
     CppDetectorApi

python/src/enums.cpp

@@ -184,6 +184,11 @@ void init_enums(py::module &m) {
         .value("VB_PIXBUF", slsDetectorDefs::dacIndex::VB_PIXBUF)
         .value("VIN_COM", slsDetectorDefs::dacIndex::VIN_COM)
         .value("VDD_PROT", slsDetectorDefs::dacIndex::VDD_PROT)
+        .value("VBP_COLBUF", slsDetectorDefs::dacIndex::VBP_COLBUF)
+        .value("VB_SDA", slsDetectorDefs::dacIndex::VB_SDA)
+        .value("VCASC_SFP", slsDetectorDefs::dacIndex::VCASC_SFP)
+        .value("VIPRE_CDS", slsDetectorDefs::dacIndex::VIPRE_CDS)
+        .value("IBIAS_SFP", slsDetectorDefs::dacIndex::IBIAS_SFP)
         .value("V_POWER_A", slsDetectorDefs::dacIndex::V_POWER_A)
         .value("V_POWER_B", slsDetectorDefs::dacIndex::V_POWER_B)
         .value("V_POWER_C", slsDetectorDefs::dacIndex::V_POWER_C)
@@ -224,6 +229,18 @@ void init_enums(py::module &m) {
         .value("FORCESWITCHG2",
                slsDetectorDefs::detectorSettings::FORCESWITCHG2)
         .value("VERYLOWGAIN", slsDetectorDefs::detectorSettings::VERYLOWGAIN)
+        .value("G1_HIGHGAIN", slsDetectorDefs::detectorSettings::G1_HIGHGAIN)
+        .value("G1_LOWGAIN", slsDetectorDefs::detectorSettings::G1_LOWGAIN)
+        .value("G2_HIGHCAP_HIGHGAIN",
+               slsDetectorDefs::detectorSettings::G2_HIGHCAP_HIGHGAIN)
+        .value("G2_HIGHCAP_LOWGAIN",
+               slsDetectorDefs::detectorSettings::G2_HIGHCAP_LOWGAIN)
+        .value("G2_LOWCAP_HIGHGAIN",
+               slsDetectorDefs::detectorSettings::G2_LOWCAP_HIGHGAIN)
+        .value("G2_LOWCAP_LOWGAIN",
+               slsDetectorDefs::detectorSettings::G2_LOWCAP_LOWGAIN)
+        .value("G4_HIGHGAIN", slsDetectorDefs::detectorSettings::G4_HIGHGAIN)
+        .value("G4_LOWGAIN", slsDetectorDefs::detectorSettings::G4_LOWGAIN)
         .value("UNDEFINED", slsDetectorDefs::detectorSettings::UNDEFINED)
         .value("UNINITIALIZED",
                slsDetectorDefs::detectorSettings::UNINITIALIZED)

python/src/network.cpp

@@ -15,10 +15,11 @@ using sls::IpAddr;
 using sls::MacAddr;
 void init_network(py::module &m) {
 
-    py::class_ <IpAddr> IpAddr(m, "IpAddr");
-    IpAddr.def(py::init())
+    py::class_ <IpAddr>(m, "IpAddr")
+    .def(py::init())
     .def(py::init<const std::string&>())
     .def(py::init<uint32_t>())
+    .def(py::init<const IpAddr&>())
     .def("hex", &IpAddr::hex)
     .def("uint32", &IpAddr::uint32)
     .def(py::self == py::self)
@@ -26,10 +27,11 @@ void init_network(py::module &m) {
     .def("str", &IpAddr::str);
 
 
-    py::class_ <MacAddr> MacAddr(m, "MacAddr");
-    MacAddr.def(py::init())
+    py::class_ <MacAddr>(m, "MacAddr")
+    .def(py::init())
     .def(py::init<const std::string&>())
     .def(py::init<uint64_t>())
+    .def(py::init<const MacAddr&>())
     .def("hex", &MacAddr::hex)
     .def(py::self == py::self)
     .def("uint64", &MacAddr::uint64)

slsDetectorCalibration/MovingStat.h

@@ -14,8 +14,8 @@ class MovingStat
       /** constructor
 	  \param nn number of samples  parameter to be used
       */
-      MovingStat(int nn=1000) : n(nn), m_n(0) {}
-
+    MovingStat(int nn) : n(nn), m_n(0), m_newM(0),m_newM2(0)  {}
+      //  void setPointers(double *me, double *va) {mean=me; var=va;}
 	/**
 	   clears the moving average number of samples parameter, mean and standard deviation
 	*/
@@ -31,10 +31,10 @@ class MovingStat
 	*/
         void Set(double val, double rms=0, int m=-1)
         {
-	  if (m>0) m_n = m;  else m_n = n; 
+	  if (m>=0) m_n = m;  else m_n = n; 
 	  m_newM=val*m_n; 
-	  // cout << "set " << val << " " << m << " " << m_n << " " << m_newM << endl;
 	  SetRMS(rms);
+	  // cout << "set " << val << " " << m << " " << m_n << " " << m_newM << endl;
         }
 	/**
 	   clears the moving average number of samples parameter, mean and standard deviation
@@ -42,12 +42,15 @@ class MovingStat
         void SetRMS(double rms)
         {
 	  if (rms<=0) {
-	    m_newM2=m_newM*m_newM/n;
+	    if (m_n>0)
+	      m_newM2=m_newM*m_newM/m_n;
+	    else
+	      m_newM2=0;
 	    //m_n=0;
 	  } else {
-	    if (m_n>0)
+	    if (m_n>0) {
 	      m_newM2=(m_n*rms*rms+m_newM*m_newM/m_n);
-	    else {
+	    } else {
 	      m_newM2=(m_n*rms*rms+m_newM*m_newM/n);
 	      m_n=0;
 	    }
@@ -102,7 +105,8 @@ class MovingStat
 	      m_newM = x;
 	      m_newM2 = x*x;
 	      m_n++;
-            }             else             {
+            }             
+	  else             {
 	    m_newM = m_newM + x - m_newM/m_n;
 	    m_newM2 = m_newM2 + x*x - m_newM2/m_n;
 	  }
@@ -122,6 +126,8 @@ class MovingStat
         inline double Mean() const
         {
 	  //  cout << "get " <<  m_n << " " << m_newM << " " << m_newM/m_n << endl;
+	 
+	  
 	    return (m_n > 0) ? m_newM/m_n : 0.0;
         }
 
@@ -138,7 +144,7 @@ class MovingStat
 	 */
         inline double Variance() const
         {
-	  return ( (m_n > 1) ? (M2()-Mean()*Mean()) : 0.0 );
+	  return (m_n > 0) ? m_newM2/m_n-m_newM/m_n*m_newM/m_n : 0.0;
         }
 
 	/** returns the standard deviation, 0 if no elements are inside
@@ -146,7 +152,8 @@ class MovingStat
 	 */
         inline double StandardDeviation() const
         {
-	  return ( (Variance() > 0) ? sqrt( Variance() ) : -1 );
+	  
+	  return sqrt(Variance());//
         }
 
     private:

slsDetectorCalibration/analogDetector.h

@@ -68,10 +68,15 @@ template <class dataType> class analogDetector {
       det->getDetectorSize(nx,ny);
     
     stat=new pedestalSubtraction*[ny];
+    /* pedMean=new double*[ny]; */
+    /* pedVariance=new double*[ny]; */
     for (int i=0; i<ny; i++) {
       stat[i]=new pedestalSubtraction[nx];
-      for (int ix=0; ix<nx; ix++) {
+      /* pedMean[i]=new double[nx]; */
+      /* pedVariance[i]=new double[nx]; */
+      for (ix=0; ix<nx; ++ix) {
 	stat[i][ix].SetNPedestals(nped);
+	/* stat[i][ix].setPointers(&(pedMean[iy][ix]),&(pedVariance[iy][ix])); */
       }
     }
     image=new int[nx*ny];
@@ -95,7 +100,16 @@ template <class dataType> class analogDetector {
   /**
      destructor. Deletes the pdestalSubtraction array and the image
   */
-  virtual ~analogDetector() {for (int i=0; i<ny; i++) delete [] stat[i]; delete [] stat; delete [] image;
+  virtual ~analogDetector() {
+    for (int i=0; i<ny; i++) {
+      delete [] stat[i]; 
+      /* delete [] pedMean[i];  */
+      /* delete [] pedVariance[i]; */
+    }; 
+    /* delete [] pedMean;  */
+    /* delete [] pedVariance; */ 
+    delete [] stat; 
+    delete [] image;
 #ifdef ROOTSPECTRUM
     delete hs;
 #ifdef ROOTCLUST
@@ -132,16 +146,23 @@ template <class dataType> class analogDetector {
     
 
     stat=new pedestalSubtraction*[ny];
+    /* pedMean=new double*[ny]; */
+    /* pedVariance=new double*[ny]; */
     for (int i=0; i<ny; i++) {
       stat[i]=new pedestalSubtraction[nx];
+      /* pedMean[i]=new double[nx]; */
+      /* pedVariance[i]=new double[nx]; */
     }
     
     int nped=orig->SetNPedestals();
     //cout << nped << " " << orig->getPedestal(ix,iy) << orig->getPedestalRMS(ix,iy) << endl;
-    for (int iy=0; iy<ny; iy++) {
-      for (int ix=0; ix<nx; ix++) {
+    for (iy=0; iy<ny; ++iy) {
+      for (ix=0; ix<nx; ++ix) {
+	//stat[iy][ix].setPointers(&(pedMean[iy][ix]),&(pedVariance[iy][ix]));
 	stat[iy][ix].SetNPedestals(nped);
 	setPedestal(ix,iy,orig->getPedestal(ix,iy),orig->getPedestalRMS(ix,iy),orig->GetNPedestals(ix,iy));
+	/* if (ix==50 && iy==50)  */
+	/*   cout << "clone ped " <<  " " << ix << " " << iy << " " << getPedestal(ix,iy) << " " << getPedestalRMS(ix,iy)<< " " << GetNPedestals(ix,iy) << endl; */
       }
     }
     image=new int[nx*ny];
@@ -199,7 +220,7 @@ template <class dataType> class analogDetector {
      \param nns reference to number of subpixels for interpolating detector, will always be 1 in this case
      \returns number of pixels of the detector image
    */
-  virtual int getImageSize(int &nnx, int &nny, int &nns){nnx=nx; nny=ny; nns=1; return nx*ny;}; 
+  virtual int getImageSize(int &nnx, int &nny, int &nnsx, int &nnsy){nnx=nx; nny=ny; nnsx=1; nnsy=1; return nx*ny;}; 
  /**
      Returns data size of the detector image matrix
      \param nnx reference to pixel size in x
@@ -231,8 +252,8 @@ template <class dataType> class analogDetector {
     if (gm) {
       if (gmap) delete [] gmap; 
       gmap=new double[nnx*nny];
-      for (int iy=0; iy<nny; iy++) {
-	for (int ix=0; ix<nnx; ix++) {
+      for (iy=0; iy<nny; ++iy) {
+	for (ix=0; ix<nnx; ++ix) {
 	  gmap[iy*nnx+ix]=gm[iy*nnx+ix];
 	  // cout << gmap[iy*nnx+ix] << " " ;
 	}
@@ -251,8 +272,8 @@ template <class dataType> class analogDetector {
     void *ret;
     if (gmap)  {
       gm=new float[nx*ny];
-	for (int iy=0; iy<ny; iy++) {
-      for (int ix=0; ix<nx; ix++) {
+      for (iy=0; iy<ny; ++iy) {
+	for (ix=0; ix<nx; ++ix) {
 	  gm[iy*nx+ix]=gmap[iy*nx+ix];
 	}
       }
@@ -267,8 +288,8 @@ template <class dataType> class analogDetector {
     
   virtual void newDataSet(){
     iframe=-1; 
-    for (int iy=0; iy<ny; iy++) 
-      for (int ix=0; ix<nx; ix++) {
+    for (iy=0; iy<ny; ++iy) 
+      for (ix=0; ix<nx; ++ix) {
 	stat[iy][ix].Clear(); 
 	image[iy*nx+ix]=0;
       }
@@ -285,12 +306,14 @@ template <class dataType> class analogDetector {
   };  
   
   /** resets the commonModeSubtraction and increases the frame index */
-  virtual void newFrame(){iframe++; if (cmSub) cmSub->newFrame();};
+  virtual void newFrame(){iframe++; if (cmSub) cmSub->newFrame(); det->newFrame();};
 
   /** resets the commonModeSubtraction and increases the frame index */
   virtual void newFrame(char *data){
     iframe++; 
     if (cmSub) cmSub->newFrame(); 
+    det->newFrame();
+    // det->getData(data);
     calcGhost(data); 
     //    cout << getId() << " Calc ghost " <<  getGhost(15,15) << endl;
   };
@@ -359,8 +382,8 @@ template <class dataType> class analogDetector {
       // cout << "+"<< getId() << endl;
       if (cmSub) {
 	//cout << "*" << endl;
-	  for (int iy=ymin; iy<ymax; iy++) { 
-	for (int ix=xmin; ix<xmax; ix++) {
+	for (iy=ymin; iy<ymax; ++iy) { 
+	  for (ix=xmin; ix<xmax; ++ix) {
 	    // if (getNumpedestals(ix,iy)>0) 
 	  //  if (det->isGood(ix,iy)) {
 	      addToCommonMode(data, ix, iy);
@@ -403,8 +426,10 @@ template <class dataType> class analogDetector {
       if (ix>=0 && ix<nx && iy>=0 && iy<ny) {
 	if (cmSub && cm>0) {
 	  return stat[iy][ix].getPedestal()+getCommonMode(ix,iy); 
-	  
-	}     	else return stat[iy][ix].getPedestal(); 
+	  //return pedMean[iy][ix]+getCommonMode(ix,iy); 
+	} 
+	//return pedMean[iy][ix];
+	return stat[iy][ix].getPedestal(); 
       } else return -1;
     };
 
@@ -422,8 +447,8 @@ template <class dataType> class analogDetector {
 	  g=gmap[iy*nx+ix];
 	  if (g==0) g=-1.;
 	}
-      
-	return stat[iy][ix].getPedestalRMS();//divide by gain?
+	//	return sqrt(pedVariance[iy][ix])/g;
+	return stat[iy][ix].getPedestalRMS()/g;//divide by gain?
       }
       return -1;
     };
@@ -441,10 +466,11 @@ template <class dataType> class analogDetector {
        \returns pedestal value
     */
     virtual double* getPedestal(double *ped){
-      if (ped==NULL)
+      if (ped==NULL) {
 	ped=new double[nx*ny];
-      for (int iy=0; iy<ny; iy++) {
-	for (int ix=0; ix<nx; ix++) {
+      }
+      for (iy=0; iy<ny; ++iy) {
+	for (ix=0; ix<nx; ++ix) {
 	  ped[iy*nx+ix]=stat[iy][ix].getPedestal();
 	    //cout << ped[iy*nx+ix] << " " ;
 	}
@@ -459,10 +485,11 @@ template <class dataType> class analogDetector {
        \returns pedestal rms
     */
     virtual double* getPedestalRMS(double *ped=NULL){
-      if (ped==NULL)
+      if (ped==NULL) {
 	ped=new double[nx*ny];
-	for (int iy=0; iy<ny; iy++) {
-      for (int ix=0; ix<nx; ix++) {
+      }
+      for (iy=0; iy<ny; ++iy) {
+	for (ix=0; ix<nx; ++ix) {
 	  ped[iy*nx+ix]=stat[iy][ix].getPedestalRMS();
 	}
       }
@@ -501,8 +528,8 @@ template <class dataType> class analogDetector {
     */
     virtual void setPedestal(double *ped, double *rms=NULL, int m=-1){
       double rr=0;
-      for (int iy=ymin; iy<ymax; iy++) {
-	for (int ix=xmin; ix<xmax; ix++) {
+      for (iy=ymin; iy<ymax; ++iy) {
+	for (ix=xmin; ix<xmax; ++ix) {
 	  if (rms) rr=rms[iy*nx+ix];
 	  stat[iy][ix].setPedestal(ped[iy*nx+ix],rr, m);
 	  //  cout << ix << " " << iy << " " << ped[iy*nx+ix] << " " << stat[iy][ix].getPedestal() << endl;
@@ -531,8 +558,8 @@ template <class dataType> class analogDetector {
        \param rms pointer to array of pedestal rms
     */
  virtual void setPedestalRMS(double *rms){
-	for (int iy=ymin; iy<ymax; iy++) {
-      for (int ix=xmin; ix<xmax; ix++) {
+   for (iy=ymin; iy<ymax; ++iy) {
+     for (ix=xmin; ix<xmax; ++ix) {
 	  stat[iy][ix].setPedestalRMS(rms[iy*nx+ix]);
 	};
       };
@@ -572,8 +599,8 @@ template <class dataType> class analogDetector {
 
 #endif
       gm=new float[nx*ny];
-	for (int iy=0; iy<ny; iy++) {
-      for (int ix=0; ix<nx; ix++) {
+      for (iy=0; iy<ny; ++iy) {
+	for (ix=0; ix<nx; ++ix) {
 	    gm[iy*nx+ix]=image[iy*nx+ix];
 #ifdef ROOTSPECTRUM
 	    hmap->SetBinContent(ix+1, iy+1,image[iy*nx+ix]);
@@ -620,8 +647,8 @@ template <class dataType> class analogDetector {
       TH2F *hmap=new TH2F("hmap","hmap",nx, -0.5,nx-0.5, ny, -0.5, ny-0.5);
 
 #endif
-      for (int iy=0; iy<ny; iy++) {
-    for (int ix=0; ix<nx; ix++) {
+      for (iy=0; iy<ny; ++iy) {
+	for (ix=0; ix<nx; ++ix) {
 	/* if (cmSub)  */
 	/*     gm[iy*nx+ix]=stat[iy][ix].getPedestal()-cmSub->getCommonMode(); */
 	/* else */
@@ -667,15 +694,15 @@ template <class dataType> class analogDetector {
 
 
     if (gm) {
-	for (int iy=0; iy<nny; iy++) {
-      for (int ix=0; ix<nnx; ix++) {
+      for (iy=0; iy<nny; ++iy) {
+	for (ix=0; ix<nnx; ++ix) {
 	  stat[iy][ix].setPedestal(gm[iy*nx+ix],-1,-1);
 	}
       }
       delete [] gm;
       return 1;
     }
-    return NULL;
+    return 0;
   }
   
  /**
@@ -692,15 +719,15 @@ template <class dataType> class analogDetector {
 
 
     if (gm) {
-	for (int iy=0; iy<nny; iy++) {
-      for (int ix=0; ix<nnx; ix++) {
+      for (iy=0; iy<nny; ++iy) {
+	for (ix=0; ix<nnx; ++ix) {
 	  image[iy*nx+ix]=gm[iy*nx+ix];
 	}
       }
       delete [] gm;
       return 1;
     }
-    return NULL;
+    return 0;
   }
   
    
@@ -718,8 +745,8 @@ template <class dataType> class analogDetector {
     float *gm=NULL;
     void *ret;
       gm=new float[nx*ny];
-	for (int iy=0; iy<ny; iy++) {
-      for (int ix=0; ix<nx; ix++) {
+      for (iy=0; iy<ny; ++iy) {
+	for (ix=0; ix<nx; ++ix) {
 	  gm[iy*nx+ix]=stat[iy][ix].getPedestalRMS();
 	}
       }
@@ -740,8 +767,8 @@ template <class dataType> class analogDetector {
     if (nnx>nx) nnx=nx;
     if (nny>ny) nny=ny;
     if (gm) {
-	for (int iy=0; iy<nny; iy++) {
-      for (int ix=0; ix<nnx; ix++) {
+      for (iy=0; iy<nny; ++iy) {
+	for (ix=0; ix<nnx; ++ix) {
 	  stat[iy][ix].setPedestalRMS(gm[iy*nx+ix]);
 	}
       }
@@ -777,11 +804,13 @@ template <class dataType> class analogDetector {
             
       //cout << xmin << " " << xmax << endl;
       // cout << ymin << " " << ymax << endl;
-      for (int iy=ymin; iy<ymax; iy++) {
-	for (int ix=xmin; ix<xmax; ix++) {
+      for (iy=ymin; iy<ymax; ++iy) {
+	for (ix=xmin; ix<xmax; ++ix) {
 	  if (det->isGood(ix,iy)) {
 	    // addToPedestal(data,ix,iy,1);
 	    addToPedestal(data,ix,iy,cm);
+	/* if (ix==50 && iy==50) */
+	/*   cout<< "*ped* " << id << " " << ix << " " << iy << " " << det->getChannel(data,ix,iy) << " " << stat[iy][ix].getPedestal() << " " <<  stat[iy][ix].getPedestalRMS() <<" " << stat[iy][ix]. GetNPedestals() << endl; */
 	  //if (ix==10 && iy==10) 
 	  // cout <<ix << " " << iy << " " << getPedestal(ix,iy)<< endl;
 #ifdef ROOTSPECTRUM 
@@ -905,8 +934,8 @@ template <class dataType> class analogDetector {
       
       //calcGhost(data);
 
-      for (int iy=ymin; iy<ymax; iy++) {
-	for (int ix=xmin; ix<xmax; ix++) {
+      for (iy=ymin; iy<ymax; ++iy) {
+	for (ix=xmin; ix<xmax; ++ix) {
 	  if (det->isGood(ix,iy))
 	    val[iy*nx+ix]+=subtractPedestal(data, ix, iy,cm);
 	}
@@ -952,8 +981,8 @@ template <class dataType> class analogDetector {
 	hs->Fill(val,(iy-ymin)*(xmax-xmin)+(ix-xmin));
 #ifdef ROOTCLUST
 	double v3=0,v5=0,v7=0,v9=0;
-	for (int iix=-4; iix<5; iix++)
-	  for (int iiy=-4; iiy<5; iiy++) {
+	for (int iix=-4; iix<5; i++ix)
+	  for (int iiy=-4; iiy<5; i++iy) {
 	    if (det)
 	      val= (dataSign*det->getValue(data, ix+iix, iy+iiy)-getPedestal(ix+iix,iy+iiy,cm))/g;
 	    else
@@ -1047,8 +1076,8 @@ template <class dataType> class analogDetector {
 
        //calcGhost(data);
        addToCommonMode(data);
-       for (int iy=ymin; iy<ymax; iy++) {
-	 for (int ix=xmin; ix<xmax; ix++) {
+       for (iy=ymin; iy<ymax; ++iy) {
+	 for (ix=xmin; ix<xmax; ++ix) {
 	   if (det->isGood(ix,iy))
 	     nph[iy*nx+ix]+=getNPhotons(data, ix, iy);
 	 }
@@ -1062,8 +1091,8 @@ template <class dataType> class analogDetector {
      
     */
    virtual void clearImage(){  
-       for (int iy=0; iy<ny; iy++) { 
-     for (int ix=0; ix<nx; ix++) {
+       for (iy=0; iy<ny; ++iy) { 
+     for (ix=0; ix<nx; ++ix) {
 	 image[iy*nx+ix]=0;
        }
      }
@@ -1093,8 +1122,8 @@ template <class dataType> class analogDetector {
     int SetNPedestals(int i=-1) {
       int ix=0, iy=0; 
       if (i>0) 
-	  for (iy=0; iy<ny; iy++) 
-	for (ix=0; ix<nx; ix++) 
+	  for (iy=0; iy<ny; ++iy) 
+	for (ix=0; ix<nx; ++ix) 
 	    stat[iy][ix].SetNPedestals(i); 
       return stat[0][0].SetNPedestals();
     };
@@ -1129,8 +1158,8 @@ template <class dataType> class analogDetector {
       newFrame(data);
       //calcGhost(data);
       addToCommonMode(data);
-      for (int iy=ymi; iy<yma; iy++)
-	for (int ix=xmi; ix<xma; ix++)
+      for (iy=ymi; iy<yma; ++iy)
+	for (ix=xmi; ix<xma; ++ix)
 	  if (det->isGood(ix,iy)) {
 	    if (ix>=0 && ix<nx && iy>=0 && iy<ny) 
 	      val+=getNPhotons(data, ix, iy);
@@ -1233,6 +1262,8 @@ FILE *getFilePointer(){return myFile;};
     int nx; /**< Size of the detector in x direction */
     int ny; /**< Size of the detector in y direction */
     pedestalSubtraction **stat; /**< pedestalSubtraction class */
+    /* double **pedMean; /\**< pedestalSubtraction class *\/ */
+    /* double **pedVariance; /\**< pedestalSubtraction class *\/ */
     commonModeSubtraction *cmSub;/**< commonModeSubtraction class */
     int dataSign; /**< sign of the data i.e. 1 if photon is positive, -1 if negative */
     int iframe;  /**< frame number (not from file but incremented within the dataset every time newFrame is called */
@@ -1250,6 +1281,7 @@ FILE *getFilePointer(){return myFile;};
     frameMode fMode; /**< current detector frame mode */
     detectorMode dMode; /**< current detector frame mode */
     FILE *myFile; /**< file pointer to write to */
+    int ix, iy;
 #ifdef ROOTSPECTRUM
     TH2F *hs;
 #ifdef ROOTCLUST

slsDetectorCalibration/dataStructures/moench04CtbZmq10GbData.h

@@ -44,6 +44,28 @@ class moench04CtbZmq10GbData : public slsDetectorData<uint16_t> {
 
     int adc_nr[32]={9, 8,11,10,13,12,15,14,1,0,3,2,5,4,7,6,23,22,21,20,19,18,17,16,31,30,29,28,27,26,25,24 };
 
+    /* 
+       iadc=ptr%32
+       isample=ptr/32
+
+       col=(adc_nr[iadc]%16)*25+isample%25
+       if (adc_nr[iadc]<16)
+       row=199-isample/25;
+       else
+       row=200+isample/25
+
+
+       adc0 col(9*25..10*25-1) row(199..0)
+       adc1 col(8*25..9*25-1)  row(199..0)
+       adc2 col(11*25..12*25-1) row(199..0)
+       adc3 col(10*25..11*25-1) row(199..0)
+       adc4 col(13*25..14*25-1) row(199..0)
+       adc5 col(12*25..13*25-1) row(199..0)
+       adc6 col(15*25..16*25-1) row(199..0)
+       adc7 col(14*25..15*25-1) row(199..0)
+       adc8 col(1*25..2*25-1) row(199..0)
+     */
+
     int row, col;
 
     //int isample;
@@ -134,7 +156,7 @@ class moench04CtbZmq10GbData : public slsDetectorData<uint16_t> {
     if (dSamples>isample) {
       ptr=data+32*(isample+1)+8*isample;
       sample=*((uint64_t*)ptr);
-    cout << isc << " " << ibit[isc] << " " << isample << hex << sample << dec << endl;
+      // cout << isc << " " << ibit[isc] << " " << isample << hex << sample << dec << endl;
     if (sample & (1<<ibit[isc]))
       return 1;
     else

slsDetectorCalibration/dataStructures/moench04CtbZmqData.h

@@ -120,7 +120,7 @@ class moench04CtbZmqData : public slsDetectorData<uint16_t> {
     if (dSamples>isample) {
       ptr=data+aoff+8*isample;
       sample=*((uint64_t*)ptr);
-    cout << isc << " " << ibit[isc] << " " << isample << hex << sample << dec << endl;
+      // cout << isc << " " << ibit[isc] << " " << isample << hex << sample << dec << endl;
     if (sample & (1<<ibit[isc]))
       return 1;
     else

slsDetectorCalibration/dataStructures/slsDetectorData.h

@@ -20,6 +20,8 @@ class slsDetectorData {
   int **dataROIMask; /**< Array of size nx*ny 1 if channel is good (or in the ROI), 0 if bad channel (or out of ROI)   */
   int *xmap;
   int *ymap;
+  dataType **orderedData; 
+  int isOrdered;
   
  public:
   
@@ -37,35 +39,29 @@ class slsDetectorData {
   \param dROI Array of size nx*ny. The elements are 1s if the channel is good or in the ROI, 0 is bad or out of the ROI. NULL (default) means all 1s. 
   
   */
- slsDetectorData(int npx, int npy, int dsize, int **dMap=NULL, dataType **dMask=NULL, int **dROI=NULL): nx(npx), ny(npy), dataSize(dsize) {
+ slsDetectorData(int npx, int npy, int dsize, int **dMap=NULL, dataType **dMask=NULL, int **dROI=NULL): nx(npx), ny(npy), dataSize(dsize), orderedData(NULL), isOrdered(0) {
+    
+   int el=dsize/sizeof(dataType);
+    xmap=new int[el];
+    ymap=new int[el];
     
 
-    xmap=new int[dsize/sizeof(dataType)];
-    ymap=new int[dsize/sizeof(dataType)];
     
-
-    //  if (dataMask==NULL) {
-    dataMask=new dataType*[ny];
-    for(int i = 0; i < ny; i++) {
-      dataMask[i] = new dataType[nx];
-    }
-    // }
-    
-    // if (dataMap==NULL) {
+    orderedData=new dataType*[ny];
     dataMap=new int*[ny];
-    for(int i = 0; i < ny; i++) {
-      dataMap[i] = new int[nx];
-      }
-    // }
-    // if (dataROIMask==NULL) {
+    dataMask=new dataType*[ny];
     dataROIMask=new int*[ny];
     for(int i = 0; i < ny; i++) {
+      dataMap[i] = new int[nx];
+      orderedData[i]=new dataType[nx];
+      dataMask[i] = new dataType[nx];
       dataROIMask[i] = new int[nx];
       for (int j=0; j<nx; j++)
 	dataROIMask[i][j]=1;
+    
     }    
-    // }
-    for (int ip=0; ip<dsize/sizeof(dataType); ip++){
+  
+    for (int ip=0; ip<el; ip++){
       xmap[ip]=-1;
       ymap[ip]=-1;
       }
@@ -74,22 +70,24 @@ class slsDetectorData {
     setDataMask(dMask);
     setDataROIMask(dROI);
     
-  };
+  }
   
   virtual ~slsDetectorData() {
     for(int i = 0; i < ny; i++) {
       delete [] dataMap[i];
       delete [] dataMask[i];
       delete [] dataROIMask[i];
+      delete [] orderedData[i];
     }
     delete [] dataMap;
     delete [] dataMask;
     delete [] dataROIMask;
+    delete [] orderedData;
     delete [] xmap;
     delete [] ymap;
   };
   
-  
+  virtual int getPointer(int ix,int iy) {return dataMap[iy][ix];};
   /**
      defines the data map (as offset) - no error checking if datasize and offsets are compatible!
      \param dMap array of size nx*ny storing the pointers to the data in the dataset (as offset). If NULL (default),the data are arranged as if read out row by row (dataMap[iy][ix]=(iy*nx+ix)*sizeof(dataType);)
@@ -205,23 +203,28 @@ class slsDetectorData {
 virtual void getPixel(int ip, int &x, int &y) {x=xmap[ip]; y=ymap[ip];};
   
 virtual dataType **getData(char *ptr, int dsize=-1) {
-    
-    dataType **data;
+    int el=dsize/sizeof(dataType);
+    //dataType **data;
     int ix,iy;
-    data=new dataType*[ny];
-    for(int i = 0; i < ny; i++) {
-      data[i]=new dataType[nx];
-    }
+    //data=new dataType*[ny];
+    //for(int i = 0; i < ny; i++) {
+    //  data[i]=new dataType[nx];
+    //}
+     isOrdered=0;
     if (dsize<=0 || dsize>dataSize) dsize=dataSize;
-    for (int ip=0; ip<(dsize/sizeof(dataType)); ip++) {
+
+    for (int ip=0; ip<(el); ip++) {
       getPixel(ip,ix,iy);
       if (ix>=0 && ix<nx && iy>=0 && iy<ny) {
-	data[iy][ix]=getChannel(ptr,ix,iy);
+	//data[iy][ix]=getChannel(ptr,ix,iy);
+	orderedData[iy][ix]=*(ptr+ip);//getChannel(ptr,ix,iy);
       }
     }
-    return data;
+    isOrdered=1;
+    return orderedData;
+}
 
-  };
+ void newFrame(){isOrdered=0;};
 
   virtual double **getImage(char *ptr, int dsize=-1) {
     
@@ -231,15 +234,15 @@ class slsDetectorData {
     for(int i = 0; i < ny; i++) {
       data[i]=new double[nx];
     }
+    int el=dsize/sizeof(dataType);
     if (dsize<=0 || dsize>dataSize) dsize=dataSize;
-    for (int ip=0; ip<(dsize/sizeof(dataType)); ip++) {
+    for (int ip=0; ip<el; ip++) {
       getPixel(ip,ix,iy);
       if (ix>=0 && ix<nx && iy>=0 && iy<ny) {
 	data[iy][ix]=getValue(ptr,ix,iy);
       }
     }
     return data;   
-    
   };
   
   /** 
@@ -256,7 +259,10 @@ class slsDetectorData {
       // cout << ix << " " << iy << " " ;
       //cout << dataMap[ix][iy] << " " << (void*)data << " " << dataSize<< endl;
       m=dataMask[iy][ix];
-      d=*((dataType*)(data+dataMap[iy][ix]));
+        if (isOrdered==0)
+	  d=*((dataType*)(data+getPointer(ix,iy)));
+      else
+	d=orderedData[iy][ix];
     }  
     return d^m;
   };

slsDetectorCalibration/ghostSummation.h

@@ -13,7 +13,7 @@ template <class dataType> class ghostSummation {
   /** constructor
       \param xt crosstalk
   */
- ghostSummation(slsDetectorData<dataType> *d, double xt) : xtalk(xt),det(d)  {
+  ghostSummation(slsDetectorData<dataType> *d, double xt) : xtalk(xt),det(d), nx(1), ny(1)  {
     if (det)
       det->getDetectorSize(nx,ny);
     ghost=new double[nx*ny];
@@ -22,6 +22,9 @@ template <class dataType> class ghostSummation {
   ghostSummation(ghostSummation *orig) {
     xtalk=orig->xtalk; 
     det=orig->det;
+    nx=1;
+    ny=1;
+    det->getDetectorSize(nx,ny);
     ghost=new double[nx*ny];
     
   }

slsDetectorCalibration/interpolatingDetector.h

@@ -107,11 +107,11 @@ class interpolatingDetector : public singlePhotonDetector {
       singlePhotonDetector::clearImage();
   };
 
-  int getImageSize(int &nnx, int &nny, int &ns) {
+  int getImageSize(int &nnx, int &nny, int &nsx, int &nsy) {
     if (interp) 
-      return interp->getImageSize(nnx, nny, ns); 
+      return interp->getImageSize(nnx, nny, nsx, nsy); 
     else 
-      return analogDetector<uint16_t>::getImageSize(nnx, nny, ns);
+      return analogDetector<uint16_t>::getImageSize(nnx, nny, nsx, nsy);
   };
 
 
@@ -251,6 +251,7 @@ int addFrame(char *data,  int *ph=NULL, int ff=0) {
     }
 
     virtual int getNSubPixels(){ if (interp) return interp->getNSubPixels(); else return 1;}
+
     virtual int setNSubPixels(int ns)  { 
       if (interp) {
 	pthread_mutex_lock(fi); 

slsDetectorCalibration/interpolations/eta2InterpolationBase.h

@@ -13,7 +13,7 @@
 class eta2InterpolationBase : public virtual etaInterpolationBase {
   
  public:
- eta2InterpolationBase(int nx=400, int ny=400, int ns=25, int nb=-1, double emin=1, double emax=0) :  etaInterpolationBase(nx,ny, ns, nb, emin, emax) {
+ eta2InterpolationBase(int nx=400, int ny=400, int ns=25, int nsy=25, int nb=-1, int nby=-1, double emin=1, double emax=0) :  etaInterpolationBase(nx,ny, ns, nsy, nb, nby, emin, emax) {
     
     /* if (etamin>=etamax) { */
     /*   etamin=-1; */
@@ -37,7 +37,7 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
     
     int corner;
     corner=calcQuad(data, tot, totquad, sDum); 
-    if (nSubPixels>2) 
+    if (nSubPixelsX>2 || nSubPixelsY>2) 
       calcEta(totquad, sDum, etax, etay); 
     getInterpolatedPosition(x,y,etax,etay,corner,int_x,int_y);
 
@@ -53,7 +53,7 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
     
     int corner;
     corner=calcQuad(data, tot, totquad, sDum); 
-    if (nSubPixels>2) 
+    if (nSubPixelsX>2 || nSubPixelsY>2  ) 
       calcEta(totquad, sDum, etax, etay); 
     getInterpolatedPosition(x,y,etax,etay,corner,int_x,int_y);
 
@@ -93,7 +93,7 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
        ;
      } 
      double etax=0, etay=0;
-     if (nSubPixels>2) { 
+     if (nSubPixelsX>2 || nSubPixelsY>2) { 
        cc[0][0]=cl[xoff+3*yoff];
        cc[1][0]=cl[xoff+3*(yoff+1)];
        cc[0][1]=cl[xoff+1+3*yoff];
@@ -133,7 +133,7 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
        ;
      } 
      double etax=0, etay=0;
-     if (nSubPixels>2) { 
+     if (nSubPixelsX>2 || nSubPixelsY>2) { 
        cc[0][0]=cl[xoff+3*yoff];
        cc[1][0]=cl[xoff+3*(yoff+1)];
        cc[0][1]=cl[xoff+1+3*yoff];
@@ -182,31 +182,31 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
       }
     
 
-     if (nSubPixels>2) { 
+     if (nSubPixelsX>2 || nSubPixelsY>2 ) { 
 
-       ex=(etax-etamin)/etastep;
-       ey=(etay-etamin)/etastep;
+       ex=(etax-etamin)/etastepX;
+       ey=(etay-etamin)/etastepY;
        if (ex<0) {
 	 cout << "x*"<< ex << endl;
 	 ex=0;
        } 
-       if (ex>=nbeta) {
+       if (ex>=nbetaX) {
 	 cout << "x?"<< ex << endl;
-	 ex=nbeta-1;
+	 ex=nbetaX-1;
        }
        if (ey<0) {
-	 cout << "y*"<< ey << endl;
+	 cout << "y*"<< ey << " " << nbetaY << endl;
 	 ey=0;
        } 
-       if (ey>=nbeta) {
-	 cout << "y?"<< ey << endl;
-	 ey=nbeta-1;
+       if (ey>=nbetaY) {
+	 cout << "y?"<< ey << " " << nbetaY << endl;
+	 ey=nbetaY-1;
        }
     
     
    
-       xpos_eta=(((double)hhx[(ey*nbeta+ex)]))+dX ;///((double)nSubPixels);
-       ypos_eta=(((double)hhy[(ey*nbeta+ex)]))+dY ;///((double)nSubPixels);
+       xpos_eta=(((double)hhx[(ey*nbetaX+ex)]))+dX ;///((double)nSubPixels);
+       ypos_eta=(((double)hhy[(ey*nbetaX+ex)]))+dY ;///((double)nSubPixels);
        
      } else {
        xpos_eta=0.5*dX+0.25;
@@ -347,10 +347,10 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
 #endif
 #ifndef MYROOT1
     int ex,ey; 
-    ex=(etax-etamin)/etastep;
-    ey=(etay-etamin)/etastep;
-    if (ey<nbeta && ex<nbeta && ex>=0 && ey>=0)
-      heta[ey*nbeta+ex]++; 
+    ex=(etax-etamin)/etastepX;
+    ey=(etay-etamin)/etastepY;
+    if (ey<nbetaY && ex<nbetaX && ex>=0 && ey>=0)
+      heta[ey*nbetaX+ex]++; 
 #endif
     return 0;    
   };
@@ -360,22 +360,22 @@ class eta2InterpolationBase : public virtual etaInterpolationBase {
    // cout << "ff" << endl;
    calcDiff(1, hhx, hhy); //get flat
    double avg=0;
-   for (ipx=0; ipx<nSubPixels; ipx++)
-     for (ipy=0; ipy<nSubPixels; ipy++)
-       avg+=flat[ipx+ipy*nSubPixels];
-   avg/=nSubPixels*nSubPixels;
+   for (ipx=0; ipx<nSubPixelsX; ipx++)
+     for (ipy=0; ipy<nSubPixelsY; ipy++)
+       avg+=flat[ipx+ipy*nSubPixelsX];
+   avg/=nSubPixelsY*nSubPixelsX;
 
-   for (int ibx=0 ; ibx<nSubPixels*nPixelsX; ibx++) {
-     ipx=ibx%nSubPixels-nSubPixels/2;
-       if (ipx<0) ipx=nSubPixels+ipx;
-     for (int iby=0 ; iby<nSubPixels*nPixelsY; iby++) {
-       ipy=iby%nSubPixels-nSubPixels/2;
-     if (ipy<0) ipy=nSubPixels+ipy;
+   for (int ibx=0 ; ibx<nSubPixelsX*nPixelsX; ibx++) {
+     ipx=ibx%nSubPixelsX-nSubPixelsX/2;
+       if (ipx<0) ipx=nSubPixelsX+ipx;
+     for (int iby=0 ; iby<nSubPixelsY*nPixelsY; iby++) {
+       ipy=iby%nSubPixelsY-nSubPixelsY/2;
+     if (ipy<0) ipy=nSubPixelsY+ipy;
      // cout << ipx << " " << ipy << " " << ibx << " " << iby << endl;
-     if (flat[ipx+ipy*nSubPixels]>0)
-       hintcorr[ibx+iby*nSubPixels*nPixelsX]=hint[ibx+iby*nSubPixels*nPixelsX]*(avg/flat[ipx+ipy*nSubPixels]);
+     if (flat[ipx+ipy*nSubPixelsX]>0)
+       hintcorr[ibx+iby*nSubPixelsX*nPixelsX]=hint[ibx+iby*nSubPixelsX*nPixelsX]*(avg/flat[ipx+ipy*nSubPixelsX]);
      else
-       hintcorr[ibx+iby*nSubPixels*nPixelsX]=hint[ibx+iby*nSubPixels*nPixelsX];
+       hintcorr[ibx+iby*nSubPixelsX*nPixelsX]=hint[ibx+iby*nSubPixelsX*nPixelsX];
 
 
      }

slsDetectorCalibration/interpolations/eta3InterpolationBase.h

@@ -13,35 +13,12 @@
 class eta3InterpolationBase : public virtual etaInterpolationBase  {
   
  public:
- eta3InterpolationBase(int nx=400, int ny=400, int ns=25, int nb=-1, double emin=1, double emax=0) : etaInterpolationBase(nx, ny, ns, nb, emin, emax) {
+ eta3InterpolationBase(int nx=400, int ny=400, int ns=25, int nsy=25, int nb=-1, int nby=-1, double emin=1, double emax=0) : etaInterpolationBase(nx, ny, ns, nsy, nb, nby, emin, emax) {
     //  cout << "e3ib " << nb << " " << emin << " " << emax << endl; 
     /* if (nbeta<=0) { */
     /*   nbeta=nSubPixels*10;    */
     /* } */
-    if (etamin>=etamax) {
-      etamin=-1;
-      etamax=1; 
-    }
   
-    etastep=(etamax-etamin)/nbeta;
-#ifdef MYROOT1
-    delete heta;
-    delete hhx;
-    delete hhy;
-    heta=new TH2D("heta","heta",nbeta,etamin,etamax,nbeta,etamin,etamax);
-    hhx=new TH2D("hhx","hhx",nbeta,etamin,etamax,nbeta,etamin,etamax);
-    hhy=new TH2D("hhy","hhy",nbeta,etamin,etamax,nbeta,etamin,etamax);
-#endif
-#ifndef MYROOT1
-    /* delete [] heta; */
-    /* delete [] hhx; */
-    /* delete [] hhy; */
-
-    /* heta=new int[nbeta*nbeta]; */
-    /* hhx=new float[nbeta*nbeta]; */
-    /* hhy=new float[nbeta*nbeta]; */
-    
-#endif
     //   cout << nbeta << " " << etamin << " " << etamax << endl;
 };
   
@@ -88,7 +65,7 @@ class eta3InterpolationBase : public virtual etaInterpolationBase  {
     
   
     double etax, etay;
-     if (nSubPixels>2) { 
+     if (nSubPixelsX>2 || nSubPixelsY>2 ) { 
        calcEta3(cl,etax,etay, totquad);
      } 
      return getInterpolatedPosition(x,y,etax, etay,quad,int_x,int_y);
@@ -101,7 +78,7 @@ class eta3InterpolationBase : public virtual etaInterpolationBase  {
     
     
      double etax, etay;
-     if (nSubPixels>2) { 
+     if (nSubPixelsX>2 || nSubPixelsY>2 ) { 
        calcEta3(cl,etax,etay, totquad);
      }
      return getInterpolatedPosition(x,y,etax, etay,quad,int_x,int_y);
@@ -117,38 +94,38 @@ class eta3InterpolationBase : public virtual etaInterpolationBase  {
     double xpos_eta=0,ypos_eta=0;
     int ex,ey;
 
-     if (nSubPixels>2) { 
+     if (nSubPixelsX>2 || nSubPixelsY>2 ) { 
 
 #ifdef MYROOT1
-    xpos_eta=(hhx->GetBinContent(hhx->GetXaxis()->FindBin(etax),hhy->GetYaxis()->FindBin(etay)))/((double)nSubPixels);
-    ypos_eta=(hhy->GetBinContent(hhx->GetXaxis()->FindBin(etax),hhy->GetYaxis()->FindBin(etay)))/((double)nSubPixels);
+    xpos_eta=(hhx->GetBinContent(hhx->GetXaxis()->FindBin(etax),hhy->GetYaxis()->FindBin(etay)))/((double)nSubPixelsX);
+    ypos_eta=(hhy->GetBinContent(hhx->GetXaxis()->FindBin(etax),hhy->GetYaxis()->FindBin(etay)))/((double)nSubPixelsY);
 #endif
 #ifndef MYROOT1
-    ex=(etax-etamin)/etastep;
-    ey=(etay-etamin)/etastep;
+    ex=(etax-etamin)/etastepX;
+    ey=(etay-etamin)/etastepY;
     if (ex<0) {
       /* cout << etax << " " << etamin << " "; */
       /*  cout << "3x*"<< ex << endl; */
       ex=0;
 	} 
-    if (ex>=nbeta) {
+    if (ex>=nbetaX) {
       /* cout << etax << " " << etamin << " "; */
       /* cout << "3x?"<< ex << endl; */
-      ex=nbeta-1;
+      ex=nbetaX-1;
     }
     if (ey<0) {
       /* cout << etay << " " << etamin << " "; */
       /* cout << "3y*"<< ey << endl; */
       ey=0;
 	} 
-    if (ey>=nbeta) {
+    if (ey>=nbetaY) {
       /* cout << etay << " " << etamin << " "; */
       /* cout << "3y?"<< ey << endl; */
-      ey=nbeta-1;
+      ey=nbetaY-1;
       
     }
-    xpos_eta=(((double)hhx[(ey*nbeta+ex)]));///((double)nSubPixels);
-    ypos_eta=(((double)hhy[(ey*nbeta+ex)]));///((double)nSubPixels);
+    xpos_eta=(((double)hhx[(ey*nbetaX+ex)]));///((double)nSubPixels);
+    ypos_eta=(((double)hhy[(ey*nbetaX+ex)]));///((double)nSubPixels);
 
 #endif
    
@@ -265,10 +242,10 @@ class eta3InterpolationBase : public virtual etaInterpolationBase  {
 #endif
 #ifndef MYROOT1
     int ex,ey; 
-    ex=(etax-etamin)/etastep;
-    ey=(etay-etamin)/etastep;
-    if (ey<nbeta && ex<nbeta && ex>=0 && ey>=0)
-      heta[ey*nbeta+ex]++; 
+    ex=(etax-etamin)/etastepX;
+    ey=(etay-etamin)/etastepY;
+    if (ey<nbetaY && ex<nbetaX && ex>=0 && ey>=0)
+      heta[ey*nbetaX+ex]++; 
 #endif
     return 0;    
   };

slsDetectorCalibration/interpolations/etaInterpolationBase.h

@@ -7,7 +7,7 @@
 #include <TH2D.h>
 #include <TH2F.h>
 #endif
-
+#include <cmath> 
 #include "slsInterpolation.h"
 #include "tiffIO.h"
 
@@ -15,44 +15,51 @@ class etaInterpolationBase : public slsInterpolation {
   
  public:
  
- etaInterpolationBase(int nx=400, int ny=400, int ns=25, int nb=-1, double emin=1, double emax=0) : slsInterpolation(nx,ny,ns), hhx(NULL), hhy(NULL), heta(NULL), nbeta(nb), etamin(emin), etamax(emax) {
+ etaInterpolationBase(int nx=400, int ny=400, int ns=25, int nsy=25, int nb=-1, int nby=-1, double emin=1, double emax=0) : slsInterpolation(nx,ny,ns,nsy), hhx(NULL), hhy(NULL), heta(NULL), nbetaX(nb), nbetaY(nby), etamin(emin), etamax(emax) {
     // cout << "eb " << nb << " " << emin << " " << emax << endl;  
     // cout << nb << " " << etamin << " " << etamax << endl;
-    if (nbeta<=0) {
+    if (nbetaX<=0) {
       //cout << "aaa:" <<endl;
-      nbeta=nSubPixels*10;
+      nbetaX=nSubPixelsX*10;
+    } 
+    if (nbetaY<=0) {
+      //cout << "aaa:" <<endl;
+      nbetaY=nSubPixelsY*10;
     }
     if (etamin>=etamax) {
       etamin=-1;
       etamax=2;
     }
-    etastep=(etamax-etamin)/nbeta;
-    heta=new int[nbeta*nbeta];
-    hhx=new float[nbeta*nbeta];
-    hhy=new float[nbeta*nbeta];
+    etastepX=(etamax-etamin)/nbetaX;
+    etastepY=(etamax-etamin)/nbetaY;
+    heta=new int[nbetaX*nbetaY];
+    hhx=new float[nbetaX*nbetaY];
+    hhy=new float[nbetaX*nbetaY];
     rangeMin=etamin;
     rangeMax=etamax;
-    flat= new double[nSubPixels*nSubPixels];
-    hintcorr=new int [nSubPixels*nSubPixels*nPixelsX*nPixelsY];
+    flat= new double[nSubPixelsX*nSubPixelsY];
+    hintcorr=new int [nSubPixelsX*nSubPixelsY*nPixelsX*nPixelsY];
     
   };
   
  etaInterpolationBase(etaInterpolationBase *orig): slsInterpolation(orig){
-   nbeta=orig->nbeta;
+   nbetaX=orig->nbetaX;
+   nbetaY=orig->nbetaY;
    etamin=orig->etamin;
    etamax=orig->etamax;
    rangeMin=orig->rangeMin;
    rangeMax=orig->rangeMax;
 
 
-    etastep=(etamax-etamin)/nbeta;
-    heta=new int[nbeta*nbeta];
-    memcpy(heta,orig->heta,nbeta*nbeta*sizeof(int));
-    hhx=new float[nbeta*nbeta];
-    memcpy(hhx,orig->hhx,nbeta*nbeta*sizeof(float));
-    hhy=new float[nbeta*nbeta];
-    memcpy(hhy,orig->hhy,nbeta*nbeta*sizeof(float));
-    hintcorr=new int [nSubPixels*nSubPixels*nPixelsX*nPixelsY];
+    etastepX=(etamax-etamin)/nbetaX;
+    etastepY=(etamax-etamin)/nbetaY;
+    heta=new int[nbetaX*nbetaY];
+    memcpy(heta,orig->heta,nbetaX*nbetaY*sizeof(int));
+    hhx=new float[nbetaX*nbetaY];
+    memcpy(hhx,orig->hhx,nbetaX*nbetaY*sizeof(float));
+    hhy=new float[nbetaX*nbetaY];
+    memcpy(hhy,orig->hhy,nbetaX*nbetaY*sizeof(float));
+    hintcorr=new int [nSubPixelsX*nSubPixelsY*nPixelsX*nPixelsY];
 
  };
 
@@ -61,7 +68,7 @@ class etaInterpolationBase : public slsInterpolation {
 
 
   virtual void resetFlatField() {
-    for (int ibx=0; ibx<nbeta*nbeta; ibx++) {
+    for (int ibx=0; ibx<nbetaX*nbetaY; ibx++) {
       heta[ibx]=0;
       hhx[ibx]=0;
       hhy[ibx]=0;
@@ -70,13 +77,16 @@ class etaInterpolationBase : public slsInterpolation {
 
   };
     
-  int *setEta(int *h, int nb=-1, double emin=1, double emax=0)
+  int *setEta(int *h, int nb=-1, int nby=-1, double emin=1, double emax=0)
   {  
     if (h) {
       if (heta) delete [] heta;
       heta=h;
-      nbeta=nb;
-      if (nb<=0) nbeta=nSubPixels*10;
+      nbetaX=nb;
+      nbetaY=nby;
+      if (nbetaX<=0) nbetaX=nSubPixelsX*10;
+      if (nbetaY<=0) nbetaY=nSubPixelsY*10;
+      
       etamin=emin;
       etamax=emax;
       if (etamin>=etamax) {
@@ -85,22 +95,24 @@ class etaInterpolationBase : public slsInterpolation {
       }
       rangeMin=etamin;
       rangeMax=etamax;
-      etastep=(etamax-etamin)/nbeta;
+      etastepX=(etamax-etamin)/nbetaX;
+      etastepY=(etamax-etamin)/nbetaY;
     }
     return heta;
   };
   
-   int *setFlatField(int *h, int nb=-1, double emin=1, double emax=0)
+   int *setFlatField(int *h, int nb=-1, int nby=-1, double emin=1, double emax=0)
   {  
-    return setEta(h, nb, emin, emax);
+    return setEta(h, nb, nby, emin, emax);
   };
 
 
 
   int *getFlatField(){return setEta(NULL);};
   
-  int *getFlatField(int &nb, double &emin, double &emax){
-    nb=nbeta; 
+  int *getFlatField(int &nb, int &nby, double &emin, double &emax){
+    nb=nbetaX; 
+    nby=nbetaY; 
     emin=etamin; 
     emax=etamax; 
     return getFlatField();
@@ -109,13 +121,13 @@ class etaInterpolationBase : public slsInterpolation {
   
   void *writeFlatField(const char * imgname) {
     float *gm=NULL;
-    gm=new float[nbeta*nbeta];
-    for (int ix=0; ix<nbeta; ix++) {
-      for (int iy=0; iy<nbeta; iy++) {
-	gm[iy*nbeta+ix]=heta[iy*nbeta+ix];
+    gm=new float[nbetaX*nbetaY];
+    for (int ix=0; ix<nbetaX; ix++) {
+      for (int iy=0; iy<nbetaY; iy++) {
+	gm[iy*nbetaX+ix]=heta[iy*nbetaX+ix];
       }
     } 
-    WriteToTiff(gm, imgname, nbeta, nbeta);   
+    WriteToTiff(gm, imgname, nbetaX, nbetaY);   
     delete [] gm;
     return NULL; 
   };
@@ -129,16 +141,18 @@ class etaInterpolationBase : public slsInterpolation {
       etamax=2;
     }
     
-    etastep=(etamax-etamin)/nbeta;
+    etastepX=(etamax-etamin)/nbetaX;
+    etastepY=(etamax-etamin)/nbetaY;
     uint32 nnx;
     uint32 nny;
     float *gm=ReadFromTiff(imgname, nnx, nny);
-    if (nnx!=nny) {
-      cout << "different number of bins in x " << nnx << "  and y " << nny<< " !"<< endl;
-      cout << "Aborting read"<< endl;
-      return 0;
-    }
-    nbeta=nnx;
+    /* if (nnx!=nny) { */
+    /*   cout << "different number of bins in x " << nnx << "  and y " << nny<< " !"<< endl; */
+    /*   cout << "Aborting read"<< endl; */
+    /*   return 0; */
+    /* } */
+    nbetaX=nnx;
+    nbetaY=nny;
     if (gm) {
       if (heta) {
 	delete [] heta;
@@ -146,13 +160,13 @@ class etaInterpolationBase : public slsInterpolation {
 	delete [] hhy;
       }
       
-      heta=new int[nbeta*nbeta];
-      hhx=new float[nbeta*nbeta];
-      hhy=new float[nbeta*nbeta];
+      heta=new int[nbetaX*nbetaY];
+      hhx=new float[nbetaX*nbetaY];
+      hhy=new float[nbetaX*nbetaY];
       
-      for (int ix=0; ix<nbeta; ix++) {
-	for (int iy=0; iy<nbeta; iy++) {
-	  heta[iy*nbeta+ix]=gm[iy*nbeta+ix];
+      for (int ix=0; ix<nbetaX; ix++) {
+	for (int iy=0; iy<nbetaY; iy++) {
+	  heta[iy*nbetaX+ix]=gm[iy*nbetaX+ix];
 	}
       }
       delete [] gm;
@@ -178,10 +192,10 @@ float *gethhx()
     };
   virtual int addToFlatField(double etax, double etay){
     int ex,ey; 
-    ex=(etax-etamin)/etastep;
-    ey=(etay-etamin)/etastep;
-    if (ey<nbeta && ex<nbeta && ex>=0 && ey>=0)
-      heta[ey*nbeta+ex]++; 
+    ex=(etax-etamin)/etastepX;
+    ey=(etay-etamin)/etastepY;
+    if (ey<nbetaY && ex<nbetaX && ex>=0 && ey>=0)
+      heta[ey*nbetaX+ex]++; 
     return 0;    
   };
   
@@ -195,80 +209,80 @@ float *gethhx()
    
    float tot_eta=0;
 
-  float *etah=new float[nbeta*nbeta];
-  int etabins=nbeta;
+  float *etah=new float[nbetaX*nbetaY];
+  // int etabins=nbeta;
   int ibb=0;
 
-  for (int ii=0; ii<etabins*etabins; ii++) {
+  for (int ii=0; ii<nbetaX*nbetaY; ii++) {
    
       etah[ii]=heta[ii];
       tot_eta+=heta[ii];
   }
   sprintf(tit,"/scratch/eta_%d.tiff",ind);
-  WriteToTiff(etah, tit, etabins, etabins);
+  WriteToTiff(etah, tit, nbetaX, nbetaY);
 
 
-  for (int ii=0; ii<etabins*etabins; ii++) {
-    ibb=(hhx[ii]*nSubPixels);
+  for (int ii=0; ii<nbetaX*nbetaY; ii++) {
+    ibb=(hhx[ii]*nSubPixelsX);
     etah[ii]=ibb;
   }
   sprintf(tit,"/scratch/eta_hhx_%d.tiff",ind);
-  WriteToTiff(etah, tit, etabins, etabins);
+  WriteToTiff(etah, tit, nbetaX, nbetaY);
 	  
-  for (int ii=0; ii<etabins*etabins; ii++) {
-    ibb=hhy[ii]*nSubPixels;
+  for (int ii=0; ii<nbetaX*nbetaY; ii++) {
+    ibb=hhy[ii]*nSubPixelsY;
     etah[ii]=ibb;
   }
   sprintf(tit,"/scratch/eta_hhy_%d.tiff",ind);
-  WriteToTiff(etah, tit, etabins, etabins);
+  WriteToTiff(etah, tit, nbetaX, nbetaY);
 	  
   
-  float *ftest=new float[nSubPixels*nSubPixels];
+  float *ftest=new float[nSubPixelsX*nSubPixelsY];
 
-  for (int ib=0; ib<nSubPixels*nSubPixels; ib++) ftest[ib]=0;
+  for (int ib=0; ib<nSubPixelsX*nSubPixelsY; ib++) ftest[ib]=0;
   
 
   //int ibx=0, iby=0;
   
-  for (int ii=0; ii<nbeta*nbeta; ii++) {
+  for (int ii=0; ii<nbetaX*nbetaY; ii++) {
     
-    ibx=nSubPixels*hhx[ii];
-    iby=nSubPixels*hhy[ii];
+    ibx=nSubPixelsX*hhx[ii];
+    iby=nSubPixelsY*hhy[ii];
     if (ibx<0) ibx=0;
     if (iby<0) iby=0;
-    if (ibx>=nSubPixels) ibx=nSubPixels-1;
-    if (iby>=nSubPixels) iby=nSubPixels-1;
+    if (ibx>=nSubPixelsX) ibx=nSubPixelsX-1;
+    if (iby>=nSubPixelsY) iby=nSubPixelsY-1;
     
 
-    if (ibx>=0 && ibx<nSubPixels && iby>=0 && iby<nSubPixels) {
+    if (ibx>=0 && ibx<nSubPixelsX && iby>=0 && iby<nSubPixelsY) {
       //
       // if (ibx>0 && iby>0) cout << ibx << " " << iby << " " << ii << endl;
-      ftest[ibx+iby*nSubPixels]+=heta[ii];
+      ftest[ibx+iby*nSubPixelsX]+=heta[ii];
     } else
       cout << "Bad interpolation "<< ii << " " << ibx << " " << iby<< endl; 
     
   }
 
   sprintf(tit,"/scratch/ftest_%d.tiff",ind);
-  WriteToTiff(ftest, tit, nSubPixels, nSubPixels);
+  WriteToTiff(ftest, tit, nSubPixelsX, nSubPixelsY);
 
   //int ibx=0, iby=0;
-  tot_eta/=nSubPixels*nSubPixels;
+  tot_eta/=nSubPixelsX*nSubPixelsY;
   int nbad=0;
-  for (int ii=0; ii<etabins*etabins; ii++) {
-    ibx=nSubPixels*hhx[ii];
-    iby=nSubPixels*hhy[ii];
-    if (ftest[ibx+iby*nSubPixels]<tot_eta*0.5) {
+  for (int ii=0; ii<nbetaX*nbetaY; ii++) {
+    ibx=nSubPixelsX*hhx[ii];
+    iby=nSubPixelsY*hhy[ii];
+    if (ftest[ibx+iby*nSubPixelsX]<tot_eta*0.5) {
       etah[ii]=1;
       nbad++;
-    } else if(ftest[ibx+iby*nSubPixels]>tot_eta*2.){
+    } else if(ftest[ibx+iby*nSubPixelsX]>tot_eta*2.){
       etah[ii]=2;
       nbad++;
     } else
       etah[ii]=0;
   }
   sprintf(tit,"/scratch/eta_bad_%d.tiff",ind);
-  WriteToTiff(etah, tit, etabins, etabins);
+  WriteToTiff(etah, tit, nbetaX, nbetaY);
   // cout << "Index: " << ind << "\t Bad bins: "<< nbad << endl;
   //int ibx=0, iby=0;
 
@@ -286,46 +300,44 @@ float *gethhx()
     double diff=0, d;
     //double bsize=1./nSubPixels;
     int nbad=0;
-    double p_tot_x[nSubPixels], p_tot_y[nSubPixels], p_tot[nSubPixels*nSubPixels];
-    double maxdiff=0, mindiff=avg*nSubPixels*nSubPixels;
+    double p_tot_x[nSubPixelsX], p_tot_y[nSubPixelsY], p_tot[nSubPixelsX*nSubPixelsY];
+    double maxdiff=0, mindiff=avg*nSubPixelsX*nSubPixelsY;
    
     int ipx, ipy;
-    for (ipy=0; ipy<nSubPixels; ipy++) {
-      for (ipx=0; ipx<nSubPixels; ipx++) {
-	p_tot[ipx+ipy*nSubPixels]=0;
+    for (ipy=0; ipy<nSubPixelsY; ipy++) {
+      for (ipx=0; ipx<nSubPixelsX; ipx++) {
+	p_tot[ipx+ipy*nSubPixelsX]=0;
       }
       p_tot_y[ipy]=0;
       p_tot_x[ipy]=0;
     }
    
-    for (int ibx=0; ibx<nbeta; ibx++) {
-      for (int iby=0; iby<nbeta; iby++) {
-	ipx=hx[ibx+iby*nbeta]*nSubPixels;
+    for (int ibx=0; ibx<nbetaX; ibx++) {
+      for (int iby=0; iby<nbetaY; iby++) {
+	ipx=hx[ibx+iby*nbetaX]*nSubPixelsX;
 	if (ipx<0) ipx=0;
-	if (ipx>=nSubPixels) ipx=nSubPixels-1;
+	if (ipx>=nSubPixelsX) ipx=nSubPixelsX-1;
 	
-	ipy=hy[ibx+iby*nbeta]*nSubPixels;
+	ipy=hy[ibx+iby*nbetaX]*nSubPixelsY;
 	if (ipy<0) ipy=0;
-	if (ipy>=nSubPixels) ipy=nSubPixels-1;
-	
-	p_tot[ipx+ipy*nSubPixels]+=heta[ibx+iby*nbeta];
-	p_tot_y[ipy]+=heta[ibx+iby*nbeta];
-	p_tot_x[ipx]+=heta[ibx+iby*nbeta];
-	
+	if (ipy>=nSubPixelsY) ipy=nSubPixelsY-1;
 	
+	p_tot[ipx+ipy*nSubPixelsX]+=heta[ibx+iby*nbetaX];
+	p_tot_y[ipy]+=heta[ibx+iby*nbetaX];
+	p_tot_x[ipx]+=heta[ibx+iby*nbetaX];
       }
     }
     
     
     //  cout << endl << endl;
-    for (ipy=0; ipy<nSubPixels; ipy++) { 
+    for (ipy=0; ipy<nSubPixelsY; ipy++) { 
      cout.width(5);
      //flat_y[ipy]=p_tot_y[ipy];//avg/nSubPixels;
-      for (ipx=0; ipx<nSubPixels; ipx++) {
+      for (ipx=0; ipx<nSubPixelsX; ipx++) {
 
 	//	flat_x[ipx]=p_tot_x[ipx];///avg/nSubPixels;
-	flat[ipx+nSubPixels*ipy]=p_tot[ipx+nSubPixels*ipy];///avg;
-	d=p_tot[ipx+nSubPixels*ipy]-avg;
+	flat[ipx+nSubPixelsX*ipy]=p_tot[ipx+nSubPixelsX*ipy];///avg;
+	d=p_tot[ipx+nSubPixelsX*ipy]-avg;
 	if (d<0) d*=-1.;
 	if (d>5*sqrt(avg) )
 	  nbad++;
@@ -354,8 +366,8 @@ float *gethhx()
   float *hhx;
   float *hhy;
   int *heta;
-  int nbeta;
-  double etamin, etamax, etastep;
+  int nbetaX, nbetaY;
+  double etamin, etamax, etastepX, etastepY;
   double rangeMin, rangeMax;
 
 

slsDetectorCalibration/interpolations/etaInterpolationPosXY.h

@@ -9,7 +9,7 @@
 
 class etaInterpolationPosXY : public virtual etaInterpolationBase{
  public:
- etaInterpolationPosXY(int nx=400, int ny=400, int ns=25, int nb=-1, double emin=1, double emax=0) : etaInterpolationBase(nx,ny,ns, nb, emin,emax){
+ etaInterpolationPosXY(int nx=400, int ny=400, int ns=25, int nsy=25, int nb=-1, int nby=-1, double emin=1, double emax=0) : etaInterpolationBase(nx,ny, ns, nsy, nb, nby, emin, emax){
     //  cout << "epxy " << nb << " " << emin << " " << emax << endl; cout << nbeta << " " << etamin << " " << etamax << endl; 
   };
 
@@ -24,14 +24,6 @@ class etaInterpolationPosXY : public virtual etaInterpolationBase{
   virtual void prepareInterpolation(int &ok)
   {
    ok=1;  
-#ifdef MYROOT1   
-   if (hhx) delete hhx;
-   if (hhy) delete hhy;
-
-   hhx=new TH2D("hhx","hhx",heta->GetNbinsX(),heta->GetXaxis()->GetXmin(),heta->GetXaxis()->GetXmax(), heta->GetNbinsY(),heta->GetYaxis()->GetXmin(),heta->GetYaxis()->GetXmax()); 
-   hhy=new TH2D("hhy","hhy",heta->GetNbinsX(),heta->GetXaxis()->GetXmin(),heta->GetXaxis()->GetXmax(), heta->GetNbinsY(),heta->GetYaxis()->GetXmin(),heta->GetYaxis()->GetXmax()); 
-   
-#endif
 
 
    ///*Eta Distribution Rebinning*///
@@ -40,106 +32,128 @@ class etaInterpolationPosXY : public virtual etaInterpolationBase{
    double tot_eta=0;
    double tot_eta_x=0;
    double tot_eta_y=0;
-   for (int ip=0; ip<nbeta*nbeta; ip++)
+   for (int ip=0; ip<nbetaX*nbetaY; ip++)
      tot_eta+=heta[ip];
    cout << "total eta entries is :"<< tot_eta << endl;   
    if (tot_eta<=0) {ok=0; return;};
 
 
-   double hx[nbeta]; //profile x
-   double hy[nbeta]; //profile y
-   double hix[nbeta]; //integral of projection x
-   double hiy[nbeta]; //integral of projection y
+   double hx[nbetaX]; //profile x
+   double hy[nbetaY]; //profile y
+   double hix[nbetaX]; //integral of projection x
+   double hiy[nbetaY]; //integral of projection y
    //  int ii=0;
-   double etax;//, etay;
-   for (int ib=0; ib<nbeta; ib++) {
+   double etax, etay;
+   for (int ib=0; ib<nbetaX; ib++) {
 
-     tot_eta_x=0;
-     tot_eta_y=0;
    
-     for (int iby=0; iby<nbeta; iby++) {
-       etax=etamin+iby*etastep;
+     //tot_eta_y=0;
+
+     for (int iby=0; iby<nbetaY; iby++) {
+       etay=etamin+iby*etastepY;
        //cout << etax << endl;
-       if (etax>=0 && etax<=1)
-	 hx[iby]=heta[iby+ib*nbeta];
-       else {
-	 hx[iby]=0;
-       }
+     
        // tot_eta_x+=hx[iby];
-       if (etax>=0 && etax<=1)
-	 hy[iby]=heta[ib+iby*nbeta];
+       if (etay>=0 && etay<=1)
+	 hy[iby]=heta[ib+iby*nbetaX];
        else
 	 hy[iby]=0;
        // tot_eta_y+=hy[iby];
      }
 
-     hix[0]=hx[0];
+   
      hiy[0]=hy[0];
 
-     for (int iby=1; iby<nbeta; iby++) {
-       hix[iby]=hix[iby-1]+hx[iby];
+     for (int iby=1; iby<nbetaY; iby++) {
        hiy[iby]=hiy[iby-1]+hy[iby];
      }
 
-     // ii=0;
-     tot_eta_x=hix[nbeta-1]+1;
-     tot_eta_y=hiy[nbeta-1]+1;
+     tot_eta_y=hiy[nbetaY-1]+1;
      
-     for (int ibx=0; ibx<nbeta; ibx++) {
-       if (tot_eta_x<=0) {
-	 hhx[ibx+ib*nbeta]=-1;
-	 //ii=(ibx)/nbeta;
-       } else //if (hix[ibx]>(ii+1)*tot_eta_x*bsize) 
-	 { 
-	   //if (hix[ibx]>tot_eta_x*(ii+1)/nSubPixels) ii++;
-	   hhx[ibx+ib*nbeta]=hix[ibx]/tot_eta_x;
-	 }
-     }
-     /* if (ii!=(nSubPixels-1)) */
-     /*   cout << ib << " x " <<  tot_eta_x << " " << (ii+1)*tot_eta_x*bsize << " " << ii << " " << hix[nbeta-1]<< endl; */
-     
-     //ii=0;
-     
-     for (int ibx=0; ibx<nbeta; ibx++) {
+     for (int iby=0; iby<nbetaY; iby++) {
        if (tot_eta_y<=0) {
-	 hhy[ib+ibx*nbeta]=-1;
+	 hhy[ib+iby*nbetaX]=-1;
 	 //ii=(ibx*nSubPixels)/nbeta;
        } else {   
 	 //if (hiy[ibx]>tot_eta_y*(ii+1)/nSubPixels) ii++;
-	 hhy[ib+ibx*nbeta]=hiy[ibx]/tot_eta_y;
+	 hhy[ib+iby*nbetaX]=hiy[iby]/tot_eta_y;
        }
      }
    }
 
 
+
+   for (int ib=0; ib<nbetaY; ib++) {
+
+     for (int ibx=0; ibx<nbetaX; ibx++) {
+       etax=etamin+ibx*etastepX;
+       //cout << etax << endl;
+       if (etax>=0 && etax<=1)
+	 hx[ibx]=heta[ibx+ib*nbetaX];
+       else {
+	 hx[ibx]=0;
+       }
+     }
+     hix[0]=hx[0];
+       
+     for (int ibx=1; ibx<nbetaX; ibx++) {
+       hix[ibx]=hix[ibx-1]+hx[ibx];
+     }
+
+  
+     tot_eta_x=hix[nbetaX-1]+1;
+     
+     for (int ibx=0; ibx<nbetaX; ibx++) {
+       if (tot_eta_x<=0) {
+	 hhx[ibx+ib*nbetaX]=-1;
+       } 
+       else { 
+	 hhx[ibx+ib*nbetaX]=hix[ibx]/tot_eta_x;
+       }
+     }
+     
+
+     
+     for (int ibx=0; ibx<nbetaX; ibx++) {
+       if (tot_eta_x<=0) {
+	 hhx[ibx+ib*nbetaX]=-1;
+       } else	 { 
+	 //if (hix[ibx]>tot_eta_x*(ii+1)/nSubPixels) ii++;
+	 hhx[ibx+ib*nbetaX]=hix[ibx]/tot_eta_x;
+       }
+     }
+     
+   }
+
+     
    int ibx, iby, ib; 
    
    iby=0;
-   while (hhx[iby*nbeta+nbeta/2]<0) iby++;
+   while (hhx[iby*nbetaY+nbetaY/2]<0) iby++;
    for (ib=0; ib<iby;ib++) {
-     for (ibx=0; ibx<nbeta;ibx++)
-       hhx[ibx+nbeta*ib]=hhx[ibx+nbeta*iby];
+     for (ibx=0; ibx<nbetaX;ibx++)
+       hhx[ibx+nbetaX*ib]=hhx[ibx+nbetaX*iby];
    }
-   iby=nbeta-1;
+   iby=nbetaY-1;
    
-   while (hhx[iby*nbeta+nbeta/2]<0) iby--;
-   for (ib=iby+1; ib<nbeta;ib++) {
-     for (ibx=0; ibx<nbeta;ibx++)
-       hhx[ibx+nbeta*ib]=hhx[ibx+nbeta*iby];
+   while (hhx[iby*nbetaY+nbetaY/2]<0) iby--;
+   for (ib=iby+1; ib<nbetaY;ib++) {
+     for (ibx=0; ibx<nbetaX;ibx++)
+       hhx[ibx+nbetaX*ib]=hhx[ibx+nbetaX*iby];
    }
    
    iby=0;
-   while (hhy[nbeta/2*nbeta+iby]<0) iby++;
+   while (hhy[nbetaX/2*nbetaX+iby]<0) iby++;
    for (ib=0; ib<iby;ib++) {
-     for (ibx=0; ibx<nbeta;ibx++)
-       hhy[ib+nbeta*ibx]=hhy[iby+nbeta*ibx];
+     for (ibx=0; ibx<nbetaY;ibx++)
+       hhy[ib+nbetaX*ibx]=hhy[iby+nbetaX*ibx];
    }
-   iby=nbeta-1;
+   iby=nbetaX-1;
    
-   while (hhy[nbeta/2*nbeta+iby]<0) iby--;
-   for (ib=iby+1; ib<nbeta;ib++) {
-     for (ibx=0; ibx<nbeta;ibx++)
-       hhy[ib+nbeta*ibx]=hhy[iby+nbeta*ibx];
+   while (hhy[nbetaX/2*nbetaX+iby]<0) iby--;
+   for (ib=iby+1; ib<nbetaX;ib++) {
+     for (ibx=0; ibx<nbetaY;ibx++)
+       hhy[ib+nbetaX*ibx]=hhy[iby+nbetaX*ibx];
    }
 
 
@@ -156,9 +170,16 @@ class etaInterpolationPosXY : public virtual etaInterpolationBase{
 
 };
 
+
+
+
+
+
+
+
 class eta2InterpolationPosXY : public virtual eta2InterpolationBase, public virtual etaInterpolationPosXY {
  public:
- eta2InterpolationPosXY(int nx=400, int ny=400, int ns=25, int nb=-1, double emin=1, double emax=0) : etaInterpolationBase(nx,ny,ns, nb, emin,emax),eta2InterpolationBase(nx,ny,ns, nb, emin,emax),etaInterpolationPosXY(nx,ny,ns, nb, emin,emax){
+ eta2InterpolationPosXY(int nx=400, int ny=400, int ns=25, int nsy=25, int nb=-1, int nby=-1, double emin=1, double emax=0) : etaInterpolationBase(nx,ny, ns, nsy, nb, nby, emin, emax),eta2InterpolationBase(nx,ny, ns, nsy, nb, nby, emin, emax),etaInterpolationPosXY(nx,ny, ns, nsy, nb, nby, emin, emax){
     //  cout << "e2pxy " << nb << " " << emin << " " << emax << endl; 
   };
  
@@ -172,8 +193,8 @@ class eta2InterpolationPosXY : public virtual eta2InterpolationBase, public virt
 
 class eta3InterpolationPosXY : public virtual eta3InterpolationBase, public virtual etaInterpolationPosXY {
  public:
- eta3InterpolationPosXY(int nx=400, int ny=400, int ns=25, int nb=-1, double emin=1, double emax=0) : etaInterpolationBase(nx,ny,ns, nb, emin,emax),eta3InterpolationBase(nx,ny,ns, nb, emin,emax), etaInterpolationPosXY(nx,ny,ns, nb, emin,emax){
-      cout << "e3pxy " << nbeta << " " << etamin << " " << etamax << " " << nSubPixels<< endl;  
+ eta3InterpolationPosXY(int nx=400, int ny=400, int ns=25, int nsy=25, int nb=-1, int nby=-1, double emin=1, double emax=0) : etaInterpolationBase(nx,ny, ns, nsy, nb, nby, emin, emax),eta3InterpolationBase(nx,ny, ns, nsy, nb, nby, emin, emax), etaInterpolationPosXY(nx,ny, ns, nsy, nb, nby, emin, emax){
+    //   cout << "e3pxy " << nbeta << " " << etamin << " " << etamax << " " << nSubPixels<< endl;  
   };
 
  eta3InterpolationPosXY(eta3InterpolationPosXY *orig): etaInterpolationBase(orig), etaInterpolationPosXY(orig)  {};

slsDetectorCalibration/interpolations/slsInterpolation.h

@@ -29,19 +29,21 @@ class slsInterpolation
 {
 
  public:
- slsInterpolation(int nx=400, int ny=400, int ns=25) :nPixelsX(nx), nPixelsY(ny),  nSubPixels(ns), id(0) {
+ slsInterpolation(int nx=400, int ny=400, int ns=25, int nsy=-1) :nPixelsX(nx), nPixelsY(ny),  nSubPixelsX(ns), nSubPixelsY(nsy),id(0) {
    
- hint=new int[ns*nx*ns*ny];
+    if (nSubPixelsY<=0) nSubPixelsY=nSubPixelsX;
+    hint=new int[nSubPixelsX*nx*nSubPixelsY*ny];
 
 };
   
  slsInterpolation(slsInterpolation *orig){
    nPixelsX=orig->nPixelsX;
    nPixelsY=orig->nPixelsY;
-   nSubPixels=orig->nSubPixels;
+   nSubPixelsX=orig->nSubPixelsX;
+   nSubPixelsY=orig->nSubPixelsY;
    
-   hint=new int[nSubPixels*nPixelsX*nSubPixels*nPixelsY];
-   memcpy(hint, orig->hint,nSubPixels*nPixelsX*nSubPixels*nPixelsY*sizeof(int));
+   hint=new int[nSubPixelsX*nPixelsX*nSubPixelsY*nPixelsY];
+   memcpy(hint, orig->hint,nSubPixelsX*nPixelsX*nSubPixelsY*nPixelsY*sizeof(int));
  
  };
 
@@ -51,23 +53,37 @@ class slsInterpolation
    return new slsInterpolation(this);
    }*/
 
-  int getNSubPixels() {return nSubPixels;};
+  int getNSubPixelsX() {return nSubPixelsX;};
+  int getNSubPixelsY() {return nSubPixelsY;};
+  int getNSubPixels() {if (nSubPixelsX==nSubPixelsY) return nSubPixelsX; else return 0;};
+  void getNSubPixels(int &nsx, int &nsy) {nsx=nSubPixelsX; nsy=nsx=nSubPixelsY;}
 
+  void setNSubPixels(int ns, int nsy=-1)   {
    
-  int setNSubPixels(int ns)   {
-    if (ns>0 && ns!=nSubPixels) {
       delete [] hint;
-      nSubPixels=ns;
-      hint=new int[nSubPixels*nPixelsX*nSubPixels*nPixelsY];
-    }
-    return nSubPixels;
+      nSubPixelsX=ns;
+      if (nsy>0)  nSubPixelsY=nsy;
+      else nSubPixelsY=ns;
+      
+      hint=new int[nSubPixelsX*nPixelsX*nSubPixelsY*nPixelsY];
+      
+      //return nSubPixels;
   }
 
-  int getImageSize(int &nnx, int &nny, int &ns) {
-    nnx=nSubPixels*nPixelsX;
-    nny=nSubPixels*nPixelsY;
-    ns=nSubPixels;
-    return nSubPixels*nSubPixels*nPixelsX*nPixelsY;
+  
+
+
+  int getImageSize(int &nnx, int &nny, int &nsx, int &nsy) {
+    nnx=nSubPixelsX*nPixelsX;
+    nny=nSubPixelsY*nPixelsY;
+    nsx=nSubPixelsX;
+    nsy=nSubPixelsY;
+    return nSubPixelsX*nSubPixelsY*nPixelsX*nPixelsY;
+  };
+  
+
+  int getImageSize() {
+    return nSubPixelsX*nSubPixelsY*nPixelsX*nPixelsY;
   };
   
   
@@ -92,14 +108,14 @@ class slsInterpolation
     //cout << "!" <<endl;
     float *gm=NULL;
     int *dummy=getInterpolatedImage();
-    gm=new float[ nSubPixels*  nSubPixels* nPixelsX*nPixelsY];
+    gm=new float[ nSubPixelsX*  nSubPixelsY* nPixelsX*nPixelsY];
     if (gm) {
-      for (int ix=0; ix<nPixelsX*nSubPixels; ix++) {
-	for (int iy=0; iy<nPixelsY*nSubPixels; iy++) {
-	  gm[iy*nPixelsX*nSubPixels+ix]=dummy[iy*nPixelsX*nSubPixels+ix];
+      for (int ix=0; ix<nPixelsX*nSubPixelsX; ix++) {
+	for (int iy=0; iy<nPixelsY*nSubPixelsY; iy++) {
+	  gm[iy*nPixelsX*nSubPixelsX+ix]=dummy[iy*nPixelsX*nSubPixelsX+ix];
 	}
       }
-      WriteToTiff(gm, imgname,nSubPixels* nPixelsX ,nSubPixels* nPixelsY); 
+      WriteToTiff(gm, imgname,nSubPixelsY* nPixelsX ,nSubPixelsY* nPixelsY); 
       delete [] gm;
     } else cout << "Could not allocate float image " << endl;
     return NULL;    
@@ -120,9 +136,9 @@ class slsInterpolation
   virtual void clearInterpolatedImage() {
 
 
-      for (int ix=0; ix<nPixelsX*nSubPixels; ix++) {
-	for (int iy=0; iy<nPixelsY*nSubPixels; iy++) {
-	  hint[iy*nPixelsX*nSubPixels+ix]=0;
+      for (int ix=0; ix<nPixelsX*nSubPixelsX; ix++) {
+	for (int iy=0; iy<nPixelsY*nSubPixelsY; iy++) {
+	  hint[iy*nPixelsX*nSubPixelsX+ix]=0;
 	}
       }
 
@@ -133,11 +149,11 @@ class slsInterpolation
 
 
   virtual int *addToImage(double int_x, double int_y){ 
-    int iy=((double)nSubPixels)*int_y; 
-    int ix=((double)nSubPixels)*int_x; 
-     if (ix>=0 && ix<(nPixelsX*nSubPixels) && iy<(nSubPixels*nPixelsY) && iy>=0 ){
+    int iy=((double)nSubPixelsY)*int_y; 
+    int ix=((double)nSubPixelsX)*int_x; 
+     if (ix>=0 && ix<(nPixelsX*nSubPixelsX) && iy<(nSubPixelsY*nPixelsY) && iy>=0 ){
        // cout << int_x << " " << int_y << " " << "  " << ix << " " << iy << " " << ix+iy*nPixelsX*nSubPixels << " " << hint[ix+iy*nPixelsX*nSubPixels];
-       (*(hint+ix+iy*nPixelsX*nSubPixels))+=1; 
+       (*(hint+ix+iy*nPixelsX*nSubPixelsX))+=1; 
        // cout << " " << hint[ix+iy*nPixelsX*nSubPixels] << endl;
      }// else
       // cout << "bad! "<< int_x << " " << int_y << " " << "  " << ix << " " << iy << " " << ix+iy*nPixelsX*nSubPixels << endl;
@@ -180,11 +196,12 @@ class slsInterpolation
     /* cluster[2]=cl+6; */
     
     sum=0;
+    int xoff=0, yoff=0;
+#ifndef WRITE_QUAD 
     double sumBL=0;
     double sumTL=0;
     double sumBR=0;
     double sumTR=0;
-    int xoff=0, yoff=0;
     for (int ix=0; ix<3; ix++) {
       for (int iy=0; iy<3; iy++) {
 	sum+=cl[ix+3*iy];
@@ -204,34 +221,95 @@ class slsInterpolation
 
     
     if(sumTL  >= totquad){
-      /* sDum[0][0] = cluster[1][0]; sDum[1][0] = cluster[2][0]; */
-      /* sDum[0][1] = cluster[1][1]; sDum[1][1] = cluster[2][1]; */
-      
+/* #ifdef WRITE_QUAD */
+/*       /\* sDum[0][0] = cluster[1][0]; sDum[1][0] = cluster[2][0]; *\/ */
+/*       /\* sDum[0][1] = cluster[1][1]; sDum[1][1] = cluster[2][1]; *\/ */
+/*       if (sumTL  ==sum) { */
+/* #endif */
       corner = TOP_LEFT;
       totquad=sumTL;
       xoff=0;
       yoff=1;
+/* #ifdef WRITE_QUAD */
+/*       } */
+/* #endif */
     } 
 
     if(sumBR  >= totquad){
       /* sDum[0][0] = cluster[0][1]; sDum[1][0] = cluster[1][1]; */
       /* sDum[0][1] = cluster[0][2]; sDum[1][1] = cluster[1][2]; */
       
+/* #ifdef WRITE_QUAD */
+/*       /\* sDum[0][0] = cluster[1][0]; sDum[1][0] = cluster[2][0]; *\/ */
+/*       /\* sDum[0][1] = cluster[1][1]; sDum[1][1] = cluster[2][1]; *\/ */
+/*       if (sumBR   ==sum) { */
+/* #endif */
+      corner = BOTTOM_RIGHT;
       xoff=1;
       yoff=0;
-      corner = BOTTOM_RIGHT;
       totquad=sumBR;
+/* #ifdef WRITE_QUAD */
+/*       } */
+/* #endif */
     }
     
     if(sumTR  >= totquad){
+/* #ifdef WRITE_QUAD */
+/*       /\* sDum[0][0] = cluster[1][0]; sDum[1][0] = cluster[2][0]; *\/ */
+/*       /\* sDum[0][1] = cluster[1][1]; sDum[1][1] = cluster[2][1]; *\/ */
+/*       if (sumTR ==sum) { */
+/* #endif */
       xoff=1;
       yoff=1;
       /* sDum[0][0] = cluster[1][1]; sDum[1][0] = cluster[2][1]; */
       /* sDum[0][1] = cluster[1][2]; sDum[1][1] = cluster[2][2]; */
       corner = TOP_RIGHT;
       totquad=sumTR;
+/* #ifdef WRITE_QUAD */
+/*       } */
+/* #endif */
     }
  
+#endif    
+#ifdef WRITE_QUAD    
+   
+    double sumB=0;
+    double sumT=0;
+    double sumR=0;
+    double sumL=0;
+
+    for (int ix=0; ix<3; ix++) {
+      for (int iy=0; iy<3; iy++) {
+	sum+=cl[ix+3*iy];
+	if (ix<1 ) sumL+=cl[ix+iy*3];
+	if (ix>1) sumR+=cl[ix+iy*3];
+	if (iy<1) sumB=cl[ix+iy*3];
+	if (iy>1) sumT+=cl[ix+iy*3];
+      }
+    } 
+    
+    totquad=sum;
+    if ( sumT==0 && sumR==0) {
+        corner = BOTTOM_LEFT;
+	xoff=0;
+	yoff=0;
+    } else if ( sumB==0 && sumR==0 ) {
+        corner = TOP_LEFT;
+      xoff=0;
+      yoff=1;
+    } else if ( sumT==0 && sumL==0) {
+      corner = BOTTOM_RIGHT;
+      xoff=1;
+      yoff=0;
+    } else if ( sumB==0 && sumL==0) {
+      xoff=1;
+      yoff=1;
+      corner = TOP_RIGHT;
+    } else
+      printf("** bad 2x2 cluster!\n");
+
+#endif
+
 
     for (int ix=0; ix<2; ix++) {
       for (int iy=0; iy<2; iy++) {
@@ -495,7 +573,7 @@ class slsInterpolation
 
  protected:
   int nPixelsX, nPixelsY;
-  int nSubPixels;
+  int nSubPixelsX, nSubPixelsY;
   int id;
   int *hint;
 };

slsDetectorCalibration/moenchExecutables/Makefile.zmq

@@ -1,18 +1,21 @@
 
 INCDIR=   -I. -I../dataStructures ../tiffIO.cpp -I../ -I../interpolations/ -I../../slsSupportLib/include/ -I../../slsReceiverSoftware/include/ -I../../libs/rapidjson/
-LDFLAG= -L/usr/lib64/ -lpthread -lm  -lstdc++  -lzmq -pthread -lrt -ltiff   -O3 -g -std=c++11 -Wall
+LDFLAG= -L/usr/lib64/ -lpthread -lm  -lstdc++  -lzmq -pthread -lrt -ltiff   -O3  -std=c++11 -Wall -L../../build/bin/ -lSlsSupport
 #-L../../bin -lhdf5  -L.
 
 #DESTDIR?=../bin
 
-all:  moenchZmqProcess moenchZmqProcessCtbGui
-
+all:  moenchZmqProcess moenchZmq04Process
+ #moenchZmqProcessCtbGui
 
 moenchZmqProcess:  moenchZmqProcess.cpp   clean
 		      g++ -o moenchZmqProcess  moenchZmqProcess.cpp  $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)  -DNEWZMQ -DINTERP 
 
-moenchZmqProcessCtbGui:  moenchZmqProcess.cpp   clean
-		      g++ -o moenchZmqProcessCtbGui  moenchZmqProcess.cpp  $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)  -DNEWZMQ -DINTERP -DCTBGUI
+moenchZmq04Process:  moenchZmqProcess.cpp   clean
+		      g++ -o moench04ZmqProcess  moenchZmqProcess.cpp  $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)  -DNEWZMQ -DINTERP -DMOENCH04 
+
+#moenchZmqProcessCtbGui:  moenchZmqProcess.cpp   clean
+#		      g++ -o moenchZmqProcessCtbGui  moenchZmqProcess.cpp  $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)  -DNEWZMQ -DINTERP -DCTBGUI
 
 clean: 	
 	rm -f  moenchZmqProcess  

slsDetectorCalibration/moenchExecutables/moench03Interpolation.cpp

@@ -16,7 +16,8 @@
 
 //#include "etaInterpolationPosXY.h"
 #include "noInterpolation.h"
-#include "etaInterpolationCleverAdaptiveBins.h"
+#include "etaInterpolationPosXY.h"
+//#include "etaInterpolationCleverAdaptiveBins.h"
 //#include "etaInterpolationRandomBins.h"
 using namespace std;
 #define NC 400

slsDetectorCalibration/moenchExecutables/moenchZmqProcess.cpp

@@ -1,13 +1,24 @@
-#define WRITE_QUAD
+//#define WRITE_QUAD
 #define DEVELOPER
-
+#undef CORR
 #define C_GHOST 0.0004
 
 #define CM_ROWS 20
 
 #include "sls_detector_defs.h"
 #include "ZmqSocket.h"
+#ifndef RECT
+#ifndef MOENCH04
 #include "moench03T1ZmqDataNew.h"
+#endif
+#ifdef MOENCH04
+#include "moench04CtbZmq10GbData.h"
+#endif
+
+#endif
+#ifdef RECT
+#include "moench03T1ZmqDataNewRect.h"
+#endif
 #include "moench03GhostSummation.h"
 #include "moench03CommonMode.h"
 #include <vector> 
@@ -31,12 +42,12 @@
 #include "ansi.h"
 #include <iostream>
 
-//#include <chrono>
+#include <chrono>
 #include <ctime> // time_t
 #include <cstdio>
 
 using namespace std;
-//using namespace std::chrono;
+using namespace std::chrono;
 
 //#define SLS_DETECTOR_JSON_HEADER_VERSION 0x2
 
@@ -49,10 +60,11 @@ int main(int argc, char *argv[]) {
  */
   FILE *of=NULL;
   int fifosize=5000;
-  int etabins=1000;//nsubpix*2*100;
+  int etabins=1000, etabinsy=1000;//nsubpix*2*100;
   double etamin=-1, etamax=2;
-  int nSubPixels=2;
+  int nSubPixelsX=2;
   //	int emin, emax;
+  int nSubPixelsY=2;
 	// help
   if (argc < 3 ) {
     cprintf(RED, "Help: ./trial [receive socket ip] [receive starting port number] [send_socket ip] [send starting port number] [nthreads] [nsubpix] [gainmap]  [etafile]\n");
@@ -67,21 +79,20 @@ int main(int argc, char *argv[]) {
   char* socketip2 = 0;
   uint32_t portnum2 = 0;
 
+  zmqHeader zHeader, outHeader;
+  zHeader.jsonversion = SLS_DETECTOR_JSON_HEADER_VERSION;
+  outHeader.jsonversion = SLS_DETECTOR_JSON_HEADER_VERSION;
+
   uint32_t nSigma=5;
 
   int ok;
 
-  // high_resolution_clock::time_point t1;
-  // high_resolution_clock::time_point t2 ;
-  time_t begin,end,finished;
+  high_resolution_clock::time_point t1;
+  high_resolution_clock::time_point t2 ;
+    std::chrono::steady_clock::time_point begin,end,finished;
+      //time_t begin,end,finished;
   int rms=0;
   
-  int nped=1000, nped0=100;
-
-#ifdef PTC
-  nped=10000;
-  nped0=10000;
-#endif
 
 
   if (argc > 4) {
@@ -101,10 +112,14 @@ int main(int argc, char *argv[]) {
     nthreads=atoi(argv[5]);
 
   cout << "Number of threads is: " << nthreads << endl;
-  if (argc>6)
-    nSubPixels=atoi(argv[6]);
-  cout << "Number of subpixels is: " << nSubPixels << endl;
-  
+  if (argc>6) {
+    nSubPixelsX=atoi(argv[6]);
+    nSubPixelsY=nSubPixelsX;
+#ifdef RECT
+    nSubPixelsX=2;
+#endif
+  }
+  cout << "Number of subpixels is: " << nSubPixelsX << " " <<  nSubPixelsY << endl;
 
   char *gainfname=NULL;
   if (argc>7) {
@@ -119,12 +134,17 @@ int main(int argc, char *argv[]) {
   }
 
   //slsDetectorData *det=new moench03T1ZmqDataNew(); 
-  moench03T1ZmqDataNew *det=new moench03T1ZmqDataNew(5000,sizeof(int)); 
+#ifndef MOENCH04
+  moench03T1ZmqDataNew *det=new moench03T1ZmqDataNew(); 
+#endif
+#ifdef MOENCH04
+  moench04CtbZmq10GbData *det=new moench04CtbZmq10GbData(); 
+#endif
   cout << endl << " det" <<endl;
   int npx, npy;
   det->getDetectorSize(npx, npy);
 
-
+  int send_something=0;
 
 
   int maxSize = npx*npy*2;//32*2*8192;//5000;//atoi(argv[3]);
@@ -135,17 +155,16 @@ int main(int argc, char *argv[]) {
   char dummybuff[size];
   
 
-  int ncol_cm=CM_ROWS;
-  double xt_ghost=C_GHOST;
-
-
   moench03CommonMode *cm=NULL;
   moench03GhostSummation *gs=NULL;
 #ifdef CORR
-  cm=new moench03CommonMode(ncol_cm);
-  gs=new moench03GhostSummation(det, xt_ghost);
-#endif
   
+  //int ncol_cm=CM_ROWS;
+  //double xt_ghost=C_GHOST;
+
+  cm=new moench03CommonMode(CM_ROWS);
+  gs=new moench03GhostSummation(det, C_GHOST);
+#endif
   double *gainmap=NULL;
   float *gm;
   double *gmap=NULL;
@@ -173,18 +192,18 @@ int main(int argc, char *argv[]) {
 
   //analogDetector<uint16_t> *filter=new analogDetector<uint16_t>(det,1,NULL,1000);
 #ifndef INTERP
-  singlePhotonDetector *filter=new singlePhotonDetector(det,3, nSigma, 1, cm, nped, nped0, -1, -1, gainmap, gs);
+  singlePhotonDetector *filter=new singlePhotonDetector(det,3, nSigma, 1, cm, 1000, 100, -1, -1, gainmap, gs);
 
     multiThreadedCountingDetector *mt=new multiThreadedCountingDetector(filter,nthreads,fifosize);
 
     // multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
 #endif
 #ifdef INTERP
-  eta2InterpolationPosXY *interp=new eta2InterpolationPosXY(npx, npy, nSubPixels, etabins, etamin, etamax);
+    eta2InterpolationPosXY *interp=new eta2InterpolationPosXY(npx, npy, nSubPixelsX,nSubPixelsY, etabins,  etabinsy, etamin, etamax);
 
   if (etafname) interp->readFlatField(etafname);
 
-  interpolatingDetector *filter=new interpolatingDetector(det,interp, nSigma, 1, cm,  nped, nped0, -1, -1, gainmap, gs);
+  interpolatingDetector *filter=new interpolatingDetector(det,interp, nSigma, 1, cm,  1000, 10, -1, -1, gainmap, gs);
   multiThreadedInterpolatingDetector *mt=new multiThreadedInterpolatingDetector(filter,nthreads,fifosize);
 #endif
 
@@ -275,7 +294,17 @@ int main(int argc, char *argv[]) {
 	// header variables
 	uint64_t acqIndex = -1;
 	uint64_t frameIndex = -1;
-	//uint32_t subFrameIndex = -1;
+#ifdef MOENCH_BRANCH
+ 	uint32_t subFrameIndex = -1;
+	int* flippedData = 0;
+#endif
+	
+	uint64_t subframes=0;
+	//uint64_t  isubframe=0;
+	uint64_t  insubframe=0;
+	double subnorm=1;
+	uint64_t  f0=-1, nsubframes=0, nnsubframe=0;
+
 	uint64_t fileindex = -1;
 	string filename = "";
 	//	char* image = new char[size];
@@ -285,10 +314,10 @@ int main(int argc, char *argv[]) {
 	int iframe=0;
 	char ofname[10000];
 		    
-	char fname[10000];
+	string fname;
 	//	int length;
-	int *detimage;
-	int nnx, nny,nns;
+	int *detimage=NULL;
+	int nnx, nny,nnsx, nnsy;
 	//uint32_t imageSize = 0, nPixelsX = 0, nPixelsY = 0, 
 	//uint32_t  dynamicRange = 0;
 	// infinite loop
@@ -296,20 +325,20 @@ int main(int argc, char *argv[]) {
 	uint64_t bunchId = 0;
 	uint64_t timestamp = 0;
 	int16_t modId = 0;
+	uint32_t expLength=0;
 	uint16_t xCoord = 0;
 	uint16_t yCoord = 0;
-	uint16_t zCoord = 0;
+	//uint16_t zCoord = 0;
 	uint32_t debug = 0;
 	//uint32_t dr = 16;
 	//int16_t *dout;//=new int16_t [nnx*nny];
 	uint32_t dr = 32;
 	int32_t *dout=NULL;//=new int32_t [nnx*nny];
+	float *doutf=NULL;//=new int32_t [nnx*nny];
 	uint16_t roundRNumber = 0;
 	uint8_t detType = 0;
 	uint8_t version = 0;
-	//	int* flippedData = 0;
-	string* additionalJsonHeader = 0;
-	//char* additionalJsonHeader = 0;
+	string additionalJsonHeader="" ;
 
 	int32_t threshold=0;
 	
@@ -327,9 +356,10 @@ int main(int argc, char *argv[]) {
 	frameMode fMode=eFrame;
 	double *ped;
 
-	filter->getImageSize(nnx, nny,nns);
+	filter->getImageSize(nnx, nny,nnsx, nnsy);
 
 	
+	std::map<std::string, std::string> addJsonHeader;
 
 
 
@@ -339,21 +369,21 @@ int main(int argc, char *argv[]) {
 
 	  //  cout << "+++++++++++++++++++++++++++++++LOOP" << endl;
 		// get header, (if dummy, fail is on parse error or end of acquisition)
-#ifndef NEWZMQ	
-	  if (!zmqsocket->ReceiveHeader(0, acqIndex, frameIndex, subframeIndex, filename, fileindex)){
-#endif
 
-#ifdef NEWZMQ	
-	    rapidjson::Document doc;
-	    if (!zmqsocket->ReceiveHeader(0, doc, SLS_DETECTOR_JSON_HEADER_VERSION)) {
+
+
+	  //  rapidjson::Document doc;
+	    if (!zmqsocket->ReceiveHeader(0, zHeader, SLS_DETECTOR_JSON_HEADER_VERSION)) {
 	      /* zmqsocket->CloseHeaderMessage();*/
 
-#endif
 	    //	  if (!zmqsocket->ReceiveHeader(0, acqIndex, frameIndex, subframeIndex, filename, fileindex)) {
-	      //  cprintf(RED, "Got Dummy\n");
+	       cprintf(RED, "Got Dummy\n");
 	      //   t1=high_resolution_clock::now();
-	      time(&end);
+	       //time(&end);
+	       //cout << "Measurement lasted " << difftime(end,begin) << endl;
 
+	       end = std::chrono::steady_clock::now();
+	       cout << "Measurement lasted " << (end-begin).count()*0.000001 << " ms" << endl;
 
 	    while (mt->isBusy()) {;}//wait until all data are processed from the queues
 	    
@@ -364,31 +394,68 @@ int main(int argc, char *argv[]) {
 	    if (newFrame>0) {
 	      cprintf(RED,"DIDn't receive any data!\n");
 	    if (send) { 
-	      zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
+	      
+	      //zHeader.data = false;
+	      outHeader.data=false;
+	      //  zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
+	      zmqsocket2->SendHeader(0,outHeader);
 	      cprintf(RED, "Sent Dummy\n");
 	    }
 	    } else {
+	      send_something=0;
 	      if (fMode==ePedestal) {
-	      sprintf(ofname,"%s_%ld_ped.tiff",fname,fileindex);
+		sprintf(ofname,"%s_%ld_ped.tiff",fname.c_str(),fileindex);
 		mt->writePedestal(ofname);
 		cout << "Writing pedestal to " << ofname << endl;
 		if (rms){
-	      sprintf(ofname,"%s_%ld_var.tiff",fname,fileindex);
+		  sprintf(ofname,"%s_%ld_var.tiff",fname.c_str(),fileindex);
 		  mt->writePedestalRMS(ofname);
-	       cout << "Writing pedestal variance to " << ofname << endl;
+		  
 		} 
+		send_something=1;
 	      }
 #ifdef INTERP
 	      else if  (fMode==eFlat) {
 		mt->prepareInterpolation(ok);
-	      sprintf(ofname,"%s_%ld_eta.tiff",fname,fileindex);
+		sprintf(ofname,"%s_%ld_eta.tiff",fname.c_str(),fileindex);
 		mt->writeFlatField(ofname);
 		cout << "Writing eta to " << ofname << endl;
+		send_something=1;
 	      }
 #endif
 	      else {
-	      sprintf(ofname,"%s_%ld.tiff",fname,fileindex);
+		if (subframes>0 ) { 
+		  if (insubframe>0) {
+		    sprintf(ofname,"%s_sf%ld_%ld.tiff",fname.c_str(),nnsubframe,fileindex);
+		    //		  mt->writeImage(ofname);
+		    doutf= new float[nnx*nny];
+		    if (subframes>0 && insubframe!=subframes && insubframe>0)
+		      subnorm=((double)subframes)/((double)insubframe);
+		    else
+		      subnorm=1.;
+		    for (int ix=0; ix<nnx*nny; ix++) {
+		    doutf[ix]=detimage[ix]*subnorm;
+		    if (doutf[ix]<0) doutf[ix]=0;
+		    }
+	    
+		    cout << "Writing image to " << ofname << endl;
+		    
+		    WriteToTiff(doutf,ofname ,nnx, nny); 
+		    
+		    if (doutf)
+		      delete [] doutf;
+		    doutf=NULL;
+		    
+		    nsubframes++;
+		    insubframe=0;
+		    send_something=1;
+		  }
+		} else {
+		  sprintf(ofname,"%s_%ld.tiff",fname.c_str(),fileindex);
 		  mt->writeImage(ofname);
+		  send_something=1;
+		}
+		
 		cout << "Writing image to " << ofname << endl;
 	      }
 	      //  cout << nns*nnx*nny*nns*dr/8 << " " << length << endl;
@@ -397,11 +464,13 @@ int main(int argc, char *argv[]) {
 	      
 	    if (fMode==ePedestal) {   
 	      cprintf(MAGENTA,"Get pedestal!\n");
-	      nns=1;
+	      nnsx=1;
+	      nnsy=1;
+	      
 	      nnx=npx;
 	      nny=npy;
 	      //dout= new int16_t[nnx*nny*nns*nns];
-	      dout= new int32_t[nnx*nny*nns*nns];
+	      dout= new int32_t[nnx*nny*nnsx*nnsy];
 	      // cout << "get pedestal " << endl;
 	      ped=mt->getPedestal();
 	      // cout << "got pedestal " << endl;
@@ -409,7 +478,7 @@ int main(int argc, char *argv[]) {
 	
 		  dout[ix]=ped[ix];
 		  // if (ix<100*400)
-		  // cout << ix << " " << ped[ix] << " "<< dout[ix] << endl;
+		  //   cout << ix << " " << ped[ix] << endl;
 	      }
 	      
 	    }
@@ -427,15 +496,19 @@ int main(int argc, char *argv[]) {
 	     }
 #endif
 	    else {
-	      detimage=mt->getImage(nnx,nny,nns);
+	      detimage=mt->getImage(nnx,nny,nnsx, nnsy);
 	      cprintf(MAGENTA,"Get image!\n");
-	      cout << nnx << " " << nny << " " << nns << endl;
+	      cout << nnx << " " << nny << " " << nnsx << " " << nnsy << endl;
 	      // nns=1;
 	      // nnx=npx;
 	      // nny=npy;
 	      // nnx=nnx*nns;
 	      //nny=nny*nns;
 	      dout= new int32_t[nnx*nny];
+	      if (subframes>0 && insubframe!=subframes && insubframe>0)
+		subnorm=((double)subframes)/((double)insubframe);
+	      else
+		subnorm=1.;
 	      for (int ix=0; ix<nnx*nny; ix++) {
 		// for (int iy=0; iy<nny*nns; iy++) {
 		 //  for (int isx=0; isx<nns; isx++) {
@@ -447,48 +520,49 @@ int main(int argc, char *argv[]) {
 		    
 		//   }
 		// }
-		dout[ix]=detimage[ix];
+		  dout[ix]=detimage[ix]*subnorm;
 		  if (dout[ix]<0) dout[ix]=0;
 		  //   cout << ix << " " << dout[ix] << endl;
 		  // }
 	      }
 	    }
+	    //if ((insubframe>0 && subframes>0) || (subframes<=0) ){
 
+	    if(send_something) {
 	   
-	    //// int SendHeaderData ( int index, bool dummy, uint32_t jsonversion, uint32_t dynamicrange = 0, uint64_t fileIndex = 0,
-	      // 		uint32_t ndetx = 0, uint32_t ndety = 0, uint32_t npixelsx = 0, uint32_t npixelsy = 0, uint32_t imageSize = 0,
-	      // 		uint64_t acqIndex = 0, uint64_t fIndex = 0, const char* fname = NULL,
-	      // 		uint64_t frameNumber = 0, uint32_t expLength = 0, uint32_t packetNumber = 0,
-	      // 		uint64_t bunchId = 0, uint64_t timestamp = 0,
-	      // 		uint16_t modId = 0, uint16_t row = 0, uint16_t column = 0, uint16_t reserved = 0,
-	      // 		uint32_t debug = 0, uint16_t roundRNumber = 0,
-	      // 		uint8_t detType = 0, uint8_t version = 0, int gapPixelsEnable = 0, int flippedDataX = 0,
-	      // 		char* additionalJsonHeader = 0) {
-
-
-
-	    //  cout << "Sending image size " << nnx << " " << nny << endl;
-
-// #ifndef DEVELOPER
-// #ifndef MOENCH_BRANCH
-// 	    zmqsocket2->SendHeaderData (0, false, SLS_DETECTOR_JSON_HEADER_VERSION, dr, fileindex, 1,1, nnx, nny, nnx*nny*dr/8,acqIndex, frameIndex, fname, acqIndex,0 , packetNumber,bunchId, timestamp, modId, xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, additionalJsonHeader);
-// #endif
-// #endif
-
-
-// #ifdef DEVELOPER
-// #ifdef CTBGUI
-//  	    zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 0,0,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,additionalJsonHeader);
-// #endif
-// #ifndef CTBGUI
- 	    zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 1,1,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,additionalJsonHeader);
-	    //#endif
+	      //  zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 1,1,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,&additionalJsonHeader);   
 	      
+	      outHeader.data=true;
+	      outHeader.dynamicRange=dr;
+	      outHeader.fileIndex=fileindex;
+	      outHeader.ndetx=1;
+	      outHeader.ndety=1;
+	      outHeader.npixelsx=nnx;
+	      outHeader.npixelsy=nny;
+	      outHeader.imageSize=nnx*nny*dr/8;
+	      outHeader.acqIndex=acqIndex;
+	      outHeader.frameIndex=frameIndex;
+	      outHeader.fname=fname;
+	      outHeader.frameNumber=acqIndex;
+	      outHeader.expLength=expLength;
+	      outHeader.packetNumber=packetNumber;
+	      outHeader.bunchId=bunchId;
+	      outHeader.timestamp=timestamp;
+	      outHeader.modId=modId;
+	      outHeader.row=xCoord;
+	      outHeader.column=yCoord;
+	      outHeader.debug=debug;
+	      outHeader.roundRNumber=roundRNumber;
+	      outHeader.detType=detType;
+	      outHeader.version=version;
 	      
+	      zmqsocket2->SendHeader(0,outHeader);
 	      zmqsocket2->SendData((char*)dout,nnx*nny*dr/8);
 	      cprintf(GREEN, "Sent Data\n");
-		
-		zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
+	    }
+	    outHeader.data=false;
+	    zmqsocket2->SendHeader(0,outHeader);
+	    // zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
 	    cprintf(RED, "Sent Dummy\n");
 	    if (dout)
 	      delete [] dout;
@@ -500,49 +574,103 @@ int main(int argc, char *argv[]) {
 	    mt->clearImage();
 	    
 	    newFrame=1;
-	    //t2 = high_resolution_clock::now();
 	    
-	      time(&finished);
-	      //   auto meas_duration = duration_cast<microseconds>( t2 - t0 ).count();
-	      //   auto real_duration = duration_cast<microseconds>( t2 - t1 ).count();
 	    
-	    cout << "Measurement lasted " << difftime(end,begin) << endl;
-	    cout << "Processing lasted " << difftime(finished,begin) << endl;
+	    //time(&finished);
+	    //cout << "Processing lasted " << difftime(finished,begin) << endl;
+	    
+	       finished = std::chrono::steady_clock::now();
+	       cout << "Processing lasted " << (finished-begin).count()*0.000001 << " ms" << endl;
+#ifdef OPTIMIZE
+	    return 0;
+#endif
 	    continue; //continue to not get out
 
 
 	    }
 
-#ifdef NEWZMQ
+	    //#ifdef NEWZMQ
 	    if (newFrame) {
-	      time(&begin);
-	      // t0 = high_resolution_clock::now();
-	      //cout <<"new frame" << endl;
+	      begin = std::chrono::steady_clock::now();
    
-	      //  acqIndex, frameIndex, subframeIndex, filename, fileindex
-	      size       = doc["size"].GetUint();
-	      // multisize  = size;// * zmqsocket->size();
-	      // dynamicRange  = doc["bitmode"].GetUint();
-	      //  nPixelsX = doc["shape"][0].GetUint();
-	      // nPixelsY = doc["shape"][1].GetUint();
-	      filename        = doc["fname"].GetString();
-	      //acqIndex = doc["acqIndex"].GetUint64();
-	      //frameIndex       = doc["fIndex"].GetUint64();
-	      fileindex        = doc["fileIndex"].GetUint64();
-	      //subFrameIndex    = doc["expLength"].GetUint();
-	      //packetNumber=doc["packetNumber"].GetUint();
-	      //bunchId=doc["bunchId"].GetUint();
-	      //timestamp=doc["timestamp"].GetUint();
-	      //modId=doc["modId"].GetUint();
-	      //debug=doc["debug"].GetUint();
-	      //roundRNumber=doc["roundRNumber"].GetUint();
-	      //detType=doc["detType"].GetUint();
-	      //version=doc["version"].GetUint();
+	      size       = zHeader.imageSize;//doc["size"].GetUint();
 	      
+	      // dynamicRange  = zheader.dynamicRange; //doc["bitmode"].GetUint();
+	      // nPixelsX = zHeader.npixelsx; //doc["shape"][0].GetUint();
+	      // nPixelsY = zHeader.npixelsy;// doc["shape"][1].GetUint();
+	      filename        = zHeader.fname;//doc["fname"].GetString();
+	      acqIndex = zHeader.acqIndex; //doc["acqIndex"].GetUint64();
+		// frameIndex       = zHeader.frameIndex;//doc["fIndex"].GetUint64();
+	      fileindex        = zHeader.fileIndex;//doc["fileIndex"].GetUint64();
+	      expLength   = zHeader.expLength;//doc["expLength"].GetUint();
+	      packetNumber=zHeader.packetNumber;//doc["packetNumber"].GetUint();
+	      bunchId=zHeader.bunchId;//doc["bunchId"].GetUint();
+	      timestamp=zHeader.timestamp;//doc["timestamp"].GetUint();
+	      modId=zHeader.modId;//doc["modId"].GetUint();
+	      debug=zHeader.debug;//doc["debug"].GetUint();
+	      //  roundRNumber=r.roundRNumber;//doc["roundRNumber"].GetUint();
+	      detType=zHeader.detType;//doc["detType"].GetUint();
+	      version=zHeader.version;//doc["version"].GetUint();
+	      /*document["bitmode"].GetUint(); zHeader.dynamicRange
+
+document["fileIndex"].GetUint64(); zHeader.fileIndex
+
+document["detshape"][0].GetUint();
+zHeader.ndetx
+
+document["detshape"][1].GetUint();
+zHeader.ndety
+
+document["shape"][0].GetUint();
+zHeader.npixelsx
+
+document["shape"][1].GetUint();
+zHeader.npixelsy
+
+document["size"].GetUint(); zHeader.imageSize
+
+document["acqIndex"].GetUint64(); zHeader.acqIndex
+
+document["frameIndex"].GetUint64(); zHeader.frameIndex
+
+document["fname"].GetString(); zHeader.fname
+
+document["frameNumber"].GetUint64(); zHeader.frameNumber
+
+document["expLength"].GetUint(); zHeader.expLength
+
+document["packetNumber"].GetUint(); zHeader.packetNumber
+
+document["bunchId"].GetUint64(); zHeader.bunchId
+
+document["timestamp"].GetUint64(); zHeader.timestamp
+
+document["modId"].GetUint(); zHeader.modId
+
+document["row"].GetUint(); zHeader.row
+
+document["column"].GetUint(); zHeader.column
+
+document["reserved"].GetUint(); zHeader.reserved
+
+document["debug"].GetUint(); zHeader.debug
+
+document["roundRNumber"].GetUint(); zHeader.roundRNumber
+
+document["detType"].GetUint(); zHeader.detType
+
+document["version"].GetUint(); zHeader.version
+
+document["flippedDataX"].GetUint(); zHeader.flippedDataX
+
+document["quad"].GetUint(); zHeader.quad
+
+document["completeImage"].GetUint(); zHeader.completeImage
+	      */
 	      //dataSize=size;
 
-	      strcpy(fname,filename.c_str());
-
+	      //strcpy(fname,filename.c_str());
+	      fname=filename;
 	      // cprintf(BLUE, "Header Info:\n"
 	      // 	      "size: %u\n"
 	      // 	      "multisize: %u\n"
@@ -572,6 +700,8 @@ int main(int argc, char *argv[]) {
 	      // 	      xCoord, yCoord,zCoord,
 	      // 	      flippedDataX, packetNumber, bunchId, timestamp, modId, debug, roundRNumber, detType, version);
 	      
+	      addJsonHeader=zHeader.addJsonHeader;
+
 	      /* Analog detector commands */
 	      //isPedestal=0;
 	      //isFlat=0;
@@ -579,13 +709,14 @@ int main(int argc, char *argv[]) {
 	      fMode=eFrame;
 	      frameMode_s="frame";
 	      cprintf(MAGENTA, "Frame mode: ");
-	      if (doc.HasMember("frameMode")) {
-		if (doc["frameMode"].IsString()) {
-		  frameMode_s=doc["frameMode"].GetString();
+	      //	      if (doc.HasMember("frameMode")) {
+	      if (addJsonHeader.find("frameMode")!= addJsonHeader.end()) { 
+		//	if (doc["frameMode"].IsString()) {
+		frameMode_s=addJsonHeader.at("frameMode");//doc["frameMode"].GetString();
 		  if (frameMode_s == "pedestal"){
 		    fMode=ePedestal;
 		    //isPedestal=1;
-		  } else if (frameMode_s == "newpedestal"){
+		  } else if (frameMode_s == "newPedestal"){
 		    mt->newDataSet(); //resets pedestal  
 		    // cprintf(MAGENTA, "Resetting pedestal\n");
 		    fMode=ePedestal;
@@ -594,8 +725,8 @@ int main(int argc, char *argv[]) {
 		    mt->newDataSet(); //resets pedestal  
 		    // cprintf(MAGENTA, "Resetting pedestal\n");
 		    fMode=ePedestal;
-		    rms=1;
 		    //isPedestal=1;
+		    rms=1;
 		  }
 #ifdef INTERP 
 		  else if (frameMode_s == "flatfield") {
@@ -607,7 +738,7 @@ int main(int argc, char *argv[]) {
 		     cprintf(MAGENTA, "Resetting flatfield\n");
 		     fMode=eFlat;
 		   }
-#endif
+		  //#endif
 		  else {
 		    fMode=eFrame;
 		    //isPedestal=0;
@@ -615,21 +746,23 @@ int main(int argc, char *argv[]) {
 		    fMode=eFrame;
 		    frameMode_s="frame";
 		  }
+		  //}
 	      }
 	      cprintf(MAGENTA, "%s\n" , frameMode_s.c_str());
-	      } else
-		cprintf(RED, "%s\n" , frameMode_s.c_str());
-
 	      mt->setFrameMode(fMode);
 
-	      threshold=0;
+	      // threshold=0;
 	      cprintf(MAGENTA, "Threshold: "); 
-	      if (doc.HasMember("threshold")) {	
-		if (doc["threshold"].IsInt()) {
-		  threshold=doc["threshold"].GetInt();
+	      if (addJsonHeader.find("threshold")!= addJsonHeader.end()) {
+		istringstream(addJsonHeader.at("threshold")) >>threshold;
+		//		threshold=atoi(addJsonHeader.at("threshold").c_str());//doc["frameMode"].GetString();
+	      }
+	      //if (doc.HasMember("threshold")) {	
+	      //if (doc["threshold"].IsInt()) {
+	      //  threshold=doc["threshold"].GetInt();
 	      mt->setThreshold(threshold);
-		}
-	      }	
+	      //	}
+	      // }	
 	      cprintf(MAGENTA, "%d\n", threshold);
 
 	      xmin=0;
@@ -637,40 +770,47 @@ int main(int argc, char *argv[]) {
 	      ymin=0;
 	      ymax=npy;
 	      cprintf(MAGENTA, "ROI: ");
-	      if (doc.HasMember("roi")) {
-		if (doc["roi"].IsArray()) {
-		  if (doc["roi"].Size() > 0 )
-		    if (doc["roi"][0].IsInt())
-		      xmin=doc["roi"][0].GetInt();
 	      
-		  if (doc["roi"].Size() > 1 )
-		    if (doc["roi"][1].IsInt())
-		      xmax=doc["roi"][1].GetInt();
+	      if (addJsonHeader.find("roi")!= addJsonHeader.end()) {
+		istringstream(addJsonHeader.at("roi")) >> xmin >> xmax >> ymin >> ymax ;
+		//  if (doc.HasMember("roi")) {
+		//if (doc["roi"].IsArray()) {
+		// if (doc["roi"].Size() > 0 )
+		//  if (doc["roi"][0].IsInt())
+		   //    xmin=doc["roi"][0].GetInt();
 		  
-		  if (doc["roi"].Size() > 2 )
-		    if (doc["roi"][2].IsInt())
-		      ymin=doc["roi"][2].GetInt();
+		//   if (doc["roi"].Size() > 1 )
+		//     if (doc["roi"][1].IsInt())
+		//       xmax=doc["roi"][1].GetInt();
 
-		  if (doc["roi"].Size() > 3 )
-		    if (doc["roi"][3].IsInt())
-		      ymax=doc["roi"][3].GetInt();
-		}
+		//   if (doc["roi"].Size() > 2 )
+		//     if (doc["roi"][2].IsInt())
+		//       ymin=doc["roi"][2].GetInt();
+		  
+		//   if (doc["roi"].Size() > 3 )
+		//     if (doc["roi"][3].IsInt())
+		//       ymax=doc["roi"][3].GetInt();
+		// }
 	      }
 
 	      cprintf(MAGENTA, "%d %d %d %d\n", xmin, xmax, ymin, ymax);
 	      mt->setROI(xmin, xmax, ymin, ymax);	
-	
-	      if (doc.HasMember("dynamicRange")) {
-		dr=doc["dynamicRange"].GetUint();
+	      if (addJsonHeader.find("dynamicRange")!= addJsonHeader.end()) {
+		istringstream(addJsonHeader.at("dynamicRange")) >> dr ;
 		dr=32;
 	      }
+	      // if (doc.HasMember("dynamicRange")) {
+	      // 	dr=doc["dynamicRange"].GetUint();
+	      // 	dr=32;
+	      // }
 
 	      dMode=eAnalog;
 	      detectorMode_s="analog";
 	      cprintf(MAGENTA, "Detector mode: ");	  
-	      if (doc.HasMember("detectorMode")) {
-		if (doc["detectorMode"].IsString()) {
-		    detectorMode_s=doc["detectorMode"].GetString();
+		if (addJsonHeader.find("detectorMode")!= addJsonHeader.end()) {;
+		  //if (doc.HasMember("detectorMode")) {
+		  //if (doc["detectorMode"].IsString()) {
+		  detectorMode_s=addJsonHeader.at("detectorMode");//=doc["detectorMode"].GetString();
 #ifdef INTERP
 		    if (detectorMode_s == "interpolating"){
 		      dMode=eInterpolating;
@@ -688,13 +828,12 @@ int main(int argc, char *argv[]) {
 		      mt->setInterpolation(NULL);
 #endif
 		    }
+		    // }
+		  
 	      }
 
-		cprintf(MAGENTA, "%s\n" , detectorMode_s.c_str());
-	      } else
-		cprintf(RED, "%s\n" , frameMode_s.c_str());
-
 	      mt->setDetectorMode(dMode);
+	      cprintf(MAGENTA, "%s\n" , detectorMode_s.c_str());
 
 	      // cout << "done " << endl;
 
@@ -737,6 +876,21 @@ int main(int argc, char *argv[]) {
 	      // 	mt->setNSubPixels(nSubPixels);
 	      // }
 	      
+	      // threshold=0;
+	      // cprintf(MAGENTA, "Subframes: ");
+	      // subframes=0;
+	      // //isubframe=0;
+	      // insubframe=0;
+	      // subnorm=1;
+	      // f0=0;
+	      // nnsubframe=0;
+	      // if (doc.HasMember("subframes")) {	
+	      // 	if (doc["subframes"].IsInt()) {
+	      // 	  subframes=doc["subframes"].GetInt();
+	      // 	}
+	      // }	
+	      // cprintf(MAGENTA, "%ld\n", subframes);
+
 	      
 	      newFrame=0;
 	      /* zmqsocket->CloseHeaderMessage();*/
@@ -745,7 +899,7 @@ int main(int argc, char *argv[]) {
 
 	    // cout << "file" << endl;
 	    //  cout << "data " << endl;
-	  if (of==NULL && dMode!=eAnalog && fMode!=ePedestal && threshold<=0) {
+	  if (of==NULL) {
 #ifdef WRITE_QUAD
 	    sprintf(ofname,"%s_%ld.clust2",filename.c_str(),fileindex);
 #endif
@@ -762,31 +916,98 @@ int main(int argc, char *argv[]) {
 	  }
 
 	  
+
 	  // cout << "data" << endl;
 	  // get data
 	  // acqIndex = doc["acqIndex"].GetUint64();
-	  frameIndex       = doc["fIndex"].GetUint64();
+
+	  frameIndex       = zHeader.frameIndex;////doc["fIndex"].GetUint64();
+
 	  // subFrameIndex    = doc["expLength"].GetUint();
 
 	  //  bunchId=doc["bunchId"].GetUint();
 	  //  timestamp=doc["timestamp"].GetUint();
-	      packetNumber=doc["packetNumber"].GetUint();
+	  packetNumber=zHeader.packetNumber; //doc["packetNumber"].GetUint();
 	  // cout << acqIndex << " " << frameIndex << " " << subFrameIndex << " "<< bunchId << " " << timestamp << " " << packetNumber << endl;
+	  //cprintf(GREEN, "frame\n");
 	  if (packetNumber>=40) {
 	    //*((int*)buff)=frameIndex;
+	    if (insubframe==0) f0=frameIndex;
 	    memcpy(buff,&frameIndex,sizeof(int));
 	    //length = 
 	    zmqsocket->ReceiveData(0, buff+sizeof(int), size);
 	    mt->pushData(buff);
 	    mt->nextThread();
 	    mt->popFree(buff);
-		cprintf(GREEN, "Frame\n");
+	    insubframe++;
+	    nsubframes=frameIndex+1-f0;
 	  } else {
 	    cprintf(RED, "Incomplete frame: received only %d packet\n", packetNumber);
 	    //length = 
 	    zmqsocket->ReceiveData(0, dummybuff, size);
+	  }
+	  
+
+
+
+	  if (subframes>0 && insubframe>=subframes && fMode==eFrame) {
+	    while (mt->isBusy()) {;}//wait until all data are processed from the queues
+	    detimage=mt->getImage(nnx,nny,nnsx, nnsy);
+	    cprintf(MAGENTA,"Get image!\n");
+	    dout= new int32_t[nnx*nny];
+	    doutf= new float[nnx*nny];
+	    if (subframes>0 && insubframe!=subframes && insubframe>0)
+	      subnorm=((double)subframes)/((double)insubframe);
+	    else
+	      subnorm=1.;
+	    for (int ix=0; ix<nnx*nny; ix++) {
+	      dout[ix]=detimage[ix]*subnorm;
+	      if (dout[ix]<0) dout[ix]=0;
+	      doutf[ix]=dout[ix];
+	    }
+	    sprintf(ofname,"%s_sf%ld_%ld.tiff",fname.c_str(),nnsubframe,fileindex);
+	    
+	    cout << "Writing image to " << ofname << endl;
+
+	    WriteToTiff(doutf,ofname ,nnx, nny); 
+	    nsubframes++;
+	    insubframe=0;
+	    nnsubframe++;
+
+
+	    
+	    //   zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 1,1,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,&additionalJsonHeader);
+	    zHeader.data = true;
+	    zmqsocket2->SendHeader(0,zHeader);
+	    zmqsocket2->SendData((char*)dout,nnx*nny*dr/8);
+	    cprintf(GREEN, "Sent subdata\n");
+		
+
+	    if (dout)
+	      delete [] dout;
+	    dout=NULL;
+
+	    if (doutf)
+	      delete [] doutf;
+	    doutf=NULL;
+	    
+	    mt->clearImage();
 	    
 	  }
+
+		 
+
+
+
+
+
+
+	
+	      
+
+
+	  
+	  
 	  iframe++;
 
 	}	// exiting infinite loop

slsDetectorCalibration/multiThreadedAnalogDetector.h

@@ -95,7 +95,7 @@ public:
   virtual int *getImage() {
     return det->getImage();
   }
-  virtual int getImageSize(int &nnx, int &nny, int &ns) {return det->getImageSize(nnx, nny, ns);};
+  virtual int getImageSize(int &nnx, int &nny, int &ns, int &nsy) {return det->getImageSize(nnx, nny, ns, nsy);};
   virtual int getDetectorSize(int &nnx, int &nny) {return det->getDetectorSize(nnx, nny);};
 
   virtual ~threadedAnalogDetector() {StopThread();  delete fifoFree; delete fifoData;}
@@ -123,7 +123,7 @@ public:
      return fifoFree->pop(ptr);
    }
 
-   virtual int isBusy() {return busy;}
+   virtual int isBusy() {if (fifoData->isEmpty() && busy==0) return 0; else return 1;}
    
    //protected:
    /** Implement this method in your subclass with the code you want your thread to run. */
@@ -221,10 +221,10 @@ FILE *getFilePointer(){return det->getFilePointer();};
    }
 
 
-   virtual int setNSubPixels(int ns)  { 
+  virtual int setNSubPixels(int ns, int nsy)  { 
      slsInterpolation *interp=(det)->getInterpolation();
-     if (interp)  return interp->setNSubPixels(ns);
-     else return 1;};
+     if (interp)  interp->setNSubPixels(ns, nsy);
+     return 1;};
 
 
    virtual slsInterpolation *setInterpolation(slsInterpolation *f){
@@ -249,7 +249,7 @@ protected:
    }
 
    void * processData() {
-     busy=1;
+     //  busy=1;
      while (!stop) {
        if (fifoData->isEmpty()) {
 	 busy=0;
@@ -259,6 +259,7 @@ protected:
 	 fifoData->pop(data); //blocking!
 	 det->processData(data);
 	 fifoFree->push(data); 
+	 //busy=0;
        }
      }
      return NULL;
@@ -313,13 +314,13 @@ public:
    
   virtual void newDataSet(){for (int i=0; i<nThreads; i++) dets[i]->newDataSet();};
   
-  virtual int *getImage(int &nnx, int &nny, int &ns) {
+  virtual int *getImage(int &nnx, int &nny, int &ns, int &nsy) {
     int *img;
     // int nnx, nny, ns; 
     // int nnx, nny, ns;
-    int nn=dets[0]->getImageSize(nnx, nny,ns);
+    int nn=dets[0]->getImageSize(nnx, nny,ns, nsy);
     if (image) {
-      delete image;
+      delete [] image;
       image=NULL;
     }
     image=new int[nn];
@@ -362,10 +363,10 @@ public:
 /*        dets[ii]->writeImage(tit); */
 /*      } */
 /* #endif */
-     int nnx, nny, ns;
-     getImage(nnx, nny, ns);
+    int nnx, nny, ns, nsy;
+    getImage(nnx, nny, ns,nsy);
      //int nnx, nny, ns;
-     int nn=dets[0]->getImageSize(nnx, nny, ns);
+    int nn=dets[0]->getImageSize(nnx, nny, ns, nsy);
      float *gm=new float[nn];
      if (gm) {
        for (int ix=0; ix<nn; ix++) {

slsDetectorCalibration/multiThreadedInterpolatingDetector.h

@@ -46,7 +46,7 @@ public:
   };
   
 
-   virtual int setNSubPixels(int ns)  { return (dets[0])->setNSubPixels(ns);};
+   /* virtual int setNSubPixels(int ns)  { return (dets[0])->setNSubPixels(ns);}; */
 
    virtual void resetFlatField() {(dets[0])->resetFlatField();};
    
@@ -69,13 +69,13 @@ public:
 
 
 
-  virtual int *getImage(int &nnx, int &nny, int &ns) {
-    if (getInterpolation()==NULL) return multiThreadedAnalogDetector::getImage(nnx,nny,ns);
+   virtual int *getImage(int &nnx, int &nny, int &nsx, int &nsy) {
+     if (getInterpolation()==NULL) return multiThreadedAnalogDetector::getImage(nnx,nny,nsx, nsy);
     //if one interpolates, the whole image is stored in detector 0;
     int *img;
     // int nnx, nny, ns; 
     // int nnx, nny, ns;
-    int nn=dets[0]->getImageSize(nnx, nny,ns);
+    int nn=dets[0]->getImageSize(nnx, nny,nsx, nsy);
     if (image) {
       delete image;
       image=NULL;

slsDetectorCalibration/pedestalSubtraction.h

@@ -10,7 +10,7 @@ class pedestalSubtraction  {
       \param nn number of samples to calculate the moving average (defaults to 1000)
   */
   pedestalSubtraction (int nn=1000) : stat(nn) {};
-    
+  /* void setPointers(double *me, double *va) {mean=me; var=va; stat.setPointers(mean, var);}; */
     /** virtual destructorr 
      */
     virtual ~pedestalSubtraction() {};

slsDetectorCalibration/singlePhotonDetector.h

@@ -51,14 +51,13 @@ public analogDetector<uint16_t> {
 
   */
 
-
  singlePhotonDetector(slsDetectorData<uint16_t> *d,
 		      int csize=3,
 		      double nsigma=5,
 		      int sign=1,
 		      commonModeSubtraction *cm=NULL,
 		      int nped=1000,
-		      int nd=100, int nnx=-1, int nny=-1, double *gm=NULL, ghostSummation<uint16_t> *gs=NULL) : analogDetector<uint16_t>(d, sign, cm, nped, nnx, nny, gm, gs),   nDark(nd), eventMask(NULL),nSigma (nsigma), eMin(-1), eMax(-1), clusterSize(csize), clusterSizeY(csize), clusters(NULL),   quad(UNDEFINED_QUADRANT), tot(0), quadTot(0)  {
+		      int nd=100, int nnx=-1, int nny=-1, double *gm=NULL, ghostSummation<uint16_t> *gs=NULL) : analogDetector<uint16_t>(d, sign, cm, nped, nnx, nny, gm, gs),   nDark(nd), eventMask(NULL),nSigma (nsigma), eMin(-1), eMax(-1), clusterSize(csize), clusterSizeY(csize), c2(1),c3(1), clusters(NULL),   quad(UNDEFINED_QUADRANT), tot(0), quadTot(0)  {
     
     
     
@@ -66,13 +65,18 @@ public analogDetector<uint16_t> {
     fm=new pthread_mutex_t ;
 
     eventMask=new eventType*[ny];
+    //  val=new double*[ny];
     for (int i=0; i<ny; i++) {
       eventMask[i]=new eventType[nx];
+      // val[i]=new double[nx];
     }
     
     if (ny==1)
       clusterSizeY=1;
 
+  
+    c2=sqrt((clusterSizeY+1)/2* (clusterSize+1)/2);
+    c3=sqrt(clusterSizeY*clusterSize);
     // cluster=new single_photon_hit(clusterSize,clusterSizeY);
     clusters=new single_photon_hit[nx*ny];
    
@@ -100,8 +104,10 @@ public analogDetector<uint16_t> {
     myFile=orig->myFile;
     
     eventMask=new eventType*[ny];
+    // val=new double*[ny];
     for (int i=0; i<ny; i++) {
       eventMask[i]=new eventType[nx];
+      // val[i]=new double[nx];
     }
     eMin=orig->eMin;
     eMax=orig->eMax;
@@ -111,6 +117,10 @@ public analogDetector<uint16_t> {
     clusterSize=orig->clusterSize;
     clusterSizeY=orig->clusterSizeY;
     // cluster=new single_photon_hit(clusterSize,clusterSizeY);
+
+    c2=sqrt((clusterSizeY+1)/2* (clusterSize+1)/2);
+    c3=sqrt(clusterSizeY*clusterSize);
+
     clusters=new single_photon_hit[nx*ny];
 
     // cluster=clusters;
@@ -124,6 +134,8 @@ public analogDetector<uint16_t> {
     gmap=orig->gmap;
     nphTot=0;
     nphFrame=0;
+    nphTot=0;
+    nphFrame=0;
     
   }
   
@@ -196,7 +208,6 @@ public analogDetector<uint16_t> {
       int nn=0;
       double max=0, tl=0, tr=0, bl=0,br=0, v;
       double rms=0;
-      
       int cm=0;
       if (cmSub) cm=1;
 
@@ -218,8 +229,8 @@ public analogDetector<uint16_t> {
 	    cout << "add to common mode?"<< endl;
 	    addToCommonMode(data);
 	  }
-	    for (int iy=ymin; iy<ymax; iy++) {
-	  for (int ix=xmin; ix<xmax; ix++) {
+	    for (iy=ymin; iy<ymax; ++iy) {
+	  for (ix=xmin; ix<xmax; ++ix) {
 	      if (det->isGood(ix,iy)) {
 		val=subtractPedestal(data,ix,iy, cm);
 		
@@ -236,8 +247,8 @@ public analogDetector<uint16_t> {
 	    }
 	  }
 	  
-	  for (int iy=ymin; iy<ymax; iy++) {
-	for (int ix=xmin; ix<xmax; ix++) {
+	  for (iy=ymin; iy<ymax; ++iy) {
+	for (ix=xmin; ix<xmax; ++ix) {
 	    
 	    if (det->isGood(ix,iy)) {
 	      eventMask[iy][ix]=PEDESTAL;
@@ -346,15 +357,20 @@ int *getClusters(char *data,  int *ph=NULL) {
 
  
   int nph=0;
-  double val[ny][nx];
-  int cy=(clusterSizeY+1)/2;
-  int cs=(clusterSize+1)/2;
-  //int ir, ic;
+  // const int cy=(clusterSizeY+1)/2;
+  //const int cs=(clusterSize+1)/2;
 
+  //int ir, ic;
+  eventType ee;
   double max=0, tl=0, tr=0, bl=0,br=0, *v;
   int cm=0;
   int good=1;
-  if (cmSub) cm=1;
+  int ir, ic;
+  // double quadTot;
+  //quadrant quad;
+  double rms;
+  //if (cmSub) cm=1;
+      double val[ny][nx];
   if (ph==NULL)
     ph=image;
   
@@ -366,13 +382,15 @@ int *getClusters(char *data,  int *ph=NULL) {
 
 
   
-  if (cm)
+  if (cmSub) {
     addToCommonMode(data);
+    cm=1;
+  }
 
+  for (iy=ymin; iy<ymax; ++iy) {
+    for (ix=xmin; ix<xmax; ++ix) {
+      if (det->isGood(ix,iy)==0) continue; 
 
-    for (int iy=ymin; iy<ymax; iy++) {
-  for (int ix=xmin; ix<xmax; ix++) {
-      if (det->isGood(ix,iy)) {
 	max=0;
 	tl=0;
 	tr=0;
@@ -384,20 +402,19 @@ int *getClusters(char *data,  int *ph=NULL) {
 	
       
 	
-	eventMask[iy][ix]=PEDESTAL;
+	//eventMask[iy][ix]
+	  ee=PEDESTAL;
 	
 	
-	(clusters+nph)->rms=getPedestalRMS(ix,iy);
+	  rms=getPedestalRMS(ix,iy);
 	// cluster=clusters+nph;
 	
-      
-	for (int ir=-(clusterSizeY/2); ir<(clusterSizeY/2)+1; ir++) {
-	  for (int ic=-(clusterSize/2); ic<(clusterSize/2)+1; ic++) {
+	  // cout << ix << " " << iy << endl;
+	for (ir=-(clusterSizeY/2); ir<(clusterSizeY/2)+1; ir++) {
+	  for (ic=-(clusterSize/2); ic<(clusterSize/2)+1; ic++) {
 	    
 	    if ((iy+ir)>=iy && (iy+ir)<ny && (ix+ic)>=ix && (ix+ic)<nx) {
 	      val[iy+ir][ix+ic]=subtractPedestal(data,ix+ic,iy+ir, cm);
-	    }
-	    
 	      v=&(val[iy+ir][ix+ic]);
 	      tot+=*v;
 	      if (ir<=0 && ic<=0)
@@ -412,44 +429,68 @@ int *getClusters(char *data,  int *ph=NULL) {
 		max=*v;
 	      }
 	   
-	    
-	    if (ir==0 && ic==0) {
-	      if (*v<-nSigma*(clusters+nph)->rms)
-		eventMask[iy][ix]=NEGATIVE_PEDESTAL;
-	      else if (*v>nSigma*(clusters+nph)->rms)
-		eventMask[iy][ix]=PHOTON;
 	    }
 	    
+	    
 	  }
 	}
-	if (eventMask[iy][ix]==PHOTON && val[iy][ix]<max) 
+	/* if (ix==50 && iy==50) */
+	/*   cout << id << " " << ix << " " << iy << " " << det->getValue(data,ix,iy)<< " "  << val[iy][ix] << " " << getPedestal(ix,iy) << " " << rms << endl;  */
+	if (val[iy][ix]<-nSigma*rms){
+	  ee=NEGATIVE_PEDESTAL;
 	  continue;    
-	
-	if (bl>=br && bl>=tl && bl>=tr) {
-	  (clusters+nph)->quad=BOTTOM_LEFT;
-	  (clusters+nph)->quadTot=bl;
-	} else if (br>=bl && br>=tl && br>=tr) {
-	  (clusters+nph)->quad=BOTTOM_RIGHT;
-	(clusters+nph)->quadTot=br;
-	} else if (tl>=br && tl>=bl && tl>=tr) {
-	  (clusters+nph)->quad=TOP_LEFT;
-	  (clusters+nph)->quadTot=tl;
-	} else if   (tr>=bl && tr>=tl && tr>=br) {
-	  (clusters+nph)->quad=TOP_RIGHT;
-	  (clusters+nph)->quadTot=tr;
+	} 
+	if (max>nSigma*rms){
+	  //	  cout << "ph1 " << max << " " << nSigma*rms << endl;
+	  ee=PHOTON;
+	  if (val[iy][ix]<max)
+	    continue;
+	}
+	else if (tot>c3*nSigma*rms) {
+	  //	  cout << "ph3 " << tot << " " << c3*nSigma*rms << endl;
+	  ee=PHOTON;
+	}
+#ifndef WRITE_QUAD
+	else {
+#endif
+	    quad=BOTTOM_RIGHT;
+	    quadTot=br;
+	    if (bl>=quadTot) {
+	      quad=BOTTOM_LEFT;
+	      quadTot=bl;
+	    }
+	    if (tl>=quadTot) {
+	      quad=TOP_LEFT;
+	      quadTot=tl;
+	    }
+	    if (tr>=quadTot) {
+	      quad=TOP_RIGHT;
+	      quadTot=tr;
 	    }
 	    
-	if (max>nSigma*(clusters+nph)->rms || tot>sqrt(clusterSizeY*clusterSize)*nSigma*(clusters+nph)->rms || ((clusters+nph)->quadTot)>sqrt(cy*cs)*nSigma*(clusters+nph)->rms) {
-	  if (val[iy][ix]>=max) {
-	  eventMask[iy][ix]=PHOTON_MAX;
+	    if (quadTot>c2*nSigma*rms) {
+	      //   cout << "ph2 " << quadTot << " " << c2*nSigma*rms << endl;
+	      ee=PHOTON;
+	    }
+	  
+#ifndef WRITE_QUAD
+	}
+#endif
+	if (ee==PHOTON && val[iy][ix]==max) {
+	  ee=PHOTON_MAX;
+	  // cout << "**" <<id<< " " << iframe << " "  << nDark << " "   << ix << " " << iy << " " << rms << " " << max << " " << quadTot << " " << tot << endl;
       	  (clusters+nph)->tot=tot;
       	  (clusters+nph)->x=ix;
       	  (clusters+nph)->y=iy;
+      	  (clusters+nph)->quad=quad;
+      	  (clusters+nph)->quadTot=quadTot;
+      	  //(clusters+nph)->rms=rms;
       	  //	  (clusters+nph)->iframe=det->getFrameNumber(data);
       	  // cout << det->getFrameNumber(data) << " " << (clusters+nph)->iframe << endl;
-	  (clusters+nph)->ped=getPedestal(ix,iy,0);
-	  for (int ir=-(clusterSizeY/2); ir<(clusterSizeY/2)+1; ir++) {
-	    for (int ic=-(clusterSize/2); ic<(clusterSize/2)+1; ic++) {
+      	  //  (clusters+nph)->ped=getPedestal(ix,iy,0);
+	  for (ir=-(clusterSizeY/2); ir<(clusterSizeY/2)+1; ir++) {
+	    for (ic=-(clusterSize/2); ic<(clusterSize/2)+1; ic++) {
+	      if ((iy+ir)>=0  && (iy+ir)<ny &&  (ix+ic)>=0 && (ix+ic)<nx) 
 		(clusters+nph)->set_data(val[iy+ir][ix+ic],ic,ir);
 	    }
       }
@@ -462,19 +503,19 @@ int *getClusters(char *data,  int *ph=NULL) {
       }
       
       
-	  } else {
-	    eventMask[iy][ix]=PHOTON;
-	  }
-	} else if (eventMask[iy][ix]==PEDESTAL) {
+	} else if (ee==PEDESTAL) {
 	  addToPedestal(data,ix,iy,cm);
+	} /*else {
+	    eventMask[iy][ix]=PHOTON;
+	    }*/
+	//eventMask[iy][ix]=ee;
   }
 }
-    }
-  }
+  
   nphFrame=nph;
   nphTot+=nph;
   //cout << nphFrame << endl;
-  //  cout <<"**********************************"<< det->getFrameNumber(data) << " " << nphFrame << endl;
+  //cout <<id << " **********************************"<< iframe << " " << det->getFrameNumber(data) << " " << nphFrame << endl;
   writeClusters(det->getFrameNumber(data));
   return  image;
   
@@ -561,13 +602,20 @@ int *getClusters(char *data,  int *ph=NULL) {
 */
 
     static void writeClusters(FILE *f, single_photon_hit *cl, int nph, int fn=0){
-  
-/* #ifndef OLDFORMAT   */
-/*       if (fwrite((void*)&fn, 1,  sizeof(int), f))  */
-/* 	if (fwrite((void*)&nph, 1,  sizeof(int), f))  */
-/* #endif    */
+      if (nph>0) {
+#ifndef OLDFORMAT   
+	if (fwrite((void*)&fn, 1,  sizeof(int), f))  
+	  if (fwrite((void*)&nph, 1,  sizeof(int), f))  
+#endif    
 	    for (int i=0; i<nph; i++) (cl+i)->write(f);
+      }
     };
+      
+
+
+
+
+
  void writeClusters(FILE *f, int fn=0){
    writeClusters(f,clusters,nphFrame, fn);
   //for (int i=0; i<nphFrame; i++) 
@@ -623,6 +671,7 @@ int *getClusters(char *data,  int *ph=NULL) {
     double eMin, eMax;
     int clusterSize; /**< cluster size in the x direction */
     int clusterSizeY; /**< cluster size in the y direction i.e. 1 for strips, clusterSize for pixels */
+    double c2, c3;
     //  single_photon_hit *cluster; /**< single photon hit data structure */
     single_photon_hit *clusters; /**< single photon hit data structure */
     quadrant quad; /**< quadrant where the photon is located */
@@ -631,6 +680,7 @@ int *getClusters(char *data,  int *ph=NULL) {
     int nphTot;
     int nphFrame;
 
+    //    double **val;
     pthread_mutex_t *fm;
 
     };

slsDetectorCalibration/single_photon_hit.h

@@ -36,16 +36,14 @@ class single_photon_hit {
       \param myFile file descriptor
   */
   size_t write(FILE *myFile) {
-    //fwrite((void*)this, 1, 3*sizeof(int)+4*sizeof(double)+sizeof(quad), myFile); 
-    
-    // if (fwrite((void*)this, 1, sizeof(int)+2*sizeof(int16_t), myFile))
-    //#ifdef OLDFORMAT 
+    //fwrite((void*)this, 1, 3*sizeof(int)+4*sizeof(double)+sizeof(quad), myFile);  // if (fwrite((void*)this, 1, sizeof(int)+2*sizeof(int16_t), myFile))
+#ifdef OLDFORMAT 
     if (fwrite((void*)&iframe, 1,  sizeof(int), myFile)) {};
-      //#endif  
+#endif  
 #ifndef WRITE_QUAD
       //printf("no quad ");
-    if (fwrite((void*)&x, 2,  sizeof(int16_t), myFile)) 
-      return fwrite((void*)data, 1, dx*dy*sizeof(int), myFile);
+    if (fwrite((void*)&x, sizeof(int16_t), 2, myFile)) 
+      return fwrite((void*)data, sizeof(int), dx*dy, myFile);
 #endif 
 #ifdef WRITE_QUAD
     //  printf("quad ");
@@ -91,8 +89,8 @@ class single_photon_hit {
     default:
       ;
     }
-    if (fwrite((void*)&x, 2,  sizeof(int16_t), myFile)) 
-      return fwrite((void*)qq, 1, 4*sizeof(int), myFile);
+     if (fwrite((void*)&x,   sizeof(int16_t), 2, myFile)) 
+      return fwrite((void*)qq, sizeof(int), 4, myFile);
 #endif
     return 0;
   };   
@@ -104,19 +102,19 @@ class single_photon_hit {
   size_t read(FILE *myFile) {
     //fread((void*)this, 1,  3*sizeof(int)+4*sizeof(double)+sizeof(quad), myFile); 
     
-    //#ifdef OLDFORMAT 
+#ifdef OLDFORMAT 
     if (fread((void*)&iframe, 1,  sizeof(int), myFile))  {}
-      //#endif   
+#endif   
 #ifndef WRITE_QUAD
       // printf( "no quad \n");
-    if (fread((void*)&x, 2,  sizeof(int16_t), myFile))  
-      return fread((void*)data, 1, dx*dy*sizeof(int), myFile);
+    if (fread((void*)&x,  sizeof(int16_t),2, myFile))  
+      return fread((void*)data, sizeof(int), dx*dy,myFile);
 #endif 
 #ifdef WRITE_QUAD
     int qq[4];
-    // printf( "quad \n");
-    if (fread((void*)&x, 2,  sizeof(int16_t), myFile))  
-      if (fread((void*)qq, 1, 4*sizeof(int), myFile)) {
+    printf( "quad \n");
+    if (fread((void*)&x, sizeof(int16_t), 2,  myFile))  
+      if (fread((void*)qq, sizeof(int), 4, myFile)) {
 
 	quad=TOP_RIGHT;
 	/*	int mm=qq[0]; */
@@ -216,7 +214,6 @@ class single_photon_hit {
     for (int iy=0; iy<dy; iy++) {
       for (int ix=0; ix<dx; ix++) {
 	printf("%d \t",data[ix+iy*dx]);
-
       }
     printf("\n");
     }
@@ -246,8 +243,6 @@ class single_photon_hit {
   int *get_cluster() {return data;};
 
   int	iframe; 	        /**< frame number */
-  int16_t 	x; 			/**< x-coordinate of the center of hit */
-  int16_t	y; 			/**< x-coordinate of the center of hit */
   double	rms; 		/**< noise of central pixel l -- at some point it can be removed*/
   double 	ped; 		/**< pedestal of the central pixel -- at some point it can be removed*/
    double tot; /**< sum of the 3x3 cluster */
@@ -255,6 +250,8 @@ class single_photon_hit {
    double quadTot; /**< sum of the maximum 2x2cluster */ 
   int dx;	                /**< size of data cluster in x */
   int dy;                 /**< size of data cluster in y */ 
+  int16_t 	x; 			/**< x-coordinate of the center of hit */
+  int16_t	y; 			/**< x-coordinate of the center of hit */ 
   int *data;		        /**< pointer to data */
 };
 

slsDetectorGui/CMakeLists.txt

@@ -103,10 +103,10 @@ set_target_properties(slsDetectorGui PROPERTIES
 )
 
 install(TARGETS slsDetectorGui
-    EXPORT "${TARGETS_EXPORT_NAME}"
+    # EXPORT "${TARGETS_EXPORT_NAME}"
     RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}
-    LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}
-    ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}
-    PUBLIC_HEADER DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}
+    # LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}
+    # ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}
+    # PUBLIC_HEADER DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}
 )
 

slsDetectorGui/forms/form_cloneplot.ui

@@ -55,6 +55,149 @@
      </widget>
     </item>
     <item row="1" column="0">
+     <widget class="QLabel" name="lblCompleteImage">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>40</width>
+        <height>0</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>16777215</width>
+        <height>16777215</height>
+       </size>
+      </property>
+      <property name="palette">
+       <palette>
+        <active>
+         <colorrole role="WindowText">
+          <brush brushstyle="SolidPattern">
+           <color alpha="255">
+            <red>0</red>
+            <green>150</green>
+            <blue>110</blue>
+           </color>
+          </brush>
+         </colorrole>
+        </active>
+        <inactive>
+         <colorrole role="WindowText">
+          <brush brushstyle="SolidPattern">
+           <color alpha="255">
+            <red>0</red>
+            <green>150</green>
+            <blue>110</blue>
+           </color>
+          </brush>
+         </colorrole>
+        </inactive>
+        <disabled>
+         <colorrole role="WindowText">
+          <brush brushstyle="SolidPattern">
+           <color alpha="255">
+            <red>139</red>
+            <green>142</green>
+            <blue>142</blue>
+           </color>
+          </brush>
+         </colorrole>
+        </disabled>
+       </palette>
+      </property>
+      <property name="text">
+       <string>Complete Image</string>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignCenter</set>
+      </property>
+     </widget>
+    </item>
+    <item row="1" column="1">
+     <widget class="QLabel" name="lblInCompleteImage">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>40</width>
+        <height>0</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>16777215</width>
+        <height>16777215</height>
+       </size>
+      </property>
+      <property name="palette">
+       <palette>
+        <active>
+         <colorrole role="WindowText">
+          <brush brushstyle="SolidPattern">
+           <color alpha="255">
+            <red>255</red>
+            <green>0</green>
+            <blue>0</blue>
+           </color>
+          </brush>
+         </colorrole>
+        </active>
+        <inactive>
+         <colorrole role="WindowText">
+          <brush brushstyle="SolidPattern">
+           <color alpha="255">
+            <red>255</red>
+            <green>0</green>
+            <blue>0</blue>
+           </color>
+          </brush>
+         </colorrole>
+        </inactive>
+        <disabled>
+         <colorrole role="WindowText">
+          <brush brushstyle="SolidPattern">
+           <color alpha="255">
+            <red>139</red>
+            <green>142</green>
+            <blue>142</blue>
+           </color>
+          </brush>
+         </colorrole>
+        </disabled>
+       </palette>
+      </property>
+      <property name="text">
+       <string>Missing Packets</string>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignCenter</set>
+      </property>
+     </widget>
+    </item>
+    <item row="1" column="2">
+     <spacer name="horizontalSpacer_3">
+      <property name="orientation">
+       <enum>Qt::Horizontal</enum>
+      </property>
+      <property name="sizeHint" stdset="0">
+       <size>
+        <width>117</width>
+        <height>20</height>
+       </size>
+      </property>
+     </spacer>
+    </item>
+    <item row="2" column="0" colspan="3">
      <widget class="QWidget" name="widgetStatistics" native="true">
       <property name="sizePolicy">
        <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
@@ -241,7 +384,7 @@
      <x>0</x>
      <y>0</y>
      <width>376</width>
-     <height>28</height>
+     <height>27</height>
     </rect>
    </property>
    <widget class="QMenu" name="menuSave">

slsDetectorGui/forms/form_plot.ui

@@ -19,47 +19,8 @@
   <property name="windowTitle">
    <string>Form</string>
   </property>
-  <layout class="QGridLayout" name="layout">
-   <property name="margin">
-    <number>6</number>
-   </property>
-   <property name="spacing">
-    <number>0</number>
-   </property>
-   <item row="0" column="0">
-    <widget class="QGroupBox" name="boxPlot">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="font">
-      <font>
-       <family>Sans Serif</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="title">
-      <string>Sample Plot</string>
-     </property>
-     <property name="alignment">
-      <set>Qt::AlignCenter</set>
-     </property>
-     <property name="flat">
-      <bool>false</bool>
-     </property>
-     <layout class="QGridLayout" name="plotLayout">
-      <property name="margin">
-       <number>9</number>
-      </property>
-      <property name="spacing">
-       <number>0</number>
-      </property>
-     </layout>
-    </widget>
-   </item>
-   <item row="1" column="0">
+  <layout class="QGridLayout" name="gridLayout">
+   <item row="2" column="0" colspan="4">
     <widget class="QWidget" name="widgetStatistics" native="true">
      <property name="sizePolicy">
       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
@@ -86,73 +47,6 @@
       <property name="spacing">
        <number>0</number>
       </property>
-      <item row="0" column="6">
-       <widget class="QLabel" name="lblSum">
-        <property name="sizePolicy">
-         <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-          <horstretch>0</horstretch>
-          <verstretch>0</verstretch>
-         </sizepolicy>
-        </property>
-        <property name="minimumSize">
-         <size>
-          <width>40</width>
-          <height>0</height>
-         </size>
-        </property>
-        <property name="maximumSize">
-         <size>
-          <width>40</width>
-          <height>16777215</height>
-         </size>
-        </property>
-        <property name="text">
-         <string>Sum: </string>
-        </property>
-        <property name="alignment">
-         <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
-        </property>
-       </widget>
-      </item>
-      <item row="0" column="2">
-       <spacer name="horizontalSpacer">
-        <property name="orientation">
-         <enum>Qt::Horizontal</enum>
-        </property>
-        <property name="sizeHint" stdset="0">
-         <size>
-          <width>40</width>
-          <height>20</height>
-         </size>
-        </property>
-       </spacer>
-      </item>
-      <item row="0" column="1">
-       <widget class="QLabel" name="lblMinDisp">
-        <property name="sizePolicy">
-         <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-          <horstretch>0</horstretch>
-          <verstretch>0</verstretch>
-         </sizepolicy>
-        </property>
-        <property name="text">
-         <string>-</string>
-        </property>
-       </widget>
-      </item>
-      <item row="0" column="4">
-       <widget class="QLabel" name="lblMaxDisp">
-        <property name="sizePolicy">
-         <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-          <horstretch>0</horstretch>
-          <verstretch>0</verstretch>
-         </sizepolicy>
-        </property>
-        <property name="text">
-         <string>-</string>
-        </property>
-       </widget>
-      </item>
       <item row="0" column="3">
        <widget class="QLabel" name="lblMax">
         <property name="sizePolicy">
@@ -181,8 +75,8 @@
         </property>
        </widget>
       </item>
-      <item row="0" column="7">
-       <widget class="QLabel" name="lblSumDisp">
+      <item row="0" column="1">
+       <widget class="QLabel" name="lblMinDisp">
         <property name="sizePolicy">
          <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
           <horstretch>0</horstretch>
@@ -194,6 +88,19 @@
         </property>
        </widget>
       </item>
+      <item row="0" column="2">
+       <spacer name="horizontalSpacer">
+        <property name="orientation">
+         <enum>Qt::Horizontal</enum>
+        </property>
+        <property name="sizeHint" stdset="0">
+         <size>
+          <width>40</width>
+          <height>20</height>
+         </size>
+        </property>
+       </spacer>
+      </item>
       <item row="0" column="0">
        <widget class="QLabel" name="lblMin">
         <property name="sizePolicy">
@@ -222,6 +129,32 @@
         </property>
        </widget>
       </item>
+      <item row="0" column="4">
+       <widget class="QLabel" name="lblMaxDisp">
+        <property name="sizePolicy">
+         <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+          <horstretch>0</horstretch>
+          <verstretch>0</verstretch>
+         </sizepolicy>
+        </property>
+        <property name="text">
+         <string>-</string>
+        </property>
+       </widget>
+      </item>
+      <item row="0" column="7">
+       <widget class="QLabel" name="lblSumDisp">
+        <property name="sizePolicy">
+         <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+          <horstretch>0</horstretch>
+          <verstretch>0</verstretch>
+         </sizepolicy>
+        </property>
+        <property name="text">
+         <string>-</string>
+        </property>
+       </widget>
+      </item>
       <item row="0" column="5">
        <spacer name="horizontalSpacer_2">
         <property name="orientation">
@@ -235,9 +168,213 @@
         </property>
        </spacer>
       </item>
+      <item row="0" column="6">
+       <widget class="QLabel" name="lblSum">
+        <property name="sizePolicy">
+         <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+          <horstretch>0</horstretch>
+          <verstretch>0</verstretch>
+         </sizepolicy>
+        </property>
+        <property name="minimumSize">
+         <size>
+          <width>40</width>
+          <height>0</height>
+         </size>
+        </property>
+        <property name="maximumSize">
+         <size>
+          <width>40</width>
+          <height>16777215</height>
+         </size>
+        </property>
+        <property name="text">
+         <string>Sum: </string>
+        </property>
+        <property name="alignment">
+         <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+        </property>
+       </widget>
+      </item>
      </layout>
     </widget>
    </item>
+   <item row="1" column="3">
+    <spacer name="horizontalSpacer_3">
+     <property name="orientation">
+      <enum>Qt::Horizontal</enum>
+     </property>
+     <property name="sizeHint" stdset="0">
+      <size>
+       <width>419</width>
+       <height>20</height>
+      </size>
+     </property>
+    </spacer>
+   </item>
+   <item row="0" column="0" colspan="4">
+    <widget class="QGroupBox" name="boxPlot">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="font">
+      <font>
+       <family>Sans Serif</family>
+       <pointsize>10</pointsize>
+      </font>
+     </property>
+     <property name="title">
+      <string>Sample Plot</string>
+     </property>
+     <property name="alignment">
+      <set>Qt::AlignCenter</set>
+     </property>
+     <property name="flat">
+      <bool>true</bool>
+     </property>
+     <layout class="QGridLayout" name="plotLayout">
+      <property name="margin">
+       <number>9</number>
+      </property>
+      <property name="spacing">
+       <number>0</number>
+      </property>
+     </layout>
+    </widget>
+   </item>
+   <item row="1" column="2">
+    <widget class="QLabel" name="lblInCompleteImage">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>40</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>16777215</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="palette">
+      <palette>
+       <active>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>255</red>
+           <green>0</green>
+           <blue>0</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </active>
+       <inactive>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>255</red>
+           <green>0</green>
+           <blue>0</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </inactive>
+       <disabled>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>139</red>
+           <green>142</green>
+           <blue>142</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </disabled>
+      </palette>
+     </property>
+     <property name="text">
+      <string>Missing Packets</string>
+     </property>
+     <property name="alignment">
+      <set>Qt::AlignCenter</set>
+     </property>
+    </widget>
+   </item>
+   <item row="1" column="1">
+    <widget class="QLabel" name="lblCompleteImage">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>40</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>16777215</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="palette">
+      <palette>
+       <active>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>0</red>
+           <green>150</green>
+           <blue>110</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </active>
+       <inactive>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>0</red>
+           <green>150</green>
+           <blue>110</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </inactive>
+       <disabled>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>139</red>
+           <green>142</green>
+           <blue>142</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </disabled>
+      </palette>
+     </property>
+     <property name="text">
+      <string>Complete Image</string>
+     </property>
+     <property name="alignment">
+      <set>Qt::AlignCenter</set>
+     </property>
+    </widget>
+   </item>
   </layout>
  </widget>
  <resources/>

slsDetectorGui/include/qCloneWidget.h

@@ -14,7 +14,8 @@ class qCloneWidget : public QMainWindow, private Ui::ClonePlotObject {
     qCloneWidget(QWidget *parent, SlsQt1DPlot *p1, SlsQt2DPlot *p2,
                  SlsQt1DPlot *gp1, SlsQt2DPlot *gp, QString title,
                  QString filePath, QString fileName, int64_t aIndex,
-                 bool displayStats, QString min, QString max, QString sum);
+                 bool displayStats, QString min, QString max, QString sum,
+                 bool completeImage);
 
     ~qCloneWidget();
 

slsDetectorGui/include/qDacWidget.h

@@ -1,7 +1,7 @@
 #pragma once
-#include "ui_form_dac.h"
 #include "Detector.h"
 #include "sls_detector_defs.h"
+#include "ui_form_dac.h"
 #include <string>
 
 class qDacWidget : public QWidget, private Ui::WidgetDacObject {

slsDetectorGui/include/qDefs.h

@@ -6,9 +6,9 @@
 #include <QMessageBox>
 
 #include <chrono>
+#include <cstdint>
 #include <iostream>
 #include <ostream>
-#include <cstdint>
 #include <string>
 
 using std::chrono::duration;

slsDetectorGui/include/qDetectorMain.h

@@ -1,7 +1,7 @@
 #pragma once
-#include "ui_form_detectormain.h"
-#include "qDefs.h"
 #include "Detector.h"
+#include "qDefs.h"
+#include "ui_form_detectormain.h"
 #include <QTabWidget>
 
 class qDrawPlot;

slsDetectorGui/include/qDrawPlot.h

@@ -1,7 +1,7 @@
 #pragma once
-#include "ui_form_plot.h"
-#include "qDefs.h"
 #include "Detector.h"
+#include "qDefs.h"
+#include "ui_form_plot.h"
 #include <mutex>
 
 class SlsQt1DPlot;
@@ -59,11 +59,9 @@ class qDrawPlot : public QWidget, private Ui::PlotObject {
 
   private slots:
     void SetSaveFileName(QString val);
-    void AcquireThread();
     void UpdatePlot();
 
   signals:
-    void StartAcquireSignal();
     void AcquireFinishedSignal();
     void AbortSignal();
     void UpdateSignal();
@@ -74,6 +72,7 @@ class qDrawPlot : public QWidget, private Ui::PlotObject {
     void SetupPlots();
     void GetStatistics(double &min, double &max, double &sum);
     void DetachHists();
+    void AcquireThread();
     static void GetAcquisitionFinishedCallBack(double currentProgress,
                                                int detectorStatus,
                                                void *this_pointer);
@@ -114,6 +113,7 @@ class qDrawPlot : public QWidget, private Ui::PlotObject {
     QString zTitle2d{"Intensity"};
     QString plotTitle{""};
     QString indexTitle{""};
+    bool completeImage{false};
     bool xyRangeChanged{false};
     double xyRange[4]{0, 0, 0, 0};
     bool isXYRange[4]{false, false, false, false};

slsDetectorGui/include/qTabAdvanced.h

@@ -1,6 +1,6 @@
 #pragma once
-#include "ui_form_tab_advanced.h"
 #include "Detector.h"
+#include "ui_form_tab_advanced.h"
 
 class qDrawPlot;
 

slsDetectorGui/include/qTabDataOutput.h

@@ -1,6 +1,6 @@
 #pragma once
-#include "ui_form_tab_dataoutput.h"
 #include "Detector.h"
+#include "ui_form_tab_dataoutput.h"
 
 class qTabDataOutput : public QWidget, private Ui::TabDataOutputObject {
     Q_OBJECT

slsDetectorGui/include/qTabDebugging.h

@@ -1,6 +1,6 @@
 #pragma once
-#include "ui_form_tab_debugging.h"
 #include "Detector.h"
+#include "ui_form_tab_debugging.h"
 
 class QTreeWidget;
 class QTreeWidgetItem;

slsDetectorGui/include/qTabDeveloper.h

@@ -1,7 +1,7 @@
 #pragma once
-#include "ui_form_tab_developer.h"
 #include "Detector.h"
 #include "sls_detector_defs.h"
+#include "ui_form_tab_developer.h"
 #include <vector>
 
 class qDacWidget;

slsDetectorGui/include/qTabMeasurement.h

@@ -1,6 +1,6 @@
 #pragma once
-#include "ui_form_tab_measurement.h"
 #include "Detector.h"
+#include "ui_form_tab_measurement.h"
 
 class qDrawPlot;
 class QStandardItemModel;

slsDetectorGui/include/qTabPlot.h

@@ -1,6 +1,6 @@
 #pragma once
-#include "ui_form_tab_plot.h"
 #include "Detector.h"
+#include "ui_form_tab_plot.h"
 
 class qDrawPlot;
 class QButtonGroup;

slsDetectorGui/include/qTabSettings.h

@@ -1,6 +1,6 @@
 #pragma once
-#include "ui_form_tab_settings.h"
 #include "Detector.h"
+#include "ui_form_tab_settings.h"
 
 class qTabSettings : public QWidget, private Ui::TabSettingsObject {
     Q_OBJECT

slsDetectorGui/slsDetectorPlotting/include/SlsQt1DPlot.h

@@ -1,8 +1,8 @@
 #ifndef SLSQT1DPLOT_H
 #define SLSQT1DPLOT_H
 
-#include "ansi.h"
 #include "SlsQt1DZoomer.h"
+#include "ansi.h"
 #include <qwt_plot.h>
 #include <qwt_plot_curve.h>
 #include <qwt_plot_marker.h>

slsDetectorGui/slsDetectorPlotting/include/SlsQt2DZoomer.h

@@ -1,9 +1,9 @@
 #ifndef SLSQT2DZOOMER_H
 #define SLSQT2DZOOMER_H
 #include "SlsQt2DHist.h"
+#include <cstdio>
 #include <qwt_plot_panner.h>
 #include <qwt_plot_zoomer.h>
-#include <cstdio>
 
 class SlsQt2DZoomer : public QwtPlotZoomer {
   private:

slsDetectorGui/slsDetectorPlotting/src/SlsQt1DPlot.cpp

@@ -1,7 +1,7 @@
 
 /* TODO! short description */
 #include "SlsQt1DPlot.h"
-#include <qwt_symbol.h>
+#include <iostream>
 #include <qwt_legend.h>
 #include <qwt_math.h>
 #include <qwt_painter.h>
@@ -10,8 +10,8 @@
 #include <qwt_scale_draw.h>
 #include <qwt_scale_engine.h>
 #include <qwt_scale_widget.h>
+#include <qwt_symbol.h>
 #include <stdlib.h>
-#include <iostream>
 
 #define QwtLog10ScaleEngine QwtLogScaleEngine // hmm
 
@@ -314,7 +314,8 @@ void SlsQtH1DList::Remove(SlsQtH1D *hist) {
             hl = hl->the_next;
         else { // match
             if (!hl->the_next)
-                hl->the_hist = nullptr; // first the_hist is zero when there's no next
+                hl->the_hist =
+                    nullptr; // first the_hist is zero when there's no next
             else {
                 SlsQtH1DList *t = hl->the_next;
                 hl->the_hist = t->the_hist;

slsDetectorGui/slsDetectorPlotting/src/SlsQt1DZoomer.cpp

@@ -1,9 +1,9 @@
 /* TODO! short description */
 #include "SlsQt1DZoomer.h"
 #include "SlsQt1DPlot.h"
+#include <iostream>
 #include <qwt_plot.h>
 #include <qwt_scale_div.h>
-#include <iostream>
 
 void SlsQt1DZoomer::ResetZoomBase() {
     SetZoomBase(x0, y0, x1 - x0,

slsDetectorGui/slsDetectorPlotting/src/SlsQt2DPlot.cpp

@@ -1,5 +1,5 @@
 #include "SlsQt2DPlot.h"
-#include "ansi.h"
+// #include "ansi.h"
 
 #include <qlist.h>
 #include <qprinter.h>
@@ -224,7 +224,6 @@ QwtLinearColorMap *SlsQt2DPlot::myColourMap(int log) {
     return myColourMap(cs);
 }
 
-
 void SlsQt2DPlot::Update() {
     if (isLog)
         hist->SetMinimumToFirstGreaterThanZero();

slsDetectorGui/src/qCloneWidget.cpp

@@ -15,13 +15,20 @@ qCloneWidget::qCloneWidget(QWidget *parent, SlsQt1DPlot *p1, SlsQt2DPlot *p2,
                            SlsQt1DPlot *gp1, SlsQt2DPlot *gp, QString title,
                            QString fPath, QString fName, int64_t aIndex,
                            bool displayStats, QString min, QString max,
-                           QString sum)
+                           QString sum, bool completeImage)
     : QMainWindow(parent), plot1d(p1), plot2d(p2), gainplot1d(gp1),
       gainplot2d(gp), filePath(fPath), fileName(fName), acqIndex(aIndex) {
     setupUi(this);
     id = qCloneWidget::NumClones++;
     SetupWidgetWindow(title);
     DisplayStats(displayStats, min, max, sum);
+    lblCompleteImage->hide();
+    lblInCompleteImage->hide();
+    if (completeImage) {
+        lblCompleteImage->show();
+    } else {
+        lblInCompleteImage->show();
+    }
 }
 
 qCloneWidget::~qCloneWidget() {

slsDetectorGui/src/qDacWidget.cpp

@@ -1,7 +1,6 @@
 #include "qDacWidget.h"
 #include "qDefs.h"
 
-
 qDacWidget::qDacWidget(QWidget *parent, sls::Detector *detector, bool d,
                        std::string n, slsDetectorDefs::dacIndex i)
     : QWidget(parent), det(detector), isDac(d), index(i) {
@@ -56,8 +55,8 @@ void qDacWidget::GetDac() {
 
 void qDacWidget::SetDac() {
     int val = (int)spinDac->value();
-    LOG(logINFO) << "Setting dac:" << lblDac->text().toAscii().data()
-                      << " : " << val;
+    LOG(logINFO) << "Setting dac:" << lblDac->text().toAscii().data() << " : "
+                 << val;
 
     try {
         det->setDAC(index, val, 0, {detectorIndex});

slsDetectorGui/src/qDetectorMain.cpp

@@ -19,8 +19,8 @@
 #include <QScrollArea>
 #include <QSizePolicy>
 
-#include <string>
 #include <getopt.h>
+#include <string>
 #include <sys/stat.h>
 
 int main(int argc, char **argv) {
@@ -57,8 +57,7 @@ int main(int argc, char **argv) {
 
         case 'f':
             fname = optarg;
-            LOG(logDEBUG)
-                << long_options[option_index].name << " " << optarg;
+            LOG(logDEBUG) << long_options[option_index].name << " " << optarg;
             break;
 
         case 'd':
@@ -105,9 +104,10 @@ int main(int argc, char **argv) {
     return 0;
 }
 
-qDetectorMain::qDetectorMain(int multiId, const std::string& fname, bool isDevel)
-    : QMainWindow(nullptr), detType(slsDetectorDefs::GENERIC), isDeveloper(isDevel),
-      heightPlotWindow(0), heightCentralWidget(0) {
+qDetectorMain::qDetectorMain(int multiId, const std::string &fname,
+                             bool isDevel)
+    : QMainWindow(nullptr), detType(slsDetectorDefs::GENERIC),
+      isDeveloper(isDevel), heightPlotWindow(0), heightCentralWidget(0) {
 
     setupUi(this);
     SetUpDetector(fname, multiId);
@@ -115,8 +115,7 @@ qDetectorMain::qDetectorMain(int multiId, const std::string& fname, bool isDevel
 }
 
 qDetectorMain::~qDetectorMain() {
-    disconnect(tabs, SIGNAL(currentChanged(int)), this,
-            SLOT(Refresh(int)));
+    disconnect(tabs, SIGNAL(currentChanged(int)), this, SLOT(Refresh(int)));
 }
 
 void qDetectorMain::SetUpWidgetWindow() {
@@ -132,8 +131,7 @@ void qDetectorMain::SetUpWidgetWindow() {
     layoutTabs->addWidget(tabs);
 
     // creating all the other tab widgets
-    tabMeasurement =
-        new qTabMeasurement(this, det.get(), plot);
+    tabMeasurement = new qTabMeasurement(this, det.get(), plot);
     tabDataOutput = new qTabDataOutput(this, det.get());
     tabPlot = new qTabPlot(this, det.get(), plot);
     tabSettings = new qTabSettings(this, det.get());
@@ -260,8 +258,8 @@ void qDetectorMain::Initialization() {
     //	Measurement tab
     connect(tabMeasurement, SIGNAL(EnableTabsSignal(bool)), this,
             SLOT(EnableTabs(bool)));
-    connect(tabMeasurement, SIGNAL(FileNameChangedSignal(QString)),
-            plot, SLOT(SetSaveFileName(QString)));
+    connect(tabMeasurement, SIGNAL(FileNameChangedSignal(QString)), plot,
+            SLOT(SetSaveFileName(QString)));
     // Plot tab
     connect(tabPlot, SIGNAL(DisableZoomSignal(bool)), this,
             SLOT(SetZoomToolTip(bool)));
@@ -269,8 +267,7 @@ void qDetectorMain::Initialization() {
     // Plotting
     connect(plot, SIGNAL(AcquireFinishedSignal()), tabMeasurement,
             SLOT(AcquireFinished()));
-    connect(plot, SIGNAL(AbortSignal()), tabMeasurement,
-            SLOT(AbortAcquire()));
+    connect(plot, SIGNAL(AbortSignal()), tabMeasurement, SLOT(AbortAcquire()));
 
     // menubar
     // Modes Menu
@@ -372,8 +369,7 @@ void qDetectorMain::ExecuteUtilities(QAction *action) {
                                "The Configuration Parameters have been "
                                "configured successfully.",
                                "qDetectorMain::ExecuteUtilities");
-                LOG(logINFO)
-                    << "Configuration Parameters loaded successfully";
+                LOG(logINFO) << "Configuration Parameters loaded successfully";
             }
         }
 

slsDetectorGui/src/qDrawPlot.cpp

@@ -87,7 +87,6 @@ void qDrawPlot::SetupWidgetWindow() {
 
 void qDrawPlot::Initialization() {
     connect(this, SIGNAL(UpdateSignal()), this, SLOT(UpdatePlot()));
-    connect(this, SIGNAL(StartAcquireSignal()), this, SLOT(AcquireThread()));
 }
 
 void qDrawPlot::SetupPlots() {
@@ -97,27 +96,13 @@ void qDrawPlot::SetupPlots() {
     slsDetectorDefs::xy res = det->getDetectorSize();
     nPixelsX = res.x;
     nPixelsY = res.y;
-    switch (detType) {
-    case slsDetectorDefs::EIGER:
-        try {
-            if (det->getQuad().tsquash("Inconsistent values for quad type")) {
-                nPixelsX /= 2;
-                nPixelsY *= 2;
-                if (nPixelsX != nPixelsY) {
-                    --nPixelsX;
-                }
-            }
-        }
-        CATCH_DISPLAY("Could not get quad.", "qDrawPlot::SetupPlots")
-        break;
-    default:
-        break;
-    }
     LOG(logINFO) << "nPixelsX:" << nPixelsX;
     LOG(logINFO) << "nPixelsY:" << nPixelsY;
 
     boxPlot->setFont(QFont("Sans Serif", qDefs::Q_FONT_SIZE, QFont::Normal));
     widgetStatistics->hide();
+    lblCompleteImage->hide();
+    lblInCompleteImage->hide();
 
     // setup 1d data
 
@@ -292,8 +277,7 @@ void qDrawPlot::SetPlotTitlePrefix(QString title) {
 }
 
 void qDrawPlot::SetXAxisTitle(QString title) {
-    LOG(logINFO) << "Setting X Axis Title to "
-                      << title.toAscii().constData();
+    LOG(logINFO) << "Setting X Axis Title to " << title.toAscii().constData();
     if (is1d) {
         xTitle1d = title;
     } else {
@@ -302,8 +286,7 @@ void qDrawPlot::SetXAxisTitle(QString title) {
 }
 
 void qDrawPlot::SetYAxisTitle(QString title) {
-    LOG(logINFO) << "Setting Y Axis Title to "
-                      << title.toAscii().constData();
+    LOG(logINFO) << "Setting Y Axis Title to " << title.toAscii().constData();
     if (is1d) {
         yTitle1d = title;
     } else {
@@ -312,8 +295,7 @@ void qDrawPlot::SetYAxisTitle(QString title) {
 }
 
 void qDrawPlot::SetZAxisTitle(QString title) {
-    LOG(logINFO) << "Setting Z Axis Title to "
-                      << title.toAscii().constData();
+    LOG(logINFO) << "Setting Z Axis Title to " << title.toAscii().constData();
     zTitle2d = title;
 }
 
@@ -324,8 +306,8 @@ void qDrawPlot::SetXYRangeChanged(bool disable, double *xy, bool *isXY) {
     std::copy(xy, xy + 4, xyRange);
     std::copy(isXY, isXY + 4, isXYRange);
 
-    LOG(logDEBUG) << "Setting Disable zoom to " << std::boolalpha
-                       << disable << std::noboolalpha;
+    LOG(logDEBUG) << "Setting Disable zoom to " << std::boolalpha << disable
+                  << std::noboolalpha;
     disableZoom = disable;
 }
 
@@ -363,18 +345,22 @@ double qDrawPlot::GetYMaximum() {
 }
 
 void qDrawPlot::SetDataCallBack(bool enable) {
-    LOG(logINFO) << "Setting data call back to " << std::boolalpha
-                      << enable << std::noboolalpha;
+    LOG(logINFO) << "Setting data call back to " << std::boolalpha << enable
+                 << std::noboolalpha;
+    try {
         if (enable) {
             isPlot = true;
-        det->setRxZmqDataStream(true);
             det->registerDataCallback(&(GetDataCallBack), this);
+            det->setRxZmqDataStream(true);
         } else {
             isPlot = false;
-        det->setRxZmqDataStream(false);
             det->registerDataCallback(nullptr, this);
+            det->setRxZmqDataStream(false);
         }
     }
+    CATCH_DISPLAY("Could not get set rxr data streaming enable.",
+                  "qDrawPlot::SetDataCallBack")
+}
 
 void qDrawPlot::SetBinary(bool enable, int from, int to) {
     LOG(logINFO) << (enable ? "Enabling" : "Disabling")
@@ -582,8 +568,8 @@ void qDrawPlot::ClonePlot() {
     new qCloneWidget(this, cloneplot1D, cloneplot2D, clonegainplot1D,
                      clonegainplot2D, boxPlot->title(), fileSavePath,
                      fileSaveName, currentAcqIndex, displayStatistics,
-                     lblMinDisp->text(), lblMaxDisp->text(),
-                     lblSumDisp->text());
+                     lblMinDisp->text(), lblMaxDisp->text(), lblSumDisp->text(),
+                     completeImage);
 }
 
 void qDrawPlot::SavePlot() {
@@ -668,7 +654,8 @@ void qDrawPlot::StartAcquisition() {
         xyRangeChanged = true;
     }
 
-    emit StartAcquireSignal();
+    QtConcurrent::run(this, &qDrawPlot::AcquireThread);
+
     LOG(logDEBUG) << "End of Starting Acquisition in qDrawPlot";
 }
 
@@ -684,8 +671,7 @@ void qDrawPlot::AcquireThread() {
     // exception in acquire will not call acquisition finished call back, so
     // handle it
     if (!mess.empty()) {
-        LOG(logERROR) << "Acquisition Finished with an exception: "
-                           << mess;
+        LOG(logERROR) << "Acquisition Finished with an exception: " << mess;
         qDefs::ExceptionMessage("Acquire unsuccessful.", mess,
                                 "qDrawPlot::AcquireFinished");
         try {
@@ -750,16 +736,16 @@ void qDrawPlot::GetData(detectorData *data, uint64_t frameIndex,
                   << "  \t nx: " << data->nx << std::endl
                   << "  \t ny: " << data->ny << std::endl
                   << "  \t data bytes: " << data->databytes << std::endl
-                       << "  \t dynamic range: " << data->dynamicRange
-                       << std::endl
+                  << "  \t dynamic range: " << data->dynamicRange << std::endl
                   << "  \t file index: " << data->fileIndex << std::endl
+                  << "  \t complete image: " << data->completeImage << std::endl
                   << "  ]";
 
     progress = (int)data->progressIndex;
     currentAcqIndex = data->fileIndex;
     currentFrame = frameIndex;
-    LOG(logDEBUG) << "[ Progress:" << progress
-                       << ", Frame:" << currentFrame << " ]";
+    LOG(logDEBUG) << "[ Progress:" << progress << ", Frame:" << currentFrame
+                  << " ]";
 
     // 2d (only image, not gain data, not pedestalvals),
     // check if npixelsX and npixelsY is the same (quad is different)
@@ -767,12 +753,17 @@ void qDrawPlot::GetData(detectorData *data, uint64_t frameIndex,
                   static_cast<int>(nPixelsY) != data->ny)) {
         nPixelsX = data->nx;
         nPixelsY = data->ny;
-        LOG(logINFO) << "Change in Detector Shape:\n\tnPixelsX:"
-                          << nPixelsX << " nPixelsY:" << nPixelsY;
+        LOG(logINFO) << "Change in Detector Shape:\n\tnPixelsX:" << nPixelsX
+                     << " nPixelsY:" << nPixelsY;
 
         delete[] data2d;
         data2d = new double[nPixelsY * nPixelsX];
         std::fill(data2d, data2d + nPixelsX * nPixelsY, 0);
+        if (gainData) {
+            delete[] gainData;
+            gainData = new double[nPixelsY * nPixelsX];
+            std::fill(gainData, gainData + nPixelsX * nPixelsY, 0);
+        }
     }
 
     // convert data to double
@@ -795,6 +786,7 @@ void qDrawPlot::GetData(detectorData *data, uint64_t frameIndex,
     if ((int)subFrameIndex != -1) {
         indexTitle = QString("%1 %2").arg(frameIndex, subFrameIndex);
     }
+    completeImage = data->completeImage;
 
     // reset pedestal
     if (resetPedestal) {
@@ -819,8 +811,8 @@ void qDrawPlot::GetData(detectorData *data, uint64_t frameIndex,
         }
         // calculate the pedestal value
         if (pedestalCount == NUM_PEDESTAL_FRAMES) {
-            LOG(logINFO) << "Pedestal Calculated after "
-                              << NUM_PEDESTAL_FRAMES << " frames";
+            LOG(logINFO) << "Pedestal Calculated after " << NUM_PEDESTAL_FRAMES
+                         << " frames";
             for (unsigned int px = 0; px < nPixels; ++px)
                 tempPedestalVals[px] =
                     tempPedestalVals[px] / (double)NUM_PEDESTAL_FRAMES;
@@ -1115,6 +1107,16 @@ void qDrawPlot::UpdatePlot() {
     LOG(logDEBUG) << "Update Plot";
 
     boxPlot->setTitle(plotTitle);
+
+    // notify of incomplete images
+    lblCompleteImage->hide();
+    lblInCompleteImage->hide();
+    if (completeImage) {
+        lblCompleteImage->show();
+    } else {
+        lblInCompleteImage->show();
+    }
+
     if (is1d) {
         Update1dPlot();
     } else {

slsDetectorGui/src/qTabAdvanced.cpp

@@ -531,8 +531,7 @@ void qTabAdvanced::SetROI() {
     roi.xmax = spinXmax->value();
 
     // set roi
-    LOG(logINFO) << "Setting ROI: [" << roi.xmin << ", " << roi.xmax
-                      << "]";
+    LOG(logINFO) << "Setting ROI: [" << roi.xmin << ", " << roi.xmax << "]";
     try {
         det->setROI(roi, {comboReadout->currentIndex()});
     }
@@ -586,8 +585,7 @@ void qTabAdvanced::GetNumStoragecells() {
 }
 
 void qTabAdvanced::SetNumStoragecells(int value) {
-    LOG(logINFO) << "Setting number of additional stoarge cells: "
-                      << value;
+    LOG(logINFO) << "Setting number of additional stoarge cells: " << value;
     try {
         det->setNumberOfAdditionalStorageCells(value);
     }
@@ -621,8 +619,8 @@ void qTabAdvanced::SetSubExposureTime() {
     auto timeNS = qDefs::getNSTime(std::make_pair(
         spinSubExpTime->value(),
         static_cast<qDefs::timeUnit>(comboSubExpTimeUnit->currentIndex())));
-    LOG(logINFO)
-        << "Setting sub frame acquisition time to " << timeNS.count() << " ns"
+    LOG(logINFO) << "Setting sub frame acquisition time to " << timeNS.count()
+                 << " ns"
                  << "/" << spinSubExpTime->value()
                  << qDefs::getUnitString(
                         (qDefs::timeUnit)comboSubExpTimeUnit->currentIndex());
@@ -661,8 +659,7 @@ void qTabAdvanced::SetSubDeadTime() {
         spinSubDeadTime->value(),
         static_cast<qDefs::timeUnit>(comboSubDeadTimeUnit->currentIndex())));
 
-    LOG(logINFO)
-        << "Setting sub frame dead time to " << timeNS.count() << " ns"
+    LOG(logINFO) << "Setting sub frame dead time to " << timeNS.count() << " ns"
                  << "/" << spinSubDeadTime->value()
                  << qDefs::getUnitString(
                         (qDefs::timeUnit)comboSubDeadTimeUnit->currentIndex());

slsDetectorGui/src/qTabDataOutput.cpp

@@ -334,15 +334,13 @@ void qTabDataOutput::SetRateCorrection() {
         // custom dead time
         if (radioCustomDeadtime->isChecked()) {
             int64_t deadtime = spinCustomDeadTime->value();
-            LOG(logINFO)
-                << "Setting Rate Correction with custom dead time: "
+            LOG(logINFO) << "Setting Rate Correction with custom dead time: "
                          << deadtime;
             det->setRateCorrection(sls::ns(deadtime));
         }
         // default dead time
         else {
-            LOG(logINFO)
-                << "Setting Rate Correction with default dead time";
+            LOG(logINFO) << "Setting Rate Correction with default dead time";
             det->setDefaultRateCorrection();
         }
     }
@@ -398,8 +396,7 @@ void qTabDataOutput::SetFlags() {
     auto mode =
         comboEigerParallelFlag->currentIndex() == PARALLEL ? true : false;
     try {
-        LOG(logINFO)
-            << "Setting Readout Flags to "
+        LOG(logINFO) << "Setting Readout Flags to "
                      << comboEigerParallelFlag->currentText().toAscii().data();
         det->setParallelMode(mode);
     }

slsDetectorGui/src/qTabDebugging.cpp

@@ -1,6 +1,6 @@
 #include "qTabDebugging.h"
-#include "qDefs.h"
 #include "ToString.h"
+#include "qDefs.h"
 #include <QDesktopWidget>
 #include <QGridLayout>
 #include <QTreeWidget>
@@ -105,8 +105,9 @@ void qTabDebugging::GetInfo() {
         treeDet->setHeaderLabel("Eiger Detector");
         // get num modules
         for (int i = 0; i < comboDetector->count() / 2; ++i)
-            items.append(new QTreeWidgetItem(
-                (QTreeWidget *)nullptr, QStringList(QString("Module %1").arg(i))));
+            items.append(
+                new QTreeWidgetItem((QTreeWidget *)nullptr,
+                                    QStringList(QString("Module %1").arg(i))));
         treeDet->insertTopLevelItems(0, items);
         // gets det names
         for (int i = 0; i < comboDetector->count(); ++i) {

slsDetectorGui/src/qTabMeasurement.cpp

@@ -771,8 +771,7 @@ void qTabMeasurement::AcquireFinished() {
         if (startingFnumImplemented) {
             GetStartingFrameNumber();
         }
-        LOG(logDEBUG) << "Measurement " << currentMeasurement
-                           << " finished";
+        LOG(logDEBUG) << "Measurement " << currentMeasurement << " finished";
         // next measurement if acq is not stopped
         if (!isAcquisitionStopped &&
             ((currentMeasurement + 1) < numMeasurements)) {
@@ -801,8 +800,9 @@ void qTabMeasurement::Enable(bool enable) {
     frameNotTimeResolved->setEnabled(enable);
 
     // shortcut each time, else it doesnt work a second time
-    btnStart->setShortcut(QApplication::translate(
-        "TabMeasurementObject", "Shift+Space", nullptr, QApplication::UnicodeUTF8));
+    btnStart->setShortcut(QApplication::translate("TabMeasurementObject",
+                                                  "Shift+Space", nullptr,
+                                                  QApplication::UnicodeUTF8));
 }
 
 void qTabMeasurement::Refresh() {

slsDetectorGui/src/qTabPlot.cpp

@@ -6,7 +6,6 @@
 #include <QStackedLayout>
 #include <QStandardItemModel>
 
-
 QString qTabPlot::defaultPlotTitle("");
 QString qTabPlot::defaultHistXAxisTitle("Channel Number");
 QString qTabPlot::defaultHistYAxisTitle("Counts");
@@ -64,6 +63,7 @@ void qTabPlot::SetupWidgetWindow() {
         chkGapPixels->setEnabled(true);
         break;
     case slsDetectorDefs::JUNGFRAU:
+        chkGapPixels->setEnabled(true);
         chkGainPlot->setEnabled(true);
         chkGainPlot->setChecked(true);
         plot->EnableGainPlot(true);
@@ -289,16 +289,14 @@ void qTabPlot::SetBinary() {
     bool binary1D = chkBinary->isChecked();
     bool binary2D = chkBinary_2->isChecked();
     if (is1d) {
-        LOG(logINFO) << "Binary Plot "
-                          << (binary1D ? "enabled" : "disabled");
+        LOG(logINFO) << "Binary Plot " << (binary1D ? "enabled" : "disabled");
         lblFrom->setEnabled(binary1D);
         lblTo->setEnabled(binary1D);
         spinFrom->setEnabled(binary1D);
         spinTo->setEnabled(binary1D);
         plot->SetBinary(binary1D, spinFrom->value(), spinTo->value());
     } else {
-        LOG(logINFO) << "Binary Plot "
-                          << (binary2D ? "enabled" : "disabled");
+        LOG(logINFO) << "Binary Plot " << (binary2D ? "enabled" : "disabled");
         lblFrom_2->setEnabled(binary2D);
         lblTo_2->setEnabled(binary2D);
         spinFrom_2->setEnabled(binary2D);
@@ -312,8 +310,7 @@ void qTabPlot::GetGapPixels() {
     disconnect(chkGapPixels, SIGNAL(toggled(bool)), this,
                SLOT(SetGapPixels(bool)));
     try {
-        auto retval = det->getRxAddGapPixels().tsquash(
-            "Inconsistent gap pixels enabled for all detectors.");
+        auto retval = det->getGapPixelsinCallback();
         chkGapPixels->setChecked(retval);
     }
     CATCH_DISPLAY("Could not get gap pixels enable.", "qTabPlot::GetGapPixels")
@@ -324,7 +321,7 @@ void qTabPlot::GetGapPixels() {
 void qTabPlot::SetGapPixels(bool enable) {
     LOG(logINFO) << "Setting Gap Pixels Enable to " << enable;
     try {
-        det->setRxAddGapPixels(enable);
+        det->setGapPixelsinCallback(enable);
     }
     CATCH_HANDLE("Could not set gap pixels enable.", "qTabPlot::SetGapPixels",
                  this, &qTabPlot::GetGapPixels)
@@ -434,9 +431,9 @@ void qTabPlot::SetXYRange() {
     for (int i = 0; i < 4; ++i) {
         if (chkVal[i] && !dispVal[i].isEmpty()) {
             double val = dispVal[i].toDouble();
-            LOG(logDEBUG)
-                << "Setting "
-                << qDefs::getRangeAsString(static_cast<qDefs::range>(i))
+            LOG(logDEBUG) << "Setting "
+                          << qDefs::getRangeAsString(
+                                 static_cast<qDefs::range>(i))
                           << " to " << val;
             xyRange[i] = val;
             isRange[i] = true;
@@ -482,10 +479,10 @@ void qTabPlot::MaintainAspectRatio(int dimension) {
     ranges[qDefs::YMAX] = plot->GetYMaximum();
     double idealAspectratio = (ranges[qDefs::XMAX] - ranges[qDefs::XMIN]) /
                               (ranges[qDefs::YMAX] - ranges[qDefs::YMIN]);
-    LOG(logDEBUG) << "Ideal Aspect ratio: " << idealAspectratio
-                       << " for x(" << ranges[qDefs::XMIN] << " - "
-                       << ranges[qDefs::XMAX] << "), y(" << ranges[qDefs::YMIN]
-                       << " - " << ranges[qDefs::YMAX] << ")";
+    LOG(logDEBUG) << "Ideal Aspect ratio: " << idealAspectratio << " for x("
+                  << ranges[qDefs::XMIN] << " - " << ranges[qDefs::XMAX]
+                  << "), y(" << ranges[qDefs::YMIN] << " - "
+                  << ranges[qDefs::YMAX] << ")";
 
     // calculate current aspect ratio
     ranges[qDefs::XMIN] = dispXMin->text().toDouble();
@@ -494,10 +491,10 @@ void qTabPlot::MaintainAspectRatio(int dimension) {
     ranges[qDefs::YMAX] = dispYMax->text().toDouble();
     double currentAspectRatio = (ranges[qDefs::XMAX] - ranges[qDefs::XMIN]) /
                                 (ranges[qDefs::YMAX] - ranges[qDefs::YMIN]);
-    LOG(logDEBUG) << "Current Aspect ratio: " << currentAspectRatio
-                       << " for x(" << ranges[qDefs::XMIN] << " - "
-                       << ranges[qDefs::XMAX] << "), y(" << ranges[qDefs::YMIN]
-                       << " - " << ranges[qDefs::YMAX] << ")";
+    LOG(logDEBUG) << "Current Aspect ratio: " << currentAspectRatio << " for x("
+                  << ranges[qDefs::XMIN] << " - " << ranges[qDefs::XMAX]
+                  << "), y(" << ranges[qDefs::YMIN] << " - "
+                  << ranges[qDefs::YMAX] << ")";
 
     if (currentAspectRatio != idealAspectratio) {
         // dimension: 1(x changed: y adjusted), 0(y changed: x adjusted),
@@ -672,6 +669,8 @@ void qTabPlot::Refresh() {
             break;
         case slsDetectorDefs::JUNGFRAU:
             chkGainPlot->setEnabled(true);
+            chkGapPixels->setEnabled(true);
+            GetGapPixels();
             break;
         case slsDetectorDefs::GOTTHARD2:
             chkGainPlot1D->setEnabled(true);

slsDetectorGui/src/qTabSettings.cpp

@@ -1,6 +1,6 @@
 #include "qTabSettings.h"
-#include "qDefs.h"
 #include "ToString.h"
+#include "qDefs.h"
 #include <QStandardItemModel>
 
 qTabSettings::qTabSettings(QWidget *parent, sls::Detector *detector)

slsDetectorServers/ctbDetectorServer/CMakeLists.txt

@@ -16,6 +16,7 @@ add_executable(ctbDetectorServer_virtual
     ../slsDetectorServer/src/LTC2620.c
     ../slsDetectorServer/src/MAX1932.c
     ../slsDetectorServer/src/programFpgaBlackfin.c
+    ../slsDetectorServer/src/communication_virtual.c
 )
 
 include_directories(
@@ -33,6 +34,7 @@ target_compile_definitions(ctbDetectorServer_virtual
 
 target_link_libraries(ctbDetectorServer_virtual
     PUBLIC pthread rt slsProjectCWarnings
+    m
 )
 
 set_target_properties(ctbDetectorServer_virtual PROPERTIES

slsDetectorServers/ctbDetectorServer/RegisterDefs.h

@@ -10,7 +10,8 @@
 #define FPGA_VERSION_BRD_RVSN_MSK   (0x00FFFFFF << FPGA_VERSION_BRD_RVSN_OFST)
 #define FPGA_VERSION_DTCTR_TYP_OFST (24)
 #define FPGA_VERSION_DTCTR_TYP_MSK  (0x000000FF << FPGA_VERSION_DTCTR_TYP_OFST)
-#define FPGA_VERSION_DTCTR_TYP_CTB_VAL      ((0x4 << FPGA_VERSION_DTCTR_TYP_OFST) & FPGA_VERSION_DTCTR_TYP_MSK)
+#define FPGA_VERSION_DTCTR_TYP_CTB_VAL                                         \
+    ((0x4 << FPGA_VERSION_DTCTR_TYP_OFST) & FPGA_VERSION_DTCTR_TYP_MSK)
 
 /* Fix pattern RO register */
 #define FIX_PATT_REG (0x01 << MEM_MAP_SHIFT)
@@ -57,7 +58,8 @@
 #define STATUS_PLL_PHS_DN_OFST        (23)
 #define STATUS_PLL_PHS_DN_MSK         (0x00000001 << STATUS_PLL_PHS_DN_OFST)
 #define STATUS_PT_CNTRL_STTS_OFF_OFST (24)
-#define STATUS_PT_CNTRL_STTS_OFF_MSK        (0x000000FF << STATUS_PT_CNTRL_STTS_OFF_OFST)
+#define STATUS_PT_CNTRL_STTS_OFF_MSK                                           \
+    (0x000000FF << STATUS_PT_CNTRL_STTS_OFF_OFST)
 #define STATUS_IDLE_MSK (0x677FF)
 
 /* Look at me RO register TODO */
@@ -67,24 +69,30 @@
 #define SYSTEM_STATUS_REG (0x04 << MEM_MAP_SHIFT)
 
 #define SYSTEM_STATUS_DDR3_CLBRTN_OK_OFST (0)
-#define SYSTEM_STATUS_DDR3_CLBRTN_OK_MSK 	(0x00000001 << SYSTEM_STATUS_DDR3_CLBRTN_OK_OFST)
+#define SYSTEM_STATUS_DDR3_CLBRTN_OK_MSK                                       \
+    (0x00000001 << SYSTEM_STATUS_DDR3_CLBRTN_OK_OFST)
 #define SYSTEM_STATUS_DDR3_CLBRTN_FL_OFST (1)
-#define SYSTEM_STATUS_DDR3_CLBRTN_FL_MSK 	(0x00000001 << SYSTEM_STATUS_DDR3_CLBRTN_FL_OFST)
+#define SYSTEM_STATUS_DDR3_CLBRTN_FL_MSK                                       \
+    (0x00000001 << SYSTEM_STATUS_DDR3_CLBRTN_FL_OFST)
 #define SYSTEM_STATUS_DDR3_INT_DN_OFST (2)
-#define SYSTEM_STATUS_DDR3_INT_DN_MSK 		(0x00000001 << SYSTEM_STATUS_DDR3_INT_DN_OFST)
+#define SYSTEM_STATUS_DDR3_INT_DN_MSK                                          \
+    (0x00000001 << SYSTEM_STATUS_DDR3_INT_DN_OFST)
 #define SYSTEM_STATUS_RCNFG_PLL_LCK_OFST (3)
-#define SYSTEM_STATUS_RCNFG_PLL_LCK_MSK 	(0x00000001 << SYSTEM_STATUS_RCNFG_PLL_LCK_OFST)
+#define SYSTEM_STATUS_RCNFG_PLL_LCK_MSK                                        \
+    (0x00000001 << SYSTEM_STATUS_RCNFG_PLL_LCK_OFST)
 #define SYSTEM_STATUS_PLL_A_LCK_OFST (4)
 #define SYSTEM_STATUS_PLL_A_LCK_MSK  (0x00000001 << SYSTEM_STATUS_PLL_A_LCK_OFST)
 
-/* PLL Param (Reconfiguratble PLL Parameter) RO register TODO FIXME: Same as PLL_PARAM_REG 0x50 */
+/* PLL Param (Reconfiguratble PLL Parameter) RO register TODO FIXME: Same as
+ * PLL_PARAM_REG 0x50 */
 //#define PLL_PARAM_REG                       (0x05 << MEM_MAP_SHIFT)
 
 /* FIFO Data RO register TODO */
 #define FIFO_DATA_REG (0x06 << MEM_MAP_SHIFT)
 
 #define FIFO_DATA_HRDWR_SRL_NMBR_OFST (0)
-#define FIFO_DATA_HRDWR_SRL_NMBR_MSK        (0x0000FFFF << FIFO_DATA_HRDWR_SRL_NMBR_OFST)
+#define FIFO_DATA_HRDWR_SRL_NMBR_MSK                                           \
+    (0x0000FFFF << FIFO_DATA_HRDWR_SRL_NMBR_OFST)
 //#define FIFO_DATA_WRD_OFST                  (16)
 //#define FIFO_DATA_WRD_MSK                   (0x0000FFFF << FIFO_DATA_WRD_OFST)
 
@@ -114,7 +122,8 @@
 #define API_VERSION_DTCTR_TYP_OFST (24)
 #define API_VERSION_DTCTR_TYP_MSK  (0x000000FF << API_VERSION_DTCTR_TYP_OFST)
 
-/* Time from Start 64 bit RO register. t = GCLK x 50 ns. Reset using CONTROL_CRST. TODO */
+/* Time from Start 64 bit RO register. t = GCLK x 50 ns. Reset using
+ * CONTROL_CRST. TODO */
 #define TIME_FROM_START_LSB_REG (0x10 << MEM_MAP_SHIFT)
 #define TIME_FROM_START_MSB_REG (0x11 << MEM_MAP_SHIFT)
 
@@ -135,12 +144,16 @@
 #define PERIOD_LEFT_MSB_REG (0x19 << MEM_MAP_SHIFT)
 
 /* Exposure Time Left 64 bit RO register */
-//#define EXPTIME_LEFT_LSB_REG                (0x1A << MEM_MAP_SHIFT)            // Not used in FW
-//#define EXPTIME_LEFT_MSB_REG                (0x1B << MEM_MAP_SHIFT)            // Not used in FW
+//#define EXPTIME_LEFT_LSB_REG                (0x1A << MEM_MAP_SHIFT) // Not
+// used in FW #define EXPTIME_LEFT_MSB_REG                (0x1B <<
+// MEM_MAP_SHIFT)
+//// Not used in FW
 
 /* Gates Left 64 bit RO register */
-//#define GATES_LEFT_LSB_REG                  (0x1C << MEM_MAP_SHIFT)            // Not used in FW
-//#define GATES_LEFT_MSB_REG                  (0x1D << MEM_MAP_SHIFT)            // Not used in FW
+//#define GATES_LEFT_LSB_REG                  (0x1C << MEM_MAP_SHIFT) // Not
+// used in FW #define GATES_LEFT_MSB_REG                  (0x1D <<
+// MEM_MAP_SHIFT)
+//// Not used in FW
 
 /* Data In 64 bit RO register TODO */
 #define DATA_IN_LSB_REG (0x1E << MEM_MAP_SHIFT)
@@ -151,14 +164,17 @@
 #define PATTERN_OUT_MSB_REG (0x21 << MEM_MAP_SHIFT)
 
 /* Frames From Start 64 bit RO register TODO */
-//#define FRAMES_FROM_START_LSB_REG           (0x22 << MEM_MAP_SHIFT)            // Not used in FW
-//#define FRAMES_FROM_START_MSB_REG           (0x23 << MEM_MAP_SHIFT)            // Not used in FW
+//#define FRAMES_FROM_START_LSB_REG           (0x22 << MEM_MAP_SHIFT) // Not
+// used in FW #define FRAMES_FROM_START_MSB_REG           (0x23 <<
+// MEM_MAP_SHIFT)
+//// Not used in FW
 
 /* Frames From Start PG 64 bit RO register. Reset using CONTROL_CRST. TODO */
 #define FRAMES_FROM_START_PG_LSB_REG (0x24 << MEM_MAP_SHIFT)
 #define FRAMES_FROM_START_PG_MSB_REG (0x25 << MEM_MAP_SHIFT)
 
-/* Start Frame Time (Measurement Time) 64 bit register (timestamp at a frame start until reset) TODO */
+/* Start Frame Time (Measurement Time) 64 bit register (timestamp at a frame
+ * start until reset) TODO */
 #define START_FRAME_TIME_LSB_REG (0x26 << MEM_MAP_SHIFT)
 #define START_FRAME_TIME_MSB_REG (0x27 << MEM_MAP_SHIFT)
 
@@ -177,9 +193,11 @@
 /* FIFO Digital In Status RO register */
 #define FIFO_DIN_STATUS_REG            (0x3B << MEM_MAP_SHIFT)
 #define FIFO_DIN_STATUS_FIFO_FULL_OFST (30)
-#define FIFO_DIN_STATUS_FIFO_FULL_MSK		(0x00000001 << FIFO_DIN_STATUS_FIFO_FULL_OFST)
+#define FIFO_DIN_STATUS_FIFO_FULL_MSK                                          \
+    (0x00000001 << FIFO_DIN_STATUS_FIFO_FULL_OFST)
 #define FIFO_DIN_STATUS_FIFO_EMPTY_OFST (31)
-#define FIFO_DIN_STATUS_FIFO_EMPTY_MSK		(0x00000001 << FIFO_DIN_STATUS_FIFO_EMPTY_OFST)
+#define FIFO_DIN_STATUS_FIFO_EMPTY_MSK                                         \
+    (0x00000001 << FIFO_DIN_STATUS_FIFO_EMPTY_OFST)
 
 /* FIFO Digital In 64 bit RO register */
 #define FIFO_DIN_LSB_REG (0x3C << MEM_MAP_SHIFT)
@@ -243,9 +261,11 @@
 #define DUMMY_FIFO_CHNNL_SLCT_OFST    (0)
 #define DUMMY_FIFO_CHNNL_SLCT_MSK     (0x0000003F << DUMMY_FIFO_CHNNL_SLCT_OFST)
 #define DUMMY_ANLG_FIFO_RD_STRBE_OFST (8)
-#define DUMMY_ANLG_FIFO_RD_STRBE_MSK        (0x00000001 << DUMMY_ANLG_FIFO_RD_STRBE_OFST)
+#define DUMMY_ANLG_FIFO_RD_STRBE_MSK                                           \
+    (0x00000001 << DUMMY_ANLG_FIFO_RD_STRBE_OFST)
 #define DUMMY_DGTL_FIFO_RD_STRBE_OFST (9)
-#define DUMMY_DGTL_FIFO_RD_STRBE_MSK        (0x00000001 << DUMMY_DGTL_FIFO_RD_STRBE_OFST)
+#define DUMMY_DGTL_FIFO_RD_STRBE_MSK                                           \
+    (0x00000001 << DUMMY_DGTL_FIFO_RD_STRBE_OFST)
 
 /* Receiver IP Address RW register */
 #define RX_IP_REG (0x45 << MEM_MAP_SHIFT)
@@ -313,21 +333,23 @@
 #define CONTROL_STP_ACQSTN_OFST  (1)
 #define CONTROL_STP_ACQSTN_MSK   (0x00000001 << CONTROL_STP_ACQSTN_OFST)
 //#define CONTROL_STRT_FF_TST_OFST            (2)
-//#define CONTROL_STRT_FF_TST_MSK             (0x00000001 << CONTROL_STRT_FF_TST_OFST)
-//#define CONTROL_STP_FF_TST_OFST             (3)
-//#define CONTROL_STP_FF_TST_MSK              (0x00000001 << CONTROL_STP_FF_TST_OFST)
-//#define CONTROL_STRT_RDT_OFST               (4)
-//#define CONTROL_STRT_RDT_MSK                (0x00000001 << CONTROL_STRT_RDT_OFST)
-//#define CONTROL_STP_RDT_OFST                (5)
-//#define CONTROL_STP_RDT_MSK                 (0x00000001 << CONTROL_STP_RDT_OFST)
+//#define CONTROL_STRT_FF_TST_MSK             (0x00000001 <<
+// CONTROL_STRT_FF_TST_OFST) #define CONTROL_STP_FF_TST_OFST             (3)
+//#define CONTROL_STP_FF_TST_MSK              (0x00000001 <<
+// CONTROL_STP_FF_TST_OFST) #define CONTROL_STRT_RDT_OFST               (4)
+//#define CONTROL_STRT_RDT_MSK                (0x00000001 <<
+// CONTROL_STRT_RDT_OFST) #define CONTROL_STP_RDT_OFST                (5)
+// #define CONTROL_STP_RDT_MSK                 (0x00000001 <<
+// CONTROL_STP_RDT_OFST)
 #define CONTROL_STRT_EXPSR_OFST (6)
 #define CONTROL_STRT_EXPSR_MSK  (0x00000001 << CONTROL_STRT_EXPSR_OFST)
 //#define CONTROL_STP_EXPSR_OFST              (7)
-//#define CONTROL_STP_EXPSR_MSK               (0x00000001 << CONTROL_STP_RDT_OFST)
-//#define CONTROL_STRT_TRN_OFST               (8)
-//#define CONTROL_STRT_TRN_MSK                (0x00000001 << CONTROL_STRT_RDT_OFST)
+//#define CONTROL_STP_EXPSR_MSK               (0x00000001 <<
+// CONTROL_STP_RDT_OFST) #define CONTROL_STRT_TRN_OFST               (8) #define
+// CONTROL_STRT_TRN_MSK                (0x00000001 << CONTROL_STRT_RDT_OFST)
 //#define CONTROL_STP_TRN_OFST                (9)
-//#define CONTROL_STP_TRN_MSK                 (0x00000001 << CONTROL_STP_RDT_OFST)
+//#define CONTROL_STP_TRN_MSK                 (0x00000001 <<
+// CONTROL_STP_RDT_OFST)
 #define CONTROL_CRE_RST_OFST    (10)
 #define CONTROL_CRE_RST_MSK     (0x00000001 << CONTROL_CRE_RST_OFST)
 #define CONTROL_PRPHRL_RST_OFST (11) // Only GBE10?
@@ -335,7 +357,8 @@
 #define CONTROL_MMRY_RST_OFST   (12)
 #define CONTROL_MMRY_RST_MSK    (0x00000001 << CONTROL_MMRY_RST_OFST)
 //#define CONTROL_PLL_RCNFG_WR_OFST           (13)
-//#define CONTROL_PLL_RCNFG_WR_MSK            (0x00000001 << CONTROL_PLL_RCNFG_WR_OFST)
+//#define CONTROL_PLL_RCNFG_WR_MSK            (0x00000001 <<
+// CONTROL_PLL_RCNFG_WR_OFST)
 #define CONTROL_SND_10GB_PCKT_OFST   (14)
 #define CONTROL_SND_10GB_PCKT_MSK    (0x00000001 << CONTROL_SND_10GB_PCKT_OFST)
 #define CONTROL_CLR_ACQSTN_FIFO_OFST (15)
@@ -348,7 +371,8 @@
 #define PLL_CNTRL_REG (0x51 << MEM_MAP_SHIFT)
 
 #define PLL_CNTRL_RCNFG_PRMTR_RST_OFST (0)
-#define PLL_CNTRL_RCNFG_PRMTR_RST_MSK		(0x00000001 << PLL_CNTRL_RCNFG_PRMTR_RST_OFST)
+#define PLL_CNTRL_RCNFG_PRMTR_RST_MSK                                          \
+    (0x00000001 << PLL_CNTRL_RCNFG_PRMTR_RST_OFST)
 #define PLL_CNTRL_WR_PRMTR_OFST (2)
 #define PLL_CNTRL_WR_PRMTR_MSK  (0x00000001 << PLL_CNTRL_WR_PRMTR_OFST)
 #define PLL_CNTRL_PLL_RST_OFST  (3)
@@ -378,7 +402,8 @@
 #define PATTERN_LOOP_0_ADDR_REG (0x54 << MEM_MAP_SHIFT)
 
 #define PATTERN_LOOP_0_ADDR_STRT_OFST (0)
-#define PATTERN_LOOP_0_ADDR_STRT_MSK        (0x00001FFF << PATTERN_LOOP_0_ADDR_STRT_OFST)
+#define PATTERN_LOOP_0_ADDR_STRT_MSK                                           \
+    (0x00001FFF << PATTERN_LOOP_0_ADDR_STRT_OFST)
 #define PATTERN_LOOP_0_ADDR_STP_OFST (16)
 #define PATTERN_LOOP_0_ADDR_STP_MSK  (0x00001FFF << PATTERN_LOOP_0_ADDR_STP_OFST)
 
@@ -389,7 +414,8 @@
 #define PATTERN_LOOP_1_ADDR_REG (0x56 << MEM_MAP_SHIFT)
 
 #define PATTERN_LOOP_1_ADDR_STRT_OFST (0)
-#define PATTERN_LOOP_1_ADDR_STRT_MSK        (0x00001FFF << PATTERN_LOOP_1_ADDR_STRT_OFST)
+#define PATTERN_LOOP_1_ADDR_STRT_MSK                                           \
+    (0x00001FFF << PATTERN_LOOP_1_ADDR_STRT_OFST)
 #define PATTERN_LOOP_1_ADDR_STP_OFST (16)
 #define PATTERN_LOOP_1_ADDR_STP_MSK  (0x00001FFF << PATTERN_LOOP_1_ADDR_STP_OFST)
 
@@ -400,7 +426,8 @@
 #define PATTERN_LOOP_2_ADDR_REG (0x58 << MEM_MAP_SHIFT)
 
 #define PATTERN_LOOP_2_ADDR_STRT_OFST (0)
-#define PATTERN_LOOP_2_ADDR_STRT_MSK        (0x00001FFF << PATTERN_LOOP_2_ADDR_STRT_OFST)
+#define PATTERN_LOOP_2_ADDR_STRT_MSK                                           \
+    (0x00001FFF << PATTERN_LOOP_2_ADDR_STRT_OFST)
 #define PATTERN_LOOP_2_ADDR_STP_OFST (16)
 #define PATTERN_LOOP_2_ADDR_STP_MSK  (0x00001FFF << PATTERN_LOOP_2_ADDR_STP_OFST)
 
@@ -445,7 +472,6 @@
 /* Number of Words RW register TODO */
 #define NUMBER_OF_WORDS_REG (0x5F << MEM_MAP_SHIFT)
 
-
 /* Delay 64 bit RW register. t = DLY x 50 ns. */
 #define DELAY_LSB_REG (0x60 << MEM_MAP_SHIFT)
 #define DELAY_MSB_REG (0x61 << MEM_MAP_SHIFT)
@@ -463,12 +489,14 @@
 #define PERIOD_MSB_REG (0x67 << MEM_MAP_SHIFT)
 
 /* Period 64 bit RW register */
-//#define EXPTIME_LSB_REG    			    (0x68 << MEM_MAP_SHIFT)                 // Not used in FW
-//#define EXPTIME_MSB_REG    			    (0x69 << MEM_MAP_SHIFT)                 // Not used in FW
+//#define EXPTIME_LSB_REG    			    (0x68 << MEM_MAP_SHIFT) //
+// Not used in FW #define EXPTIME_MSB_REG    			    (0x69 <<
+// MEM_MAP_SHIFT)                 // Not used in FW
 
 /* Gates 64 bit RW register */
-//#define GATES_LSB_REG                      (0x6A << MEM_MAP_SHIFT)                 // Not used in FW
-//#define GATES_MSB_REG                      (0x6B << MEM_MAP_SHIFT)                 // Not used in FW
+//#define GATES_LSB_REG                      (0x6A << MEM_MAP_SHIFT) // Not used
+// in FW #define GATES_MSB_REG                      (0x6B << MEM_MAP_SHIFT) //
+// Not used in FW
 
 /* Pattern IO Control 64 bit RW regiser
  * Each bit configured as output(1)/ input(0) */
@@ -505,7 +533,6 @@
 #define READOUT_10G_ENABLE_DGTL_OFST (8)
 #define READOUT_10G_ENABLE_DGTL_MSK  (0x00000001 << READOUT_10G_ENABLE_DGTL_OFST)
 
-
 /* Digital Bit External Trigger RW register */
 #define DBIT_EXT_TRG_REG (0x7B << MEM_MAP_SHIFT)
 
@@ -517,11 +544,15 @@
 /* Pin Delay 0 RW register */
 #define OUTPUT_DELAY_0_REG              (0x7C << MEM_MAP_SHIFT)
 #define OUTPUT_DELAY_0_OTPT_STTNG_STEPS (25)
-#define OUTPUT_DELAY_0_OTPT_STTNG_OFST      (0)     //t = OTPT_STTNG * 25 ps, max for Cyclone V = 775 ps
-#define OUTPUT_DELAY_0_OTPT_STTNG_MSK       (0x0000001F << OUTPUT_DELAY_0_OTPT_STTNG_OFST)
-// 1: load dynamic output settings, 0: trigger start of dynamic output delay configuration pn falling edge of ODT (output delay trigger) bit
+#define OUTPUT_DELAY_0_OTPT_STTNG_OFST                                         \
+    (0) // t = OTPT_STTNG * 25 ps, max for Cyclone V = 775 ps
+#define OUTPUT_DELAY_0_OTPT_STTNG_MSK                                          \
+    (0x0000001F << OUTPUT_DELAY_0_OTPT_STTNG_OFST)
+// 1: load dynamic output settings, 0: trigger start of dynamic output delay
+// configuration pn falling edge of ODT (output delay trigger) bit
 #define OUTPUT_DELAY_0_OTPT_TRGGR_OFST (31)
-#define OUTPUT_DELAY_0_OTPT_TRGGR_MSK       (0x00000001 << OUTPUT_DELAY_0_OTPT_TRGGR_OFST)
+#define OUTPUT_DELAY_0_OTPT_TRGGR_MSK                                          \
+    (0x00000001 << OUTPUT_DELAY_0_OTPT_TRGGR_OFST)
 #define OUTPUT_DELAY_0_OTPT_TRGGR_LD_VAL   (1)
 #define OUTPUT_DELAY_0_OTPT_TRGGR_STRT_VAL (0)
 
@@ -550,6 +581,3 @@
 
 /* Round Robin  */
 #define RXR_ENDPOINT_START_REG (0x1000 << MEM_MAP_SHIFT)
-
-
-

slsDetectorServers/ctbDetectorServer/slsDetectorServer_defs.h

@@ -1,7 +1,6 @@
 #pragma once
-#include "sls_detector_defs.h"
 #include "RegisterDefs.h"
-
+#include "sls_detector_defs.h"
 
 #define MIN_REQRD_VRSN_T_RD_API 0x181130
 #define REQRD_FRMWR_VRSN        0x191127
@@ -36,10 +35,53 @@ typedef struct udp_header_struct {
 #define UDP_IP_HEADER_LENGTH_BYTES (28)
 
 /* Enums */
-enum ADCINDEX				{V_PWR_IO, V_PWR_A, V_PWR_B, V_PWR_C, V_PWR_D, I_PWR_IO, I_PWR_A, I_PWR_B, I_PWR_C, I_PWR_D, S_ADC0, S_ADC1, S_ADC2, S_ADC3, S_ADC4, S_ADC5, S_ADC6, S_ADC7, S_TMP};
-enum DACINDEX               {D0, D1, D2, D3, D4, D5, D6, D7, D8, D9,
-                             D10, D11, D12, D13, D14, D15, D16, D17,
-                             D_PWR_D, D_PWR_CHIP, D_PWR_C, D_PWR_B, D_PWR_A, D_PWR_IO};
+enum ADCINDEX {
+    V_PWR_IO,
+    V_PWR_A,
+    V_PWR_B,
+    V_PWR_C,
+    V_PWR_D,
+    I_PWR_IO,
+    I_PWR_A,
+    I_PWR_B,
+    I_PWR_C,
+    I_PWR_D,
+    S_ADC0,
+    S_ADC1,
+    S_ADC2,
+    S_ADC3,
+    S_ADC4,
+    S_ADC5,
+    S_ADC6,
+    S_ADC7,
+    S_TMP
+};
+enum DACINDEX {
+    D0,
+    D1,
+    D2,
+    D3,
+    D4,
+    D5,
+    D6,
+    D7,
+    D8,
+    D9,
+    D10,
+    D11,
+    D12,
+    D13,
+    D14,
+    D15,
+    D16,
+    D17,
+    D_PWR_D,
+    D_PWR_CHIP,
+    D_PWR_C,
+    D_PWR_B,
+    D_PWR_A,
+    D_PWR_IO
+};
 enum CLKINDEX { RUN_CLK, ADC_CLK, SYNC_CLK, DBIT_CLK, NUM_CLOCKS };
 #define CLK_NAMES "run", "adc", "sync", "dbit"
 
@@ -85,16 +127,21 @@ enum CLKINDEX               {RUN_CLK, ADC_CLK, SYNC_CLK, DBIT_CLK, NUM_CLOCKS};
 #define VCHIP_MIN_MV    (1673)
 #define VCHIP_MAX_MV    (2668) // min dac val
 #define POWER_RGLTR_MIN (636)
-#define POWER_RGLTR_MAX             (2638) // min dac val (not vchip-max) because of dac conversions
+#define POWER_RGLTR_MAX                                                        \
+    (2638) // min dac val (not vchip-max) because of dac conversions
 #define VCHIP_POWER_INCRMNT (200)
 #define VIO_MIN_MV          (1200) // for fpga to function
 
 /* Defines in the Firmware */
 #define MAX_PATTERN_LENGTH (0x2000)
-#define DIGITAL_IO_DELAY_MAXIMUM_PS	((OUTPUT_DELAY_0_OTPT_STTNG_MSK >> OUTPUT_DELAY_0_OTPT_STTNG_OFST) * OUTPUT_DELAY_0_OTPT_STTNG_STEPS)
+#define DIGITAL_IO_DELAY_MAXIMUM_PS                                            \
+    ((OUTPUT_DELAY_0_OTPT_STTNG_MSK >> OUTPUT_DELAY_0_OTPT_STTNG_OFST) *       \
+     OUTPUT_DELAY_0_OTPT_STTNG_STEPS)
 #define MAX_PHASE_SHIFTS_STEPS (8)
 
-#define WAIT_TME_US_FR_ACQDONE_REG 	(100) // wait time in us after acquisition done to ensure there is no data in fifo
+#define WAIT_TME_US_FR_ACQDONE_REG                                             \
+    (100) // wait time in us after acquisition done to ensure there is no data
+          // in fifo
 #define WAIT_TIME_US_PLL           (10 * 1000)
 #define WAIT_TIME_US_STP_ACQ       (100)
 #define WAIT_TIME_CONFIGURE_MAC    (2 * 1000 * 1000)
@@ -109,4 +156,3 @@ enum CLKINDEX               {RUN_CLK, ADC_CLK, SYNC_CLK, DBIT_CLK, NUM_CLOCKS};
 
 #define MAXIMUM_ADC_CLK  (65)
 #define PLL_VCO_FREQ_MHZ (800)
-

slsDetectorServers/eigerDetectorServer/9mhvserial_bf.c

@@ -1,14 +1,14 @@
 #include "ansi.h"
 
-#include <termios.h>  	/* POSIX terminal control definitions */
+#include <errno.h>
+#include <fcntl.h>         // File control definitions
+#include <linux/i2c-dev.h> // I2C_SLAVE, __u8 reg
 #include <stdio.h>
 #include <stdlib.h>    // atoi
-#include <fcntl.h>			// File control definitions
-#include <sys/ioctl.h>		// ioctl
-#include <unistd.h>			// read, close
 #include <string.h>    // memset
-#include <linux/i2c-dev.h>	// I2C_SLAVE, __u8 reg
-#include <errno.h>
+#include <sys/ioctl.h> // ioctl
+#include <termios.h>   /* POSIX terminal control definitions */
+#include <unistd.h>    // read, close
 
 #define PORTNAME           "/dev/ttyBF1"
 #define GOODBYE            200
@@ -18,8 +18,6 @@
 //#define I2C_DEVICE_ADDRESS	0x48
 #define I2C_REGISTER_ADDRESS 0x40
 
-
-
 int i2c_open(const char *file, unsigned int addr) {
 
     // device file
@@ -37,7 +35,6 @@ int i2c_open(const char* file,unsigned int addr){
     return fd;
 }
 
-
 int i2c_read() {
 
     int fd = i2c_open(I2C_DEVICE_FILE, I2C_DEVICE_ADDRESS);
@@ -45,7 +42,8 @@ int i2c_read(){
 
     unsigned char buf = reg;
     if (write(fd, &buf, 1) != 1) {
-		LOG(logERROR, ("Warning: Unable to write read request to register %d\n", reg));
+        LOG(logERROR,
+            ("Warning: Unable to write read request to register %d\n", reg));
         return -1;
     }
     // read and update value (but old value read out)
@@ -62,7 +60,6 @@ int i2c_read(){
     return buf;
 }
 
-
 int i2c_write(unsigned int value) {
 
     __u8 val = value & 0xff;
@@ -76,7 +73,8 @@ int i2c_write(unsigned int value){
     buf[0] = reg;
     buf[1] = val;
     if (write(fd, buf, 2) != 2) {
-		LOG(logERROR, ("Warning: Unable to write %d to register %d\n",val, reg));
+        LOG(logERROR,
+            ("Warning: Unable to write %d to register %d\n", val, reg));
         return -1;
     }
 
@@ -84,10 +82,6 @@ int i2c_write(unsigned int value){
     return 0;
 }
 
-
-
-
-
 int main(int argc, char *argv[]) {
 
     int fd = open(PORTNAME, O_RDWR | O_NOCTTY | O_SYNC);
@@ -113,7 +107,8 @@ int main(int argc, char* argv[]) {
         LOG(logERROR, ("Warning: error form tcflush %d\n", errno));
         return 0;
     }
-	// set new options for the port, TCSANOW:changes occur immediately without waiting for data to complete
+    // set new options for the port, TCSANOW:changes occur immediately without
+    // waiting for data to complete
     if (tcsetattr(fd, TCSANOW, &serial_conf) < 0) {
         LOG(logERROR, ("Warning: error form tcsetattr %d\n", errno));
         return 0;
@@ -132,7 +127,6 @@ int main(int argc, char* argv[]) {
     buffer[BUFFERSIZE - 1] = '\n';
     LOG(logINFO, ("Ready...\n"));
 
-
     while (ret != GOODBYE) {
         memset(buffer, 0, BUFFERSIZE);
         n = read(fd, buffer, BUFFERSIZE);
@@ -183,7 +177,8 @@ int main(int argc, char* argv[]) {
                 sprintf(buffer, "%d ", ival);
                 n = write(fd, buffer, BUFFERSIZE);
                 LOG(logINFO, ("Sent %d Bytes\n", n));
-			}else LOG(logERROR, ("%s\n",buffer));
+            } else
+                LOG(logERROR, ("%s\n", buffer));
             break;
 
         case 'e':

slsDetectorServers/eigerDetectorServer/Beb.h

@@ -1,10 +1,9 @@
 #pragma once
 
-
+#include <stdlib.h>
 #include "LocalLinkInterface.h"
 #include "slsDetectorServer_defs.h"
 
-
 struct BebInfo {
     unsigned int beb_number;
     unsigned int serial_address;
@@ -16,11 +15,13 @@ struct BebInfo{
     unsigned int src_port_10GbE;
 };
 
-
 void BebInfo_BebInfo(struct BebInfo *bebInfo, unsigned int beb_num);
 void BebInfo_BebDstInfo(struct BebInfo *bebInfo, unsigned int beb_num);
 int BebInfo_SetSerialAddress(struct BebInfo *bebInfo, unsigned int add);
-int BebInfo_SetHeaderInfo(struct BebInfo* bebInfo, int ten_gig, char* src_mac, char* src_ip, unsigned int src_port);//src_port fixed 42000+beb_number or 52000 + beb_number);
+int BebInfo_SetHeaderInfo(
+    struct BebInfo *bebInfo, int ten_gig, char *src_mac, char *src_ip,
+    unsigned int
+        src_port); // src_port fixed 42000+beb_number or 52000 + beb_number);
 unsigned int BebInfo_GetBebNumber(struct BebInfo *bebInfo);
 unsigned int BebInfo_GetSerialAddress(struct BebInfo *bebInfo);
 char *BebInfo_GetSrcMAC(struct BebInfo *bebInfo, int ten_gig);
@@ -32,9 +33,8 @@ int Beb_InitBebInfos();
 int Beb_CheckSourceStuffBebInfo();
 unsigned int Beb_GetBebInfoIndex(unsigned int beb_numb);
 
-
 void Beb_GetModuleConfiguration(int *master, int *top, int *normal);
-void Beb_EndofDataSend(int tengiga);
+int Beb_IsTransmitting(int *retval, int tengiga, int waitForDelay);
 
 int Beb_SetMasterViaSoftware();
 int Beb_SetSlaveViaSoftware();
@@ -61,22 +61,38 @@ int Beb_SetIP(char* ip, uint8_t* dst_ptr);
 int Beb_SetPortNumber(unsigned int port_number, uint8_t *dst_ptr);
 void Beb_AdjustIPChecksum(struct udp_header_type *ip);
 
-int Beb_SetHeaderData(unsigned int beb_number, int ten_gig, char* dst_mac, char* dst_ip, unsigned int dst_port);
-int Beb_SetHeaderData1(char* src_mac, char* src_ip, unsigned int src_port, char* dst_mac, char* dst_ip, unsigned int dst_port);
+int Beb_SetHeaderData(unsigned int beb_number, int ten_gig, char *dst_mac,
+                      char *dst_ip, unsigned int dst_port);
+int Beb_SetHeaderData1(char *src_mac, char *src_ip, unsigned int src_port,
+                       char *dst_mac, char *dst_ip, unsigned int dst_port);
 
 void Beb_SwapDataFun(int little_endian, unsigned int n, unsigned int *d);
 int Beb_SetByteOrder();
 void Beb_Beb();
-int Beb_SetBebSrcHeaderInfos(unsigned int beb_number, int ten_gig, char* src_mac, char* src_ip, unsigned int src_port);
-int Beb_SetUpUDPHeader(unsigned int beb_number, int ten_gig, unsigned int header_number, char* dst_mac, char* dst_ip, unsigned int dst_port);
+int Beb_SetBebSrcHeaderInfos(unsigned int beb_number, int ten_gig,
+                             char *src_mac, char *src_ip,
+                             unsigned int src_port);
+int Beb_SetUpUDPHeader(unsigned int beb_number, int ten_gig,
+                       unsigned int header_number, char *dst_mac, char *dst_ip,
+                       unsigned int dst_port);
 
-/*int Beb_SendMultiReadRequest(unsigned int beb_number, unsigned int  left_right, int ten_gig, unsigned int dst_number, unsigned int npackets, unsigned int packet_size, int stop_read_when_fifo_empty=1);*/
-int Beb_SendMultiReadRequest(unsigned int beb_number, unsigned int  left_right, int ten_gig, unsigned int dst_number, unsigned int npackets, unsigned int packet_size, int stop_read_when_fifo_empty);
+/*int Beb_SendMultiReadRequest(unsigned int beb_number, unsigned int
+ * left_right, int ten_gig, unsigned int dst_number, unsigned int npackets,
+ * unsigned int packet_size, int stop_read_when_fifo_empty=1);*/
+int Beb_SendMultiReadRequest(unsigned int beb_number, unsigned int left_right,
+                             int ten_gig, unsigned int dst_number,
+                             unsigned int npackets, unsigned int packet_size,
+                             int stop_read_when_fifo_empty);
 
 int Beb_StopAcquisition();
 int Beb_SetUpTransferParameters(short the_bit_mode);
-/*int Beb_RequestNImages(unsigned int beb_number, unsigned int left_right, int ten_gig, unsigned int dst_number, unsigned int nimages, int test_just_send_out_packets_no_wait=0); //all images go to the same destination!*/
-int Beb_RequestNImages(unsigned int beb_number, int ten_gig, unsigned int dst_number, unsigned int nimages, int test_just_send_out_packets_no_wait);
+/*int Beb_RequestNImages(unsigned int beb_number, unsigned int left_right, int
+ * ten_gig, unsigned int dst_number, unsigned int nimages, int
+ * test_just_send_out_packets_no_wait=0); //all images go to the same
+ * destination!*/
+int Beb_RequestNImages(unsigned int beb_number, int ten_gig,
+                       unsigned int dst_number, unsigned int nimages,
+                       int test_just_send_out_packets_no_wait);
 
 int Beb_Test(unsigned int beb_number);
 
@@ -97,5 +113,3 @@ int Beb_open(u_int32_t** csp0base, u_int32_t offset);
 u_int32_t Beb_Read32(u_int32_t *baseaddr, u_int32_t offset);
 u_int32_t Beb_Write32(u_int32_t *baseaddr, u_int32_t offset, u_int32_t data);
 void Beb_close(int fd, u_int32_t *csp0base);
-
-

slsDetectorServers/eigerDetectorServer/CMakeLists.txt

@@ -5,6 +5,7 @@ set(src
     ../slsDetectorServer/src/communication_funcs.c
     ../slsDetectorServer/src/communication_funcs_UDP.c
     ../slsDetectorServer/src/common.c
+    ../slsDetectorServer/src/communication_virtual.c
 )
 
 include_directories(
@@ -22,7 +23,7 @@ target_include_directories(eigerDetectorServerMaster_virtual
 
 target_compile_definitions(eigerDetectorServerMaster_virtual
     PUBLIC EIGERD PCCOMPILE STOP_SERVER
-    PUBLIC VIRTUAL DVIRTUAL_9M
+    PUBLIC VIRTUAL #VIRTUAL_9M
     PUBLIC VIRTUAL_MASTER
 )
 
@@ -38,27 +39,60 @@ install(TARGETS eigerDetectorServerMaster_virtual
     RUNTIME  DESTINATION ${CMAKE_INSTALL_BINDIR}
 )
 
-add_executable(eigerDetectorServerSlave_virtual 
+
+
+
+
+add_executable(eigerDetectorServerSlaveTop_virtual 
     ${src}
 )
 
-target_include_directories(eigerDetectorServerSlave_virtual
+target_include_directories(eigerDetectorServerSlaveTop_virtual
     PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}
 )
 
-target_compile_definitions(eigerDetectorServerSlave_virtual
+target_compile_definitions(eigerDetectorServerSlaveTop_virtual
     PUBLIC EIGERD PCCOMPILE STOP_SERVER
-    PUBLIC VIRTUAL DVIRTUAL_9M
+    PUBLIC VIRTUAL #VIRTUAL_9M
+    PUBLIC VIRTUAL_TOP
 )
 
-target_link_libraries(eigerDetectorServerSlave_virtual
+target_link_libraries(eigerDetectorServerSlaveTop_virtual
     PUBLIC pthread rt
 )
 
-set_target_properties(eigerDetectorServerSlave_virtual PROPERTIES
+set_target_properties(eigerDetectorServerSlaveTop_virtual PROPERTIES
     RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
 )
 
-install(TARGETS eigerDetectorServerSlave_virtual
+install(TARGETS eigerDetectorServerSlaveTop_virtual
+    RUNTIME  DESTINATION ${CMAKE_INSTALL_BINDIR}
+)
+
+
+
+
+add_executable(eigerDetectorServerSlaveBottom_virtual 
+    ${src}
+)
+
+target_include_directories(eigerDetectorServerSlaveBottom_virtual
+    PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}
+)
+
+target_compile_definitions(eigerDetectorServerSlaveBottom_virtual
+    PUBLIC EIGERD PCCOMPILE STOP_SERVER
+    PUBLIC VIRTUAL #VIRTUAL_9M
+)
+
+target_link_libraries(eigerDetectorServerSlaveBottom_virtual
+    PUBLIC pthread rt
+)
+
+set_target_properties(eigerDetectorServerSlaveBottom_virtual PROPERTIES
+    RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
+)
+
+install(TARGETS eigerDetectorServerSlaveBottom_virtual
     RUNTIME  DESTINATION ${CMAKE_INSTALL_BINDIR}
 )

slsDetectorServers/eigerDetectorServer/FebControl.h

@@ -2,7 +2,6 @@
 #include "FebInterface.h"
 #include <netinet/in.h>
 
-
 struct Module {
     unsigned int module_number;
     int top_address_valid;
@@ -19,10 +18,12 @@ struct Module{
     int *bottom_dac;
 };
 
-
-void Module_Module(struct Module* mod,unsigned int number, unsigned int address_top);
-void Module_ModuleBottom(struct Module* mod,unsigned int number, unsigned int address_bottom);
-void Module_Module1(struct Module* mod,unsigned int number, unsigned int address_top, unsigned int address_bottom);
+void Module_Module(struct Module *mod, unsigned int number,
+                   unsigned int address_top);
+void Module_ModuleBottom(struct Module *mod, unsigned int number,
+                         unsigned int address_bottom);
+void Module_Module1(struct Module *mod, unsigned int number,
+                    unsigned int address_top, unsigned int address_bottom);
 unsigned int Module_GetModuleNumber(struct Module *mod);
 int Module_TopAddressIsValid(struct Module *mod);
 unsigned int Module_GetTopBaseAddress(struct Module *mod);
@@ -32,9 +33,11 @@ unsigned int Module_GetBottomBaseAddress(struct Module* mod);
 int Module_BottomAddressIsValid(struct Module *mod);
 unsigned int Module_GetBottomLeftAddress(struct Module *mod);
 unsigned int Module_GetBottomRightAddress(struct Module *mod);
-unsigned int Module_SetTopIDelay(struct Module* mod,unsigned int chip,unsigned int value);
+unsigned int Module_SetTopIDelay(struct Module *mod, unsigned int chip,
+                                 unsigned int value);
 unsigned int Module_GetTopIDelay(struct Module *mod, unsigned int chip);
-unsigned int Module_SetBottomIDelay(struct Module* mod,unsigned int chip,unsigned int value);
+unsigned int Module_SetBottomIDelay(struct Module *mod, unsigned int chip,
+                                    unsigned int value);
 unsigned int Module_GetBottomIDelay(struct Module *mod, unsigned int chip);
 
 float Module_SetHighVoltage(struct Module *mod, float value);
@@ -45,29 +48,36 @@ int Module_GetTopDACValue(struct Module* mod,unsigned int i);
 int Module_SetBottomDACValue(struct Module *mod, unsigned int i, int value);
 int Module_GetBottomDACValue(struct Module *mod, unsigned int i);
 
-
 void Feb_Control_activate(int activate);
 
 int Feb_Control_IsBottomModule();
 int Feb_Control_GetModuleNumber();
 
 void Feb_Control_PrintModuleList();
-int Feb_Control_GetModuleIndex(unsigned int module_number, unsigned int* module_index);
+int Feb_Control_GetModuleIndex(unsigned int module_number,
+                               unsigned int *module_index);
 int Feb_Control_CheckModuleAddresses(struct Module *m);
 int Feb_Control_AddModule(unsigned int module_number, unsigned int top_address);
-int Feb_Control_AddModule1(unsigned int module_number, int top_enable, unsigned int top_address, unsigned int bottom_address, int half_module);
+int Feb_Control_AddModule1(unsigned int module_number, int top_enable,
+                           unsigned int top_address,
+                           unsigned int bottom_address, int half_module);
 int Feb_Control_GetDACNumber(char *s, unsigned int *n);
-int  Feb_Control_SendDACValue(unsigned int dst_num, unsigned int ch, unsigned int* value);
-int  Feb_Control_VoltageToDAC(float value, unsigned int* digital, unsigned int nsteps, float vmin, float vmax);
-float Feb_Control_DACToVoltage(unsigned int digital,unsigned int nsteps,float vmin,float vmax);
-int Feb_Control_SendIDelays(unsigned int dst_num, int chip_lr, unsigned int channels, unsigned int ndelay_units);
+int Feb_Control_SendDACValue(unsigned int dst_num, unsigned int ch,
+                             unsigned int *value);
+int Feb_Control_VoltageToDAC(float value, unsigned int *digital,
+                             unsigned int nsteps, float vmin, float vmax);
+float Feb_Control_DACToVoltage(unsigned int digital, unsigned int nsteps,
+                               float vmin, float vmax);
+int Feb_Control_SendIDelays(unsigned int dst_num, int chip_lr,
+                            unsigned int channels, unsigned int ndelay_units);
 int Feb_Control_SetStaticBits();
 int Feb_Control_SetStaticBits1(unsigned int the_static_bits);
 int Feb_Control_SendBitModeToBebServer();
 unsigned int Feb_Control_ConvertTimeToRegister(float time_in_sec);
 unsigned int Feb_Control_AddressToAll();
 int Feb_Control_SetCommandRegister(unsigned int cmd);
-int Feb_Control_GetDAQStatusRegister(unsigned int dst_address, unsigned int* ret_status);
+int Feb_Control_GetDAQStatusRegister(unsigned int dst_address,
+                                     unsigned int *ret_status);
 int Feb_Control_StartDAQOnlyNWaitForFinish(int sleep_time_us);
 int Feb_Control_ResetChipCompletely();
 int Feb_Control_ResetChipPartially();
@@ -86,16 +96,19 @@ int Feb_Control_SendHighVoltage(int dacvalue);
 int Feb_Control_ReceiveHighVoltage(unsigned int *value);
 
 int Feb_Control_SetIDelays(unsigned int module_num, unsigned int ndelay_units);
-int Feb_Control_SetIDelays1(unsigned int module_num, unsigned int chip_pos, unsigned int ndelay_units);
+int Feb_Control_SetIDelays1(unsigned int module_num, unsigned int chip_pos,
+                            unsigned int ndelay_units);
 
-int Feb_Control_DecodeDACString(char* dac_str, unsigned int* module_index, int* top, int* bottom, unsigned int* dac_ch);
+int Feb_Control_DecodeDACString(char *dac_str, unsigned int *module_index,
+                                int *top, int *bottom, unsigned int *dac_ch);
 int Feb_Control_SetDAC(char *s, int value, int is_a_voltage_mv);
 int Feb_Control_GetDAC(char *s, int *ret_value, int voltage_mv);
 int Feb_Control_GetDACName(unsigned int dac_num, char *s);
 
-int Feb_Control_SetTrimbits(unsigned int module_num, unsigned int* trimbits);
+int Feb_Control_SetTrimbits(unsigned int module_num, unsigned int *trimbits,
+                            int top);
 unsigned int *Feb_Control_GetTrimbits();
-int Feb_Control_SaveAllTrimbitsTo(int value);
+int Feb_Control_SaveAllTrimbitsTo(int value, int top);
 int Feb_Control_Reset();
 int Feb_Control_PrepareForAcquisition();
 
@@ -111,7 +124,8 @@ unsigned int Feb_Control_GetNExposures();
 int Feb_Control_SetExposureTime(double the_exposure_time_in_sec);
 double Feb_Control_GetExposureTime();
 int64_t Feb_Control_GetExposureTime_in_nsec();
-int Feb_Control_SetSubFrameExposureTime(int64_t the_subframe_exposure_time_in_10nsec);
+int Feb_Control_SetSubFrameExposureTime(
+    int64_t the_subframe_exposure_time_in_10nsec);
 int64_t Feb_Control_GetSubFrameExposureTime();
 int Feb_Control_SetSubFramePeriod(int64_t the_subframe_period_in_10nsec);
 int64_t Feb_Control_GetSubFramePeriod();
@@ -119,10 +133,17 @@ int Feb_Control_SetExposurePeriod(double the_exposure_period_in_sec);
 double Feb_Control_GetExposurePeriod();
 int Feb_Control_SetDynamicRange(unsigned int four_eight_sixteen_or_thirtytwo);
 unsigned int Feb_Control_GetDynamicRange();
-int Feb_Control_SetReadoutSpeed(unsigned int readout_speed); //0 was default, 0->full,1->half,2->quarter or 3->super_slow
-int Feb_Control_SetReadoutMode(unsigned int readout_mode); ///0 was default,0->parallel,1->non-parallel,2-> safe_mode
-int Feb_Control_SetTriggerMode(unsigned int trigger_mode, int polarity);//0 and 1 was default,
-int Feb_Control_SetExternalEnableMode(int use_external_enable, int polarity);//0 and 1 was default,
+int Feb_Control_SetReadoutSpeed(
+    unsigned int readout_speed); // 0 was default, 0->full,1->half,2->quarter or
+                                 // 3->super_slow
+int Feb_Control_SetReadoutMode(
+    unsigned int readout_mode); /// 0 was
+                                /// default,0->parallel,1->non-parallel,2->
+                                /// safe_mode
+int Feb_Control_SetTriggerMode(unsigned int trigger_mode,
+                               int polarity); // 0 and 1 was default,
+int Feb_Control_SetExternalEnableMode(int use_external_enable,
+                                      int polarity); // 0 and 1 was default,
 
 int Feb_Control_SetInTestModeVariable(int on);
 int Feb_Control_GetTestModeVariable();
@@ -159,4 +180,3 @@ int Feb_Control_GetReadNLines();
 
 int Feb_Control_WriteRegister(uint32_t offset, uint32_t data);
 int Feb_Control_ReadRegister(uint32_t offset, uint32_t *retval);
-

slsDetectorServers/eigerDetectorServer/FebInterface.c

@@ -1,12 +1,10 @@
 #include "FebInterface.h"
 #include "LocalLinkInterface.h"
-#include "xparameters.h"
 #include "clogger.h"
+#include "xparameters.h"
 
 #include <unistd.h>
 
-
-
 struct LocalLinkInterface ll_local, *ll;
 
 unsigned int Feb_Interface_nfebs;
@@ -22,7 +20,6 @@ unsigned int  Feb_Interface_recv_buffer_size;
 unsigned int *Feb_Interface_recv_data_raw;
 unsigned int *Feb_Interface_recv_data;
 
-
 void Feb_Interface_FebInterface() {
     ll = &ll_local;
     Feb_Interface_nfebs = 0;
@@ -30,46 +27,54 @@ void Feb_Interface_FebInterface() {
 
     Feb_Interface_send_ndata = 0;
     Feb_Interface_send_buffer_size = 1026;
-	Feb_Interface_send_data_raw = malloc((Feb_Interface_send_buffer_size+1) * sizeof(unsigned int));
+    Feb_Interface_send_data_raw =
+        malloc((Feb_Interface_send_buffer_size + 1) * sizeof(unsigned int));
     Feb_Interface_send_data = &Feb_Interface_send_data_raw[1];
 
     Feb_Interface_recv_ndata = 0;
     Feb_Interface_recv_buffer_size = 1026;
-	Feb_Interface_recv_data_raw = malloc((Feb_Interface_recv_buffer_size+1) * sizeof(unsigned int));
+    Feb_Interface_recv_data_raw =
+        malloc((Feb_Interface_recv_buffer_size + 1) * sizeof(unsigned int));
     Feb_Interface_recv_data = &Feb_Interface_recv_data_raw[1];
 
-	Local_LocalLinkInterface1(ll,XPAR_PLB_LL_FIFO_AURORA_DUAL_CTRL_FEB_RIGHT_BASEADDR);
-
+    Local_LocalLinkInterface1(
+        ll, XPAR_PLB_LL_FIFO_AURORA_DUAL_CTRL_FEB_RIGHT_BASEADDR);
 }
 
-
-
 void Feb_Interface_SendCompleteList(unsigned int n, unsigned int *list) {
     unsigned int i;
-	if (Feb_Interface_feb_numb) free(Feb_Interface_feb_numb);
+    if (Feb_Interface_feb_numb)
+        free(Feb_Interface_feb_numb);
     Feb_Interface_nfebs = n;
     Feb_Interface_feb_numb = malloc(n * sizeof(unsigned int));
-	for(i=0;i<n;i++) Feb_Interface_feb_numb[i] = list[i];
+    for (i = 0; i < n; i++)
+        Feb_Interface_feb_numb[i] = list[i];
 }
 
 int Feb_Interface_WriteTo(unsigned int ch) {
-	if (ch>0xfff) return 0;
+    if (ch > 0xfff)
+        return 0;
 
     LOG(logDEBUG1, ("FIW ch %d\n", ch));
 
     Feb_Interface_send_data_raw[0] = 0x8fff0000;
-if (Local_Write(ll,4,Feb_Interface_send_data_raw)!=4) return 0;
+    if (Local_Write(ll, 4, Feb_Interface_send_data_raw) != 4)
+        return 0;
 
     Feb_Interface_send_data_raw[0] = 0x90000000 | (ch << 16);
-if (Local_Write(ll,4,Feb_Interface_send_data_raw)!=4) return 0;
+    if (Local_Write(ll, 4, Feb_Interface_send_data_raw) != 4)
+        return 0;
 
     Feb_Interface_send_data_raw[0] = 0xc0000000;
-return ((Feb_Interface_send_ndata+1)*4==Local_Write(ll,(Feb_Interface_send_ndata+1)*4,Feb_Interface_send_data_raw));
+    return ((Feb_Interface_send_ndata + 1) * 4 ==
+            Local_Write(ll, (Feb_Interface_send_ndata + 1) * 4,
+                        Feb_Interface_send_data_raw));
 }
 
 int Feb_Interface_ReadFrom(unsigned int ch, unsigned int ntrys) {
     unsigned int t;
-	if (ch>=0xfff) return 0;
+    if (ch >= 0xfff)
+        return 0;
 
     Feb_Interface_recv_data_raw[0] = 0xa0000000 | (ch << 16);
     Local_Write(ll, 4, Feb_Interface_recv_data_raw);
@@ -77,7 +82,10 @@ int Feb_Interface_ReadFrom(unsigned int ch, unsigned int ntrys) {
 
     Feb_Interface_recv_ndata = -1;
     for (t = 0; t < ntrys; t++) {
-		if ((Feb_Interface_recv_ndata=Local_Read(ll,Feb_Interface_recv_buffer_size*4,Feb_Interface_recv_data_raw)/4)>0) {
+        if ((Feb_Interface_recv_ndata =
+                 Local_Read(ll, Feb_Interface_recv_buffer_size * 4,
+                            Feb_Interface_recv_data_raw) /
+                 4) > 0) {
             Feb_Interface_recv_ndata--;
             break;
         }
@@ -87,80 +95,110 @@ int Feb_Interface_ReadFrom(unsigned int ch, unsigned int ntrys) {
     return (Feb_Interface_recv_ndata >= 0);
 }
 
-
-
 int Feb_Interface_SetByteOrder() {
     Feb_Interface_send_data_raw[0] = 0x8fff0000;
-	if (Local_Write(ll,4,Feb_Interface_send_data_raw)!=4) return 0;
+    if (Local_Write(ll, 4, Feb_Interface_send_data_raw) != 4)
+        return 0;
     Feb_Interface_send_ndata = 2;
     Feb_Interface_send_data[0] = 0;
     Feb_Interface_send_data[1] = 0;
     unsigned int i;
     unsigned int dst = 0xff;
-	for(i=0;i<Feb_Interface_nfebs;i++) dst = (dst | Feb_Interface_feb_numb[i]);
+    for (i = 0; i < Feb_Interface_nfebs; i++)
+        dst = (dst | Feb_Interface_feb_numb[i]);
     int passed = Feb_Interface_WriteTo(dst);
 
     return passed;
 }
 
-
-int Feb_Interface_ReadRegister(unsigned int sub_num, unsigned int reg_num,unsigned int* value_read) {
+int Feb_Interface_ReadRegister(unsigned int sub_num, unsigned int reg_num,
+                               unsigned int *value_read) {
     return Feb_Interface_ReadRegisters(sub_num, 1, &reg_num, value_read);
 }
 
-
-int Feb_Interface_ReadRegisters(unsigned int sub_num, unsigned int nreads, unsigned int* reg_nums,unsigned int* values_read) {
+int Feb_Interface_ReadRegisters(unsigned int sub_num, unsigned int nreads,
+                                unsigned int *reg_nums,
+                                unsigned int *values_read) {
     // here   cout<<"Reading Register ...."<<endl;
     unsigned int i;
     nreads &= 0x3ff;
-	if (!nreads||nreads>Feb_Interface_send_buffer_size-2) return 0;
+    if (!nreads || nreads > Feb_Interface_send_buffer_size - 2)
+        return 0;
 
     Feb_Interface_send_ndata = nreads + 2;
     Feb_Interface_send_data[0] = 0x20000000 | nreads << 14;
 
-	for(i=0;i<nreads;i++) Feb_Interface_send_data[i+1]=reg_nums[i];
+    for (i = 0; i < nreads; i++)
+        Feb_Interface_send_data[i + 1] = reg_nums[i];
     Feb_Interface_send_data[nreads + 1] = 0;
 
-	if (!Feb_Interface_WriteTo(sub_num)||!Feb_Interface_ReadFrom(sub_num,20)||Feb_Interface_recv_ndata!=(int)(nreads+2)) return 0;
+    if (!Feb_Interface_WriteTo(sub_num) ||
+        !Feb_Interface_ReadFrom(sub_num, 20) ||
+        Feb_Interface_recv_ndata != (int)(nreads + 2))
+        return 0;
 
-	for(i=0;i<nreads;i++) values_read[i] = Feb_Interface_recv_data[i+1];
+    for (i = 0; i < nreads; i++)
+        values_read[i] = Feb_Interface_recv_data[i + 1];
 
     return 1;
 }
 
-int Feb_Interface_WriteRegister(unsigned int sub_num, unsigned int reg_num,unsigned int value, int wait_on, unsigned int wait_on_address) {
-	return Feb_Interface_WriteRegisters(sub_num,1,&reg_num,&value,&wait_on,&wait_on_address);
+int Feb_Interface_WriteRegister(unsigned int sub_num, unsigned int reg_num,
+                                unsigned int value, int wait_on,
+                                unsigned int wait_on_address) {
+    return Feb_Interface_WriteRegisters(sub_num, 1, &reg_num, &value, &wait_on,
+                                        &wait_on_address);
 }
 
-int Feb_Interface_WriteRegisters(unsigned int sub_num, unsigned int nwrites, unsigned int* reg_nums, unsigned int* values, int* wait_ons, unsigned int* wait_on_addresses) {
+int Feb_Interface_WriteRegisters(unsigned int sub_num, unsigned int nwrites,
+                                 unsigned int *reg_nums, unsigned int *values,
+                                 int *wait_ons,
+                                 unsigned int *wait_on_addresses) {
     unsigned int i;
     nwrites &= 0x3ff; // 10 bits
-	if (!nwrites||2*nwrites>Feb_Interface_send_buffer_size-2) return 0;
+    if (!nwrites || 2 * nwrites > Feb_Interface_send_buffer_size - 2)
+        return 0;
 
-	//cout<<"Write register : "<<this<<"  "<<s_num<<" "<<nwrites<<" "<<reg_nums<<" "<<values<<" "<<wait_ons<<" "<<wait_on_addresses<<endl;
+    // cout<<"Write register : "<<this<<"  "<<s_num<<" "<<nwrites<<"
+    // "<<reg_nums<<" "<<values<<" "<<wait_ons<<" "<<wait_on_addresses<<endl;
     Feb_Interface_send_ndata = 2 * nwrites + 2;
     Feb_Interface_send_data[0] = 0x80000000 | nwrites << 14;
     Feb_Interface_send_data[2 * nwrites + 1] = 0;
 
-	for(i=0;i<nwrites;i++) Feb_Interface_send_data[2*i+1] = 0x3fff&reg_nums[i];
-	for(i=0;i<nwrites;i++) Feb_Interface_send_data[2*i+2] = values[i];
+    for (i = 0; i < nwrites; i++)
+        Feb_Interface_send_data[2 * i + 1] = 0x3fff & reg_nums[i];
+    for (i = 0; i < nwrites; i++)
+        Feb_Interface_send_data[2 * i + 2] = values[i];
     // wait on busy data(28), address of busy flag data(27 downto 14)
-	if (wait_ons&&wait_on_addresses) for(i=0;i<nwrites;i++) Feb_Interface_send_data[2*i+1] |= (wait_ons[i]<<28 | (0x3fff&wait_on_addresses[i])<<14);
+    if (wait_ons && wait_on_addresses)
+        for (i = 0; i < nwrites; i++)
+            Feb_Interface_send_data[2 * i + 1] |=
+                (wait_ons[i] << 28 | (0x3fff & wait_on_addresses[i]) << 14);
 
-	if (!Feb_Interface_WriteTo(sub_num)) return 0;
+    if (!Feb_Interface_WriteTo(sub_num))
+        return 0;
 
     return 1;
 }
 
-int Feb_Interface_WriteMemoryInLoops(unsigned int sub_num, unsigned int mem_num, unsigned int start_address, unsigned int nwrites, unsigned int *values) {
+int Feb_Interface_WriteMemoryInLoops(unsigned int sub_num, unsigned int mem_num,
+                                     unsigned int start_address,
+                                     unsigned int nwrites,
+                                     unsigned int *values) {
     unsigned int max_single_packet_size = 352;
     int passed = 1;
     unsigned int n_to_send = max_single_packet_size;
     unsigned int ndata_sent = 0;
     unsigned int ndata_countdown = nwrites;
     while (ndata_countdown > 0) {
-		n_to_send = ndata_countdown<max_single_packet_size ? ndata_countdown:max_single_packet_size;
-		if (!Feb_Interface_WriteMemory(sub_num,mem_num,start_address,n_to_send,&(values[ndata_sent]))) {passed=0; break;}
+        n_to_send = ndata_countdown < max_single_packet_size
+                        ? ndata_countdown
+                        : max_single_packet_size;
+        if (!Feb_Interface_WriteMemory(sub_num, mem_num, start_address,
+                                       n_to_send, &(values[ndata_sent]))) {
+            passed = 0;
+            break;
+        }
         ndata_countdown -= n_to_send;
         ndata_sent += n_to_send;
         start_address += n_to_send;
@@ -169,7 +207,9 @@ int Feb_Interface_WriteMemoryInLoops(unsigned int sub_num, unsigned int mem_num,
     return passed;
 }
 
-int Feb_Interface_WriteMemory(unsigned int sub_num, unsigned int mem_num, unsigned int start_address, unsigned int nwrites, unsigned int *values) {
+int Feb_Interface_WriteMemory(unsigned int sub_num, unsigned int mem_num,
+                              unsigned int start_address, unsigned int nwrites,
+                              unsigned int *values) {
     // -1 means write to all
     unsigned int i;
     mem_num &= 0x3f;
@@ -181,15 +221,16 @@ int Feb_Interface_WriteMemory(unsigned int sub_num, unsigned int mem_num, unsign
     } //*d-1026
 
     Feb_Interface_send_ndata = nwrites + 2; //*d-1026
-	Feb_Interface_send_data[0]         = 0xc0000000 | mem_num << 24 | nwrites << 14 | start_address; //cmd -> write to memory, nwrites, mem number, start address
+    Feb_Interface_send_data[0] =
+        0xc0000000 | mem_num << 24 | nwrites << 14 |
+        start_address; // cmd -> write to memory, nwrites, mem number, start
+                       // address
     Feb_Interface_send_data[nwrites + 1] = 0;
-	for(i=0;i<nwrites;i++) Feb_Interface_send_data[i+1] = values[i];
+    for (i = 0; i < nwrites; i++)
+        Feb_Interface_send_data[i + 1] = values[i];
 
-
-	if (!Feb_Interface_WriteTo(sub_num)) return 0;
+    if (!Feb_Interface_WriteTo(sub_num))
+        return 0;
 
     return 1;
 }
-
-
-

slsDetectorServers/eigerDetectorServer/FebInterface.h

@@ -5,10 +5,22 @@ int Feb_Interface_ReadFrom(unsigned int ch, unsigned int ntrys);
 void Feb_Interface_FebInterface();
 void Feb_Interface_SendCompleteList(unsigned int n, unsigned int *list);
 int Feb_Interface_SetByteOrder();
-int Feb_Interface_ReadRegister(unsigned int sub_num, unsigned int reg_num,unsigned int* value_read);
-int Feb_Interface_ReadRegisters(unsigned int sub_num, unsigned int nreads, unsigned int* reg_nums,unsigned int* values_read);
-int Feb_Interface_WriteRegister(unsigned int sub_num, unsigned int reg_num,unsigned int value, int wait_on, unsigned int wait_on_address);
-int Feb_Interface_WriteRegisters(unsigned int sub_num, unsigned int nwrites, unsigned int* reg_nums, unsigned int* values, int* wait_ons, unsigned int* wait_on_addresses);
-int Feb_Interface_WriteMemoryInLoops(unsigned int sub_num, unsigned int mem_num, unsigned int start_address, unsigned int nwrites, unsigned int *values);
-int Feb_Interface_WriteMemory(unsigned int sub_num, unsigned int mem_num, unsigned int start_address, unsigned int nwrites, unsigned int *values);
-
+int Feb_Interface_ReadRegister(unsigned int sub_num, unsigned int reg_num,
+                               unsigned int *value_read);
+int Feb_Interface_ReadRegisters(unsigned int sub_num, unsigned int nreads,
+                                unsigned int *reg_nums,
+                                unsigned int *values_read);
+int Feb_Interface_WriteRegister(unsigned int sub_num, unsigned int reg_num,
+                                unsigned int value, int wait_on,
+                                unsigned int wait_on_address);
+int Feb_Interface_WriteRegisters(unsigned int sub_num, unsigned int nwrites,
+                                 unsigned int *reg_nums, unsigned int *values,
+                                 int *wait_ons,
+                                 unsigned int *wait_on_addresses);
+int Feb_Interface_WriteMemoryInLoops(unsigned int sub_num, unsigned int mem_num,
+                                     unsigned int start_address,
+                                     unsigned int nwrites,
+                                     unsigned int *values);
+int Feb_Interface_WriteMemory(unsigned int sub_num, unsigned int mem_num,
+                              unsigned int start_address, unsigned int nwrites,
+                              unsigned int *values);

slsDetectorServers/eigerDetectorServer/FebRegisterDefs.h

@@ -22,16 +22,16 @@
 #define DAQ_REG_HRDWRE_TOP_OFST        (1)
 #define DAQ_REG_HRDWRE_TOP_MSK         (0x00000001 << DAQ_REG_HRDWRE_TOP_OFST)
 #define DAQ_REG_HRDWRE_INTRRPT_SF_OFST (2)
-#define DAQ_REG_HRDWRE_INTRRPT_SF_MSK   (0x00000001 << DAQ_REG_HRDWRE_INTRRPT_SF_OFST)
+#define DAQ_REG_HRDWRE_INTRRPT_SF_MSK                                          \
+    (0x00000001 << DAQ_REG_HRDWRE_INTRRPT_SF_OFST)
 
 #define DAQ_REG_RO_OFFSET 20
-#define DAQ_REG_STATUS					(DAQ_REG_RO_OFFSET + 0) //also pg and fifo status register
+#define DAQ_REG_STATUS                                                         \
+    (DAQ_REG_RO_OFFSET + 0) // also pg and fifo status register
 #define FEB_REG_STATUS     (DAQ_REG_RO_OFFSET + 3)
 #define MEAS_SUBPERIOD_REG (DAQ_REG_RO_OFFSET + 4)
 #define MEAS_PERIOD_REG    (DAQ_REG_RO_OFFSET + 5)
 
-
-
 #define DAQ_CTRL_RESET 0x80000000
 #define DAQ_CTRL_START 0x40000000
 #define ACQ_CTRL_START 0x50000000 // this is 0x10000000 (acq) | 0x40000000 (daq)
@@ -54,7 +54,8 @@
 
 #define DAQ_IGNORE_INITIAL_CRAP 0x00000400 // crap before readout
 #define DAQ_READOUT_NROWS       0x00000800
-#define DAQ_CLKOUT_LAST_4_BITS_AND_RETURN_TO_START 0x00001000 //last 4 bit of data in the last frame
+#define DAQ_CLKOUT_LAST_4_BITS_AND_RETURN_TO_START                             \
+    0x00001000 // last 4 bit of data in the last frame
 
 #define DAQ_RELEASE_IMAGE_STORE_AFTER_READOUT  0x00002000
 #define DAQ_RESET_PIXEL_COUNTERS_AFTER_READOUT 0x00004000
@@ -63,52 +64,62 @@
 #define DAQ_CLK_MAIN_CLK_TO_SELECT_NEXT_PIXEL 0x00010000
 #define DAQ_SEND_N_TEST_PULSES                0x00020000
 
-#define DAQ_CHIP_CONTROLLER_HALF_SPEED         0x00040000 //everything at 100 MHz (50MHz ddr readout)
-#define DAQ_CHIP_CONTROLLER_QUARTER_SPEED      0x00080000 //everything at  50 MHz (25MHz ddr readout)
-#define DAQ_CHIP_CONTROLLER_SUPER_SLOW_SPEED   0x000c0000 //everything at  ~200 kHz (200 kHz MHz ddr readout)
+#define DAQ_CHIP_CONTROLLER_HALF_SPEED                                         \
+    0x00040000 // everything at 100 MHz (50MHz ddr readout)
+#define DAQ_CHIP_CONTROLLER_QUARTER_SPEED                                      \
+    0x00080000 // everything at  50 MHz (25MHz ddr readout)
+#define DAQ_CHIP_CONTROLLER_SUPER_SLOW_SPEED                                   \
+    0x000c0000 // everything at  ~200 kHz (200 kHz MHz ddr readout)
 
-//#define DAQ_FIFO_ENABLE                       0x00100000 commented out as it is not used anywhere
+//#define DAQ_FIFO_ENABLE                       0x00100000 commented out as it
+// is not used anywhere
 #define DAQ_REG_CHIP_CMDS_INT_TRIGGER 0x00100000
 
 // direct chip commands to the DAQ_REG_CHIP_CMDS register
-#define DAQ_NEXPOSURERS_SAFEST_MODE_ROW_CLK_BEFORE_MODE 0x00200000 //row clk is before main clk readout sequence
-#define DAQ_NEXPOSURERS_NORMAL_NONPARALLEL_MODE         0x00400000 //expose ->readout ->expose -> ..., with store is always closed
+#define DAQ_NEXPOSURERS_SAFEST_MODE_ROW_CLK_BEFORE_MODE                        \
+    0x00200000 // row clk is before main clk readout sequence
+#define DAQ_NEXPOSURERS_NORMAL_NONPARALLEL_MODE                                \
+    0x00400000 // expose ->readout ->expose -> ..., with store is always closed
 #define DAQ_NEXPOSURERS_PARALLEL_MODE 0x00600000 // parallel acquire/read mode
 
-//DAQ_NEXPOSURERS_READOUT_COMPLETE_IMAGES is old now hard-wired in the firmware that every image comes with a header
-//#define DAQ_NEXPOSURERS_READOUT_COMPLETE_IMAGES    0x00800000 //DAQ_IGNORE_INITIAL_CRAP and DAQ_CLKOUT_LAST_4_BITS_AND_RETURN_TO_START
+// DAQ_NEXPOSURERS_READOUT_COMPLETE_IMAGES is old now hard-wired in the firmware
+// that every image comes with a header #define
+// DAQ_NEXPOSURERS_READOUT_COMPLETE_IMAGES    0x00800000
+////DAQ_IGNORE_INITIAL_CRAP and DAQ_CLKOUT_LAST_4_BITS_AND_RETURN_TO_START
 
 #define DAQ_NEXPOSURERS_EXTERNAL_ENABLING          0x01000000
 #define DAQ_NEXPOSURERS_EXTERNAL_ENABLING_POLARITY 0x02000000
 #define DAQ_NEXPOSURERS_EXTERNAL_TRIGGER_POLARITY  0x04000000
 
 #define DAQ_NEXPOSURERS_INTERNAL_ACQUISITION 0x00000000 // internally controlled
-#define DAQ_NEXPOSURERS_EXTERNAL_ACQUISITION_START    0x08000000 //external acquisition start
+#define DAQ_NEXPOSURERS_EXTERNAL_ACQUISITION_START                             \
+    0x08000000 // external acquisition start
 #define DAQ_NEXPOSURERS_EXTERNAL_IMAGE_START 0x10000000 // external image start
-#define DAQ_NEXPOSURERS_EXTERNAL_IMAGE_START_AND_STOP 0x18000000 //externally controlly, external image start and stop
+#define DAQ_NEXPOSURERS_EXTERNAL_IMAGE_START_AND_STOP                          \
+    0x18000000 // externally controlly, external image start and stop
 
 #define DAQ_NEXPOSURERS_ACTIVATE_AUTO_SUBIMAGING 0x20000000
 #define DAQ_NEXPOSURERS_ACTIVATE_RATE_CORRECTION 0x40000000
 
-//#define DAQ_MASTER_HALF_MODULE                        0x80000000 currently not used
-
+//#define DAQ_MASTER_HALF_MODULE                        0x80000000 currently not
+// used
 
 // chips static bits
 #define DAQ_STATIC_BIT_PROGRAM 0x00000001
 #define DAQ_STATIC_BIT_M4      0x00000002 // these are the status bits, not bit mode
 #define DAQ_STATIC_BIT_M8      0x00000004 // these are the status bits, not bit mode
-#define DAQ_STATIC_BIT_M12          0x00000000 //these are the status bits, not bit mode, ie. "00" is 12 bit mode
+#define DAQ_STATIC_BIT_M12                                                     \
+    0x00000000 // these are the status bits, not bit mode, ie. "00" is 12 bit
+               // mode
 #define DAQ_STATIC_BIT_CHIP_TEST 0x00000008
 #define DAQ_STATIC_BIT_ROTEST    0x00000010
 #define DAQ_CS_BAR_LEFT          0x00000020
 #define DAQ_CS_BAR_RIGHT         0x00000040
 
-
 // status flags
 #define DAQ_STATUS_DAQ_RUNNING   0x01
 #define DAQ_DATA_COLLISION_ERROR 0x02
 
-
 #define DAQ_STATUS_CURRENT_M4         0x04
 #define DAQ_STATUS_CURRENT_M8         0x08
 #define DAQ_STATUS_CURRENT_M12        0x00 // in 12 bit mode both are cleared
@@ -146,7 +157,8 @@
 #define FLOW_REG_OFFSET        0x140
 
 #define FLOW_REG_TXM_FLOW_CNTRL_10G_OFST (0)
-#define FLOW_REG_TXM_FLOW_CNTRL_10G_MSK		(0x1 << FLOW_REG_TXM_FLOW_CNTRL_10G_OFST)
+#define FLOW_REG_TXM_FLOW_CNTRL_10G_MSK                                        \
+    (0x1 << FLOW_REG_TXM_FLOW_CNTRL_10G_OFST)
 #define FLOW_REG_OVERFLOW_32_BIT_OFST (2)
 #define FLOW_REG_OVERFLOW_32_BIT_MSK  (0x1 << FLOW_REG_OVERFLOW_32_BIT_OFST)
 
@@ -210,19 +222,3 @@
 #define UDP_HEADER_Z_MSK   (0xFFFF << UDP_HEADER_Z_OFST)
 #define UDP_HEADER_Y_OFST  (16)
 #define UDP_HEADER_Y_MSK   (0xFFFF << UDP_HEADER_Y_OFST)
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-

slsDetectorServers/eigerDetectorServer/HardwareIO.c

@@ -1,49 +1,42 @@
 #include "HardwareIO.h"
 
-xfs_u8 HWIO_xfs_in8(xfs_u32 InAddress)
-{
+xfs_u8 HWIO_xfs_in8(xfs_u32 InAddress) {
     /* read the contents of the I/O location and then synchronize the I/O
      * such that the I/O operation completes before proceeding on
      */
 
     xfs_u8 IoContents;
-    __asm__ volatile ("eieio; lbz %0,0(%1)":"=r" (IoContents):"b"
-              (InAddress));
+    __asm__ volatile("eieio; lbz %0,0(%1)" : "=r"(IoContents) : "b"(InAddress));
     return IoContents;
 }
 
 /*****************************************************************************/
 
-xfs_u16 HWIO_xfs_in16(xfs_u32 InAddress)
-{
+xfs_u16 HWIO_xfs_in16(xfs_u32 InAddress) {
     /* read the contents of the I/O location and then synchronize the I/O
      * such that the I/O operation completes before proceeding on
      */
 
     xfs_u16 IoContents;
-    __asm__ volatile ("eieio; lhz %0,0(%1)":"=r" (IoContents):"b"
-              (InAddress));
+    __asm__ volatile("eieio; lhz %0,0(%1)" : "=r"(IoContents) : "b"(InAddress));
     return IoContents;
 }
 
 /*****************************************************************************/
 
-xfs_u32 HWIO_xfs_in32(xfs_u32 InAddress)
-{
+xfs_u32 HWIO_xfs_in32(xfs_u32 InAddress) {
     /* read the contents of the I/O location and then synchronize the I/O
      * such that the I/O operation completes before proceeding on
      */
 
     xfs_u32 IoContents;
-    __asm__ volatile ("eieio; lwz %0,0(%1)":"=r" (IoContents):"b"
-              (InAddress));
+    __asm__ volatile("eieio; lwz %0,0(%1)" : "=r"(IoContents) : "b"(InAddress));
     return IoContents;
 }
 
 /*****************************************************************************/
 
-void HWIO_xfs_out8(xfs_u32 OutAddress, xfs_u8 Value)
-{
+void HWIO_xfs_out8(xfs_u32 OutAddress, xfs_u8 Value) {
     /* write the contents of the I/O location and then synchronize the I/O
      * such that the I/O operation completes before proceeding on
      */
@@ -52,8 +45,7 @@ void HWIO_xfs_out8(xfs_u32 OutAddress, xfs_u8 Value)
 }
 
 /*****************************************************************************/
-void HWIO_xfs_out16(xfs_u32 OutAddress, xfs_u16 Value)
-{
+void HWIO_xfs_out16(xfs_u32 OutAddress, xfs_u16 Value) {
     /* write the contents of the I/O location and then synchronize the I/O
      * such that the I/O operation completes before proceeding on
      */
@@ -63,14 +55,10 @@ void HWIO_xfs_out16(xfs_u32 OutAddress, xfs_u16 Value)
 
 /*****************************************************************************/
 
-void HWIO_xfs_out32(xfs_u32 OutAddress, xfs_u32 Value)
-{
+void HWIO_xfs_out32(xfs_u32 OutAddress, xfs_u32 Value) {
     /* write the contents of the I/O location and then synchronize the I/O
      * such that the I/O operation completes before proceeding on
      */
 
     __asm__ volatile("stw %0,0(%1); eieio" ::"r"(Value), "b"(OutAddress));
 }
-
-
-

slsDetectorServers/eigerDetectorServer/HardwareIO.h

@@ -4,8 +4,6 @@
 
 #include "xfs_types.h"
 
-
-
 xfs_u8 HWIO_xfs_in8(xfs_u32 InAddress);
 xfs_u16 HWIO_xfs_in16(xfs_u32 InAddress);
 xfs_u32 HWIO_xfs_in32(xfs_u32 InAddress);
@@ -13,4 +11,3 @@
 void HWIO_xfs_out8(xfs_u32 OutAddress, xfs_u8 Value);
 void HWIO_xfs_out16(xfs_u32 OutAddress, xfs_u16 Value);
 void HWIO_xfs_out32(xfs_u32 OutAddress, xfs_u32 Value);
-

slsDetectorServers/eigerDetectorServer/HardwareMMappingDefs.h

@@ -5,7 +5,6 @@
 #ifndef __PLB_LL_FIFO_H__
 #define __PLB_LL_FIFO_H__
 
-
 /******************************************************************************/
 /* definitions                                                                */
 /******************************************************************************/
@@ -20,7 +19,6 @@
 #define PLB_LL_FIFO_CTRL_LL_SOF       0x10000000
 #define PLB_LL_FIFO_CTRL_LL_MASK      0xF0000000
 
-
 #define PLB_LL_FIFO_CTRL_TX_RESET 0x08000000
 #define PLB_LL_FIFO_CTRL_RX_RESET 0x04000000
 
@@ -38,10 +36,8 @@
 // reset Rx and Tx Fifo and set User Reset
 #define PLB_LL_FIFO_CTRL_RESET_FIFO 0x0C400000
 
-
 #define PLB_LL_FIFO_CTRL_CONFIG_VECTOR 0x000FFFFF
 
-
 #define PLB_LL_FIFO_STATUS_LL_REM_SHIFT 30
 #define PLB_LL_FIFO_STATUS_LL_REM       0xC0000000
 #define PLB_LL_FIFO_STATUS_LL_EOF       0x20000000
@@ -56,7 +52,4 @@
 
 #define PLB_LL_FIFO_ALMOST_FULL_THRESHOLD_WORDS 100
 
-
 #endif // __PLB_LL_FIFO_H__
-
-

slsDetectorServers/eigerDetectorServer/LocalLinkInterface.c

@@ -2,28 +2,28 @@
 #include "HardwareMMappingDefs.h"
 #include "clogger.h"
 
-#include <unistd.h>
-#include <sys/mman.h>
 #include <fcntl.h>
+#include <sys/mman.h>
+#include <unistd.h>
 
-
-void Local_LocalLinkInterface1(struct LocalLinkInterface* ll,unsigned int ll_fifo_badr) {
+void Local_LocalLinkInterface1(struct LocalLinkInterface *ll,
+                               unsigned int ll_fifo_badr) {
     LOG(logDEBUG1, ("Initialize PLB LL FIFOs\n"));
     ll->ll_fifo_base = 0;
     ll->ll_fifo_ctrl_reg = 0;
     if (Local_Init(ll, ll_fifo_badr)) {
         Local_Reset(ll);
-		LOG(logDEBUG1, ("\tFIFO Status : 0x%08x\n\n\n", Local_StatusVector(ll)));
-	} else LOG(logERROR, ("\tCould not map LocalLink : 0x%08x\n\n\n", ll_fifo_badr));
+        LOG(logDEBUG1,
+            ("\tFIFO Status : 0x%08x\n\n\n", Local_StatusVector(ll)));
+    } else
+        LOG(logERROR,
+            ("\tCould not map LocalLink : 0x%08x\n\n\n", ll_fifo_badr));
 }
 
-
 void Local_LocalLinkInterface(struct LocalLinkInterface *ll) {
     LOG(logDEBUG1, ("Initializing new memory\n"));
 }
 
-
-
 int Local_Init(struct LocalLinkInterface *ll, unsigned int ll_fifo_badr) {
     int fd;
     void *plb_ll_fifo_ptr;
@@ -33,7 +33,8 @@ int Local_Init(struct LocalLinkInterface* ll,unsigned int ll_fifo_badr) {
         return 0;
     }
 
-	plb_ll_fifo_ptr =  mmap(0, getpagesize(), PROT_READ | PROT_WRITE, MAP_FILE | MAP_SHARED, fd, ll_fifo_badr);
+    plb_ll_fifo_ptr = mmap(0, getpagesize(), PROT_READ | PROT_WRITE,
+                           MAP_FILE | MAP_SHARED, fd, ll_fifo_badr);
     close(fd);
 
     if (plb_ll_fifo_ptr == MAP_FAILED) {
@@ -47,8 +48,6 @@ int Local_Init(struct LocalLinkInterface* ll,unsigned int ll_fifo_badr) {
     return 1;
 }
 
-
-
 int Local_Reset(struct LocalLinkInterface *ll) {
     return Local_Reset1(ll, PLB_LL_FIFO_CTRL_RESET_STD);
 }
@@ -57,24 +56,28 @@ int Local_Reset1(struct LocalLinkInterface* ll,unsigned int rst_mask) {
     ll->ll_fifo_ctrl_reg |= rst_mask;
     LOG(logDEBUG1, ("\tCTRL Register bits: 0x%08x\n", ll->ll_fifo_ctrl_reg));
 
-	HWIO_xfs_out32(ll->ll_fifo_base+4*PLB_LL_FIFO_REG_CTRL,ll->ll_fifo_ctrl_reg);
-	HWIO_xfs_out32(ll->ll_fifo_base+4*PLB_LL_FIFO_REG_CTRL,ll->ll_fifo_ctrl_reg);
-	HWIO_xfs_out32(ll->ll_fifo_base+4*PLB_LL_FIFO_REG_CTRL,ll->ll_fifo_ctrl_reg);
-	HWIO_xfs_out32(ll->ll_fifo_base+4*PLB_LL_FIFO_REG_CTRL,ll->ll_fifo_ctrl_reg);
+    HWIO_xfs_out32(ll->ll_fifo_base + 4 * PLB_LL_FIFO_REG_CTRL,
+                   ll->ll_fifo_ctrl_reg);
+    HWIO_xfs_out32(ll->ll_fifo_base + 4 * PLB_LL_FIFO_REG_CTRL,
+                   ll->ll_fifo_ctrl_reg);
+    HWIO_xfs_out32(ll->ll_fifo_base + 4 * PLB_LL_FIFO_REG_CTRL,
+                   ll->ll_fifo_ctrl_reg);
+    HWIO_xfs_out32(ll->ll_fifo_base + 4 * PLB_LL_FIFO_REG_CTRL,
+                   ll->ll_fifo_ctrl_reg);
 
     ll->ll_fifo_ctrl_reg &= (~rst_mask);
 
-	HWIO_xfs_out32(ll->ll_fifo_base+4*PLB_LL_FIFO_REG_CTRL,ll->ll_fifo_ctrl_reg);
+    HWIO_xfs_out32(ll->ll_fifo_base + 4 * PLB_LL_FIFO_REG_CTRL,
+                   ll->ll_fifo_ctrl_reg);
     return 1;
 }
 
-
-
 unsigned int Local_StatusVector(struct LocalLinkInterface *ll) {
     return HWIO_xfs_in32(ll->ll_fifo_base + 4 * PLB_LL_FIFO_REG_STATUS);
 }
 
-int Local_Write(struct LocalLinkInterface* ll,unsigned int buffer_len, void *buffer) {
+int Local_Write(struct LocalLinkInterface *ll, unsigned int buffer_len,
+                void *buffer) {
     // note: buffer must be word (4 byte) aligned
     // frame_len in byte
     int vacancy = 0;
@@ -85,48 +88,55 @@ int Local_Write(struct LocalLinkInterface* ll,unsigned int buffer_len, void *buf
     unsigned int fifo_ctrl;
     xfs_u32 status;
 
-	if (buffer_len < 1) return -1;
+    if (buffer_len < 1)
+        return -1;
 
     last_word = (buffer_len - 1) / 4;
     word_ptr = (unsigned int *)buffer;
 
-	LOG(logDEBUG1, ("LL Write - Len: %2d - If: %X - Data: ",buffer_len, ll->ll_fifo_base));
+    LOG(logDEBUG1, ("LL Write - Len: %2d - If: %X - Data: ", buffer_len,
+                    ll->ll_fifo_base));
     for (i = 0; i < buffer_len / 4; i++)
         LOG(logDEBUG1, ("%.8X ", *(((unsigned *)buffer) + i)));
 
-	while (words_send <= last_word)
-	{
+    while (words_send <= last_word) {
         while (!vacancy) // wait for Fifo to be empty again
         {
-			status = HWIO_xfs_in32(ll->ll_fifo_base+4*PLB_LL_FIFO_REG_STATUS);
-			if ((status & PLB_LL_FIFO_STATUS_ALMOSTFULL) == 0) vacancy = 1;
+            status =
+                HWIO_xfs_in32(ll->ll_fifo_base + 4 * PLB_LL_FIFO_REG_STATUS);
+            if ((status & PLB_LL_FIFO_STATUS_ALMOSTFULL) == 0)
+                vacancy = 1;
             if (vacancy == 0) {
                 LOG(logERROR, ("Fifo full!\n"));
             }
         }
 
         // Just to know: #define PLB_LL_FIFO_ALMOST_FULL_THRESHOLD_WORDS    100
-		for (i=0; ((i<PLB_LL_FIFO_ALMOST_FULL_THRESHOLD_WORDS) && (words_send <= last_word)); i++)
-		{
+        for (i = 0; ((i < PLB_LL_FIFO_ALMOST_FULL_THRESHOLD_WORDS) &&
+                     (words_send <= last_word));
+             i++) {
             fifo_ctrl = 0;
-			if (words_send == 0)
-			{
-				fifo_ctrl = PLB_LL_FIFO_CTRL_LL_SOF;//announce the start of file
+            if (words_send == 0) {
+                fifo_ctrl =
+                    PLB_LL_FIFO_CTRL_LL_SOF; // announce the start of file
             }
 
-			if (words_send == last_word)
-			{
-				fifo_ctrl |= (PLB_LL_FIFO_CTRL_LL_EOF | (( (buffer_len-1)<<PLB_LL_FIFO_CTRL_LL_REM_SHIFT) & PLB_LL_FIFO_CTRL_LL_REM)  );
+            if (words_send == last_word) {
+                fifo_ctrl |=
+                    (PLB_LL_FIFO_CTRL_LL_EOF |
+                     (((buffer_len - 1) << PLB_LL_FIFO_CTRL_LL_REM_SHIFT) &
+                      PLB_LL_FIFO_CTRL_LL_REM));
             }
             Local_ctrl_reg_write_mask(ll, PLB_LL_FIFO_CTRL_LL_MASK, fifo_ctrl);
-			HWIO_xfs_out32(ll->ll_fifo_base+4*PLB_LL_FIFO_REG_FIFO,word_ptr[words_send++]);
+            HWIO_xfs_out32(ll->ll_fifo_base + 4 * PLB_LL_FIFO_REG_FIFO,
+                           word_ptr[words_send++]);
         }
     }
     return buffer_len;
 }
 
-
-int Local_Read(struct LocalLinkInterface* ll,unsigned int buffer_len, void *buffer) {
+int Local_Read(struct LocalLinkInterface *ll, unsigned int buffer_len,
+               void *buffer) {
     static unsigned int buffer_ptr = 0;
     // note: buffer must be word (4 byte) aligned
     // frame_len in byte
@@ -139,16 +149,12 @@ int Local_Read(struct LocalLinkInterface* ll,unsigned int buffer_len, void *buff
     LOG(logDEBUG1, ("LL Read - If: %X - Data: ", ll->ll_fifo_base));
 
     word_ptr = (unsigned int *)buffer;
-	do
-	{
+    do {
         status = HWIO_xfs_in32(ll->ll_fifo_base + 4 * PLB_LL_FIFO_REG_STATUS);
 
-		if (!(status & PLB_LL_FIFO_STATUS_EMPTY))
-		{
-			if (status & PLB_LL_FIFO_STATUS_LL_SOF)
-			{
-				if (buffer_ptr)
-				{
+        if (!(status & PLB_LL_FIFO_STATUS_EMPTY)) {
+            if (status & PLB_LL_FIFO_STATUS_LL_SOF) {
+                if (buffer_ptr) {
                     buffer_ptr = 0;
                     return -1; // buffer overflow
                 }
@@ -156,52 +162,49 @@ int Local_Read(struct LocalLinkInterface* ll,unsigned int buffer_len, void *buff
                 sof = 1;
             }
 
-			fifo_val = HWIO_xfs_in32(ll->ll_fifo_base+4*PLB_LL_FIFO_REG_FIFO);  //read from fifo
+            fifo_val = HWIO_xfs_in32(
+                ll->ll_fifo_base + 4 * PLB_LL_FIFO_REG_FIFO); // read from fifo
 
-			if ((buffer_ptr > 0) || sof)
-			{
-				if ( (buffer_len >> 2) > buffer_ptr)
-				{
+            if ((buffer_ptr > 0) || sof) {
+                if ((buffer_len >> 2) > buffer_ptr) {
                     LOG(logDEBUG1, ("%.8X ", fifo_val));
                     word_ptr[buffer_ptr++] = fifo_val; // write to buffer
-				}
-				else
-				{
+                } else {
                     buffer_ptr = 0;
                     return -2; // buffer overflow
                 }
 
-				if (status & PLB_LL_FIFO_STATUS_LL_EOF)
-				{
-					len = (buffer_ptr << 2) -3 + ( (status & PLB_LL_FIFO_STATUS_LL_REM)>>PLB_LL_FIFO_STATUS_LL_REM_SHIFT );
+                if (status & PLB_LL_FIFO_STATUS_LL_EOF) {
+                    len = (buffer_ptr << 2) - 3 +
+                          ((status & PLB_LL_FIFO_STATUS_LL_REM) >>
+                           PLB_LL_FIFO_STATUS_LL_REM_SHIFT);
                     LOG(logDEBUG1, ("Len: %d\n", len));
                     buffer_ptr = 0;
                     return len;
                 }
-
             }
         }
-	}
-	while(!(status & PLB_LL_FIFO_STATUS_EMPTY));
+    } while (!(status & PLB_LL_FIFO_STATUS_EMPTY));
 
     return 0;
 }
 
-int Local_ctrl_reg_write_mask(struct LocalLinkInterface* ll,unsigned int mask, unsigned int val) {
+int Local_ctrl_reg_write_mask(struct LocalLinkInterface *ll, unsigned int mask,
+                              unsigned int val) {
     ll->ll_fifo_ctrl_reg &= (~mask);
     ll->ll_fifo_ctrl_reg |= (mask & val);
-	HWIO_xfs_out32(ll->ll_fifo_base+4*PLB_LL_FIFO_REG_CTRL,ll->ll_fifo_ctrl_reg);
+    HWIO_xfs_out32(ll->ll_fifo_base + 4 * PLB_LL_FIFO_REG_CTRL,
+                   ll->ll_fifo_ctrl_reg);
     return 1;
 }
 
-
-int Local_Test(struct LocalLinkInterface* ll,unsigned int buffer_len, void *buffer) {
+int Local_Test(struct LocalLinkInterface *ll, unsigned int buffer_len,
+               void *buffer) {
 
     int len;
     unsigned int rec_buff_len = 4096;
     unsigned int rec_buffer[4097];
 
-
     Local_Write(ll, buffer_len, buffer);
     usleep(10000);
 
@@ -217,4 +220,3 @@ int Local_Test(struct LocalLinkInterface* ll,unsigned int buffer_len, void *buff
 
     return 1;
 }
-

slsDetectorServers/eigerDetectorServer/LocalLinkInterface.h

@@ -2,7 +2,6 @@
 
 #include "HardwareIO.h"
 
-
 struct LocalLinkInterface {
     xfs_u32 ll_fifo_base;
     unsigned int ll_fifo_ctrl_reg;
@@ -10,12 +9,16 @@ struct LocalLinkInterface{
 
 int Local_Init(struct LocalLinkInterface *ll, unsigned int ll_fifo_badr);
 int Local_Reset1(struct LocalLinkInterface *ll, unsigned int rst_mask);
-int Local_ctrl_reg_write_mask(struct LocalLinkInterface* ll,unsigned int mask, unsigned int val);
-void Local_LocalLinkInterface1(struct LocalLinkInterface* ll,unsigned int ll_fifo_badr);
+int Local_ctrl_reg_write_mask(struct LocalLinkInterface *ll, unsigned int mask,
+                              unsigned int val);
+void Local_LocalLinkInterface1(struct LocalLinkInterface *ll,
+                               unsigned int ll_fifo_badr);
 unsigned int Local_StatusVector(struct LocalLinkInterface *ll);
 int Local_Reset(struct LocalLinkInterface *ll);
-int  Local_Write(struct LocalLinkInterface* ll,unsigned int buffer_len, void *buffer);
-int  Local_Read(struct LocalLinkInterface* ll,unsigned int buffer_len, void *buffer);
-int  Local_Test(struct LocalLinkInterface* ll,unsigned int buffer_len, void *buffer);
+int Local_Write(struct LocalLinkInterface *ll, unsigned int buffer_len,
+                void *buffer);
+int Local_Read(struct LocalLinkInterface *ll, unsigned int buffer_len,
+               void *buffer);
+int Local_Test(struct LocalLinkInterface *ll, unsigned int buffer_len,
+               void *buffer);
 void Local_LocalLinkInterface(struct LocalLinkInterface *ll);
-

slsDetectorServers/eigerDetectorServer/slsDetectorServer_defs.h

@@ -3,14 +3,34 @@
 
 #define REQUIRED_FIRMWARE_VERSION          (24)
 #define IDFILECOMMAND                      "more /home/root/executables/detid.txt"
+#define FIRMWARE_VERSION_SAME_TOP_BOT_ADDR (26)
 
 #define STATUS_IDLE    0
 #define STATUS_RUNNING 1
 #define STATUS_ERROR   2
 
 /* Enums */
-enum DACINDEX					 			{E_SVP,E_VTR,E_VRF,E_VRS,E_SVN,E_VTGSTV,E_VCMP_LL,E_VCMP_LR,E_CAL,E_VCMP_RL,E_RXB_RB,E_RXB_LB,E_VCMP_RR,E_VCP,E_VCN,E_VIS,E_VTHRESHOLD};
-#define DEFAULT_DAC_VALS	 	 			{	\
+enum DACINDEX {
+    E_SVP,
+    E_VTR,
+    E_VRF,
+    E_VRS,
+    E_SVN,
+    E_VTGSTV,
+    E_VCMP_LL,
+    E_VCMP_LR,
+    E_CAL,
+    E_VCMP_RL,
+    E_RXB_RB,
+    E_RXB_LB,
+    E_VCMP_RR,
+    E_VCP,
+    E_VCN,
+    E_VIS,
+    E_VTHRESHOLD
+};
+#define DEFAULT_DAC_VALS                                                       \
+    {                                                                          \
         0,    /* SvP		*/                                                       \
         2480, /* Vtr		*/                                                       \
         3300, /* Vrf		*/                                                       \
@@ -28,7 +48,16 @@ enum DACINDEX					 			{E_SVP,E_VTR,E_VRF,E_VRS,E_SVN,E_VTGSTV,E_VCMP_LL,E_VCMP_L
         2000, /* Vcn		*/                                                       \
         1550  /* Vis		*/                                                       \
     };
-enum ADCINDEX						 		{TEMP_FPGAEXT, TEMP_10GE, TEMP_DCDC, TEMP_SODL, TEMP_SODR, TEMP_FPGA, TEMP_FPGAFEBL, TEMP_FPGAFEBR};
+enum ADCINDEX {
+    TEMP_FPGAEXT,
+    TEMP_10GE,
+    TEMP_DCDC,
+    TEMP_SODL,
+    TEMP_SODR,
+    TEMP_FPGA,
+    TEMP_FPGAFEBL,
+    TEMP_FPGAFEBR
+};
 enum NETWORKINDEX { TXN_LEFT, TXN_RIGHT, TXN_FRAME, FLOWCTRL_10G };
 enum ROINDEX { E_PARALLEL, E_NON_PARALLEL };
 enum CLKINDEX { RUN_CLK, NUM_CLOCKS };
@@ -39,13 +68,13 @@ enum CLKINDEX                      			{RUN_CLK, NUM_CLOCKS};
 #define NCHIP (4)
 #define NDAC  (16)
 
-
 #define TEN_GIGA_BUFFER_SIZE         (4112)
 #define ONE_GIGA_BUFFER_SIZE         (1040)
 #define TEN_GIGA_CONSTANT            (4)
 #define ONE_GIGA_CONSTANT            (16)
 #define NORMAL_HIGHVOLTAGE_INPUTPORT "/sys/class/hwmon/hwmon5/device/in0_input"
-#define NORMAL_HIGHVOLTAGE_OUTPUTPORT 		"/sys/class/hwmon/hwmon5/device/out0_output"
+#define NORMAL_HIGHVOLTAGE_OUTPUTPORT                                          \
+    "/sys/class/hwmon/hwmon5/device/out0_output"
 #define SPECIAL9M_HIGHVOLTAGE_PORT       "/dev/ttyS1"
 #define SPECIAL9M_HIGHVOLTAGE_BUFFERSIZE (16)
 #define DEFAULT_UDP_SOURCE_PORT          (0xE185)
@@ -63,10 +92,10 @@ enum CLKINDEX                      			{RUN_CLK, NUM_CLOCKS};
 #define DEFAULT_SUBFRAME_DEADTIME     (0)
 #define DEFAULT_DYNAMIC_RANGE         (16)
 
-#define DEFAULT_PARALLEL_MODE				(0)
+#define DEFAULT_PARALLEL_MODE           (1)
 #define DEFAULT_READOUT_STOREINRAM_MODE (0)
 #define DEFAULT_READOUT_OVERFLOW32_MODE (0)
-#define DEFAULT_CLK_SPEED					(HALF_SPEED)
+#define DEFAULT_CLK_SPEED               (FULL_SPEED)
 #define DEFAULT_IO_DELAY                (650)
 #define DEFAULT_TIMING_MODE             (AUTO_TIMING)
 #define DEFAULT_PHOTON_ENERGY           (-1)
@@ -85,12 +114,14 @@ enum CLKINDEX                      			{RUN_CLK, NUM_CLOCKS};
 
 #define DAC_MIN_MV (0)
 #define DAC_MAX_MV (2048)
-#define LTC2620_MIN_VAL                     (0)     // including LTC defines instead of LTC262.h (includes bit banging and blackfin read and write)
+#define LTC2620_MIN_VAL                                                        \
+    (0) // including LTC defines instead of LTC262.h (includes bit banging and
+        // blackfin read and write)
 #define LTC2620_MAX_VAL (4095) // 12 bits
 #define DAC_MAX_STEPS   (4096)
 
-#define MAX_SUBFRAME_EXPOSURE_VAL_IN_10NS	(0x1FFFFFFF) /** 29 bit register for max subframe exposure value */
+#define MAX_SUBFRAME_EXPOSURE_VAL_IN_10NS                                      \
+    (0x1FFFFFFF) /** 29 bit register for max subframe exposure value */
 
 #define SLAVE_HIGH_VOLTAGE_READ_VAL (-999)
 #define HIGH_VOLTAGE_TOLERANCE      (5)
-

slsDetectorServers/eigerDetectorServer/xfs_types.h

@@ -14,10 +14,8 @@ typedef signed int xfs_i32;
 typedef signed short xfs_i16;
 typedef signed char xfs_i8;
 
-
 // UDP Header
-struct udp_header_type
-{
+struct udp_header_type {
     // ethternet frame  (14 byte)
     uint8_t dst_mac[6];
     uint8_t src_mac[6];
@@ -41,8 +39,4 @@ struct udp_header_type
     uint8_t dst_port[2];
     uint8_t udp_message_len[2];
     uint8_t udp_checksum[2];
-
 };
-
-
-