readoutspeed in rx master file and other master file inconsistencies (#1245)

readout speed added to json and h5 master files.
Also fixed master file inconsistencies

Sserver binaries
- update server binaries because readoutspeed needs to be sent to receiver with rx_hostname command

API
- added const to Detector class set/getburstmode

Python
- updated python bindings (burstmode const and roi arguments)

Cmd generation
- added pragma once in Caller.in.h as Caller is included in test files

m3: num channels due to #counters < 3
* workaround for m3 for messed up num channels (client always assumes all counters enabled and adds them to num channels), fix for hdf5

g2: exptime master file inconsistency
- exptime didnt match because of round of when setting burst mode (sets to a different clk divider)
- so updating actual time for all timers (exptime, period, subexptime etc, )  in Module class, get timer values from detector when setting it and then send to receiver to write in master file

ctb image size incorrect:
-  write actual size into master file and not the reserved size (digital reduces depending on dbit list and dbit offset)
- added a calculate ctb image size free function in generalData.h that is used there as well as for the tests.


master file inconsistencies
- refactored master attributes writing using templates
-    names changed to keep it consistent between json and hdf5 master file (Version, Pixels, Exposure Times, GateDelays, Acquisition Period, etc.)
-  datatypes changed to keep it simple where possible: imageSize, dynamicRange, tengiga, quad, readnrows, analog, analogsamples, digital, digitalsamples, dbitreorder, dbitoffset, transceivermask, transeiver, transceiversamples, countermask, gates =>int
- replacing "toString" with arrays, objects etc for eg for scan, rois, etc.
- json header always written (empty dataset or empty brackets)
- hdf5 needs const char* so have to convert strings to it, but taking care that strings exist prior to push_back
- master attributes (redundant string literals->error prone

tests for master file
- suppressed deprecated functions in rapidjson warnings just for the tests
- added slsREceiverSoftware/src to allow access to receiver_defs.h to test binary/hdf5 version
- refactored acquire tests by moving all the acquire tests from individual detector type files to a single one=test-Caller-acquire.cpp
- set some default settings (loadBasicSettings) for a basic acquire at load config part for the test_simulator python scripts. so minimum number of settings for detector to be set for any acquire tests.
- added tests to test master files for json and hdf5= test-Caller-master-attributes.cpp
- added option to add '-m' markers for tests using test_simulator python script

tests/scripts/test_roi.py

@@ -7,8 +7,9 @@ This file is used to start up simulators, receivers and test roi for every detec
 import sys, time
 import traceback
 
-from slsdet import Detector
+from slsdet import Detector, burstMode
 from slsdet.defines import DEFAULT_TCP_RX_PORTNO, DEFAULT_UDP_DST_PORTNO
+from datetime import timedelta
 
 
 from utils_for_test import (
@@ -19,6 +20,7 @@ from utils_for_test import (
     startProcessInBackground,
     startDetectorVirtualServer,
     connectToVirtualServers,
+    loadBasicSettings,
     runProcessWithLogFile
 )
 
@@ -88,6 +90,7 @@ def startTestsForAll(fp):
                 startDetectorVirtualServer(server, nmods, fp)
                 startReceiver(nmods, fp)
                 d = loadConfigForRoi(name=server, fp=fp, num_mods=nmods, num_interfaces=ninterfaces)
+                loadBasicSettings(name=server, d=d, fp=fp)
 
                 fname = ROI_TEST_FNAME + server + '.txt'
                 cmd = ['tests', 'rx_roi', '--abort', '-s']