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Read rx_ROI from json master

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This commit is contained in:
hinger_v
2023-08-03 18:25:43 +02:00
parent 558c2de85c
commit f90a9b7520
5 changed files with 367 additions and 143 deletions
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122
slsDetectorCalibration/jungfrauExecutables/jungfrauRawDataProcess_filetxt.cpp
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@ -41,6 +41,9 @@
#include <ctime>
#include <fmt/core.h>
#include <nlohmann/json.hpp>
using json = nlohmann::json;
std::string getRootString( const std::string& filepath ) {
size_t pos1;
@ -71,11 +74,11 @@ std::string createFileName( const std::string& dir, const std::string& fprefix="
//NOTE THAT THE DATA FILES HAVE TO BE IN THE RIGHT ORDER SO THAT PEDESTAL TRACKING WORKS!
int main(int argc, char *argv[]) {
if (argc < 10) {
if (argc < 11) {
std::cout
<< "Usage is " << argv[0]
<< " filestxt outdir [pedfile (raw or tiff)] [xmin xmax ymin ymax] "
"[threshold] [nframes] "
<< " filestxt outdir [json master] [pedfile (raw or tiff)] [xmin xmax ymin ymax] "
"[threshold] [nframes] [optional: bool read rxroi from data file header]"
"NOTE THAT THE DATA FILES HAVE TO BE IN THE RIGHT ORDER SO THAT PEDESTAL TRACKING WORKS! "
<< std::endl;
std::cout
@ -105,19 +108,24 @@ int main(int argc, char *argv[]) {
const std::string txtfilename(argv[1]);
const std::string outdir(argv[2]);
const std::string pedfilename(argv[3]);
const std::string jsonmastername(argv[3]);
const std::string pedfilename(argv[4]);
int xmin = atoi(argv[4]);
int xmax = atoi(argv[5]);
int ymin = atoi(argv[6]);
int ymax = atoi(argv[7]);
int xmin = atoi(argv[5]);
int xmax = atoi(argv[6]);
int ymin = atoi(argv[7]);
int ymax = atoi(argv[8]);
double thr = 0;
double thr1 = 1;
thr = atof(argv[8]);
thr = atof(argv[9]);
int nframes = 0;
nframes = atoi(argv[9]);
nframes = atoi(argv[10]);
bool readrxroifromdatafile = false;
if (argc > 11)
readrxroifromdatafile = atoi(argv[11]);
//Get vector of filenames from input txt-file
std::vector<std::string> filenames{};
@ -146,7 +154,29 @@ int main(int argc, char *argv[]) {
}
std::cout << "###############" << std::endl;
// Receiver ROI
uint16_t rxroi_xmin = 0;
uint16_t rxroi_xmax = 0;
uint16_t rxroi_ymin = 0;
uint16_t rxroi_ymax = 0;
{ //protective scope so ifstream gets destroyed properly
std::ifstream masterfile(jsonmastername); //, ios::in | ios::binary);
if (masterfile.is_open()) {
json j;
masterfile >> j;
rxroi_xmin = j["Receiver Roi"]["xmin"];
rxroi_xmax = j["Receiver Roi"]["xmax"];
rxroi_ymin = j["Receiver Roi"]["ymin"];
rxroi_ymax = j["Receiver Roi"]["ymax"];
masterfile.close();
} else
std::cout << "Could not open master file " << jsonmastername << std::endl;
}
// Define decoders...
#if !defined JFSTRX && !defined JFSTRXOLD && !defined JFSTRXCHIP1 && \
!defined JFSTRXCHIP6
@ -162,48 +192,44 @@ int main(int argc, char *argv[]) {
#ifdef JFSTRX
cout << "Jungfrau strixel full module readout" << endl;
// ROI
uint16_t xxmin = 0;
uint16_t xxmax = 0;
uint16_t yymin = 0;
uint16_t yymax = 0;
#ifndef ALDO
{ //THIS SCOPE IS IMPORTANT! (To ensure proper destruction of ifstream)
using header = sls::defs::sls_receiver_header;
// check if there is a roi in the header
typedef struct {
uint16_t xmin;
uint16_t xmax;
uint16_t ymin;
uint16_t ymax;
} receiverRoi_compact;
receiverRoi_compact croi;
//std::string filepath(argv[9]); //This is a problem if the input files have different ROIs!
std::cout << "Reading header of file " << filenames[0] << " to check for ROI "
<< std::endl;
ifstream firstfile(filenames[0], ios::in | ios::binary);
if (firstfile.is_open()) {
header hbuffer;
std::cout << "sizeof(header) = " << sizeof(header) << std::endl;
if (firstfile.read((char *)&hbuffer, sizeof(header))) {
memcpy(&croi, &hbuffer.detHeader.detSpec1, 8);
std::cout << "Read ROI [" << croi.xmin << ", " << croi.xmax << ", "
<< croi.ymin << ", " << croi.ymax << "]" << std::endl;
xxmin = croi.xmin;
xxmax = croi.xmax;
yymin = croi.ymin;
yymax = croi.ymax;
} else
std::cout << "reading error" << std::endl;
firstfile.close();
} else
std::cout << "Could not open " << filenames[0] << " for reading " << std::endl;
} //end of protective scope
if (readrxroifromdatafile)
{ //THIS SCOPE IS IMPORTANT! (To ensure proper destruction of ifstream)
using header = sls::defs::sls_receiver_header;
// check if there is a roi in the header
typedef struct {
uint16_t xmin;
uint16_t xmax;
uint16_t ymin;
uint16_t ymax;
} receiverRoi_compact;
receiverRoi_compact croi;
//std::string filepath(argv[9]); //This is a problem if the input files have different ROIs!
std::cout << "Reading header of file " << filenames[0] << " to check for ROI "
<< std::endl;
std::ifstream firstfile( filenames[0], ios::in | ios::binary);
if (firstfile.is_open()) {
header hbuffer;
std::cout << "sizeof(header) = " << sizeof(header) << std::endl;
if (firstfile.read((char *)&hbuffer, sizeof(header))) {
memcpy(&croi, &hbuffer.detHeader.detSpec1, 8);
std::cout << "Read ROI [" << croi.xmin << ", " << croi.xmax << ", "
<< croi.ymin << ", " << croi.ymax << "]" << std::endl;
rxroi_xmin = croi.xmin;
rxroi_xmax = croi.xmax;
rxroi_ymin = croi.ymin;
rxroi_ymax = croi.ymax;
} else
std::cout << "reading error" << std::endl;
firstfile.close();
} else
std::cout << "Could not open " << filenames[0] << " for reading " << std::endl;
} //end of protective scope
#endif
jungfrauLGADStrixelsData *decoder =
new jungfrauLGADStrixelsData(xxmin, xxmax, yymin, yymax);
new jungfrauLGADStrixelsData(rxroi_xmin, rxroi_xmax, rxroi_ymin, rxroi_ymax);
int nx = 1024 / 3, ny = 512 * 5;
#endif
#ifdef JFSTRXCHIP1