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maliakal_d 2020-04-30 17:09:14 +02:00
parent 9a87ba610a
commit f41083842f
1 changed files with 47 additions and 14 deletions
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59
slsReceiverSoftware/src/HDF5File.cpp
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@ -499,14 +499,11 @@ void HDF5File::CreateMasterDataFile(masterAttributes& masterFileAttributes) {
FileCreatPropList::DEFAULT, FileCreatPropList::DEFAULT,
flist ); flist );
//variables
DataSpace dataspace = DataSpace (H5S_SCALAR);
StrType strdatatype(PredType::C_S1,256);
//create attributes //create attributes
//version //version
{ {
double dValue = masterFileAttributes.version; double dValue = masterFileAttributes.version;
DataSpace dataspace = DataSpace (H5S_SCALAR);
Attribute attribute = masterfd->createAttribute("version",PredType::NATIVE_DOUBLE, dataspace); Attribute attribute = masterfd->createAttribute("version",PredType::NATIVE_DOUBLE, dataspace);
attribute.write(PredType::NATIVE_DOUBLE, &dValue); attribute.write(PredType::NATIVE_DOUBLE, &dValue);
} }
@ -520,14 +517,18 @@ void HDF5File::CreateMasterDataFile(masterAttributes& masterFileAttributes) {
//Dynamic Range //Dynamic Range
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "dynamic range", PredType::NATIVE_INT, dataspace ); DataSet dataset = group5.createDataSet ( "dynamic range", PredType::NATIVE_INT, dataspace );
dataset.write ( &(masterFileAttributes.dynamicRange), PredType::NATIVE_INT); dataset.write ( &(masterFileAttributes.dynamicRange), PredType::NATIVE_INT);
Attribute attribute = dataset.createAttribute("unit",strdatatype, dataspace); DataSpace dataspaceAttr = DataSpace (H5S_SCALAR);
attribute.write(strdatatype, std::string("bits").c_str()); StrType strdatatype(PredType::C_S1,256);
Attribute attribute = dataset.createAttribute("unit",strdatatype, dataspaceAttr);
attribute.write(strdatatype, std::string("bits"));
} }
//Ten Giga //Ten Giga
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
int iValue = masterFileAttributes.tenGiga; int iValue = masterFileAttributes.tenGiga;
DataSet dataset = group5.createDataSet ( "ten giga enable", PredType::NATIVE_INT, dataspace ); DataSet dataset = group5.createDataSet ( "ten giga enable", PredType::NATIVE_INT, dataspace );
dataset.write ( &iValue, PredType::NATIVE_INT); dataset.write ( &iValue, PredType::NATIVE_INT);
@ -535,112 +536,139 @@ void HDF5File::CreateMasterDataFile(masterAttributes& masterFileAttributes) {
//Image Size //Image Size
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "image size", PredType::NATIVE_INT, dataspace ); DataSet dataset = group5.createDataSet ( "image size", PredType::NATIVE_INT, dataspace );
dataset.write ( &(masterFileAttributes.imageSize), PredType::NATIVE_INT); dataset.write ( &(masterFileAttributes.imageSize), PredType::NATIVE_INT);
Attribute attribute = dataset.createAttribute("unit",strdatatype, dataspace); DataSpace dataspaceAttr = DataSpace (H5S_SCALAR);
StrType strdatatype(PredType::C_S1,256);
Attribute attribute = dataset.createAttribute("unit",strdatatype, dataspaceAttr);
attribute.write(strdatatype, std::string("bytes")); attribute.write(strdatatype, std::string("bytes"));
} }
//x //x
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "number of pixels in x axis", PredType::NATIVE_INT, dataspace ); DataSet dataset = group5.createDataSet ( "number of pixels in x axis", PredType::NATIVE_INT, dataspace );
dataset.write ( &(masterFileAttributes.nPixelsX), PredType::NATIVE_INT); dataset.write ( &(masterFileAttributes.nPixelsX), PredType::NATIVE_INT);
} }
//y //y
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "number of pixels in y axis", PredType::NATIVE_INT, dataspace ); DataSet dataset = group5.createDataSet ( "number of pixels in y axis", PredType::NATIVE_INT, dataspace );
dataset.write ( &(masterFileAttributes.nPixelsY), PredType::NATIVE_INT); dataset.write ( &(masterFileAttributes.nPixelsY), PredType::NATIVE_INT);
} }
//Maximum frames per file //Maximum frames per file
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "maximum frames per file", PredType::NATIVE_INT, dataspace ); DataSet dataset = group5.createDataSet ( "maximum frames per file", PredType::NATIVE_INT, dataspace );
dataset.write ( &(masterFileAttributes.maxFramesPerFile), PredType::NATIVE_INT); dataset.write ( &(masterFileAttributes.maxFramesPerFile), PredType::NATIVE_INT);
} }
//Total Frames //Total Frames
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "total frames", PredType::STD_U64LE, dataspace ); DataSet dataset = group5.createDataSet ( "total frames", PredType::STD_U64LE, dataspace );
dataset.write ( &(masterFileAttributes.totalFrames), PredType::STD_U64LE); dataset.write ( &(masterFileAttributes.totalFrames), PredType::STD_U64LE);
} }
//Exptime //Exptime
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "exposure time", PredType::STD_U64LE, dataspace ); DataSet dataset = group5.createDataSet ( "exposure time", PredType::STD_U64LE, dataspace );
dataset.write ( &(masterFileAttributes.exptimeNs), PredType::STD_U64LE); dataset.write ( &(masterFileAttributes.exptimeNs), PredType::STD_U64LE);
Attribute attribute = dataset.createAttribute("unit",strdatatype, dataspace); DataSpace dataspaceAttr = DataSpace (H5S_SCALAR);
StrType strdatatype(PredType::C_S1,256);
Attribute attribute = dataset.createAttribute("unit",strdatatype, dataspaceAttr);
attribute.write(strdatatype, std::string("ns")); attribute.write(strdatatype, std::string("ns"));
} }
//SubExptime //SubExptime
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "sub exposure time", PredType::STD_U64LE, dataspace ); DataSet dataset = group5.createDataSet ( "sub exposure time", PredType::STD_U64LE, dataspace );
dataset.write ( &(masterFileAttributes.subExptimeNs), PredType::STD_U64LE); dataset.write ( &(masterFileAttributes.subExptimeNs), PredType::STD_U64LE);
Attribute attribute = dataset.createAttribute("unit",strdatatype, dataspace); DataSpace dataspaceAttr = DataSpace (H5S_SCALAR);
StrType strdatatype(PredType::C_S1,256);
Attribute attribute = dataset.createAttribute("unit",strdatatype, dataspaceAttr);
attribute.write(strdatatype, std::string("ns")); attribute.write(strdatatype, std::string("ns"));
} }
//SubPeriod //SubPeriod
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "sub period", PredType::STD_U64LE, dataspace ); DataSet dataset = group5.createDataSet ( "sub period", PredType::STD_U64LE, dataspace );
dataset.write ( &(masterFileAttributes.subPeriodNs), PredType::STD_U64LE); dataset.write ( &(masterFileAttributes.subPeriodNs), PredType::STD_U64LE);
Attribute attribute = dataset.createAttribute("unit",strdatatype, dataspace); DataSpace dataspaceAttr = DataSpace (H5S_SCALAR);
StrType strdatatype(PredType::C_S1,256);
Attribute attribute = dataset.createAttribute("unit",strdatatype, dataspaceAttr);
attribute.write(strdatatype, std::string("ns")); attribute.write(strdatatype, std::string("ns"));
} }
//Period //Period
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "acquisition period", PredType::STD_U64LE, dataspace ); DataSet dataset = group5.createDataSet ( "acquisition period", PredType::STD_U64LE, dataspace );
dataset.write ( &(masterFileAttributes.periodNs), PredType::STD_U64LE); dataset.write ( &(masterFileAttributes.periodNs), PredType::STD_U64LE);
Attribute attribute = dataset.createAttribute("unit",strdatatype, dataspace); DataSpace dataspaceAttr = DataSpace (H5S_SCALAR);
StrType strdatatype(PredType::C_S1,256);
Attribute attribute = dataset.createAttribute("unit",strdatatype, dataspaceAttr);
attribute.write(strdatatype, std::string("ns")); attribute.write(strdatatype, std::string("ns"));
} }
//Quad Enable //Quad Enable
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "quad enable", PredType::NATIVE_INT, dataspace ); DataSet dataset = group5.createDataSet ( "quad enable", PredType::NATIVE_INT, dataspace );
dataset.write ( &(masterFileAttributes.quadEnable), PredType::NATIVE_INT); dataset.write ( &(masterFileAttributes.quadEnable), PredType::NATIVE_INT);
} }
//Analog Flag //Analog Flag
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "analog flag", PredType::NATIVE_INT, dataspace ); DataSet dataset = group5.createDataSet ( "analog flag", PredType::NATIVE_INT, dataspace );
dataset.write ( &(masterFileAttributes.analogFlag), PredType::NATIVE_INT); dataset.write ( &(masterFileAttributes.analogFlag), PredType::NATIVE_INT);
} }
//Digital Flag //Digital Flag
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "digital flag", PredType::NATIVE_INT, dataspace ); DataSet dataset = group5.createDataSet ( "digital flag", PredType::NATIVE_INT, dataspace );
dataset.write ( &(masterFileAttributes.digitalFlag), PredType::NATIVE_INT); dataset.write ( &(masterFileAttributes.digitalFlag), PredType::NATIVE_INT);
} }
//ADC Mask //ADC Mask
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "adc mask", PredType::NATIVE_INT, dataspace ); DataSet dataset = group5.createDataSet ( "adc mask", PredType::NATIVE_INT, dataspace );
dataset.write ( &(masterFileAttributes.adcmask), PredType::NATIVE_INT); dataset.write ( &(masterFileAttributes.adcmask), PredType::NATIVE_INT);
} }
//Dbit Offset //Dbit Offset
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "dbit offset", PredType::NATIVE_INT, dataspace ); DataSet dataset = group5.createDataSet ( "dbit offset", PredType::NATIVE_INT, dataspace );
dataset.write ( &(masterFileAttributes.dbitoffset), PredType::NATIVE_INT); dataset.write ( &(masterFileAttributes.dbitoffset), PredType::NATIVE_INT);
} }
// Dbit List // Dbit List
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "dbit bitset list", PredType::STD_U64LE, dataspace ); DataSet dataset = group5.createDataSet ( "dbit bitset list", PredType::STD_U64LE, dataspace );
dataset.write ( &(masterFileAttributes.dbitlist), PredType::STD_U64LE); dataset.write ( &(masterFileAttributes.dbitlist), PredType::STD_U64LE);
} }
// Roi xmin // Roi xmin
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "roi xmin", PredType::NATIVE_INT, dataspace ); DataSet dataset = group5.createDataSet ( "roi xmin", PredType::NATIVE_INT, dataspace );
dataset.write ( &(masterFileAttributes.roiXmin), PredType::NATIVE_INT); dataset.write ( &(masterFileAttributes.roiXmin), PredType::NATIVE_INT);
} }
// Roi xmax // Roi xmax
{ {
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "roi xmax", PredType::NATIVE_INT, dataspace ); DataSet dataset = group5.createDataSet ( "roi xmax", PredType::NATIVE_INT, dataspace );
dataset.write ( &(masterFileAttributes.roiXmax), PredType::NATIVE_INT); dataset.write ( &(masterFileAttributes.roiXmax), PredType::NATIVE_INT);
} }
@ -648,6 +676,8 @@ void HDF5File::CreateMasterDataFile(masterAttributes& masterFileAttributes) {
//Timestamp //Timestamp
{ {
time_t t = time(0); time_t t = time(0);
StrType strdatatype(PredType::C_S1,256);
DataSpace dataspace = DataSpace (H5S_SCALAR);
DataSet dataset = group5.createDataSet ( "timestamp", strdatatype, dataspace ); DataSet dataset = group5.createDataSet ( "timestamp", strdatatype, dataspace );
dataset.write ( std::string(ctime(&t)), strdatatype ); dataset.write ( std::string(ctime(&t)), strdatatype );
} }
@ -763,7 +793,7 @@ void HDF5File::CreateVirtualDataFile(uint32_t maxFramesPerFile, uint64_t numf) {
<< *fileIndex << ".h5"; << *fileIndex << ".h5";
std::string srcFileName = os.str(); std::string srcFileName = os.str();
LOG(logERROR) << srcFileName; LOG(logDEBUG1) << srcFileName;
// find relative path // find relative path
std::string relative_srcFileName = srcFileName; std::string relative_srcFileName = srcFileName;
{ {
@ -848,7 +878,10 @@ void HDF5File::CreateVirtualDataFile(uint32_t maxFramesPerFile, uint64_t numf) {
} }
void HDF5File::LinkVirtualInMaster(std::string fname, std::string dsetname) { void HDF5File::LinkVirtualInMaster(std::string fname, std::string dsetname) {
std::lock_guard<std::mutex> lock(HDF5File::hdf5Lib);
if (fname == currentFileName) {
std::lock_guard<std::mutex> lock(HDF5File::hdf5Lib);
}
char linkname[100]; char linkname[100];
hid_t vfd = 0; hid_t vfd = 0;