mirror of
https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2025-05-06 04:40:02 +02:00
converted to c++
This commit is contained in:
Dhanya Maliakal
parent
d3200dc76f
commit
f8b34a16dd
@ -26,7 +26,11 @@
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#include <semaphore.h>
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#ifdef HDF5C
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#include "hdf5.h"
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#include "H5Cpp.h"
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//#ifndef H5_NO_NAMESPACE
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using namespace H5;
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//#endif
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//#include "hdf5.h"
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#endif
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/**
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@ -639,9 +643,9 @@ private:
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/** File Descriptor */
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FILE *sfilefd[MAX_NUMBER_OF_WRITER_THREADS];
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#ifdef HDF5C
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H5File *hdf5_fileId[MAX_NUMBER_OF_WRITER_THREADS];
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DataSpace *hdf5_dataspaceId[MAX_NUMBER_OF_WRITER_THREADS];
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DataSet *hdf5_datasetId[MAX_NUMBER_OF_WRITER_THREADS];
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H5File *hdf5_fileId[MAX_NUMBER_OF_WRITER_THREADS];
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hid_t hdf5_datatype;
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/*hid_t hdf5fileId[MAX_NUMBER_OF_WRITER_THREADS];
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@ -21,12 +21,6 @@
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#include <zmq.h> //zmq
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#include <sstream>
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#ifdef HDF5C
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#include "H5Cpp.h"
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#ifndef H5_NO_NAMESPACE
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using namespace H5;
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#endif
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#endif
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using namespace std;
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@ -160,13 +154,13 @@ void UDPStandardImplementation::initializeMembers(){
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strcpy(fileHeader[i],"");
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sfilefd[i] = 0;
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#ifdef HDF5C
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hdf5_fileId[i] = 0;
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hdf5_dataspaceId[i] = 0;
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hdf5_datasetId[i] = 0;
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hdf5_fileId[i] = 0;
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#endif
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}
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#ifdef HDF5C
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hdf5DataType = H5T_STD_U16LE;
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hdf5_datatype = H5T_STD_U16LE;
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#endif
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maxFramesPerFile = 0;
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fileCreateSuccess = false;
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@ -654,9 +648,9 @@ int UDPStandardImplementation::setDynamicRange(const uint32_t i){
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#ifdef HDF5C
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switch(dynamicRange){
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case 4:
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case 8: hdf5DataType = H5T_STD_U8LE; break;
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case 16: hdf5DataType = H5T_STD_U16LE; break;
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case 32: hdf5DataType = H5T_STD_U32LE; break;
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case 8: hdf5_datatype = H5T_STD_U8LE; break;
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case 16: hdf5_datatype = H5T_STD_U16LE; break;
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case 32: hdf5_datatype = H5T_STD_U32LE; break;
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default: cprintf(BG_RED,"unknown dynamic range\n");
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}
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#endif
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@ -1005,14 +999,15 @@ int UDPStandardImplementation::startReceiver(char *c){
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try{
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Exception::dontPrint(); //to handle errors
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if(hdf5_fileId[i]) delete hdf5_fileId[i];
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if(hdf5_dataspaceId[i]) delete hdf5_dataspaceId[i];
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if(hdf5_datasetId[i]) delete hdf5_datasetId[i];
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}// end of try block
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if(hdf5_dataspaceId[i]) {delete hdf5_dataspaceId[i]; hdf5_dataspaceId[i] = 0;}
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if(hdf5_datasetId[i]) {delete hdf5_datasetId[i]; hdf5_datasetId[i] = 0;}
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if(hdf5_fileId[i]) {delete hdf5_fileId[i]; hdf5_fileId[i] = 0;}
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}
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catch(Exception error){
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cprintf(RED,"Error in closing HDF5 handles\n");
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error.printError();
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return -1;
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pthread_mutex_unlock(&writeMutex);
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return FAIL;
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}
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/*
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if(hdf5DataspaceId[i]){
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@ -1267,14 +1262,13 @@ void UDPStandardImplementation::closeFile(int ithread){
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try{
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Exception::dontPrint(); //to handle errors
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if(hdf5_fileId[i]) delete hdf5_fileId[i];
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if(hdf5_dataspaceId[i]) delete hdf5_dataspaceId[i];
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if(hdf5_datasetId[i]) delete hdf5_datasetId[i];
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}// end of try block
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if(hdf5_dataspaceId[ithread]) {delete hdf5_dataspaceId[ithread]; hdf5_dataspaceId[ithread] = 0;}
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if(hdf5_datasetId[ithread]) {delete hdf5_datasetId[ithread]; hdf5_datasetId[ithread] = 0;}
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if(hdf5_fileId[ithread]) {delete hdf5_fileId[ithread]; hdf5_fileId[ithread] = 0;}
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}
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catch(Exception error){
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cprintf(RED,"Error in closing HDF5 handles\n");
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error.printError();
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return -1;
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}
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/*
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if(hdf5DataspaceId[ithread]){
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@ -1299,7 +1293,7 @@ void UDPStandardImplementation::closeFile(int ithread){
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#if (defined(MYROOT1) && defined(ALLFILE_DEBUG)) || !defined(MYROOT1)
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if(sfilefd[0]){
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#ifdef DEBUG4
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FILE_LOG(logDEBUG4) << "sfilefd: " << (int)sfilefd[i];
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FILE_LOG(logDEBUG4) << "sfilefd: " << (int)sfilefd[0];
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#endif
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fclose(sfilefd[0]);
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sfilefd[0] = 0;
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@ -1728,6 +1722,67 @@ int UDPStandardImplementation::createNewFile(int ithread){
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else if(fileFormatType == HDF5){
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pthread_mutex_lock(&writeMutex);
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//closing file
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try{
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Exception::dontPrint(); //to handle errors
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if(hdf5_dataspaceId[ithread]) {delete hdf5_dataspaceId[ithread]; hdf5_dataspaceId[ithread] = 0;}
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if(hdf5_datasetId[ithread]) {delete hdf5_datasetId[ithread]; hdf5_datasetId[ithread] = 0;}
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if(hdf5_fileId[ithread]) {delete hdf5_fileId[ithread]; hdf5_fileId[ithread] = 0; }
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}
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catch(AttributeIException error){
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cprintf(RED,"Error in creating attributes in thread %d\n",ithread);
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error.printError();
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pthread_mutex_unlock(&writeMutex);
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return FAIL;
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}
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catch(Exception error){
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cprintf(RED,"Error in closing HDF5 handles in thread %d\n",ithread);
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error.printError();
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pthread_mutex_unlock(&writeMutex);
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return FAIL;
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}//end of closing file
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//creating file
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try{
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Exception::dontPrint(); //to handle errors
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//creating file
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if(!overwriteEnable)
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hdf5_fileId[ithread] = new H5File( completeFileName[ithread], H5F_ACC_EXCL );
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else
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hdf5_fileId[ithread] = new H5File( completeFileName[ithread], H5F_ACC_TRUNC );
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//create property list for a dataset and set up fill values
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int fillvalue = -1;
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DSetCreatPropList plist;
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plist.setFillValue(hdf5_datatype, &fillvalue);
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//create dataspace for the dataset in the file
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hsize_t srcdims[3] = {NY,NX,numberOfFrames};
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if(dynamicRange == 4)
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srcdims[1] = NX/2;
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hdf5_dataspaceId[ithread] = new DataSpace (3,srcdims);
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//Create dataset and write it into the file
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hdf5_datasetId[ithread] = new DataSet (hdf5_fileId[ithread]->createDataSet(
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"Data", hdf5_datatype, *hdf5_dataspaceId[ithread], plist));
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//create the data space for the attribute
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hsize_t dims = 1;
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DataSpace attr_dataspace = DataSpace (1, &dims);
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//create file attribute
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Attribute attribute = hdf5_datasetId[ithread]->createAttribute("Dynamic Range",
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PredType::STD_I32LE, attr_dataspace);
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//write the attribute data
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attribute.write(PredType::STD_I32LE, &dynamicRange);
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}
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catch(Exception error){
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cprintf(RED,"Error in creating HDF5 handles in thread %d\n",ithread);
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error.printError();
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pthread_mutex_unlock(&writeMutex);
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return FAIL;
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}//end of creating file
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pthread_mutex_unlock(&writeMutex);
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/*
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if(hdf5DataspaceId[ithread]){
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H5Sclose(hdf5DataspaceId[ithread]);
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hdf5DataspaceId[ithread] = 0;
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@ -1761,7 +1816,6 @@ int UDPStandardImplementation::createNewFile(int ithread){
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hdf5fileId[ithread] = 0;
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}
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//create file
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if(!overwriteEnable){
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hdf5fileId[ithread] = H5Fcreate(completeFileName[ithread], H5F_ACC_EXCL, H5P_DEFAULT, H5P_DEFAULT);
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@ -1779,6 +1833,8 @@ int UDPStandardImplementation::createNewFile(int ithread){
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}
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}
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//create dataspace and dataset
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hsize_t srcdims[3] = {NY,NX,numberOfFrames};
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if(dynamicRange == 4)
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@ -1808,6 +1864,7 @@ int UDPStandardImplementation::createNewFile(int ithread){
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}
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pthread_mutex_unlock(&writeMutex);
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*/
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}
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#endif
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@ -2872,11 +2929,29 @@ void UDPStandardImplementation::stopWriting(int ithread, char* wbuffer){
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if(fileWriteEnable && (cbAction > DO_NOTHING)){
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#ifdef HDF5C
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if(fileFormatType == HDF5){
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if(hdf5fileId[ithread]){
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if(fileFormatType == HDF5){;
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/*
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if(hdf5_datasetId[ithread]){
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pthread_mutex_lock(&writeMutex);
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// update attributes
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try{
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Exception::dontPrint(); //to handle errors
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hsize_t dims = 1;
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//create the data space for the attribute
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DataSpace attr_dataspace = DataSpace (1, &dims);
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//create file attribute
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Attribute attribute = hdf5_datasetId[ithread]->createAttribute( "Dynamic Range",
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PredType::STD_I32LE, attr_dataspace);
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//write the attribute data
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attribute.write( PredType::STD_I32LE, &dynamicRange);
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delete hdf5_datasetId[ithread];
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hdf5_datasetId[ithread] = 0;
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}
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catch(Exception error){
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cprintf(RED,"Error in creating attributes in thread %d\n",ithread);
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error.printError();
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}
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*/
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/*
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bool error = true;
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hsize_t dims = 1;
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hid_t hdf5AttributeDataspaceId = H5Screate_simple (1, &dims, NULL);
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@ -2894,8 +2969,11 @@ void UDPStandardImplementation::stopWriting(int ithread, char* wbuffer){
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if(error){
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FILE_LOG(logERROR) << "Could not create attribute for " << completeFileName[ithread] << endl;
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}
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*/
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/*
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pthread_mutex_unlock(&writeMutex);
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}
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*/
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}
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else
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#endif
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@ -3114,30 +3192,39 @@ void UDPStandardImplementation::handleCompleteFramesOnly(int ithread, char* wbuf
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//write to file if enabled and update write parameters
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if((fileWriteEnable) && (sfilefd[ithread]||hdf5fileId[ithread])){
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if((fileWriteEnable) && (sfilefd[ithread]
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#ifdef HDF5C
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||hdf5_fileId[ithread])){
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#else
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)){
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#endif
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if(tempframenumber && (tempframenumber%maxFramesPerFile) == 0)
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createNewFile(ithread);
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#ifdef HDF5C
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if(fileFormatType == HDF5){
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pthread_mutex_lock(&writeMutex);
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hsize_t dims2[2]={NY,NX};
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hsize_t count[3] = {NY,NX,1};
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hsize_t start[3] = {0, 0, tempframenumber};
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hsize_t dims2[2]={NY,NX};
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if(dynamicRange == 4){
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dims2[1] = NX/2;
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count[1] = NX/2;
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}
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hid_t memspace = H5Screate_simple(2,dims2,NULL);
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hsize_t start[3] = {0, 0, tempframenumber};
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if(H5Sselect_hyperslab(hdf5DataspaceId[ithread], H5S_SELECT_SET, start, NULL, count, NULL)<0){
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cprintf(RED,"could not create hyperslab %d \n",ithread);
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try{
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Exception::dontPrint(); //to handle errors
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hdf5_dataspaceId[ithread]->selectHyperslab( H5S_SELECT_SET, count, start);
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DataSpace memspace(2,dims2);
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hdf5_datasetId[ithread]->write(wbuffer + fifoBufferHeaderSize, hdf5_datatype, memspace, *hdf5_dataspaceId[ithread]);
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}
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if(H5Dwrite (hdf5DatasetId[ithread], hdf5DataType, memspace, hdf5DataspaceId[ithread],
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H5P_DEFAULT, wbuffer + fifoBufferHeaderSize)<0){
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cprintf(RED,"could not write dataset for thread %d \n",ithread);
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}
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H5Sclose(memspace);
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catch(Exception error){
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cprintf(RED,"Error in writing to file in thread %d\n",ithread);
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error.printError();
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}
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pthread_mutex_unlock(&writeMutex);
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}else
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