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ToString
==============
String conversion
.. doxygenfile:: ToString.h

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Binary File Format
====================
This is the default file format that can be configured using command `fformat <commandline.html#term-fformat-binary-hdf5>`_.
.. code-block:: bash
sls_detector_put fformat binary
Master File
--------------
* File Name: [fpath]/[fname]_master_[findex].json :ref:`Details here<file name format>`
* It is in json format and created for every acquisition.
* It contains :ref:`attributes<master file attributes>` relevant to the acquisition. This can vary with detector type shown in :ref:`master json file examples <json master file examples>` here.
* It shows the :ref:`**SLS Receiver Header** <sls receiver header format>` format used in data files.
* Enabled/disabled using command `fmaster <commandline.html#term-fmaster-0-1>`_.
Data File
----------
* File Name: [fpath]/[fname]_dx_fy_[findex].raw :ref:`Details here<file name format>`
* It store multiple frames sequentially, with total number of frames determined by `rx_framesperfile <commandline.html#term-rx_framesperfile-n_frames>`_ parameter.
* Each frame includes a :ref:`**sls_receiver_header** <sls receiver header format>` structure, followed by the actual frame data.
.. _json master file examples:
JSON Master File Examples
---------------------------------------------------
Eiger
^^^^^
.. code-block:: text
{
"Version": 7.2,
"Timestamp": "Wed Nov 13 15:46:30 2024",
"Detector Type": "Eiger",
"Timing Mode": "auto",
"Geometry": {
"x": 2,
"y": 1
},
"Image Size in bytes": 262144,
"Pixels": {
"x": 512,
"y": 256
},
"Max Frames Per File": 10000,
"Frame Discard Policy": "nodiscard",
"Frame Padding": 1,
"Scan Parameters": "[disabled]",
"Total Frames": 1,
"Receiver Roi": {
"xmin": 4294967295,
"xmax": 4294967295,
"ymin": 4294967295,
"ymax": 4294967295
},
"Dynamic Range": 16,
"Ten Giga": 0,
"Exptime": "1s",
"Period": "1s",
"Threshold Energy": -1,
"Sub Exptime": "2.62144ms",
"Sub Period": "2.62144ms",
"Quad": 0,
"Number of rows": 256,
"Rate Corrections": "[0]",
"Frames in File": 1,
"Frame Header Format": {
"Frame Number": "8 bytes",
"SubFrame Number/ExpLength": "4 bytes",
"Packet Number": "4 bytes",
"Bunch ID": "8 bytes",
"Timestamp": "8 bytes",
"Module Id": "2 bytes",
"Row": "2 bytes",
"Column": "2 bytes",
"Reserved": "2 bytes",
"Debug": "4 bytes",
"Round Robin Number": "2 bytes",
"Detector Type": "1 byte",
"Header Version": "1 byte",
"Packets Caught Mask": "64 bytes"
}
}
Jungfrau
^^^^^^^^
.. code-block:: text
{
"Version": 7.2,
"Timestamp": "Wed Nov 13 13:03:53 2024",
"Detector Type": "Jungfrau",
"Timing Mode": "auto",
"Geometry": {
"x": 1,
"y": 1
},
"Image Size in bytes": 1048576,
"Pixels": {
"x": 1024,
"y": 512
},
"Max Frames Per File": 10000,
"Frame Discard Policy": "nodiscard",
"Frame Padding": 1,
"Scan Parameters": "[disabled]",
"Total Frames": 1000,
"Receiver Roi": {
"xmin": 4294967295,
"xmax": 4294967295,
"ymin": 4294967295,
"ymax": 4294967295
},
"Exptime": "10us",
"Period": "2ms",
"Number of UDP Interfaces": 1,
"Number of rows": 512,
"Frames in File": 10,
"Frame Header Format": {
"Frame Number": "8 bytes",
"SubFrame Number/ExpLength": "4 bytes",
"Packet Number": "4 bytes",
"Bunch ID": "8 bytes",
"Timestamp": "8 bytes",
"Module Id": "2 bytes",
"Row": "2 bytes",
"Column": "2 bytes",
"Reserved": "2 bytes",
"Debug": "4 bytes",
"Round Robin Number": "2 bytes",
"Detector Type": "1 byte",
"Header Version": "1 byte",
"Packets Caught Mask": "64 bytes"
}
}
Gotthard2
^^^^^^^^^^^^
.. code-block:: text
{
"Version": 7.2,
"Timestamp": "Wed Nov 13 14:18:17 2024",
"Detector Type": "Gotthard2",
"Timing Mode": "auto",
"Geometry": {
"x": 1,
"y": 1
},
"Image Size in bytes": 2560,
"Pixels": {
"x": 1280,
"y": 1
},
"Max Frames Per File": 20000,
"Frame Discard Policy": "nodiscard",
"Frame Padding": 1,
"Scan Parameters": "[disabled]",
"Total Frames": 10,
"Receiver Roi": {
"xmin": 4294967295,
"xmax": 4294967295,
"ymin": 4294967295,
"ymax": 4294967295
},
"Exptime": "0ns",
"Period": "0ns",
"Burst Mode": "burst_internal",
"Frames in File": 10,
"Frame Header Format": {
"Frame Number": "8 bytes",
"SubFrame Number/ExpLength": "4 bytes",
"Packet Number": "4 bytes",
"Bunch ID": "8 bytes",
"Timestamp": "8 bytes",
"Module Id": "2 bytes",
"Row": "2 bytes",
"Column": "2 bytes",
"Reserved": "2 bytes",
"Debug": "4 bytes",
"Round Robin Number": "2 bytes",
"Detector Type": "1 byte",
"Header Version": "1 byte",
"Packets Caught Mask": "64 bytes"
}
}
Mythen3
^^^^^^^
.. code-block:: text
{
"Version": 7.2,
"Timestamp": "Wed Nov 13 14:39:14 2024",
"Detector Type": "Mythen3",
"Timing Mode": "auto",
"Geometry": {
"x": 1,
"y": 1
},
"Image Size in bytes": 15360,
"Pixels": {
"x": 3840,
"y": 1
},
"Max Frames Per File": 10000,
"Frame Discard Policy": "nodiscard",
"Frame Padding": 1,
"Scan Parameters": "[disabled]",
"Total Frames": 1,
"Receiver Roi": {
"xmin": 4294967295,
"xmax": 4294967295,
"ymin": 4294967295,
"ymax": 4294967295
},
"Dynamic Range": 32,
"Ten Giga": 1,
"Period": "2ms",
"Counter Mask": "0x7",
"Exptime1": "0.1s",
"Exptime2": "0.1s",
"Exptime3": "0.1s",
"GateDelay1": "0ns",
"GateDelay2": "0ns",
"GateDelay3": "0ns",
"Gates": 1,
"Threshold Energies": "[-1, -1, -1]",
"Frames in File": 1,
"Frame Header Format": {
"Frame Number": "8 bytes",
"SubFrame Number/ExpLength": "4 bytes",
"Packet Number": "4 bytes",
"Bunch ID": "8 bytes",
"Timestamp": "8 bytes",
"Module Id": "2 bytes",
"Row": "2 bytes",
"Column": "2 bytes",
"Reserved": "2 bytes",
"Debug": "4 bytes",
"Round Robin Number": "2 bytes",
"Detector Type": "1 byte",
"Header Version": "1 byte",
"Packets Caught Mask": "64 bytes"
}
}
Moench
^^^^^^
.. code-block:: text
{
"Version": 7.2,
"Timestamp": "Wed Nov 13 14:41:32 2024",
"Detector Type": "Moench",
"Timing Mode": "auto",
"Geometry": {
"x": 1,
"y": 1
},
"Image Size in bytes": 320000,
"Pixels": {
"x": 400,
"y": 400
},
"Max Frames Per File": 100000,
"Frame Discard Policy": "discardpartial",
"Frame Padding": 1,
"Scan Parameters": "[disabled]",
"Total Frames": 1,
"Receiver Roi": {
"xmin": 4294967295,
"xmax": 4294967295,
"ymin": 4294967295,
"ymax": 4294967295
},
"Exptime": "10us",
"Period": "2ms",
"Number of UDP Interfaces": 1,
"Number of rows": 400,
"Frames in File": 1,
"Frame Header Format": {
"Frame Number": "8 bytes",
"SubFrame Number/ExpLength": "4 bytes",
"Packet Number": "4 bytes",
"Bunch ID": "8 bytes",
"Timestamp": "8 bytes",
"Module Id": "2 bytes",
"Row": "2 bytes",
"Column": "2 bytes",
"Reserved": "2 bytes",
"Debug": "4 bytes",
"Round Robin Number": "2 bytes",
"Detector Type": "1 byte",
"Header Version": "1 byte",
"Packets Caught Mask": "64 bytes"
}
}
Gotthard I
^^^^^^^^^^^
.. code-block:: text
{
"Version": 7.2,
"Timestamp": "Wed Nov 13 15:16:19 2024",
"Detector Type": "Gotthard",
"Timing Mode": "auto",
"Geometry": {
"x": 1,
"y": 1
},
"Image Size in bytes": 2560,
"Pixels": {
"x": 1280,
"y": 1
},
"Max Frames Per File": 20000,
"Frame Discard Policy": "nodiscard",
"Frame Padding": 1,
"Scan Parameters": "[disabled]",
"Total Frames": 1,
"Receiver Roi": {
"xmin": 4294967295,
"xmax": 4294967295,
"ymin": 4294967295,
"ymax": 4294967295
},
"Exptime": "1.00001ms",
"Period": "1s",
"Detector Roi": {
"xmin": 4294967295,
"xmax": 4294967295
},
"Frames in File": 1,
"Frame Header Format": {
"Frame Number": "8 bytes",
"SubFrame Number/ExpLength": "4 bytes",
"Packet Number": "4 bytes",
"Bunch ID": "8 bytes",
"Timestamp": "8 bytes",
"Module Id": "2 bytes",
"Row": "2 bytes",
"Column": "2 bytes",
"Reserved": "2 bytes",
"Debug": "4 bytes",
"Round Robin Number": "2 bytes",
"Detector Type": "1 byte",
"Header Version": "1 byte",
"Packets Caught Mask": "64 bytes"
}
}
Chip Test Board
^^^^^^^^^^^^^^^
.. code-block:: text
{
"Version": 7.2,
"Timestamp": "Wed Nov 13 15:32:59 2024",
"Detector Type": "ChipTestBoard",
"Timing Mode": "auto",
"Geometry": {
"x": 1,
"y": 1
},
"Image Size in bytes": 48018,
"Pixels": {
"x": 3,
"y": 1
},
"Max Frames Per File": 20000,
"Frame Discard Policy": "nodiscard",
"Frame Padding": 1,
"Scan Parameters": "[disabled]",
"Total Frames": 1,
"Receiver Roi": {
"xmin": 4294967295,
"xmax": 4294967295,
"ymin": 4294967295,
"ymax": 4294967295
},
"Exptime": "0ns",
"Period": "0.18s",
"Ten Giga": 0,
"ADC Mask": "0x2202",
"Analog Flag": 1,
"Analog Samples": 8003,
"Digital Flag": 0,
"Digital Samples": 1000,
"Dbit Offset": 0,
"Dbit Bitset": 0,
"Transceiver Mask": "0x3",
"Transceiver Flag": 0,
"Transceiver Samples": 1,
"Frames in File": 1,
"Frame Header Format": {
"Frame Number": "8 bytes",
"SubFrame Number/ExpLength": "4 bytes",
"Packet Number": "4 bytes",
"Bunch ID": "8 bytes",
"Timestamp": "8 bytes",
"Module Id": "2 bytes",
"Row": "2 bytes",
"Column": "2 bytes",
"Reserved": "2 bytes",
"Debug": "4 bytes",
"Round Robin Number": "2 bytes",
"Detector Type": "1 byte",
"Header Version": "1 byte",
"Packets Caught Mask": "64 bytes"
}
}

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Command line interface
==============================================
Usage
-------------
The syntax is *'[detector index]-[module index]:[command]'*, where the indices are by default '0', when not specified.
Module index
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Modules are indexed based on their order in the hostname command. They are used to configure a specific module within a detector and are followed by a ':' in syntax.
.. code-block::
# Applies to all modules of detector 0
sls_detector_put exptime 5s
# Applies to only the 4th module
sls_detector_put 3:exptime 5s
Detector index
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
This index is useful when configuring multiple detectors from a single host. Each detector uses a unique shared memory identified by a detector index, derived again from the hostname command. It is followed by a '-'.
.. code-block::
# For detector with index 2 in shared memory
sls_detector_put 2-hostname bchip133+bchip123+bchip456
# Without '-', the detector index defaults to 0
sls_detector_put hostname bchip133+bchip123+bchip456
# Accessing all modules with detector index 2
sls_detector_put 2-exptime
# Starting acquisition only for detector with index 2
sls_detector_put 2-start
# Applies only to the 2nd detector, 4th module
sls_detector_put 1-3:exptime 5s
Command Execution
^^^^^^^^^^^^^^^^^^^^^^^
Commands can be executed using:
* **sls_detector_put**: setting values
* **sls_detector_get**: getting values
* **sls_detector**: automatically infers based on the number of arguments.
* **sls_detector_help**: gets help on the specific command
* **sls_detector_acquire**: initiates acquisition with the detector. This command blocks until the entire acquisition process is completed.
Help
--------
.. code-block::
# get list of commands
sls_detector_get list
# search for a particular command using a word
sls_detector_get list | grep adc
# get help for a particular command
sls_detector_get -h fpath
sls_detector_help fpath
# list of deprecated commands
list deprecated
Autocompletion
---------------
bash_autocomplete.sh or zsh_autocomplete.sh must be sourced from the main package folder to enable auto completion of commands and arguments for the command line on that shell.
.. code-block::
source bash_autocomplete.sh
Commands
-----------
.. include:: ../commands.rst
Deprecated commands
------------------------
.. note ::
All the dac commands are preceded with the **dac** command. Use command **daclist** to get correct list of dac command arguments for current detector.
.. csv-table:: Deprecated commands
:file: ../deprecated.csv
:widths: 35, 35
:header-rows: 1

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Consuming slsDetectorPackage
===============================
Depending on how you want to build your integration with
slsDetectorPackage there are a few different ways to
consume our package. The recommended way is to use one of the
CMake approaches.
One can test with :ref:`detector simulators<Virtual Detector Servers>` before testing the API with a real detector or when a real detector is not at hand.
CMake: slsDetectorPackage as submodule in your project
---------------------------------------------------------------
If you are using CMake to build your integration and want to build everything
in one go, we support adding slsDetectorPackage as a subfolder in your cmake project.
A minimal CMakeLists.txt could look like this:
.. code-block:: cmake
project(myDetectorIntegration)
cmake_minimum_required(VERSION 3.14)
add_subdirectory(slsDetectorPackage)
#Add your executable
add_executable(example main.cpp)
target_compile_features(example PRIVATE cxx_std_11)
#Link towards slsDetectorShared
target_link_libraries(example slsDetectorShared)
A fully working example can be found at:
https://github.com/slsdetectorgroup/cmake-subfolder-example
CMake: find_package(slsDetectorPackage)
------------------------------------------
If you have compiled and installed slsDetectorPackage we also support
find_package in CMake. If installed in a system wide location no path
should be needed, otherwise specify cmake prefix path.
.. code-block:: cmake
cmake_minimum_required(VERSION 3.14)
project(myintegration)
find_package(slsDetectorPackage 5.0 REQUIRED)
add_executable(example main.cpp)
target_link_libraries(example slsDetectorShared)
Then assuming the slsDetectorPackage is installed in /path/to/sls/install
you should be able to configure and build your project in this way.
.. code-block:: bash
cmake ../path/to/your/source -DCMAKE_PREFIX_PATH=/path/to/sls/install
make
A minimal example is available at: https://github.com/slsdetectorgroup/minimal-cmake
CMake: find_package and conda
----------------------------------
.. note::
conda can also be used for installing dependencies such as zmq, Qt4 etc.
find_package(slsDetectorPackage) also works if you have installed slsDetectorPackage using conda.
The only difference is that you point CMake to $CONDA_PREFIX
.. code-block:: bash
#assuming myenv contains slsdetlib
conda activate myenv
cmake ../path/to/your/source -DCMAKE_PREFIX_PATH=$CONDA_PREFIX
make
Depending on your system compiler you might also have to install gxx_linux-64 to compiled.
No tools minimal approach
-----------------------------
While not recommended it is still possible to specify the include and library paths
manually when invoking g++. This can sometimes be handy for a quick try.
.. code-block:: cpp
#include "sls/Detector.h"
#include <iostream>
int main(){
sls::Detector det;
//Get all values and print them
std::cout << "Hostname: " << det.getHostname() << "\n";
std::cout << "Type: " << det.getDetectorType() << "\n";
std::cout << "Udp ip: " << det.getSourceUDPIP() << "\n";
//Get mac addr
const int module = 0;
auto mac = det.getSourceUDPMAC()[module];
std::cout << "Mac addr of module "<< module << " is " << mac.str() << '\n';
}
.. code-block:: bash
g++ -I/install/path/include/ -L/install/path/lib64/ myapp.cpp -lSlsDetector -lSlsSupport -Wl,-rpath=../install/path/lib64

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ContainerUtils
==================
Helper functions to handle standard container compliant
containers. Supports array, vector, sls::Result etc.
While not a part of the public API we aim not to change this
interface too much. However, we don't give the same strong
guarantees as for Detector etc.
Any reoccurring container operation should probably be added to
this file.
.. doxygenfile:: container_utils.h

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Dependencies
=========================
While we value few dependencies some libraries are required in
order to not have to reinvent the wheel. Due to the state of package
management in C++ we decided to bundle some of them with our source
code. These are found in the libs/ directory.
-----------------------
Core
-----------------------
To use the basic building blocks, meaning sls_detector_get/put and
the shared libraries these are needed:
* Linux, preferably recent kernel (currently no cross platform support)
* CMake >= 3.14
* C++11 compatible compiler. (We test with gcc and clang)
-----------------------
Python bindings
-----------------------
* Python >= 3.8
* pybind11 2.13.6 (packaged in libs)
.. note ::
Refer :ref:`pybind11 notes. <pybind for different slsDetectorPackage versions>`
-----------------------
ZeroMQ
-----------------------
* Zeromq 4.3.4 (packaged in libs)
.. note ::
Refer :ref:`zeromq notes. <zeromq for different slsDetectorPackage versions>`
-----------------------
GUI
-----------------------
* Qt 5.9
* Qwt 6.1.5 (packaged in libs)
-----------------------
Moench executables
-----------------------
* libtiff
-----------------------
Documentation
-----------------------
The documentation that you are reading now is built with
* Doxygen (to extract C++ classes etc.)
* Breathe (Sphinx plugin to handle doxygen xml)
* Sphinx with sphinx_rtd_theme
-----------------------
Packaged in libs/
-----------------------
* catch2 (unit testing)
* rapidjson (streaming from receiver)
* pybind11 (python bindings)
* qwt (gui plotting)
* libzmq (streaming to/from receiver)

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Detector
==============================================
The sls::Detector is the public API to control
detectors from C++. This API is also used internally
for the Python bindings and the command line interface.
If a receiver has been configured, this is also controlled
through this class.
Most, if not all, functions are called in parallel
and the return value is a thin std::vector wrapper
containing results from all modules. (:ref:`Result class<Result Class>`)
Here are some :ref:`examples <Cplusplus Api Examples>` on how to use the API.
.. doxygenclass:: sls::Detector
:members:
:undoc-members:

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.. _Cplusplus Api Examples:
Examples
===========
Setup
------------
The examples here assume that you have compiled and installed slsDetectorPackage
to ~/sls/install and that the option for SLS_USE_SIMULATOR was enabled. This also builds
the virtual detector servers that we will be using for testing.
We also add ~/sls/detector/install/bin to the path for convenience.
Compile examples
-------------------
The source code of the examples is available at:
https://github.com/slsdetectorgroup/api-examples
.. code-block:: bash
git clone https://github.com/slsdetectorgroup/api-examples.git
mkdir build && cd build
cmake ../api-examples -DCMAKE_PREFIX_PATH=~/sls/detector/install
make
Below follows a short description of what is included in the examples.
Running a config file [e1]
-----------------------------
.. code-block:: cpp
#include "sls/Detector.h"
...
sls::Detector det;
det.loadConfig("path/to/config/file.config");
To configure the connection between PC and detector the easiest
is to run a config file. For this example we first launch a virtual Jungfrau server and
then set up the detector.
**Launch a virtual detector server**
.. code-block:: bash
jungfrauDetectorServer_virtual
This launches a virtual Jungfrau detector server. As default it uses port 1952 and 1953
for communication over TCP. Most commands go on 1952 and only a few such as stop and status on 1953.
**Run example to configure**
.. code-block:: bash
./e1-config one_det_no_receiver.config
- 12:01:06.371 INFO: Shared memory deleted /slsDetectorPackage_multi_0_sls_0
- 12:01:06.371 INFO: Shared memory deleted /slsDetectorPackage_multi_0
- 12:01:06.372 INFO: Shared memory created /slsDetectorPackage_multi_0
- 12:01:06.376 INFO: Loading configuration file: one_det_no_receiver.config
- 12:01:06.376 INFO: Adding detector localhost
- 12:01:06.377 INFO: Shared memory created /slsDetectorPackage_multi_0_sls_0
- 12:01:06.377 INFO: Checking Detector Version Compatibility
- 12:01:06.378 INFO: Detector connecting - updating!
hostname [localhost]
Jungfrau detector with 1 modules configured
Using the return type sls::Result [e2]
-----------------------------------------
Since many our detectors have multiple modules we cannot return
a single value when reading from the Detector. Hostname, Ip and also
for example exposure time can differ between modules.
Therefore we return Result<T> which is a thin wrapper around
std::vector.
.. code-block:: cpp
sls::Result<int> res1{1, 1, 1};
std::cout << "res1: " << res1 << '\n';
res1.squash();
# return -1 if different
res1.squash(-1);
# throw exception with custom message if different
res1.tsquash("Values are different);
Setting exposure time [e3]
-----------------------------------------
For setting times, like exposure time, period, delay etc.
we use std::chrono::duration.
Example 3 shows how to set and read exposure time as well
as converting to floating point.
.. code-block:: cpp
#include "sls/Detector.h"
#include <chrono>
...
std::chrono::microseconds t0{500};
det.setExptime(t0);

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File format
================================
If `fwrite <commandline.html#term-fwrite-0-1>`_ is enabled, the receiver will write data to files.
Number of Files
----------------
Every acquisition will create a master file and data files.
An acquisition can have multiple data files for a single frame. The number of files is determined by the number of UDP ports per module and the number of modules.
* Every modules has its own receiver process. Every receiver process can have 1 or 2 UDP ports.
* Each UDP port will create its own file. Therefore, each receiver can write 1 or 2 files.
* So, for example a detector with 4 modules with 2 UDP ports each will create a total of 8 files with file names containing UDP port index **'_d0'** to **'_d7'**.
A new file containing **'_f[file_index]'** in file name is also created when reaching the maximum frames per file. Configured using `rx_framesperfile <commandline.html#term-rx_framesperfile-n_frames>`_.
.. _file name format:
Naming
-------
| Master File Name: [fpath]/[fname]_master_[findex].[ext]
| Data File Name: [fpath]/[fname]_dx_fy_[findex].[ext]
* fpath: file path set using command `fpath <commandline.html#term-fpath-path>`_. Default: '/'
* fname: file name prefix using command `fname <commandline.html#term-fname-name>`_. Default: "run"
* findex: acquisition index using command `findex <commandline.html#term-findex-n_value>`_. Automatically incremented for every acquisition with `sls_detector_acquire <commandline.html#term-acquire>`_ (if `fwrite <commandline.html#term-fwrite-0-1>`_ enabled).
* x: unique udp port index. New file per UDP port.
* y: file index. New file created after reaching max frames per file.
* ext: file extension. Default: "raw"(data file) or "json"(master file)
Some file name examples:
.. code-block:: bash
# first file
path-to-file/run_d0_f0_0.raw
# first file for second UDP port
path-to-file/run_d1_f0_0.raw
# second file after reaching max frames in first file
path-to-file/run_d0_f1_0.raw
# second acquisition, first file
path-to-file/run_d0_f0_1.raw
Formats
--------
There are 2 file formats supported by the receiver:
* Binary - extension .json (master file) or .raw (data files)
* HDF5 - extension .h5
The default is binary. HDF5 can be enabled by compiling the package with HDF5 option enabled. The file format is set using the command `fformat <commandline.html#term-fformat-binary-hdf5>`_.

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Firmware Upgrade
=================
Eiger
-------------
Download
^^^^^^^^^^^^^
- `bcp script <https://github.com/slsdetectorgroup/slsDetectorFirmware/blob/master/binaries/eiger/bcp>`__
- detector server corresponding to package in slsDetectorPackage/serverBin
- `bit files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
Upgrade
^^^^^^^^
#. Tftp must be already installed on your pc to use the bcp script.
#. Copy new servers to the board. See :ref:`how to upgrade detector servers<Detector Server Upgrade>` for more detals. A reboot should have started the new linked servers automatically. For Eiger, do not reboot yet as we need to program the firmware via bit files.
* This step is crucial when registers between firmwares change. Failure to do so will result in linux on boards to crash and boards can't be pinged anymore.
#. Bring the board into programmable mode using either of the 2 ways. Both methods result in only the central LED blinking.
* **Manual:**
Do a hard reset for each half module on back panel boards, between the LEDs, closer to each of the 1G ethernet connectors. Push until all LEDs start to blink.
* Software:
.. code-block:: bash
# Option 1: if the old server is still running:
sls_detector_put execcommand "./boot_recovery"
# Option 2:
ssh root@bebxxx
cd executables
./boot_recovery
#. Start a terminal for each half module and run the following to see progress.
.. code-block:: bash
nc -p 3000 -u bebxxx 3000
# Press enter twice to see prompt with board name.
> bebxxx
# After each bcp command, wait for this terminal to print "Success".
#. In another terminal, run the following to update firmware. Please update bit files with great caution as it could make your board inaccessible, if done incorrectly.
.. code-block:: bash
#update back end fpga
bcp download.bit bebxxx:/fw0
#update front left fpga
bcp download.bit bebxxx:/febl
#update front right fpga
bcp download.bit bebxxx:/febr
#update kernel (only if required by us)
bcp download.bit bebxxx:/kernel
#. Reboot the detector.
.. code-block:: bash
# In the first terminal where we saw "Succeess"
# reconfig febX is necessary only if you have flashed a new feb firmware
reconfig febl
reconfig febr
# will reboot controller
reconfig fw0
.. note ::
If the detector servers did not start up automatically after reboot, you need to add scripts to do that. See :ref:`Automatic start<Automatic start servers>` for more details.
Jungfrau
-------------
Download
^^^^^^^^^^^^^
- detector server corresponding to package in slsDetectorPackage/serverBin
- `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
Upgrade
^^^^^^^^
.. warning ::
In case you have had issues in the past with programming via software:
* 6.1.2 server has a fix for seamless fpga programming
* We recommend first updating the on-board detector server to 6.1.2 (with client 6.1.x) using command `updatedetectorserver <commandline.html#term-updatedetectorserver-server_name-with-full-path>`_.
* Then use command 'programfpga' to only update firmware or use command 'update' to update firmware and server to the latest release.
Check :ref:`firmware troubleshooting <blackfin firmware troubleshooting>` if you run into issues while programming firmware.
Program from console
.. code-block:: bash
# These instructions are for upgrades from v5.0.0. For earlier versions, please contact us.
# Always ensure that the client and server software are of the same release.
# copies server, links new server to jungfrauDetectorServer,
# removes old server from respawn, sets up new lnked server to respawn
# programs fpga, reboots
# older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
sls_detector_put update jungfrauDetectorServervxxx pcxxx xx.pof
# v6.1.1 - present (copies server from the full path provided)
sls_detector_put update jungfrauDetectorServervxxx xx.pof
# Or only program firmware
sls_detector_put programfpga xxx.pof
Gotthard I
-----------
Download
^^^^^^^^^^^^^
- detector server corresponding to package in slsDetectorPackage/serverBin
- `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
.. _firmware upgrade using blaster for blackfin:
Upgrade
^^^^^^^^
.. warning ::
| Gotthard firmware cannot be upgraded remotely and requires the use of USB-Blaster.
| It is generally updated by us.
#. Download `Altera Quartus software or Quartus programmer <https://fpgasoftware.intel.com/20.1/?edition=standard&platform=linux&product=qprogrammer#tabs-4>`__.
#. Start Quartus programmer, click on Hardware Setup. In the "Currently selected hardware" window, select USB-Blaster.
#. In the Mode combo box, select "Active Serial Programming".
#. Plug the end of your USB-Blaster with the adaptor provided to the connector 'AS config' on the Gotthard board.
#. Click on 'Add file'. Select programming (pof) file provided by us.
#. Check "Program/Configure" and "Verify". Push the start button. Wait until the programming process is finished.
#. In case of error messages, check the polarity of cable (that pin1 corresponds) and that the correct programming connector is selected.
#. Reboot the detector.
Mythen III
-----------
Download
^^^^^^^^^^^^^
- detector server corresponding to package in slsDetectorPackage/serverBin
- `rbf files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
Upgrade
^^^^^^^^
Program from console
.. code-block:: bash
# Always ensure that the client and server software are of the same release.
# copies server, links new server to mythen3DetectorServer,
# removes old server from respawn, sets up new lnked server to respawn
# programs fpga, reboots
# older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
sls_detector_put update mythen3DetectorServervxxx pcxxx xxx.rbf
# v6.1.1 - present (copies server from the full path provided)
sls_detector_put update mythen3DetectorServervxxx xxx.rbf
# Or only program firmware
sls_detector_put programfpga xxx.rbf
.. note ::
If the detector servers did not start up automatically after reboot, you need to add scripts to do that. See :ref:`Automatic start<Automatic start servers>` for more details.
Gotthard II
-------------
Download
^^^^^^^^^^^^^
- detector server corresponding to package in slsDetectorPackage/serverBin
- `rbf files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
Upgrade
^^^^^^^^
Program from console
.. code-block:: bash
# Always ensure that the client and server software are of the same release.
# copies server, links new server to gotthard2DetectorServer,
# removes old server from respawn, sets up new lnked server to respawn
# programs fpga, reboots
# older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
sls_detector_put update gotthard2DetectorServervxxx pcxxx xxx.rbf
# v6.1.1 - present (copies server from the full path provided)
sls_detector_put update gotthard2DetectorServervxxx xxx.rbf
# Or only program firmware
sls_detector_put programfpga xxx.rbf
.. note ::
If the detector servers did not start up automatically after reboot, you need to add scripts to do that. See :ref:`Automatic start<Automatic start servers>` for more details.
Moench
-------
Download
^^^^^^^^^^^^^
- detector server corresponding to package in slsDetectorPackage/serverBin
- `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
Upgrade
^^^^^^^^
.. warning ::
In case you have had issues in the past with programming via software:
* 6.1.2 server has a fix for seamless fpga programming
* We recommend first updating the on-board detector server to 6.1.2 (with client 6.1.x) using command `updatedetectorserver <commandline.html#term-updatedetectorserver-server_name-with-full-path>`_.
* Then use command 'programfpga' to only update firmware or use command 'update' to update firmware and server to the latest release.
Check :ref:`firmware troubleshooting <blackfin firmware troubleshooting>` if you run into issues while programming firmware.
Program from console
.. code-block:: bash
# Always ensure that the client and server software are of the same release.
# copies server, links new server to moenchDetectorServer,
# removes old server from respawn, sets up new lnked server to respawn
# programs fpga, reboots
# older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
sls_detector_put update moenchDetectorServervxxx pcxxx xx.pof
# v6.1.1 - present (copies server from the full path provided)
sls_detector_put update moenchDetectorServervxxx xx.pof
# Or only program firmware
sls_detector_put programfpga xxx.pof
Ctb
----
Download
^^^^^^^^^^^^^
- detector server corresponding to package in slsDetectorPackage/serverBin
- `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
Upgrade
^^^^^^^^
Check :ref:`firmware troubleshooting <blackfin firmware troubleshooting>` if you run into issues while programming firmware.
Program from console
.. code-block:: bash
# Always ensure that the client and server software are of the same release.
# copies server, links new server to ctbDetectorServer,
# removes old server from respawn, sets up new lnked server to respawn
# programs fpga, reboots
# older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
sls_detector_put update ctbDetectorServervxxx pcxxx xx.pof
# v6.1.1 - present (copies server from the full path provided)
sls_detector_put update ctbDetectorServervxxx xx.pof
# Or only program firmware
sls_detector_put programfpga xxx.pof
.. _blackfin firmware troubleshooting:
Firmware Troubleshooting with blackfin
----------------------------------------
1. v4.x.x client after programming will most likely reboot the blackfin processor, regardless of error.
2. v5.x.x-rcx client after programming will not reboot the blackfin processor, if error occurred.
3. If a reboot occured with an incomplete firmware in flash, the blackfin will most likely not find the mtd3 drive. To see if this drive exists:
.. code-block:: bash
# connect to the board
telnet bchipxxx
# view of mtd3 existing
root:/> more /proc/mtd
dev: size erasesize name
mtd0: 00040000 00020000 "bootloader(nor)"
mtd1: 00100000 00020000 "linux kernel(nor)"
mtd2: 002c0000 00020000 "file system(nor)"
mtd3: 01000000 00010000 "bitfile(spi)"
4. If one can see the mtd3 drive, one can already try to flash again using the **programfpga** command (without rebooting blackfin or detector).
5. If one can't list it, read the next section to try to get the blackfin to list it.
How to get back mtd3 drive remotely (udpating kernel)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
You have 2 alternatives to update the kernel.
1. Commands via software (>= v6.0.0)
.. code-block:: bash
sls_detector_put updatekernel /home/...path-to-kernel-image
2. or command line
.. code-block:: bash
# step 1: get the kernel image (uImage.lzma) from slsdetectorgroup
# and copy it to pc's tftp folder
# step 2: connect to the board
telnet bchipxxx
#step 3: go to directory for space
cd /var/tmp/
# step 3: copy kernel to board
tftp pcxxx -r uImage.lzma -g
# step 4: verify kernel copied properly
ls -lrt
# step 5: erase flash
flash_eraseall /dev/mtd1
# step 6: copy new image to kernel drive
cat uImage.lzma > /dev/mtd1
# step 7:
sync
# step 8:
reboot
# step 9: verification
telnet bchipxxx
uname -a # verify kernel date
more /proc/mtd # verify mtd3 is listed
Last Resort using USB Blaster
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
If none of these steps work, the last resort might be physically upgrading the firmware using a USB blaster, which also requires opening up the detector. Instructions for all the blackfin detectors are the same as the one for :ref:`gotthard firmware upgrade <firmware upgrade using blaster for blackfin>`.

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HDF5 File Format
================================
Compilation
-------------
#. Compile the package with HDF5 option enabled
#. Using cmk script: ./cmk.sh -hj9 -d [path of hdf5 dir] (-d is optional and for custom installation folder)
#. Enable using cmake option **-DSLS_USE_HDF5=ON** and **-DCMAKE_INSTALL_PREFIX=/path/to/custom/hdf/installation** (optional).
Setup
-------
#. Start Receiver process
#. Load config file
#. Set file format using command `fformat <commandline.html#term-fformat-binary-hdf5>`_.
.. code-block:: bash
sls_detector_put fformat hdf5
Master File
-------------
* File Name: [fpath]/[fname]_master_[findex].h5 :ref:`Details here<file name format>`
* It contains :ref:`attributes<master file attributes>` relevant to the acquisition. This can vary with detector type.
.. code-block:: text
/ # Root level
|---> entry # entry group
| |---> data # data group
| |---> column # dataset of each sls_receiver_header member
| |---> data
| |---> detector header version
| |---> detector specific 1
| |---> detector specific 2
| |---> detector specific 3
| |---> detector specific 4
| |---> detector type
| |---> exp length or sub exposure time
| |---> frame number
| |---> mod id
| |---> packets caught
| |---> packets caught bit mask
| |---> row
| |---> timestamp
| |---> instrument # instrument group
| |---> beam # beam group
| |---> detector # detector group
| |---> Master File Attribute 1 # dataset of each master file attribute
| |---> Master File Attribute 2
| |---> Master File Attribute 3
| |---> Master File Attribute ..
| |---> sample # sample group
If more than 1 data file per frame:
* The dataset of each :ref:`**SLS Receiver Header** <sls receiver header format>` member is a virtual dataset.
* **data** dataset is a virtual dataset.
More details regarding master file attributes can be found :ref:`here<master file attributes>`.
Data File
-----------
* File Name: [fpath]/[fname]_dx_fy_[findex].h5 :ref:`Details here<file name format>`
Virtual Data File
------------------
* File Name: [fpath]/[fname]_virtual_[findex].h5 :ref:`Details here<file name format>`
* For multiple modules, a virtual file linking data from all the modules is created. The individual files are expected to be present.
* It is linked in the master file.

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.. slsDetectorPackage documentation master file, created by
sphinx-quickstart on Mon Jul 29 17:38:15 2019.
You can adapt this file completely to your liking, but it should at least
contain the root `toctree` directive.
slsDetectorPackage
==============================================
.. toctree::
:maxdepth: 3
:caption: Installation:
installation
dependencies
consuming
.. toctree::
:caption: C++ API
:maxdepth: 2
detector
result
receiver_api
examples
.. toctree::
:caption: Python API
:maxdepth: 2
pygettingstarted
pydetector
pyenums
pyexamples
.. toctree::
:caption: Command line
:maxdepth: 1
commandline
quick_start_guide
.. toctree::
:caption: Developer
container_utils
type_traits
ToString
.. toctree::
:caption: Firmware
:maxdepth: 2
firmware
.. toctree::
:caption: Detector Server
:maxdepth: 2
servers
serverupgrade
virtualserver
serverdefaults
.. toctree::
:caption: Detector UDP Header
:maxdepth: 2
udpheader
udpconfig
udpdetspec
.. toctree::
:caption: Receiver
:maxdepth: 2
slsreceiver
receivers
.. toctree::
:caption: Receiver Files
:maxdepth: 3
fileformat
slsreceiverheaderformat
masterfileattributes
binaryfileformat
hdf5fileformat
.. toctree::
:caption: Receiver ZMQ Stream
:maxdepth: 2
zmqjsonheaderformat
.. toctree::
:caption: Troubleshooting
troubleshooting
.. Indices and tables
.. ==================
.. * :ref:`genindex`
.. * :ref:`modindex`
.. * :ref:`search`

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.. _Installation:
Installation
===============
.. contents::
:local:
:depth: 2
:backlinks: top
Overview
--------------
The ``slsDetectorPackage`` provides core detector software implemented in C++, along with Python bindings packaged as the ``slsdet`` Python extension module. Choose the option that best fits your environment and use case.
:ref:`conda pre-built binaries`:
Install pre-built binaries for the C++ client, receiver, GUI and the Python API (``slsdet``), simplifying setup across platforms.
:ref:`pip`:
Install only the Python extension module, either by downloading the pre-built library from PyPI or by building the extension locally from source. Available only from v9.2.0 onwards.
:ref:`build from source`:
Compile the entire package yourself, including both the C++ core and the Python bindings, for maximum control and customization. However, make sure that you have the :doc:`dependencies <../dependencies>` installed. If installing using conda, conda will manage the dependencies. Avoid installing packages with pip and conda simultaneously.
.. _conda pre-built binaries:
1. Install pre-built binaries using conda (Recommended)
--------------------------------------------------------
Conda is not only useful to manage python environments but can also
be used as a user space package manager. Dates in the tag (for eg. 2020.07.23.dev0)
are from the developer branch. Please use released tags for stability.
We have four different packages available:
============== =============================================
Package Description
============== =============================================
slsdetlib shared libraries and command line utilities
slsdetgui GUI
slsdet Python bindings
moenchzmq moench
============== =============================================
.. code-block:: bash
#Add channels for dependencies and our library
conda config --add channels conda-forge
conda config --add channels slsdetectorgroup
conda config --set channel_priority strict
#create and activate an environment with our library
#replace 6.1.1 with the required tag
conda create -n myenv slsdetlib=6.1.1
conda activate myenv
#ready to use
sls_detector_get exptime
...
.. code-block:: bash
#List available versions
# lib and binaries
conda search slsdetlib
# python
conda search slsdet
# gui
conda search slsdetgui
# moench
conda search moenchzmq
.. _pip:
2. Pip
-------
The Python extension module ``slsdet`` can be installed using pip. This is available from v9.2.0 onwards.
.. code-block:: bash
#Install the Python extension module from PyPI
pip install slsdet
# or install the python extension locally from source
git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git --branch 9.2.0
cd slsDetectorPackage
pip install .
.. _build from source:
3. Build from source
-------------------------
3.1. Download Source Code from github
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.. code-block:: bash
git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git --branch 6.1.1
.. note ::
For v6.x.x of slsDetectorPackage and older, refer :ref:`pybind11 notes on cloning. <pybind for different slsDetectorPackage versions>`
.. _build from source using cmake:
3.2. Build from Source
^^^^^^^^^^^^^^^^^^^^^^^^^^
One can either build using cmake or use the in-built cmk.sh script.
3.2.1. Build using CMake
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.. code-block:: bash
# outside slsDetecorPackage folder
mkdir build && cd build
# configure & generate Makefiles using cmake
# by listing all your options (alternately use ccmake described below)
# cmake3 for some systems
cmake ../slsDetectorPackage -DCMAKE_INSTALL_PREFIX=/your/install/path
# compiled to the build/bin directory
make -j12 #or whatever number of cores you are using to build
# install headers and libs in /your/install/path directory
make install
Instead of the cmake command, one can use ccmake to get a list of options to configure and generate Makefiles at ease.
.. code-block:: bash
# ccmake3 for some systems
ccmake ..
# choose the options
# first press [c] - configure (until you see [g])
# then press [g] - generate
=============================== ===============================
Example cmake options Comment
=============================== ===============================
-DSLS_USE_PYTHON=ON Python
-DPython_FIND_VIRTUALENV=ONLY Python from the conda env
-DSLS_USE_GUI=ON GUI
-DSLS_USE_HDF5=ON HDF5
-DSLS_USE_SIMULATOR=ON Simulator
=============================== ===============================
.. note ::
For v7.x.x of slsDetectorPackage and older, refer :ref:`zeromq notes for cmake option to hint library location. <zeromq for different slsDetectorPackage versions>`
3.2.2. Build using in-built cmk.sh script
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.. code-block:: bash
The binaries are generated in slsDetectorPackage/build/bin directory.
Usage: $0 [-b] [-c] [-d <HDF5 directory>] [-e] [-g] [-h] [-i]
[-j <Number of threads>] [-k <CMake command>] [-l <Install directory>]
[-m] [-n] [-p] [-r] [-s] [-t] [-u] [-z]
-[no option]: only make
-b: Builds/Rebuilds CMake files normal mode
-c: Clean
-d: HDF5 Custom Directory
-e: Debug mode
-g: Build/Rebuilds gui
-h: Builds/Rebuilds Cmake files with HDF5 package
-i: Builds tests
-j: Number of threads to compile through
-k: CMake command
-l: Install directory
-m: Manuals
-n: Manuals without compiling doxygen (only rst)
-p: Builds/Rebuilds Python API
-r: Build/Rebuilds only receiver
-s: Simulator
-t: Build/Rebuilds only text client
-u: Chip Test Gui
-z: Moench zmq processor
# display all options
./cmk.sh -?
# new build and compile in parallel (recommended basic option):
./cmk.sh -cbj5
# new build, python and compile in parallel:
./cmk.sh -cbpj5
#For rebuilding only certain sections
./cmk.sh -tg #only text client and gui
./cmk.sh -r #only receiver
.. note ::
For v7.x.x of slsDetectorPackage and older, refer :ref:`zeromq notes for cmk script option to hint library location. <zeromq for different slsDetectorPackage versions>`
3.3. Build on old distributions using conda
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
If your linux distribution doesn't come with a C++11 compiler (gcc>4.8) then
it's possible to install a newer gcc using conda and build the slsDetectorPackage
using this compiler
.. code-block:: bash
#Create an environment with the dependencies
conda create -n myenv gxx_linux-64 cmake
conda activate myenv
# outside slsDetecorPackage folder
mkdir build && cd build
cmake ../slsDetectorPackage -DCMAKE_PREFIX_PATH=$CONDA_PREFIX
make -j12
.. note ::
For v7.x.x of slsDetectorPackage and older, refer :ref:`zeromq notes for dependencies for conda. <zeromq for different slsDetectorPackage versions>`
3.4. Build slsDetectorGui (Qt5)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
1. Using pre-built binary on conda
.. code-block:: bash
conda create -n myenv slsdetgui=7.0.0
conda activate myenv
2. Using system installation on RHEL7
.. code-block:: bash
yum install qt5-qtbase-devel.x86_64
yum install qt5-qtsvg-devel.x86_64
3. Using system installation on RHEL8
.. code-block:: bash
yum install qt5-qtbase-devel.x86_64
yum install qt5-qtsvg-devel.x86_64
yum install expat-devel.x86_64
4. Using conda
.. code-block:: bash
#Add channels for dependencies and our library
conda config --add channels conda-forge
conda config --add channels slsdetectorgroup
conda config --set channel_priority strict
# create environment to compile
# on rhel7
conda create -n slsgui gxx_linux-64 gxx_linux-64 mesa-libgl-devel-cos6-x86_64 qt
# on fedora or newer systems
conda create -n slsgui qt
# when using conda compilers, would also need libgl, but no need for it on fedora unless maybe using it with ROOT
# activate environment
conda activate slsgui
# compile with cmake outside slsDetecorPackage folder
mkdir build && cd build
cmake ../slsDetectorPackage -DSLS_USE_GUI=ON
make -j12
# or compile with cmk.sh
cd slsDetectorPackage
./cmk.sh -cbgj9
.. note ::
For v7.x.x of slsDetectorPackage and older, refer :ref:`zeromq notes for dependencies for conda. <zeromq for different slsDetectorPackage versions>`
3.5. Build this documentation
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
The documentation for the slsDetectorPackage is build using a combination
of Doxygen, Sphinx and Breathe. The easiest way to install the dependencies
is to use conda
.. code-block:: bash
conda create -n myenv python=3.12 sphinx sphinx_rtd_theme breathe doxygen numpy
.. code-block:: bash
# using cmake or ccmake to enable DSLS_BUILD_DOCS
# outside slsDetecorPackage folder
mkdir build && cd build
cmake ../slsDetectorPackage -DSLS_BUILD_DOCS=ON
make docs # generate API docs and build Sphinx RST
make rst # rst only, saves time in case the API did not change
4. Pybind and Zeromq
-------------------------
.. _pybind for different slsDetectorPackage versions:
| **Pybind11 for Python**
| v8.0.0+:
| pybind11 is built
| * by default from tar file in repo (libs/pybind/v2.1x.0.tar.gz)
| * or use advanced option SLS_FETCH_PYBIND11_FROM_GITHUB [`link <https://github.com/pybind/pybind11>`__].
| * v9.0.0+: pybind11 (v2.13.6)
| * v8.x.x : pybind11 (v2.11.0)
|
| v7.x.x:
| pybind11 packaged into 'libs/pybind'. No longer a submodule. No need for "recursive" or "submodule update".
|
| Older versions:
| pybind11 is a submodule. Must be cloned using "recursive" and updated when switching between versions using the following commands.
.. code-block:: bash
# Note: Only for v6.x.x versions and older
# clone using recursive to get pybind11 submodule
git clone --recursive https://github.com/slsdetectorgroup/slsDetectorPackage.git
# update submodule when switching between releases
cd slsDetectorPackage
git submodule update --init
.. _zeromq for different slsDetectorPackage versions:
| **Zeromq**
| v8.0.0+:
| zeromq (v4.3.4) is built
| * by default from tar file in repo (libs/libzmq/libzmq-4.3.4.tar.gz)
| * or use advanced option SLS_FETCH_ZMQ_FROM_GITHUB [`link <https://github.com/zeromq/libzmq.git>`__].
|
| v7.x.x and older:
| zeromq-devel must be installed and one can hint its location using
| * cmake option:'-DZeroMQ_HINT=/usr/lib64' or
| * option '-q' in cmk.sh script: : ./cmk.sh -cbj5 -q /usr/lib64
| * 'zeromq' dependency added when installing using conda

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.. _master file attributes:
Master File Attributes
=======================
These attributes are the same in binary and HDF5 file, but vary depending on detector type.
Eiger
^^^^^
+-----------------------+-------------------------------------------------+
| **Key** | **Description** |
+-----------------------+-------------------------------------------------+
| Version | Version of the master file |
| | Current value:8.0 |
+-----------------------+-------------------------------------------------+
| Timestamp | Timestamp of creation of master file |
+-----------------------+-------------------------------------------------+
| Detector Type | Detector type |
+-----------------------+-------------------------------------------------+
| Timing Mode | Timing Mode |
+-----------------------+-------------------------------------------------+
| Geometry | Number of UDP ports in x and y dimension for |
| | complete detector |
+-----------------------+-------------------------------------------------+
| Image Size in bytes | Image size in bytes per UDP port |
+-----------------------+-------------------------------------------------+
| Pixels | Number of pixels in x and y dimension |
| | per UDP port |
+-----------------------+-------------------------------------------------+
| Max Frames Per File | Maximum frames per file |
+-----------------------+-------------------------------------------------+
| Frame Discard Policy | Receiever Frame discard policy |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Frame Padding | Receiver Frame padding enable |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Scan Parameters | Scanning mode on detector |
+-----------------------+-------------------------------------------------+
| Total Frames | Total number of frames and triggers expected |
+-----------------------+-------------------------------------------------+
| Receiver Roi | Receiver ROI in file including xmax and ymax |
+-----------------------+-------------------------------------------------+
| Dynamic Range | Bits per pixel |
+-----------------------+-------------------------------------------------+
| Ten Giga | 10GbE enable for data |
+-----------------------+-------------------------------------------------+
| Exptime | Exposure time |
+-----------------------+-------------------------------------------------+
| Period | Period between frames |
+-----------------------+-------------------------------------------------+
| Threshold Energy | Threshold energy |
+-----------------------+-------------------------------------------------+
| Sub Exptime | Sub exposure time in 32 bit mode |
+-----------------------+-------------------------------------------------+
| Sub Period | Sub period between frames in 32 bit mode |
+-----------------------+-------------------------------------------------+
| Quad | Quad enable (hardware) |
+-----------------------+-------------------------------------------------+
| Number of rows | Number of rows enabled for readout |
+-----------------------+-------------------------------------------------+
| Rate Corrections | Rate Corrections |
+-----------------------+-------------------------------------------------+
| Frames in File | Number of frames written to file by Receiver 0 |
+-----------------------+-------------------------------------------------+
| Frame Header Format | Expected frame header format for the data files |
+-----------------------+-------------------------------------------------+
Jungfrau
^^^^^^^^
+-----------------------+-------------------------------------------------+
| **Key** | **Description** |
+-----------------------+-------------------------------------------------+
| Version | Version of the master file |
| | Current value:8.0 |
+-----------------------+-------------------------------------------------+
| Timestamp | Timestamp of creation of master file |
+-----------------------+-------------------------------------------------+
| Detector Type | Detector type |
+-----------------------+-------------------------------------------------+
| Timing Mode | Timing Mode |
+-----------------------+-------------------------------------------------+
| Geometry | Number of UDP ports in x and y dimension for |
| | complete detector |
+-----------------------+-------------------------------------------------+
| Image Size in bytes | Image size in bytes per UDP port |
+-----------------------+-------------------------------------------------+
| Pixels | Number of pixels in x and y dimension |
| | per UDP port |
+-----------------------+-------------------------------------------------+
| Max Frames Per File | Maximum frames per file |
+-----------------------+-------------------------------------------------+
| Frame Discard Policy | Receiever Frame discard policy |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Frame Padding | Receiver Frame padding enable |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Scan Parameters | Scanning mode on detector |
+-----------------------+-------------------------------------------------+
| Total Frames | Total number of frames and triggers expected |
+-----------------------+-------------------------------------------------+
| Receiver Roi | Receiver ROI in file including xmax and ymax |
+-----------------------+-------------------------------------------------+
| Exptime | Exposure time |
+-----------------------+-------------------------------------------------+
| Period | Period between frames |
+-----------------------+-------------------------------------------------+
| Number of UDP | Number of UDP Interfaces enabled per module |
| Interfaces | |
+-----------------------+-------------------------------------------------+
| Number of rows | Number of rows enabled for readout |
+-----------------------+-------------------------------------------------+
| Frames in File | Number of frames written to file by Receiver 0 |
+-----------------------+-------------------------------------------------+
| Frame Header Format | Expected frame header format for the data files |
+-----------------------+-------------------------------------------------+
Gotthard II
^^^^^^^^^^^^
+-----------------------+-------------------------------------------------+
| **Key** | **Description** |
+-----------------------+-------------------------------------------------+
| Version | Version of the master file |
| | Current value:8.0 |
+-----------------------+-------------------------------------------------+
| Timestamp | Timestamp of creation of master file |
+-----------------------+-------------------------------------------------+
| Detector Type | Detector type |
+-----------------------+-------------------------------------------------+
| Timing Mode | Timing Mode |
+-----------------------+-------------------------------------------------+
| Geometry | Number of UDP ports in x and y dimension for |
| | complete detector |
+-----------------------+-------------------------------------------------+
| Image Size in bytes | Image size in bytes per UDP port |
+-----------------------+-------------------------------------------------+
| Pixels | Number of pixels in x and y dimension |
| | per UDP port |
+-----------------------+-------------------------------------------------+
| Max Frames Per File | Maximum frames per file |
+-----------------------+-------------------------------------------------+
| Frame Discard Policy | Receiever Frame discard policy |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Frame Padding | Receiver Frame padding enable |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Scan Parameters | Scanning mode on detector |
+-----------------------+-------------------------------------------------+
| Total Frames | Total number of frames and triggers expected |
+-----------------------+-------------------------------------------------+
| Receiver Roi | Receiver ROI in file including xmax and ymax |
+-----------------------+-------------------------------------------------+
| Exptime | Exposure time |
+-----------------------+-------------------------------------------------+
| Period | Period between frames |
+-----------------------+-------------------------------------------------+
| Burst Mode | Burst mode of detector |
+-----------------------+-------------------------------------------------+
| Frames in File | Number of frames written to file by Receiver 0 |
+-----------------------+-------------------------------------------------+
| Frame Header Format | Expected frame header format for the data files |
+-----------------------+-------------------------------------------------+
Mythen3
^^^^^^^
+-----------------------+-------------------------------------------------+
| **Key** | **Description** |
+-----------------------+-------------------------------------------------+
| Version | Version of the master file |
| | Current value:8.0 |
+-----------------------+-------------------------------------------------+
| Timestamp | Timestamp of creation of master file |
+-----------------------+-------------------------------------------------+
| Detector Type | Detector type |
+-----------------------+-------------------------------------------------+
| Timing Mode | Timing Mode |
+-----------------------+-------------------------------------------------+
| Geometry | Number of UDP ports in x and y dimension for |
| | complete detector |
+-----------------------+-------------------------------------------------+
| Image Size in bytes | Image size in bytes per UDP port |
+-----------------------+-------------------------------------------------+
| Pixels | Number of pixels in x and y dimension |
| | per UDP port |
+-----------------------+-------------------------------------------------+
| Max Frames Per File | Maximum frames per file |
+-----------------------+-------------------------------------------------+
| Frame Discard Policy | Receiever Frame discard policy |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Frame Padding | Receiver Frame padding enable |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Scan Parameters | Scanning mode on detector |
+-----------------------+-------------------------------------------------+
| Total Frames | Total number of frames and triggers expected |
+-----------------------+-------------------------------------------------+
| Receiver Roi | Receiver ROI in file including xmax and ymax |
+-----------------------+-------------------------------------------------+
| Dynamic Range | Bits per pixel |
+-----------------------+-------------------------------------------------+
| Ten Giga | 10GbE enable for data |
+-----------------------+-------------------------------------------------+
| Period | Period between frames |
+-----------------------+-------------------------------------------------+
| Counter Mask | Mask of counters enabled |
+-----------------------+-------------------------------------------------+
| Exptime1 | Exposure time of counter 1 |
+-----------------------+-------------------------------------------------+
| Exptime2 | Exposure time of counter 2 |
+-----------------------+-------------------------------------------------+
| Exptime3 | Exposure time of counter 3 |
+-----------------------+-------------------------------------------------+
| GateDelay1 | Gate delay of counter 1 |
+-----------------------+-------------------------------------------------+
| GateDelay2 | Gate delay of counter 2 |
+-----------------------+-------------------------------------------------+
| GateDelay3 | Gate delay of counter 3 |
+-----------------------+-------------------------------------------------+
| Gates | Number of gates |
+-----------------------+-------------------------------------------------+
| Threshold energies | Threshold energy of all 3 counters |
+-----------------------+-------------------------------------------------+
| Frames in File | Number of frames written to file by Receiver 0 |
+-----------------------+-------------------------------------------------+
| Frame Header Format | Expected frame header format for the data files |
+-----------------------+-------------------------------------------------+
Moench
^^^^^^
+-----------------------+-------------------------------------------------+
| **Key** | **Description** |
+-----------------------+-------------------------------------------------+
| Version | Version of the master file |
| | Current value:8.0 |
+-----------------------+-------------------------------------------------+
| Timestamp | Timestamp of creation of master file |
+-----------------------+-------------------------------------------------+
| Detector Type | Detector type |
+-----------------------+-------------------------------------------------+
| Timing Mode | Timing Mode |
+-----------------------+-------------------------------------------------+
| Geometry | Number of UDP ports in x and y dimension for |
| | complete detector |
+-----------------------+-------------------------------------------------+
| Image Size in bytes | Image size in bytes per UDP port |
+-----------------------+-------------------------------------------------+
| Pixels | Number of pixels in x and y dimension |
| | per UDP port |
+-----------------------+-------------------------------------------------+
| Max Frames Per File | Maximum frames per file |
+-----------------------+-------------------------------------------------+
| Frame Discard Policy | Receiever Frame discard policy |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Frame Padding | Receiver Frame padding enable |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Scan Parameters | Scanning mode on detector |
+-----------------------+-------------------------------------------------+
| Total Frames | Total number of frames and triggers expected |
+-----------------------+-------------------------------------------------+
| Receiver Roi | Receiver ROI in file including xmax and ymax |
+-----------------------+-------------------------------------------------+
| Exptime | Exposure time |
+-----------------------+-------------------------------------------------+
| Period | Period between frames |
+-----------------------+-------------------------------------------------+
| Number of UDP | Number of UDP Interfaces enabled per module |
| Interfaces | |
+-----------------------+-------------------------------------------------+
| Number of rows | Number of rows enabled for readout |
+-----------------------+-------------------------------------------------+
| Frames in File | Number of frames written to file by Receiver 0 |
+-----------------------+-------------------------------------------------+
| Frame Header Format | Expected frame header format for the data files |
+-----------------------+-------------------------------------------------+
Gotthard I
^^^^^^^^^^^
+-----------------------+-------------------------------------------------+
| **Key** | **Description** |
+-----------------------+-------------------------------------------------+
| Version | Version of the master file |
| | Current value:8.0 |
+-----------------------+-------------------------------------------------+
| Timestamp | Timestamp of creation of master file |
+-----------------------+-------------------------------------------------+
| Detector Type | Detector type |
+-----------------------+-------------------------------------------------+
| Timing Mode | Timing Mode |
+-----------------------+-------------------------------------------------+
| Geometry | Number of UDP ports in x and y dimension for |
| | complete detector |
+-----------------------+-------------------------------------------------+
| Image Size in bytes | Image size in bytes per UDP port |
+-----------------------+-------------------------------------------------+
| Pixels | Number of pixels in x and y dimension |
| | per UDP port |
+-----------------------+-------------------------------------------------+
| Max Frames Per File | Maximum frames per file |
+-----------------------+-------------------------------------------------+
| Frame Discard Policy | Receiever Frame discard policy |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Frame Padding | Receiver Frame padding enable |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Scan Parameters | Scanning mode on detector |
+-----------------------+-------------------------------------------------+
| Total Frames | Total number of frames and triggers expected |
+-----------------------+-------------------------------------------------+
| Receiver Roi | Receiver ROI in file including xmax and ymax |
+-----------------------+-------------------------------------------------+
| Exptime | Exposure time |
+-----------------------+-------------------------------------------------+
| Period | Period between frames |
+-----------------------+-------------------------------------------------+
| Detector Roi | Roi in detector restricted to an ADC. |
| | Includes xmax |
+-----------------------+-------------------------------------------------+
| Burst Mode | Burst mode of detector |
+-----------------------+-------------------------------------------------+
| Frames in File | Number of frames written to file by Receiver 0 |
+-----------------------+-------------------------------------------------+
| Frame Header Format | Expected frame header format for the data files |
+-----------------------+-------------------------------------------------+
Chip Test Board
^^^^^^^^^^^^^^^
+-----------------------+-------------------------------------------------+
| **Key** | **Description** |
+-----------------------+-------------------------------------------------+
| Version | Version of the master file |
| | Current value:8.0 |
+-----------------------+-------------------------------------------------+
| Timestamp | Timestamp of creation of master file |
+-----------------------+-------------------------------------------------+
| Detector Type | Detector type |
+-----------------------+-------------------------------------------------+
| Timing Mode | Timing Mode |
+-----------------------+-------------------------------------------------+
| Geometry | Number of UDP ports in x and y dimension for |
| | complete detector |
+-----------------------+-------------------------------------------------+
| Image Size in bytes | Image size in bytes per UDP port |
+-----------------------+-------------------------------------------------+
| Pixels | Number of pixels in x and y dimension |
| | per UDP port |
+-----------------------+-------------------------------------------------+
| Max Frames Per File | Maximum frames per file |
+-----------------------+-------------------------------------------------+
| Frame Discard Policy | Receiever Frame discard policy |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Frame Padding | Receiver Frame padding enable |
| | for partial frames |
+-----------------------+-------------------------------------------------+
| Scan Parameters | Scanning mode on detector |
+-----------------------+-------------------------------------------------+
| Total Frames | Total number of frames and triggers expected |
+-----------------------+-------------------------------------------------+
| Receiver Roi | Receiver ROI in file including xmax and ymax |
+-----------------------+-------------------------------------------------+
| Exptime | Exposure time |
+-----------------------+-------------------------------------------------+
| Period | Period between frames |
+-----------------------+-------------------------------------------------+
| Ten Giga | Ten giga enable |
+-----------------------+-------------------------------------------------+
| ADC Mask | Mask of channels enabled in ADC |
+-----------------------+-------------------------------------------------+
| Analog Flag | Analog readout enable |
+-----------------------+-------------------------------------------------+
| Analog Samples | Number of analog samples |
+-----------------------+-------------------------------------------------+
| Digital Flag | Digital readout enable |
+-----------------------+-------------------------------------------------+
| Digital Samples | Number of digital samples |
+-----------------------+-------------------------------------------------+
| Dbit Offset | Digital offset of valid data in bytes |
+-----------------------+-------------------------------------------------+
| Dbit Bitset | Digital 64 bit mask of bits enabled in receiver |
+-----------------------+-------------------------------------------------+
| Transceiver Mask | Mask of channels enabled in Transceiver |
+-----------------------+-------------------------------------------------+
| Transceiver Flag | Transceiver readout enable |
+-----------------------+-------------------------------------------------+
| Transceiver Samples | Number of transceiver samples |
+-----------------------+-------------------------------------------------+
| Frames in File | Number of frames written to file by Receiver 0 |
+-----------------------+-------------------------------------------------+
| Frame Header Format | Expected frame header format for the data files |
+-----------------------+-------------------------------------------------+

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Detector
=====================================================
.. py:currentmodule:: slsdet
.. autoclass:: Detector
:members:
:undoc-members:
:show-inheritance:
:inherited-members:

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Enums
===========
These enums are defined in slsDetectorDefs in the C++ package and
exposed to Python through pybind11.
::
# Most settings are represented as enums that can be
# explicitly imported
from slsdet import Detector, fileFormat
d = Detector()
d.fformat = fileFormat.BINARY
# Altough not recommended for convenience all enums
# and some other things can be impored using *
from slsdet import *
d.speed = speedLevel.FULL_SPEED
# To list the available enums, use dir()
import slsdet.enums
for enum in dir(slsdet.enums):
# filter out special memebers
if not enum.startswith('_'):
print(enum)
.. py:currentmodule:: slsdet
.. autoclass:: runStatus
:undoc-members:
.. autoclass:: detectorType
:undoc-members:
.. autoclass:: frameDiscardPolicy
:undoc-members:
.. autoclass:: fileFormat
:undoc-members:
.. autoclass:: dimension
:undoc-members:
.. autoclass:: externalSignalFlag
:undoc-members:
.. autoclass:: timingMode
:undoc-members:
.. autoclass:: dacIndex
:undoc-members:
.. autoclass:: detectorSettings
:undoc-members:
.. autoclass:: clockIndex
:undoc-members:
.. autoclass:: speedLevel
:undoc-members:
.. autoclass:: readoutMode
:undoc-members:
.. autoclass:: burstMode
:undoc-members:
.. autoclass:: timingSourceType
:undoc-members:
.. autoclass:: M3_GainCaps
:undoc-members:
.. autoclass:: portPosition
:undoc-members:
.. autoclass:: streamingInterface
:undoc-members:
.. autoclass:: vetoAlgorithm
:undoc-members:
.. autoclass:: gainMode
:undoc-members:

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Examples
================
Some short examples on how to use slsdet. If something is missing don't hesitate to
open an issue in our our `github repo
<https://github.com/slsdetectorgroup/slsDetectorPackage>`_.
------------------------------------
Setting exposure time
------------------------------------
Setting and reading back exposure time can be done either using a Python
datetime.timedelta, DurationWrapper or by setting the time in seconds.
::
# Set exposure time to 1.2 seconds
>>> d.exptime = 1.2
>>> d.exptime = 5e-07
# Setting exposure time using timedelta (upto microseconds precision)
import datetime as dt
>>> d.exptime = dt.timedelta(seconds = 1.2)
>>> d.exptime = dt.timedelta(seconds = 1, microseconds = 3)
# With timedelta any arbitrary combination of units can be used
>>> t = dt.timedelta(microseconds = 100, seconds = 5.3, minutes = .3)
# using DurationWrapper to set in seconds
>>> from slsdet import DurationWrapper
>>> d.exptime = DurationWrapper(1.2)
# using DurationWrapper to set in ns
>>> t = DurationWrapper()
>>> t.set_count(500)
>>> d.exptime = t
# To set exposure time for individual detector one have to resort
# to the C++ style API.
# Sets exposure time to 1.2 seconds for module 0, 6 and 12
>>> d.setExptime(1.2, [0, 6, 12])
>>> d.setExptime(dt.timedelta(seconds = 1.2), [0, 6, 12])
# to get in seconds
>>> d.period
181.23
# to get in DurationWrapper
>>> d.getExptime()
[sls::DurationWrapper(total_seconds: 181.23 count: 181230000000)]
------------------------------------
Converting numbers to hex
------------------------------------
Python support entering numbers in format by using the 0x prefix. However, when reading
back you will get a normal integer. This can then be converted to a hex string representation
using the built in hex() function.
.. code-block :: python
from slsdet import Detector
>>> d = Detector()
>>> d.patwait0 = 0xaa
>>> d.patwait0
170
# Convert to string
>>> hex(d.patwait0)
'0xaa'
For multiple values one can use a list comprehension to loop over the values.
.. code-block :: python
>>> values = [1,2,3,4,5]
>>> [(v) for v in values]
['0x1', '0x2', '0x3', '0x4', '0x5']
# or to a single string by passing the list to .join
>>> ', '.join([hex(v) for v in values])
'0x1, 0x2, 0x3, 0x4, 0x5'
------------------------
Simple threshold scan
------------------------
Assuming you have set up your detector with exposure time, period, enabled
file writing etc.
.. code-block:: python
from slsdet import Eiger
d = Eiger()
threshold = range(0, 2000, 200)
for th in threshold:
d.vthreshold = th
d.acquire()
If we want to control the shutter of for example, the big X-ray box we can add
this line in our code. It then opens the shutter just before the measurement
and closes is afterwards.
::
with xrf_shutter_open(box, 'Fe'):
for th in threshold:
d.vthreshold = th
d.acquire()
-----------------------
Reading temperatures
-----------------------
::
d.temp
>>
temp_fpga : 43.19°C, 51.83°C
temp_fpgaext : 38.50°C, 38.50°C
temp_10ge : 39.50°C, 39.50°C
temp_dcdc : 42.50°C, 42.50°C
temp_sodl : 39.50°C, 40.50°C
temp_sodr : 39.50°C, 40.50°C
temp_fpgafl : 40.87°C, 37.61°C
temp_fpgafr : 34.51°C, 35.63°C
d.temp.fpga
>> temp_fpga : 40.84°C, 39.31°C
t = d.temp.fpga[0]
t
>> 40.551
t = d.temp.fpga[:]
t
>> [40.566, 39.128]
-----------------------
Non blocking acquire
-----------------------
There are mainly two ways to achieve a non blocking acquire when calling from the Python API. One is to manually start
the detector and the second one is to launch the normal acquire from a different process. Depending on your measurement
it might also be better to run the other task in a seperate process and use acq in the main thread.
But lets start looking at the at the manual way:
::
import time
from slsdet import Detector, runStatus
n_frames = 10
t_exp = 1
# Set exposure time and number of frames
d = Detector()
d.exptime = t_exp
d.frames = n_frames
# Start the measurement
t0 = time.time()
d.startDetector()
d.startReceiver()
# Wait for the detector to be ready or do other important stuff
time.sleep(t_exp * n_frames)
# check if the detector is ready otherwise wait a bit longer
while d.status != runStatus.IDLE:
time.sleep(0.1)
# Stop the receiver after we got the frames
# Detector is already idle so we don't need to stop it
d.stopReceiver()
lost = d.rx_framescaught - n_frames
print(
f"{n_frames} frames of {t_exp}s took {time.time()-t0:{.3}}s with {lost} frames lost "
)
Instead launching d.acq() from a different process is a bit easier since the control of receiver and detector
is handled in the acq call. However, you need to join the process used otherwise a lot of zombie processes would
hang around until the main process exits.
::
import time
from multiprocessing import Process
from slsdet import Detector, runStatus
d = Detector()
#Create a separate process to run acquire in
p = Process(target=d.acquire)
#Start the thread and short sleep to allow the acq to start
p.start()
time.sleep(0.01)
#Do some other work
while d.status != runStatus.IDLE:
print("Working")
time.sleep(0.1)
#Join the process
p.join()
------------------------------
Setting and getting times
------------------------------
::
import datetime as dt
from slsdet import Detector
from slsdet.utils import element_if_equal
d = Detector()
# The simplest way is to set the exposure time in
# seconds by using the exptime property
# This sets the exposure time for all modules
d.exptime = 0.5
# exptime also accepts a python datetime.timedelta (upto microseconds resolution)
t = dt.timedelta(milliseconds = 2.3)
d.exptime = t
# or combination of units
t = dt.timedelta(minutes = 3, seconds = 1.23)
d.exptime = t
# using DurationWrapper to set in seconds
>>> from slsdet import DurationWrapper
>>> d.exptime = DurationWrapper(1.2)
# using DurationWrapper to set in ns
>>> t = DurationWrapper()
>>> t.set_count(500)
>>> d.exptime = t
# exptime however always returns the time in seconds
>>> d.exptime
181.23
# To get back the exposure time for each module
# it's possible to use getExptime, this also returns
# the values as DurationWrapper
>>> d.getExptime()
[sls::DurationWrapper(total_seconds: 181.23 count: 181230000000)]
# In case the values are the same it's possible to use the
# element_if_equal function to reduce the values to a single
# value
>>> t = d.getExptime()
>>> element_if_equal(t)
sls::DurationWrapper(total_seconds: 1.2 count: 1200000000)
--------------
Reading dacs
--------------
::
from slsdet import Detector, Eiger, dacIndex
#using the specialized class
e = Eiger()
>>> e.dacs
========== DACS =========
vsvp : 0 0
vtrim : 2480 2480
vrpreamp : 3300 3300
vrshaper : 1400 1400
vsvn : 4000 4000
vtgstv : 2556 2556
vcmp_ll : 1000 1000
vcmp_lr : 1000 1000
vcal : 0 0
vcmp_rl : 1000 1000
rxb_rb : 1100 1100
rxb_lb : 1100 1100
vcmp_rr : 1000 1000
vcp : 1000 1000
vcn : 2000 2000
vishaper : 1550 1550
iodelay : 650 650
# or using the general class and the list
d = Detector()
for dac in d.daclist:
r = d.getDAC(dac, False)
print(f'{dac.name:10s} {r}')

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Getting Started
==================
--------------------
Which Python?
--------------------
We require at least Python 3.8 and strongly recommended that you don't use the system
Python installation. The examples in this documentation uses `conda
<https://docs.conda.io/en/latest/miniconda.html>`_ since it provides good support
also for non Python packages but there are also other alternatives like, pyenv.
Using something like conda also allows you to quickly switch beteen different Python
environments.
---------------------
Building from Source
---------------------
If you are not installing slsdet binaries from conda, but instead building from
source, please refer to :ref:`the installation section<Installation>` for details.
Don't forget to compile with the option SLS_USE_PYTHON=ON to enable the Python
bindings or if you use the cmk.sh script -p.
.. note ::
Ensure that the sls det python lib compiled is for the expected python version.
For example, build/bin/_slsdet.cpython-39-x86_64-linux-gnu.so for Python v3.9.x
---------------------
PYTHONPATH
---------------------
If you install slsdet binaries using conda everything is set up and you can
directly start using the Python bindings. However, if you build
from source you need to tell Python where to find slsdet to use it. This
can be done by adding your build/bin directory to PYTHONPATH.
.. code-block:: bash
export PYTHONPATH = /path/to/your/build/bin:$PYTHONPATH
--------------------------------------
Which detector class should I use?
--------------------------------------
We provide a generic class called Detector and detector specific
versions like, Eiger, Jungfrau etc. The most or all functionality
is there in the base class except the convenient access to dacs
and temperatures.
::
from slsdet import Detector, Eiger
d = Detector()
e = Eiger()
# Both classes can be used to control an Eiger detector
d.exptime = 0.5
e.period = 1
# But Eiger gives a simpler interface to the dacs
>>> e.dacs
========== DACS =========
vsvp : 0
vtrim : 2480
vrpreamp : 3300
vrshaper : 1400
vsvn : 4000
vtgstv : 2556
vcmp_ll : 1000
vcmp_lr : 1000
vcal : 0
vcmp_rl : 1000
rxb_rb : 1100
rxb_lb : 1100
vcmp_rr : 1000
vcp : 1000
vcn : 2000
vishaper : 1550
iodelay : 650
.. note ::
Depending on user feedback we might move some detector specific
functionality to the specialized classes.
----------------------------------
Hey, there seems to be two APIs?
----------------------------------
To make the Python API approachable, both if you come from the command line
or are using the C++ API, we provide two interfaces to the detector.
One is property based and tries to stay as close to the command line syntax
as is possible, and the other one directly maps the C++ API found in Detector.h.
There is also an underlying design reason for the two APIs since we auto
generate the bindings to the C++ code using a mix of pybind11 and clang-tools.
The property based API covers most of the functionality but in some cases
you have to reach for the C++ like interface.
::
d = Detector()
# C++ like API
d.setExptime(0.1)
# or a bit more pythonic
d.exptime = 0.1
The c++ style API offers more control over access to individual modules
in a large detector.
::
# Set exposure time for module 1, 5 and 7
d.setExptime(0.1, [1,5,7])
--------------------
Finding functions
--------------------
To find out which properties and methods that a Python object have you
can use dir()
::
>>> from slsdet import Detector
>>> d = Detector()
>>> dir(d)
['__class__', '__delattr__', '__dict__', '__dir__', '__doc__',
'__eq__', '__format__', '__ge__', '__getattribute__', '__gt__',
'__hash__', '__init__', '__init_subclass__', '__le__', '__len__',
'__lt__', '__module__', '__ne__', '__new__', '__reduce__',
'__reduce_ex__', '__repr__', '__setattr__', '__sizeof__',
'__str__', '__subclasshook__', '_adc_register', '_frozen',
'_register', 'acquire', 'adcclk', 'adcphase', 'adcpipeline',
'adcreg', 'asamples', 'auto_comp_disable', 'clearAcquiringFlag',
'clearBit', 'clearROI', 'client_version', 'config',
'counters', 'daclist', 'dacvalues', 'dbitclk', 'dbitphase' ...
Since the list for Detector is rather long it's an good idea to filter it.
The following example gives you properties and methods containing time in
their name.
::
>>> [item for item in dir(d) if 'time' in item]
['compdisabletime', 'exptime', 'exptimel', 'frametime', 'getExptime',
'getExptimeForAllGates', 'getExptimeLeft', 'getSubExptime', 'patwaittime',
'patwaittime0', 'patwaittime1', 'patwaittime2', 'runtime', 'setExptime',
'setSubExptime', 'subdeadtime', 'subexptime']
The above method works on any Python object but for convenience we also
included two functions to find names. View prints the names one per line
while find returns a list of names.
::
from slsdet.lookup import view, find
>>> view('exptime')
exptime
exptimel
getExptime
getExptimeForAllGates
getExptimeLeft
getSubExptime
setExptime
setSubExptime
subexptime
>>> find('exptime')
['exptime', 'getExptime', 'getExptimeForAllGates', 'getExptimeLeft',
'getSubExptime', 'setExptime', 'setSubExptime', 'subexptime']
------------------------------------
Finding out what the function does
------------------------------------
To access the documentation of a function directly from the Python prompt use help().
.. code-block :: python
>>> help(Detector.period)
Help on property:
Period between frames, accepts either a value in seconds or datetime.timedelta
Note
-----
:getter: always returns in seconds. To get in DurationWrapper, use getPeriod
Example
-----------
>>> # setting directly in seconds
>>> d.period = 1.05
>>>
>>> # setting directly in seconds
>>> d.period = 5e-07
>>>
>>> # using timedelta (up to microseconds precision)
>>> from datatime import timedelta
>>> d.period = timedelta(seconds = 1, microseconds = 3)
>>>
>>> # using DurationWrapper to set in seconds
>>> from slsdet import DurationWrapper
>>> d.period = DurationWrapper(1.2)
>>>
>>> # using DurationWrapper to set in ns
>>> t = DurationWrapper()
>>> t.set_count(500)
>>> d.period = t
>>>
>>> # to get in seconds
>>> d.period
181.23
>>>
>>> d.getExptime()
[sls::DurationWrapper(total_seconds: 181.23 count: 181230000000)]
----------------------
Where are the ENUMs?
----------------------
To set some of the detector settings like file format you have
to pass in an enum.
::
>>> d.setFileFormat(fileFormat.BINARY)
The enums can be found in slsdet.enums
::
import slsdet
>>> [e for e in dir(slsdet.enums) if not e.startswith('_')]
['M3_GainCaps', 'burstMode', 'clockIndex', 'cls', 'dacIndex', 'detectorSettings',
'detectorType', 'dimension', 'externalSignalFlag', 'fileFormat',
'frameDiscardPolicy', 'gainMode', 'name', 'polarity', 'portPosition',
'readoutMode', 'runStatus', 'speedLevel', 'streamingInterface', 'timingMode',
'timingSourceType', 'vetoAlgorithm']
# Even though importing using * is not recommended one could
# get all the enums like this:
>>> from slsdet.enums import *

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Quick Start Guide
=================
Detector
--------
Start up detector (with cooling if required). Ensure both control server and stop server is running on-board.
Or use a detector simulator to test. Click :ref:`here<Virtual Detector Servers>` for further instructions.
Receiver
--------
| One has to start the slsReceiver before loading config file or using any receiver commands (prefix: **rx_** )
For a Single Module
.. code-block:: bash
# default port 1954
slsReceiver
# custom port 2012
slsReceiver -t2012
For Multiple Modules
.. code-block:: bash
# slsMultiReceiver [starting port] [number of receivers] [print each frame header for debugging]
slsMultiReceiver 2012 2 0
Client
------
Refer :ref:`Sample Config file` to create config file.
.. code-block:: bash
# load config file
sls_detector_put config /path/sample.config
# set number of frames
sls_detector_put frames 5
# acquire
sls_detector_acquire
.. _Sample Config file:
Sample Config file
^^^^^^^^^^^^^^^^^^
There are sample config files for each detector in slsDetectorPackage/examples folder.
For a Single Module
.. code-block:: bash
# connects to module
hostname bchipxxx
# connects to receiver at default port
rx_hostname mpc1922
# or to connect to specific port
# rx_hostname mpc1922:2012
# sets destination udp ports (not needed, default is 50001)
udp_dstport 50012
# 1g data out
# source udp ips must be same subnet at destintaion udp ips
# udp_srcip 192.168.1.112
# destination udp ip picked up from rx_hostname (if auto)
# udp_dstip auto
# 10g data out
udp_srcip 10.30.20.200
udp_dstip 10.30.20.6
# set file path
fpath /tmp
For a Single Module with custom Receiver (not slsReceiver)
.. code-block:: bash
# connects to module
hostname bchipxxx
# sets destination udp ports (not needed, default is 50001)
udp_dstport 50012
# source udp ips must be same subnet at destintaion udp ips
udp_srcip 192.168.1.112
# destination udp ip
udp_dstip 192.168.1.100
# source udp mac
udp_srcmac aa:bb:cc:dd:ee:ff
# destination udp mac
udp_dstmac 3c:ab:98:bf:50:60
# set file path
fpath /tmp
For Multiple Modules
.. code-block:: bash
# connects to mulitple modules
hostname bchipxxx+bchipyyy+
# tcp port increases for each module (multi detector command)
rx_tcpport 2012
# connects to receivers at ports 2012 and 2014
rx_hostname mpc1922
# increasing udp ports (multi detector command)
udp_dstport 50012
# source udp ips must be same subnet at destintaion udp ips
0:udp_srcip 192.168.1.112
1:udp_srcip 192.168.1.114
# destination udp ip picked up from rx_hostname (if auto)
udp_dstip auto
# set file path
fpath /tmp
.. note ::
The **hostname** and **detsize** command in a multi module system can affect the row and column values in the udp/zmq header. The modules are stacked row by row until they reach the y-axis limit set by detsize (if specified). Then, stacking continues in the next column and so on.
Gui
----
Compile with SLS_USE_GUI=ON in cmake or -g option in cmk.sh script. One can also just use the conda binary. Refer :ref:`installation instructions<Installation>`.
.. code-block:: bash
slsDetectorGui
.. note ::
| The streaming high water mark (commmand: rx_zmqhwm) and the receiving high water mark (command: zmqhwm) is by default the lib zmq's default (currently 1000).
| At Gui startup, these values are set to 2. Hence, for very fast detectors, many frames will be dropped to be able to view the latest in the gui.
| One can still change this setting in the gui in the Plot tab (ZMQ Streaming), from the command line or API.
| Both hwm's can be set to a -1 to use the lib's default.
| Since the dummy end of acquisition packet streamed from receiver might also be lost, receiver restreams until gui acknowledges.

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Receiver
==============================================
.. doxygenclass:: sls::Receiver
:members:
.. :undoc-members:

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Custom Receiver
=================
The receiver essentially listens to UDP data packets sent out by the detector.
To know more about detector receiver setup in the config file, please check out :ref:`the detector-receiver UDP configuration in the config file<detector udp header config>` and the :ref:`detector udp format<detector udp header>`.
| Please note the following when using a custom receiver:
* **udp_dstmac** must be configured in the config file. This parameter is not required when using an in-built receiver.
* Cannot use "auto" for **udp_dstip**.
* No **rx_** commands in the config file. These commands are for configuring the slsReceiver.
The main difference is the lack of **rx_** commands or file commands (eg. **f**write, **f**path) and the **udp_dstmac** is required in config file.
Example of a custom receiver config file
.. code-block:: bash
# detector hostname
hostname bchip052
# udp destination port (receiver)
udp_dstport 50004
# udp destination ip (receiver)
udp_dstip 10.0.1.100
# udp source ip (same subnet as udp_dstip)
udp_srcip 10.0.1.184
# udp destination mac
udp_dstmac 22:47:d5:48:ad:ef

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.. _Result Class:
Result
==============================================
.. doxygenfile:: Result.h

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Default Values
==============================================
Mythen3
-------------
.. csv-table:: Default values
:file: mythen3.csv
:widths: 35, 35
:header-rows: 1
DACS
^^^^^^^^^^^^^
.. csv-table:: Mythen3 DACS
:file: mythen3-dacs.csv
:widths: 35, 35
:header-rows: 1
Gotthard2
-------------
.. csv-table:: Default values
:file: gotthard2.csv
:widths: 35, 35
:header-rows: 1
DACS
^^^^^^^^^^^^^
.. csv-table:: Gotthard 2 DACS
:file: gotthard2-dacs.csv
:widths: 35, 35
:header-rows: 1
Moench
-------------
.. csv-table:: Default values
:file: moench.csv
:widths: 35, 35
:header-rows: 1
DACS
^^^^^^^^^^^^^
.. csv-table:: Moench DACS
:file: moench-dacs.csv
:widths: 35, 35
:header-rows: 1
Ctb
-------------
.. csv-table:: Default values
:file: ctb.csv
:widths: 35, 35
:header-rows: 1
Eiger
-------------
.. csv-table:: Default values
:file: eiger.csv
:widths: 35, 35
:header-rows: 1
DACS
^^^^^^^^^^^^^
.. csv-table:: Eiger DACS
:file: eiger-dacs.csv
:widths: 35, 35
:header-rows: 1
Jungfrau
-------------
.. csv-table:: Default values
:file: jungfrau.csv
:widths: 35, 35
:header-rows: 1
DACS
^^^^^^^^^^^^^
.. csv-table:: Jungfrau DACS
:file: jungfrau-dacs.csv
:widths: 35, 35
:header-rows: 1
Gotthard
-------------
.. csv-table:: Default values
:file: gotthard.csv
:widths: 35, 35
:header-rows: 1
DACS
^^^^^^^^^^^^^
.. csv-table:: Gotthard DACS
:file: gotthard-dacs.csv
:widths: 35, 35
:header-rows: 1

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Getting Started
===============
Detector Servers include:
* Control server [default port: 1952]
* Almost all client communication.
* Stop server [default port: 1953]
* Client requests for detector status, stop acquisition, temperature, advanced read/write registers.
When using a blocking acquire command (sls_detector_acquire or Detector::acquire), the control server is blocked until end of acquisition. However, stop server commands could be used in parallel.
Location
---------
slsDetectorPackage/serverBin/ folder in every release.
.. _Detector Server Arguments:
Arguments
---------
.. code-block:: bash
Possible arguments are:
-v, --version : Software version
-p, --port <port> : TCP communication port with client.
-g, --nomodule : [Mythen3][Gotthard2]
Generic or No Module mode. Skips detector type checks.
-f, --phaseshift <value> : [Gotthard] only. Sets phase shift.
-d, --devel : Developer mode. Skips firmware checks.
-u, --update : Update mode. Skips firmware checks and initial detector setup.
-i, --ignore-config : [Eiger][Jungfrau][Gotthard][Gotthard2][Moench]
Ignore config file.
-m, --master <master> : [Eiger][Mythen3][Gotthard][Gotthard2]
Set Master to 0 or 1. Precedence over config file. Only for virtual servers except Eiger.
-t, --top <top> : [Eiger] Set Top to 0 or 1. Precedence over config file.
-s, --stopserver : Stop server. Do not use as it is created by control server
.. _Automatic start servers:
Automatic start
------------------
One can start the on-board detector server automatically upon powering on the board.
#. Create a soft link to the binary on board:
.. code-block:: bash
ln -sf someDetectorServervx.x.x someDetectorServer
#. Do the following depending on the detector type :
Eiger
.. code-block:: bash
# create script in rc5.d on the board
vi /etc/rc5.d/S50board_com.sh
# enter the following (edit server name)
#! /bin/sh
/home/root/executables/eigerDetectorServer &> /dev/null &
exit 0
Jungfrau | Moench | CTB | Gotthard I
.. code-block:: bash
# Edit inittab on board
vi /etc/inittab
# enter the following line
ttyS0::respawn:/./xxxDetectorServer
Gotthard II | Mythen III
.. code-block:: bash
# create script in init.d on board
vi /etc/init.d/S99detServer.sh
# enter the following (edit server name)
#! /bin/sh
cd /root >> /dev/null
/root/xxxDetectorServer >> /dev/null &
#. Sync, reboot and verify:
.. code-block:: bash
sync
# physically reboot for Gotthard II or Mythen III
reboot
# verify
ps -ef | grep xxxDetectorServer

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.. _Detector Server Upgrade:
Upgrade
========
**Location:** slsDetectorPackage/serverBin/ folder for every release.
.. note ::
For Mythen3, Gotthard2 and Eiger, you need to add scripts to automatically start detector server upon power on. See :ref:`Automatic start<Automatic start servers>` for more details.
.. note ::
Eiger requires a manual reboot. Or killall the servers and restart the new linked one. If you are in the process of updating firmware, then don't reboot yet.
6.1.1+ (no tftp required)
---------------------------------------
#. Program from console
.. code-block:: bash
# the following command copies new server, creates a soft link to xxxDetectorServerxxx
# [Jungfrau][CTB][Moench] also deletes the old server binary and edits initttab to respawn server on reboot
# Then, the detector controller will reboot (except Eiger)
sls_detector_put updatedetectorserver /complete-path-to-binary/xxxDetectorServerxxx
#. Copy the detector server specific config files or any others required to the detector:
.. code-block:: bash
sls_detector_put execcommand "tftp pcxxx -r configxxx -g"
5.0.0 - 6.1.1
--------------
#. Install tftp and copy detector server binary to tftp folder
#. Program from console
.. code-block:: bash
# the following command copies new server from pc tftp folder, creates a soft link to xxxDetectorServerxxx
# [Jungfrau][CTB][Moench] also edits initttab to respawn server on reboot
# Then, the detector controller will reboot (except Eiger)
sls_detector_put copydetectorserver xxxDetectorServerxxx pcxxx
#. Copy the detector server specific config files or any others required to the detector:
.. code-block:: bash
sls_detector_put execcommand "tftp pcxxx -r configxxx -g"
Troubleshooting with tftp
^^^^^^^^^^^^^^^^^^^^^^^^^
#. tftp write error: There is no space left. Please delete some old binaries and try again.
#. text file busy: You are trying to copy the same server.
< 5.0.0
--------
Please contact us.

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In-built Receiver
================================
The receiver essentially listens to UDP data packets sent out by the detector. It's main features are:
- **Listening**: Receives UDP data from the detector.
- **Writing to File**: Optionally writes received data to disk.
- **Streaming via ZMQ**: Optionally streams out the data using ZeroMQ.
Each of these operations runs asynchronously and in parallel for each UDP port.
.. note ::
* Can be run on the same or different machine as the client.
* Can be configured by the client. (set file name/ discard policy, get progress etc.)
* Has to be started before the client runs any receiver specific command.
Receiver Variants
-----------------
There are three main receiver types. How to start them is described :ref:`below<Starting up the Receiver>`.
+----------------------+--------------------+-----------------------------------------+--------------------------------+
| Receiver Type | slsReceiver | slsMultiReceiver |slsFrameSynchronizer |
+======================+====================+=========================================+================================+
| Modules Supported | 1 | Multiple | Multiple |
+----------------------+--------------------+-----------------------------------------+--------------------------------+
| Internal Architecture| Threads per porttt | Multiple child processes of slsReceiver | Multi-threading of slsReceiver |
+----------------------+--------------------+-----------------------------------------+--------------------------------+
| ZMQ Streaming | Disabled by default| Disabled by default | Enabled, not optional |
+----------------------+--------------------+-----------------------------------------+--------------------------------+
| ZMQ Synchronization | No | No | Yes, across ports |
+----------------------+--------------------+-----------------------------------------+--------------------------------+
| Image Reconstruction | No | No | No |
+----------------------+--------------------+-----------------------------------------+--------------------------------+
.. _Starting up the Receiver:
Starting up the Receiver
-------------------------
For a Single Module
.. code-block:: bash
slsReceiver # default port 1954
slsReceiver -t2012 # custom port 2012
For Multiple Modules
.. code-block:: bash
# each receiver (for each module) requires a unique tcp port (if all on same machine)
# option 1 (one for each module)
slsReceiver
slsReceiver -t1955
# option 2
slsMultiReceiver 2012 2
# option 3
slsFrameSynchronizer 2012 2
Client Commands
-----------------
* Client commands to the receiver begin with **rx_** or **f_** (file commands).
* **rx_hostname** has to be the first command to the receiver so the client knows which receiver process to communicate with.
* Can use 'auto' for **udp_dstip** if using 1GbE interface or the :ref:`virtual simulators<Virtual Detector Servers>`.
To know more about detector receiver setup in the config file, please check out :ref:`the detector-receiver UDP configuration in the config file<detector udp header config>` and the :ref:`detector udp format<detector udp header>`.
The following are the different ways to establish contact using **rx_hostname** command.
.. code-block:: bash
# ---single module---
# default receiver port at 1954
rx_hostname xxx
# custom receiver port
rx_hostname xxx:1957 # option 1
rx_tcpport 1957 # option 2
rx_hostname xxx
# ---multi module---
# using increasing tcp ports
rx_tcpport 1955
rx_hostname xxx
# custom ports
rx_hostname xxx:1955+xxx:1958+ # option 1
0:rx_tcpport 1954 # option 2
1:rx_tcpport 1955
2:rx_tcpport 1956
rx_hostname xxx
# custom ports on different receiver machines
0:rx_tcpport 1954
0:rx_hostname xxx
1:rx_tcpport 1955
1:rx_hostname yyyrxr
| Example commands:
.. code-block:: bash
# to get a list of receiver commands (these dont include file commands)
sls_detector_get list | grep rx_
# some file commands are:
fwrite
foverwrite
findex
fpath
fname
fmaster
fformat
# to get help on a single commands
sls_detector_get -h rx_framescaught
Example of a config file using in-built receiver
.. code-block:: bash
# detector hostname
hostname bchip052+bchip053+
# udp destination port (receiver)
# sets increasing destination udp ports starting at 50004
udp_dstport 50004
# udp destination ip (receiver)
0:udp_dstip 10.0.1.100
1:udp_dstip 10.0.2.100
# udp source ip (same subnet as udp_dstip)
0:udp_srcip 10.0.1.184
1:udp_srcip 10.0.2.184
# udp destination mac - not required (picked up from udp_dstip)
#udp_dstmac 22:47:d5:48:ad:ef
# connects to receivers at increasing tcp port starting at 1954
rx_hostname mpc3434
# same as rx_hostname mpc3434:1954+mpc3434:1955+
Performance
-------------
Please refer to Receiver PC Tuning options and slsReceiver Tuning under `Troubleshooting <https://slsdetectorgroup.github.io/devdoc/troubleshooting.html>`_.
Using Callbacks
----------------
One can get a callback in the receiver for each frame to:
* manipulate the data that will be written to file, or
* disable file writing in slsReceiver and take care of the data for each call back
When handling callbacks, the control should be returned as soon as possible, to prevent packet loss from fifo being full.
**Example**
* `main cpp file <https://github.com/slsdetectorgroup/api-examples/blob/master/e4-receiver_callbacks.cpp>`_
* `cmake file <https://github.com/slsdetectorgroup/api-examples/blob/master/CMakeLists.txt>`_.
* how to install the slsDetectorPackage with cmake is provided :ref:`here <build from source using cmake>`.
* compile the example **e4-rxr** by:
.. code-block:: bash
cmake ../path/to/your/source -DCMAKE_PREFIX_PATH=/path/to/sls/install
make

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.. _sls receiver header format:
SLS Receiver Header Format
====================================================
It is 112 bytes and consists of:
* 48 bytes of the SLS Detector Header
* 64 bytes of packet mask
.. code-block:: cpp
typedef struct {
uint64_t frameNumber;
uint32_t expLength;
uint32_t packetNumber;
uint64_t detSpec1;
uint64_t timestamp;
uint16_t modId;
uint16_t row;
uint16_t column;
uint16_t detSpec2;
uint32_t detSpec3;
uint16_t detSpec4;
uint8_t detType;
uint8_t version;
} sls_detector_header;
struct sls_receiver_header {
sls_detector_header detHeader; /**< is the detector header */
sls_bitset packetsMask; /**< is the packets caught bit mask */
};
| **sls_detector_header** (described in :ref:`the current detector header <detector udp header>`)
| The **packetNumber** from detector UDP header is modified in **sls_receiver_header** to number of packets caught by receiver for that frame and the bit mask for each packet caught is the **packetsMask**. The packetsMask is a total of 512 bits due to the largest number of packets per frame among our detectors.
| For eg. Jungfrau has 128 packets per frame. If **packetNumeber** is 128, then this frame is complete. If it is 127 or less, it is a partial frame due to missing packets. If one would still like to use it, the **packetsMask** will specify which packet has been received or is missing.

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Troubleshooting
=================
If something is missing, don't hesitate to
open an issue at our `github repo issues
<https://github.com/slsdetectorgroup/slsDetectorPackage/issues>`_.
Common
------
1. Total Failure of Packet Delivery
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
#. Data cable plugged into the wrong interface on board (Jungfrau)
* Please ensure that the data cable is plugged into the rightmost interface (default for single interface). The inner one is disabled for PCB v1.0 and must be selected via command for PCB v2.0.
#. Link up and speed
* Check ethtool and find if Link Deteced:Yes and Speed is acceptable (>10k).
* Check to see if the 10G link is up (blue or red LED on board, close to SFP+). If not:
* Check transeiver and fibers are compatible (all MMF 850nm or all SMF 1030nm)
* Check fiber
* Check fiber polarity (if short range, unplug the link anywhere, and look at the light/dark pattern: dark has to mate with light)
* For Jungfrau, check if the blue sfp light is blinking rapidly (even when it is not sending data). If so, most likely the link is down and something is wrong with the board. If it connected to a switch, then you do not see it with the ethtool command if link is down. One option is to connect it directly to a pc to see if link is down.
* With nc, try "nc -u -p 50001 -l" in receiving pc, and from another pc try "echo hallo | nc -u 10.1.2.172 50001" to send something to the recieving pc interface to see if the link is up and see if the other nc console receives the hallo.
#. Detector is not acquiring (Not Eiger)
* Take an acquisition with many images and using the following steps instead of acquire:
.. code-block:: bash
sls_detector_put status start
# keep executing this command to see if the number of frames left keeps decreasing,
# which means the detector is acquiring.
sls_detector_get framesl
# If you are using multiple modules, the previous command can return -1 because each module will return different values. Then, check for a single module instead: sls_detector_get 0:framesl
#. Detector is not sending data (Except Eiger)
* Check the board to see if the green LED close to SFP is blinking (detector is sending data). If not, detector is not operated properly (period too short/long, no trigger in trigger mode) or misconfigured and needs reboot.
#. Power supply
* Check if power supply has enough current.
* For Jungfrau, refer to :ref:`Jungfrau Power Supply Troubleshooting<Jungfrau Troubleshooting Power Supply>`.
#. Ethernet interface not configured for Jumbo frames (10Gb)
* Ensure that the interfaces (on NIC and the switch) used in receiver pc have MTU 9000 (jumbo frames) enabled.
#. Check if 'rx packets' counter in 'ifconfig' do not increment for interface.
* If no, check switch configuration if present. Port counters of switch can also help to identify problem.
* If yes, but receiver software does not see it:
* Check no firewall (eg. firewalld) is present or add rules
.. code-block:: bash
# Stop and disable firewall
service firewalld stop
systemctl disable firewalld
# Check status
service firewalld status
* Check that selinux is disabled ( or add rules)
#. Source UDP IP in config file (Not Eiger)
* Ensure it is valid and does not end if 0 or 255. Also ensure that the source ip 'udp_srcip' is in the same subnet as destination ip 'udp_dstip' and the masking in the interface configuration ensures this rule.
* Eg. If interface IP is 102.10.10.110 and mask is 255.255.255.0, udp_srcip has to be 102.10.10.xxx (same subnet)
* Use ifconfig and route commands to verify etheret interface configuration
#. Netstat and netcat
* Try with netstat to see if its really listening to the right interface. Or netcat to see if you get packets.
#. Wireshark or Tcpdump
* Use one of these to confirm that you receive packets (with the right filtering ie. source and destination ports, ip).
2. Partial or Random Packet Loss (Performance)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.. note ::
The following suggestions are for convenience. Please do not follow blindly, research each parameter and adapt it to your system.
#. Receiver PC is not tuned for socket buffer size and input packet queue or other parameters.
* Refer to :ref:`Receiver PC Tuning<Receiver PC Tuning>`
#. Wiring
* Faulty wiring or connecting cable to incorrect interface.
#. Pinging the subnet (receiving only a few number of packets each time)
* If a switch is used between a receiver pc and detector instead of plugging the cables directly, one might have to ping any ip in the subnet of the Ethernet interface constantly so that it does not forget the ip during operation.
* Eg. if rx_udpip is 10.2.3.100, then ping constantly 10.2.3.xxx, where xxx is any ip other than 100.
* Using slsReceiver, you can use a command that does this for you:
.. code-block:: bash
# arping the interface in a separate thread every minute
sls_detector_put rx_arping 1
#. Only the slaves get no data
* Check trigger cabling and trigger configuration
* When you cannot stop Jungfrau slaves in sync mode, refer to :ref:`Cannot stop slaves<Jungfrau Troubleshooting Sync Slaves Cannot Stop>`.
.. _Receiver PC Tuning:
Receiver PC Tuning Options
^^^^^^^^^^^^^^^^^^^^^^^^^^
.. note ::
| xth1 is example interface name in the following examples.
| These settings are lost at pc reboot.
#. Increase maximum receive socket buffer size and socket input packet queue.
* Temporarily (until shut down)
.. code-block:: bash
# check size
sysctl -a | grep rmem
sysctl -a | grep backlog
# set max and default (use 1Gb for Jungfrau and 100Mb for others)
sysctl net.core.rmem_max=$((100*1024*1024))
sysctl net.core.rmem_default=$((100*1024*1024))
sysctl net.core.netdev_max_backlog=250000
* Permanently
.. code-block:: bash
# edit /etc/sysctl.conf file
# set max and default (use 1Gb for Jungfrau and 100Mb for others)
net.core.rmem_max = 104857600
net.core.rmem_default= 104857600
net.core.netdev_max_backlog = 250000
# save file and run the following
sysctl -p
.. note ::
This is the most basic setting, which is sometimes more than enough.
#. For 10Gb,
* MTU must be set up to 9000 for jumbo frames on detector, switch and server NIC
* Set up static MAC address tables with separated VLANs
#. Write to memory if not a large disk and pc not fast enough.
.. code-block:: bash
mount -t tmpfs none /ramdisk_folder
# or
mount -t tmpfs none /mnt/ramdisk -o size=10G
# check how many GB memory you can allocate, to avoid swapping otherwise
#. Modify ethtool settings.
* rx ring parameters
.. code-block:: bash
# check
ethtool -g xth1
# set to max value in your pc settings
ethtool -G xth1 rx 4096
* coalesce settings (might not always work)
.. code-block:: bash
# check
ethtool -c xth1
# enable adaptive xoalescence parameters
ethtool -C xth1 adaptive-rx on
# set to max value in your pc settings
ethtool -C xth1 rx-usecs 100
* pause parameters
.. code-block:: bash
# check
ethtool -a xth1
# set to max value in your pc settings
ethtool -A xth1 rx on
* generic receiver offload (might not always work)
.. code-block:: bash
# check
ethtool -k xth1
# enable generic receiver offload
ethtool -K xth1 gro
#. Disable power saving in CPU frequency scaling and set system to performance
* Check current policy (default might be powersave or schedutil)
.. code-block:: bash
# check current active governor and range of cpu freq policy
cpupower frequency-info --policy
# list all available governors for this kernel
cpupower frequency-info --governors
* Temporarily (until shut down)
.. code-block:: bash
# set to performance
sudo cpupower frequency-set -g performance
# or
cpufreq-info
for i in ‘seq 0 7‘; do cpufreq-set -c $i -g performance; done
* Permanently
.. code-block:: bash
# edit /etc/sysconfig/cpupower to preference
# enable or disable permanently
sudo systemctl enable cpupower
#. Give user speicific user scheduling privileges.
.. code-block:: bash
# edit /etc/security/limits.conf
# add following line or similar depending on your distribution
username rtprio 99
.. note ::
This is also set if slsReceiver is run as root user.
#. Some more advanced options:
.. warning ::
Please do not try if you do not understand
#. reduce the number of queue per NIC to the number of expected streams: ethtool -L xth0 combined 2
#. assign each queue to its stream: ethtool -U xth0 flow-type tcp4 dst-port 50004 action 1
#. assign to each queue (IRQ) one CPU on the right socket: echo "3"> /proc/irq/47/smp_affinity_list #change the numbers looking at /proc/interrupts
#. disable irqbalance service
#. Be sure that the switch knows the receiver mac address. Most switches reset the mac lists every few minutes, and since the receiver only receives, there is not a periodic refresh of the mac list. In this case, one can set a fixed mac list in the switch, or setup some kind of script arping or pinging out from that interface (will be available in 7.0.0).
#. assign the receiver numa node (also with -m) to the socket where the NIC is attached. To know it, cat /sys/class/net/ethxxx/device/numa_node
#. ensure file system performance can handle sustained high data rate:
* One can use dd:
.. code-block:: bash
dd if=/dev/zero of=/testpath/testfile bs=1M count=100000
* Or better fio (which needs to be installed)
.. code-block:: bash
fio --name=global –directory=/testpath/ --rw=write --ioengine=libaio --direct=0 --size=200G -- numjobs=2 --iodepth=1 --bs=1M –name=job
slsReceiver Tuning
^^^^^^^^^^^^^^^^^^
#. Starting receiver as root to have scheduling privileges.
#. For 10g, enable flow control
.. code-block:: bash
sls_detector_put flowcontrol10g 1
#. Increase slsReceiver ring buffer depth
This can be tuned depending on the number of receivers (modules) and memory available.
.. code-block:: bash
# sugggested not to use more than half memory of CPU socket in case of NUMA systems) for this
sls_detector_get rx_fifodepth
# sets number of frames in fifo to 1024 ~1GB per receiver. Default is 2500
sls_detector_put rx_fifodepth 1024
#. Increase number of frames per file
This can reduce time taken to open and close files.
.. code-block:: bash
sls_detector_get rx_framesperfile
sls_detector_put rx_framesperfile 20000
# writes all frames into a single file
sls_detector_put rx_framesperfile 0
#. Disable file write
This can ensure it is not the file system performance hampering high date rate.
.. code-block:: bash
sls_detector_put fwrite 0
Shared memory error
^^^^^^^^^^^^^^^^^^^
For errors due to access or size, use any of the following suggestions.
#. Delete shared memory files and try again
#. Use environment variable to use a different shared memory ending in jfxx
.. code-block:: bash
# shared memory ending in jfxx
export SLSDETNAME=jfxx
#. USe a different multi shared memory ID
.. code-block:: bash
sls_detector_put 2-config xxxx.config
# or
sls_detector_put 2-hostname bchipxxx
To list all shared memory files of sls detector package.
.. code-block:: bash
ll /dev/shm/slsDetectorPackage*
-rw-------. 1 l_d l_d 136 Oct 1 11:42 /dev/shm/slsDetectorPackage_multi_0
-rw-------. 1 l_d l_d 3476 Oct 1 11:42 /dev/shm/slsDetectorPackage_multi_0_sls_0
-rw-------. 1 l_d l_d 3476 Oct 1 11:42 /dev/shm/slsDetectorPackage_multi_0_sls_1
Cannot connect to detector
^^^^^^^^^^^^^^^^^^^^^^^^^^
Ensure both control and stop servers are running on the detector.
.. code-block:: bash
ps -ef | grep jungfrauDetectorServer*
Cannot connect to receiver
^^^^^^^^^^^^^^^^^^^^^^^^^^
Start receiver before running a client command that needs to communicate with receiver.
Receiver: cannot bind socket
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
#. slsReceiver or slsMultiReceiver is already open somewhere.
* Kill it and restart it.
#. Tcp port is in use by another application.
* Start Receiver with a different tcp port and adjust it config file
.. code-block:: bash
# restart receiver with different port
slsReceiver -t1980
# adjust in config file
rx_hostname pcxxxx:1980
.. _common troubleshooting multi module data:
Cannot get multi module data
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Possible causes could be the following:
#. Network
* If you have a direct connection, check to see if the network cables are connected correctly to corresponding interfaces on the PC side. Check also the network configuration and that the detectors and receivers are in the corresponding subnet.
#. Power Supply
* Check power supply current limit.
* For Jungfrau, refer to :ref:`Jungfrau Power Supply Troubleshooting<Jungfrau Troubleshooting Power Supply>`.
Cannot ping module (Nios)
^^^^^^^^^^^^^^^^^^^^^^^^^
If you executed "reboot" command on the board, you cannot ping it anymore unless you power cycle. To reboot the controller, please use the software command ("rebootcontroller"), which talks to the microcontroller.
Gotthard2
---------
Cannot get data without a module attached
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
You cannot get data without a module attached as a specific pin is floating. Attach module to get data.
Gotthard
----------
Missing first frame or next frame after a delay
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Connect the data link from the Module directly to receiver pc or to a private network.
Mythen3
--------
Detector status is waiting even in auto timing mode
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Check if the control board or the flat band cable is connected properly. If not, connect them properly and try again.
Jungfrau
---------
Temperature event occured
^^^^^^^^^^^^^^^^^^^^^^^^^
This will occur only if:
* temp_threshold (threshold temperature) has been set to a value
* temp_control (temperature control) set to 1
* and the temperature overshooted the threshold temperature.
**Consequence**
* sls_detector_get temp_event will give 1 # temperature event occured
* the chip will be powered off
**Solution**
* Even after fixing the cooling, any subsequent powerchip command will fail unless the temperature event has been cleared.
* Clear the temperature event
.. code-block:: bash
# gives the current chip power status (zero currently as chip powered off)
sls_detector_get powerchip
# clear temperature event
sls_detector_put temp_event 0
# power on the chip
sls_detector_put powerchip 1
.. _Jungfrau Troubleshooting Power Supply:
Cannot get multi module data
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
#. Check :ref:`Common Multi Module Troubleshooting<common troubleshooting multi module data>`
#. Power Supply
* Jungfrau needs a ~4A per module for a short time at startup. If not, it reboots misconfigured.
* Comment out this line in the config file: powerchip 1
* Powering on the chip increases the power consumption by a considerable amount. If commenting out this line aids in getting data (strange data due to powered off chip), then it could be the power supply current limit. Fix it (possibly to 8A current limit) and uncomment the powerchip line back in config file.
.. _Jungfrau Troubleshooting Sync Slaves Cannot Stop:
Cannot stop slaves in sync mode
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
#. If cabling is accessible, ensure termination board and flatband cable between the masters and the slaves are connnected properly. Then try to stop.
#. If cabling is inaccessible, unsync first so that the slaves can get the stop directly from the client using the command. Then, don't use sync mode until the cabling is fixed.
.. code-block:: bash
# unsync, slaves command will fail as it is still in waiting state
sls_detector_put sync 0
# stop should now be successful as master does not determine the stop anymore
sls_detector_put stop

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TypeTraits
==============
Template meta functions in the same spirit as type_traits
from the standard library.
.. doxygenfile:: TypeTraits.h

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.. _detector udp header config:
Config file
============
Commands to configure the UDP in the config file:
.. note ::
These command are recommended to be placed before "rx_hostname" if it is used.
Source Port
-----------
Hardcoded in detector server, starting at 32410.
udp_srcip - Source IP
---------------------
IP address of detector UDP interface to send packets from. Do not use for Eiger 1Gb interface (uses its hardware IP). For others, must be in the same subnet as **udp_dstip**.
udp_srcmac - Source MAC
-----------------------
MAC address of detector UDP interface to send packets from. Do not use for Eiger (uses hardware mac). For others, it is not necessary, but can help for switch and debugging to put unique values for each module.
udp_dstport - Desintation Port
-------------------------------
Port in receiver pc to listen to packets from the detector.
udp_dstip - Destination IP
--------------------------
IP address of interface in receiver pc to listen to packets from detector. If **auto** is used (only when using slsReceiver/ slsMultiReceiver), the IP of **rx_hostname** is picked up.
udp_dstmac - Destination MAC
----------------------------
MAC address of interface in receiver pc to list to packets from detector. Only required when using custom receiver, else slsReceiver/slsMultiReceiver picks it up from **udp_dstip**.

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.. _detector specific fields:
Detector Specific Fields
========================
Please check out :ref:`the current detector header <detector udp header>` to see
where the detector specific fields are placed.
Eiger
------
.. table:: Detector Specific Field
+----------+------------------------------+
| expLength| Sub Frame Number |
+----------+------------------------------+
| detSpec1 | 0x0 |
+----------+------------------------------+
| detSpec2 | 0x0 |
+----------+------------------------------+
| detSpec3 | e14a |
+----------+------------------------------+
| detSpec4 | Round Robin Interface Number |
+----------+------------------------------+
Jungfrau
---------
.. table:: Detector Specific Field
+----------+------------------------------+
| detSpec1 | Bunch Id [#]_ |
+----------+------------------------------+
| detSpec2 | 0 |
+----------+------------------------------+
| detSpec3 | DAQ info |
+----------+------------------------------+
| detSpec4 | 0 |
+----------+------------------------------+
.. table:: DAQ Info Field
+----------+--------------------+----------------------------------------------+
| Bits | Name | Description |
+----------+--------------------+-----+----------------------------------------+
| 0 | High gain | 1 | High Gain enabled |
| | +-----+----------------------------------------+
| | | 0 | High Gain disabled |
+----------+--------------------+-----+----------------------------------------+
| 1 | Fix gain stage 1 | 1 | Gain stage 1 fixed. The switch that |
| | | | selects the gains stage 1 is active all|
| | | | the time. |
| | +-----+----------------------------------------+
| | | 0 | Gain stage 1 unset. The switch that |
| | | | selects the gains stage 1 is inactive |
| | | | all the time. |
+----------+--------------------+-----+----------------------------------------+
| 2 | Fix gain stage 2 | 1 | Gain stage 2 fixed. The switch that |
| | | | selects the gains stage 2 is active all|
| | | | the time. |
| | +-----+----------------------------------------+
| | | 0 | Gain stage 2 unset. The switch that |
| | | | selects the gains stage 2 is inactive |
| | | | all the time. |
+----------+--------------------+-----+----------------------------------------+
| 4 | Comparator reset | 1 | On-chip comparator in reset state. |
| | | | Dynamic-gain switching is therefore |
| | | | disabled. |
| | +-----+----------------------------------------+
| | | 0 | On-chip comparator active. |
+----------+--------------------+-----+-----+-----+----------------------------+
| 7-5 | Jungfrau chip |Bit 7|Bit 6|Bit 5| Description |
| | version +-----+-----+-----+----------------------------+
| | | 0 | 0 | 0 | v1.0 |
| | +-----+-----+-----+----------------------------+
| | | 0 | 0 | 1 | v1.1 |
| | +-----+-----+-----+----------------------------+
| | | 0 | 1 | X | Reserved |
| | +-----+-----+-----+----------------------------+
| | | 1 | X | X | Reserved |
+----------+--------------------+-----+-----+-----+----------------------------+
| 11-8 | Storage cell select|Storage cell used for this exposure. This |
| | |field defines the storage cell that was used |
| | |to acquire the data of this frame |
+----------+--------------------+-----+----------------------------------------+
| 12 | Force switching | 1 | Forced switching to gain stage 1 at the|
| | to gain stage 1 | | start of the exposure period. |
| | +-----+----------------------------------------+
| | | 0 | Disabled forced gain switching to gain |
| | | | stage 1. Dynamic gain switching |
| | | | conditions apply. |
+----------+--------------------+-----+----------------------------------------+
| 13 | Force switching | 1 | Forced switching to gain stage 2 at the|
| | to gain stage 2 | | start of the exposure period. |
| | +-----+----------------------------------------+
| | | 0 | Disabled forced gain switching to gain |
| | | | stage 2. Dynamic gain switching |
| | | | conditions apply. |
+----------+--------------------+-----+-----+-----+----------------------------+
| 23-16 | 10-Gigabit event |The 8-bit event code contains value of the |
| | code |event received over the 10 GbE interface by |
| | |JUNGFRAU detector at the moment of the frame |
| | |acquisition. |
+----------+--------------------+-----+----------------------------------------+
| 31 | External input flag| 1 | External input flag detected in the |
| | | | last exposure. |
| | +-----+----------------------------------------+
| | | 0 | External input flag not detected in the|
| | | | last exposure. |
+----------+--------------------+-----+----------------------------------------+
Gotthard2
----------
.. table:: Detector Specific Field
+----------+------------------------------+
| detSpec1 | Train Id [#]_ |
+----------+------------------------------+
| detSpec2 | Bunch Id [#]_ |
+----------+------------------------------+
| detSpec3 | 0 |
+----------+------------------------------+
| detSpec4 | 0 |
+----------+------------------------------+
Mythen3
----------
.. table:: Detector Specific Field
+----------+------------------------------+
| detSpec1 | 0 |
+----------+------------------------------+
| detSpec2 | 0 |
+----------+------------------------------+
| detSpec3 | 0 |
+----------+------------------------------+
| detSpec4 | 0 |
+----------+------------------------------+
.. [#] **Bunch Id**: bunch identification number received by the detector at the moment of frame acquisition.
.. [#] **Train Id**: train identification number received by the detector at the moment of frame acquisition.
.. [#] **Bunch Id**: bunch identification number to identify every single exposure during a burst acquisition.

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.. _detector udp header:
Format
=======
The UDP data format for the packets consist of a common header of 48 bytes for all detectors, followed by the data for that one packet.
Current Version
---------------------------
**v2.0 (slsDetectorPackage v7.0.0+)**
.. code-block:: cpp
typedef struct {
uint64_t frameNumber;
uint32_t expLength;
uint32_t packetNumber;
uint64_t detSpec1;
uint64_t timestamp;
uint16_t modId;
uint16_t row;
uint16_t column;
uint16_t detSpec2;
uint32_t detSpec3;
uint16_t detSpec4;
uint8_t detType;
uint8_t version;
} sls_detector_header;
.. table:: <---------------------------------------------------- 8 bytes per row --------------------------------------------->
:align: center
:widths: 30,30,30,15,15
+---------------------------------------------------------------+
| frameNumber |
+-------------------------------+-------------------------------+
| expLength | packetNumber |
+-------------------------------+-------------------------------+
| **detSpec1** |
+---------------------------------------------------------------+
| timestamp |
+---------------+---------------+---------------+---------------+
| modId | row | column | **detSpec2** |
+---------------+---------------+---------------+-------+-------+
| **detSpec3** | **detSpec4** |detType|version|
+-------------------------------+---------------+-------+-------+
.. note ::
Since there is no difference in the format of the UDP header from the detector
from the previous version (v2.0), the version number stays the same.
Only the struture member names have changed in sls_detector_defs.h
Description
------------
* **Detector specific field** descriptions are found :ref:`here<detector specific fields>`.
* **frameNumber**: framenumber to which the current packet belongs to.
* **expLength**: measured exposure time of the frame in tenths of microsecond. It is instead the sub frame number for Eiger.
* **packetNumber**: packet number of the frame to which the current data belongs to.
* **timestamp**: time measured at the start of frame exposure since the start of the current measurement. It is expressed in tenths of microsecond.
* **modId**: module ID picked up from det_id_[detector type].txt on the detector cpu.
* **row**: row position of the module in the detector system. It is calculated by the order of the module in hostname command, as well as the detsize command. The modules are stacked row by row until they reach the y-axis limit set by detsize (if specified). Then, stacking continues in the next column and so on.
* **column**: column position of the module in the detector system. It is calculated by the order of the module in hostname command, as well as the detsize command. The modules are stacked row by row until they reach the y-axis limit set by detsize (if specified). Then, stacking continues in the next column and so on.
* **detType**: detector type from enum of detectorType in the package.
* **version**: current version of the detector header (0x2).
.. _detector enum:
Detector Enum
--------------
================ ========
Detector Type Value
================ ========
GENERIC 0
EIGER 1
GOTTHARD 2
JUNGFRAU 3
CHIPTESTBOARD 4
MOENCH 5
MYTHEN3 6
GOTTHARD2 7
================ ========
Previous Versions
-----------------
**v2.0 (Package v4.0.0 - 6.x.x)**
.. table:: <---------------------------------------------------- 8 bytes ---------------------------------------------------->
:align: center
:widths: 30,30,30,15,15
+---------------------------------------------------------------+
| frameNumber |
+-------------------------------+-------------------------------+
| expLength | packetNumber |
+-------------------------------+-------------------------------+
| bunchid |
+---------------------------------------------------------------+
| timestamp |
+---------------+---------------+---------------+---------------+
| modId | **row** | **column** | **reserved** |
+---------------+---------------+---------------+-------+-------+
| debug | roundRNumber |detType|version|
+-------------------------------+---------------+-------+-------+
**v1.0 (Package v3.0.0 - 3.1.5)**
.. table:: <---------------------------------------------------- 8 bytes ---------------------------------------------------->
:align: center
:widths: 30,30,30,15,15
+---------------------------------------------------------------+
| frameNumber |
+-------------------------------+-------------------------------+
| expLength | packetNumber |
+-------------------------------+-------------------------------+
| bunchid |
+---------------------------------------------------------------+
| timestamp |
+---------------+---------------+---------------+---------------+
| modId | xCoord | yCoord | zCoord |
+---------------+---------------+---------------+-------+-------+
| debug | roundRNumber |detType|version|
+-------------------------------+---------------+-------+-------+

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.. _Virtual Detector Servers:
Simulators
===========
Compilation
-----------
* Using CMake, turn on the option
.. code-block:: bash
SLS_USE_SIMULATOR=ON
* Using cmk.sh script,
.. code-block:: bash
./cmk.sh -bsj9 # option -s is for simulator
Binaries
^^^^^^^^
.. code-block:: bash
eigerDetectorServer_virtual
jungfrauDetectorServer_virtual
gotthardDetectorServer_virtual
gotthard2DetectorServer_virtual
mythen3DetectorServer_virtual
moenchDetectorServer_virtual
ctbDetectorServer_virtual
Arguments
---------
The arguments are the same as the :ref:`normal server arguments<Detector Server Arguments>`.
When using multiple modules, use different ports for each virtual server.
.. code-block:: bash
# will start control server at port 1912 and stop server at port 1913
jungfrauDetectorServer --port 1912 &
# will start second control server at port 1914 and stop server at port 1915
jungfrauDetectorServer --port 1914 &
Client
------
.. code-block:: bash
# hostname should include the port (if not default)
sls_detector_put hostname localhost:1912+localhost:1914+
# or use virtual command, instead of hostname
# connects to 2 servers at localhost
# (control servers: 1912, 1914; stop servers: 1913, 1915)
sls_detector_put virtual 2 1912
Use the same in the config file.
Detector API has a method 'isVirtualDetectorServer' to check if on-board detector server is virtual.
Sample Config file
^^^^^^^^^^^^^^^^^^
There are sample config files for each detector in slsDetectorPackage/examples folder.
For a Single Module (Basic)
.. code-block:: bash
hostname localhost
rx_hostname localhost
udp_dstip auto
For a Single Module (With Options)
.. code-block:: bash
# connects to control port 1912
hostname localhost:1912+
# connects to receiver at ports 2012
rx_hostname mpc1922:2012+
# sets destination udp ports (not needed, default is 50001)
udp_dstport 50012
# source udp ips must be same subnet at destintaion udp ips
# takes the same ip as hostname
udp_srcip auto
# destination udp ip picked up from rx_hostname (if auto)
udp_dstip auto
# set file path
fpath /tmp
For Multiple Modules
.. code-block:: bash
# connects to control ports 1912, 1914 and stop ports 1913, 1915
virtual 2 1912
# or hostname localhost:1912+localhost:1914+
# increasing receiver tcp ports (multi detector command)
rx_tcpport 2012
# connects to reciever at port 2012 and 2013
rx_hostname mpc1922
# sets increasing destination udp ports
udp_dstport 50012
# source udp ips must be same subnet at destintaion udp ips
0:udp_srcip 192.168.1.112
1:udp_srcip 192.168.1.114
# destination udp ip picked up from rx_hostname (if auto)
udp_dstip auto
# set file path
fpath /tmp
Receivers
----------
Same as if you would use an actual detector
For a Single Module
.. code-block:: bash
slsReceiver -t2012
For Multiple Modules
.. code-block:: bash
# slsMultiReceiver [starting port] [number of receivers] [print each frame header for debugging]
slsMultiReceiver 2012 2 0
Gui
----
| Same as if you would use an actual detector.
| Compile with SLS_USE_GUI=ON in cmake or -g option in cmk.sh script.
.. code-block:: bash
slsDetectorGui
Limitations
-----------
#. Data coming out of virtual server is fake.
#. A stop will stop the virtual acquisition only at the start of every new frame.
#. Triggers are counted as number of virtual frames. trigger command to send a software trigger (Mythen3 & Eiger) is not implemented in virtual server.
#. firmware version and serial number will give 0.

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ZMQ: Json Header Format
========================
**Change in field names from slsDetectorPackage v6.x.x to v7.0.0**
* detSpec1 <- bunchId
* detSpec2 <- reserved
* detSpec3 <- debug
* detSpec4 <- roundRNumber
**Format**
.. code-block:: bash
{
"jsonversion": unsigned int,
"bitmode": unsigned int,
"fileIndex": unsigned long int,
"detshape": [
unsigned int,
unsigned int
],
"shape": [
unsigned int,
unsigned int
],
"size": unsigned int,
"acqIndex": unsigned long int,
"frameIndex": unsigned long int,
"progress": double,
"fname": string,
"data": unsigned int,
"completeImage": unsigned int,
"frameNumber": unsigned long long int,
"expLength": unsigned int,
"packetNumber": unsigned int,
"detSpec1": unsigned long int,
"timestamp": unsigned long int,
"modId": unsigned int,
"row": unsigned int,
"column": unsigned int,
"detSpec2": unsigned int,
"detSpec3": unsigned int,
"detSpec4": unsigned int,
"detType": unsigned int,
"version": unsigned int,
"flipRows": unsigned int,
"quad": unsigned int,
"addJsonHeader": {
string : string
}
}
+--------------+----------------------------------------------+
| Field | Description |
+--------------+----------------------------------------------+
| jsonversion | Version of the json header. |
| | Value at 4 for v6.x.x and v7.x.x |
+--------------+----------------------------------------------+
| bitmode | Bits per pixel [4|8|16|32] |
+--------------+----------------------------------------------+
| fileIndex | Current file acquisition index |
+--------------+----------------------------------------------+
| detshape | Geometry of the entire detector |
+--------------+----------------------------------------------+
| shape | Geometry of the current port streamed out |
+--------------+----------------------------------------------+
| size | Size of image of current port in bytesout |
+--------------+----------------------------------------------+
| acqIndex | Frame number from the detector (redundant) |
+--------------+----------------------------------------------+
| frameIndex | Frame number of current acquisition |
| | (Starting at 0) |
+--------------+----------------------------------------------+
| progress | Progress of current acquisition in % |
+--------------+----------------------------------------------+
| fname | Current file name |
+--------------+----------------------------------------------+
| data | 1 if there is data following |
| | 0 if dummy header |
+--------------+----------------------------------------------+
| completeImage| 1 if no missing packets for this frame |
| | in this port, else 0 |
+--------------+----------------------------------------------+
| frameNumber | Frame number |
| | [From detector udp header] |
+--------------+----------------------------------------------+
| expLength | subframe number (32 bit eiger) |
| | or real time exposure time in 100ns (others) |
| | [From detector udp header] |
+--------------+----------------------------------------------+
| packetNumber | Number of packets caught for that frame |
+--------------+----------------------------------------------+
| detSpec1 | See :ref:`here<Detector Specific Fields>` |
| | [From detector udp header] |
+--------------+----------------------------------------------+
| timestamp | Timestamp with 10 MHz clock |
| | [From detector udp header] |
+--------------+----------------------------------------------+
| modId | Module Id |
| | [From detector udp header] |
+--------------+----------------------------------------------+
| row | Row number in detector |
| | [From detector udp header] |
+--------------+----------------------------------------------+
| column | Column number in detector |
| | [From detector udp header] |
+--------------+----------------------------------------------+
| detSpec2 | See :ref:`here<Detector Specific Fields>` |
| | [From detector udp header] |
+--------------+----------------------------------------------+
| detSpec3 | See :ref:`here<Detector Specific Fields>` |
| | [From detector udp header] |
+--------------+----------------------------------------------+
| detSpec4 | See :ref:`here<Detector Specific Fields>` |
| | [From detector udp header] |
+--------------+----------------------------------------------+
| detType | Detector type enum |
| detSpec3 | See :ref:`Detector enum<detector enum>` |
| | [From detector udp header] |
+--------------+----------------------------------------------+
| version | Detector header version. At 2 |
| | [From detector udp header] |
+--------------+----------------------------------------------+
| flipRows | 1 if rows should be flipped. |
| | Usually for Eiger bottom. |
+--------------+----------------------------------------------+
| quad | 1 if its an Eiger quad. |
+--------------+----------------------------------------------+
| addJsonHeader| Optional custom parameters that is required |
| | for processing code. |
+--------------+----------------------------------------------+