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https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2025-04-20 02:40:03 +02:00
energyCalibration updated with Sophie's version
This commit is contained in:
parent
2b3b5af303
commit
e65e7ac42f
@ -1 +1 @@
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Subproject commit 8de7772cc72daca8e947b79b83fea46214931604
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Subproject commit 4f72ef846fe8453596230ac285eeaa0ce3278bb4
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#ifndef JUNGFRAUHIGHZSINGLECHIPDATA_H
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#define JUNGFRAUHIGHZSINGLECHIPDATA_H
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#include "slsDetectorData.h"
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//#define VERSION_V2
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/**
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@short structure for a Detector Packet or Image Header
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@li frameNumber is the frame number
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@li expLength is the subframe number (32 bit eiger) or real time exposure time in 100ns (others)
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@li packetNumber is the packet number
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@li bunchId is the bunch id from beamline
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@li timestamp is the time stamp with 10 MHz clock
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@li modId is the unique module id (unique even for left, right, top, bottom)
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@li xCoord is the x coordinate in the complete detector system
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@li yCoord is the y coordinate in the complete detector system
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@li zCoord is the z coordinate in the complete detector system
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@li debug is for debugging purposes
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@li roundRNumber is the round robin set number
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@li detType is the detector type see :: detectorType
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@li version is the version number of this structure format
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*/
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typedef struct {
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uint64_t bunchNumber; /**< is the frame number */
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uint64_t pre; /**< something */
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} jf_header;
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class jungfrauHighZSingleChipData : public slsDetectorData<uint16_t> {
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private:
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int iframe;
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public:
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/**
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Implements the slsReceiverData structure for the moench02 prototype read out by a module i.e. using the slsReceiver
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(160x160 pixels, 40 packets 1286 large etc.)
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\param c crosstalk parameter for the output buffer
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*/
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jungfrauHighZSingleChipData(): slsDetectorData<uint16_t>(256, 256, 256*256*2+sizeof(jf_header)) {
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for (int ix=0; ix<256; ix++) {
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for (int iy=0; iy<256; iy++) {
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dataMap[iy][ix]=sizeof(jf_header)+(256*iy+ix)*2;
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#ifdef HIGHZ
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dataMask[iy][ix]=0x3fff;
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#endif
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}
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}
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iframe=0;
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// cout << "data struct created" << endl;
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};
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/**
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Returns the value of the selected channel for the given dataset as double.
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\param data pointer to the dataset (including headers etc)
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\param ix pixel number in the x direction
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\param iy pixel number in the y direction
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\returns data for the selected channel, with inversion if required as double
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*/
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virtual double getValue(char *data, int ix, int iy=0) {
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uint16_t val=getChannel(data, ix, iy)&0x3fff;
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return val;
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};
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/* virtual void calcGhost(char *data, int ix, int iy) { */
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/* double val=0; */
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/* ghost[iy][ix]=0; */
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/* } */
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/* virtual void calcGhost(char *data) { */
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/* for (int ix=0; ix<25; ix++){ */
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/* for (int iy=0; iy<200; iy++) { */
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/* calcGhost(data, ix,iy); */
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/* } */
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/* } */
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/* // cout << "*" << endl; */
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/* } */
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/* double getGhost(int ix, int iy) { */
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/* return 0; */
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/* }; */
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/**
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Returns the frame number for the given dataset. Purely virtual func.
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\param buff pointer to the dataset
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\returns frame number
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*/
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/* class jfrau_packet_header_t { */
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/* public: */
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/* unsigned char reserved[4]; */
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/* unsigned char packetNumber[1]; */
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/* unsigned char frameNumber[3]; */
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/* unsigned char bunchid[8]; */
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/* }; */
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int getFrameNumber(char *buff){return ((jf_header*)buff)->bunchNumber;};//*((int*)(buff+5))&0xffffff;};
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/**
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Returns the packet number for the given dataset. purely virtual func
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\param buff pointer to the dataset
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\returns packet number number
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*/
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int getPacketNumber(char *buff){return 0;}//((*(((int*)(buff+4))))&0xff)+1;};
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/* /\** */
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/* Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func */
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/* \param data pointer to the memory to be analyzed */
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/* \param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot */
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/* \param dsize size of the memory slot to be analyzed */
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/* \returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found */
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/* *\/ */
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/* virtual char *findNextFrame(char *data, int &ndata, int dsize){ndata=dsize; setDataSize(dsize); return data;}; */
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/* /\** */
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/* Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors! */
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/* \param filebin input file stream (binary) */
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/* \returns pointer to the begin of the last good frame, NULL if no frame is found or last frame is incomplete */
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/* *\/ */
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/* virtual char *readNextFrame(ifstream &filebin){ */
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/* // int afifo_length=0; */
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/* uint16_t *afifo_cont; */
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/* int ib=0; */
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/* if (filebin.is_open()) { */
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/* afifo_cont=new uint16_t[dataSize/2]; */
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/* while (filebin.read(((char*)afifo_cont)+ib,2)) { */
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/* ib+=2; */
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/* if (ib==dataSize) break; */
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/* } */
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/* if (ib>0) { */
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/* iframe++; */
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/* // cout << ib << "-" << endl; */
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/* return (char*)afifo_cont; */
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/* } else { */
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/* delete [] afifo_cont; */
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/* return NULL; */
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/* } */
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/* } */
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/* return NULL; */
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/* }; */
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virtual char *readNextFrame(ifstream &filebin) {
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int ff=-1, np=-1;
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return readNextFrame(filebin, ff, np);
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};
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virtual char *readNextFrame(ifstream &filebin, int &ff) {
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int np=-1;
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return readNextFrame(filebin, ff, np);
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};
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virtual char *readNextFrame(ifstream &filebin, int& ff, int &np) {
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char *data=new char[dataSize];
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char *d=readNextFrame(filebin, ff, np, data);
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if (d==NULL) {delete [] data; data=NULL;}
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return data;
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}
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virtual char *readNextFrame(ifstream &filebin, int& ff, int &np, char *data) {
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char *retval=0;
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int nd;
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int fnum = -1;
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np=0;
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int pn;
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// cout << dataSize << endl;
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if (ff>=0)
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fnum=ff;
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if (filebin.is_open()) {
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if (filebin.read(data, dataSize) ){
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ff=getFrameNumber(data);
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np=getPacketNumber(data);
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return data;
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}
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}
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return NULL;
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};
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/**
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Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
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\param data pointer to the memory to be analyzed
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\param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
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\param dsize size of the memory slot to be analyzed
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\returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found
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*/
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virtual char *findNextFrame(char *data, int &ndata, int dsize){
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if (dsize<dataSize) ndata=dsize;
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else ndata=dataSize;
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return data;
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}
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//int getPacketNumber(int x, int y) {return dataMap[y][x]/packetSize;};
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};
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#endif
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798
slsDetectorCalibration/energyCalibration.cpp
Normal file
798
slsDetectorCalibration/energyCalibration.cpp
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#include "energyCalibration.h"
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#ifdef __CINT
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#define MYROOT
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#endif
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#ifdef MYROOT
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#include <TMath.h>
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#include <TH1F.h>
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#include <TH2F.h>
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#include <TGraphErrors.h>
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#endif
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#include <iostream>
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#define max(a,b) ((a) > (b) ? (a) : (b))
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#define min(a,b) ((a) < (b) ? (a) : (b))
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#define ELEM_SWAP(a,b) { register int t=(a);(a)=(b);(b)=t; }
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using namespace std;
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#ifdef MYROOT
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Double_t energyCalibrationFunctions::pedestal(Double_t *x, Double_t *par) {
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return par[0]-par[1]*sign*x[0];
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}
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Double_t energyCalibrationFunctions::gaussChargeSharing(Double_t *x, Double_t *par) {
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Double_t f, arg=0;
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// Gaussian exponent
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if (par[3]!=0) {
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arg=sign*(x[0]-par[2])/par[3];
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}
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// the Gaussian
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f=TMath::Exp(-1*arg*arg/2.);
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// Gaussian + error function
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f=f+par[5]/2.*(TMath::Erfc(arg/(TMath::Sqrt(2.))));
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// Gaussian + error function + pedestal
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return par[4]*f+pedestal(x,par);
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}
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Double_t energyCalibrationFunctions::gaussChargeSharingKb(Double_t *x, Double_t *par) {
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Double_t f, arg=0,argb=0;
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// Gaussian exponent
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if (par[3]!=0) {
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arg=sign*(x[0]-par[2])/par[3];
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argb=sign*(x[0]-(par[6]*par[2]))/par[3]; // using absolute kb mean might seem better but like this the ratio can be fixed
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}
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// the Gaussian
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f=TMath::Exp(-1*arg*arg/2.);
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f=f+par[7]*(TMath::Exp(-1*argb*argb/2.));
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// Gaussian + error function
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f=f+par[5]/2.*(TMath::Erfc(arg/(TMath::Sqrt(2.))));
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f=f+par[7]*par[5]/2.*(TMath::Erfc(argb/(TMath::Sqrt(2.))));
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// Gaussian + error function + pedestal
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return par[4]*f+pedestal(x,par);
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}
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Double_t energyCalibrationFunctions::gaussChargeSharingKaDoublet(Double_t *x, Double_t *par) {
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Double_t f, f2, arg=0, arg2=0;
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// Gaussian exponent
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if (par[3]!=0) {
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arg=sign*(x[0]-par[2])/par[3];
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arg2=sign*(x[0]-par[6])/par[3];
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}
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// the Gaussian
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f=TMath::Exp(-1*arg*arg/2.);
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f2=TMath::Exp(-1*arg2*arg2/2.);
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// Gaussian + error function
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f=f+par[5]/2.*(TMath::Erfc(arg/(TMath::Sqrt(2.))));
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f2=f2+par[5]/2.*(TMath::Erfc(arg/(TMath::Sqrt(2.)))); // shouldn't this be arg2?
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// Gaussian + error function + pedestal
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return par[4]*f+par[7]*f2+pedestal(x,par);
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}
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Double_t energyCalibrationFunctions::gaussChargeSharingPixel(Double_t *x, Double_t *par) {
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Double_t f;
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if (par[3]<=0 || par[2]*(*x)<=0 || par[5]<0 || par[4]<=0) return 0;
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Double_t pp[3];
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pp[0]=0;
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pp[1]=par[2];
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pp[2]=par[3];
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f=(par[5]-par[6]*(TMath::Log(*x/par[2])))*erfBox(x,pp);
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f+=par[4]*TMath::Gaus(*x, par[2], par[3], kTRUE);
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return f+pedestal(x,par);
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}
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Double_t energyCalibrationFunctions::erfBox(Double_t *z, Double_t *par) {
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Double_t m=par[0];
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Double_t M=par[1];
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if (par[0]>par[1]) {
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m=par[1];
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M=par[0];
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}
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if (m==M)
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return 0;
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if (par[2]<=0) {
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if (*z>=m && *z<=M)
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return 1./(M-m);
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else
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return 0;
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}
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return (TMath::Erfc((z[0]-M)/par[2])-TMath::Erfc((z[0]-m)/par[2]))*0.5/(M-m);
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}
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// basic erf function
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Double_t energyCalibrationFunctions::erfFunction(Double_t *x, Double_t *par) {
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double arg=0;
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if (par[1]!=0) arg=(par[0]-x[0])/par[1];
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return ((par[2]/2.*(1+TMath::Erf(sign*arg/(TMath::Sqrt(2))))));
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};
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Double_t energyCalibrationFunctions::erfFunctionChargeSharing(Double_t *x, Double_t *par) {
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Double_t f;
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f=erfFunction(x, par+2)*(1+par[5]*(par[2]-x[0]))+par[0]-par[1]*x[0]*sign;
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return f;
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};
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Double_t energyCalibrationFunctions::erfFuncFluo(Double_t *x, Double_t *par) {
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Double_t f;
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f=erfFunctionChargeSharing(x, par)+erfFunction(x, par+6)*(1+par[9]*(par[6]-x[0]));
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return f;
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};
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#endif
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double energyCalibrationFunctions::median(double *x, int n){
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// sorts x into xmed array and returns median
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// n is number of values already in the xmed array
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double xmed[n];
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int k,i,j;
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for (i=0; i<n; i++) {
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k=0;
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for (j=0; j<n; j++) {
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if(*(x+i)>*(x+j))
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k++;
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if (*(x+i)==*(x+j)) {
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if (i>j)
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k++;
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}
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}
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xmed[k]=*(x+i);
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}
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k=n/2;
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return xmed[k];
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}
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int energyCalibrationFunctions::quick_select(int arr[], int n){
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int low, high ;
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int median;
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int middle, ll, hh;
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low = 0 ; high = n-1 ; median = (low + high) / 2;
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for (;;) {
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if (high <= low) /* One element only */
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return arr[median] ;
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if (high == low + 1) { /* Two elements only */
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if (arr[low] > arr[high])
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ELEM_SWAP(arr[low], arr[high]) ;
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return arr[median] ;
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}
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/* Find median of low, middle and high items; swap into position low */
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middle = (low + high) / 2;
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if (arr[middle] > arr[high]) ELEM_SWAP(arr[middle], arr[high]) ;
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if (arr[low] > arr[high]) ELEM_SWAP(arr[low], arr[high]) ;
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if (arr[middle] > arr[low]) ELEM_SWAP(arr[middle], arr[low]) ;
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/* Swap low item (now in position middle) into position (low+1) */
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ELEM_SWAP(arr[middle], arr[low+1]) ;
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/* Nibble from each end towards middle, swapping items when stuck */
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ll = low + 1;
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hh = high;
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for (;;) {
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do ll++; while (arr[low] > arr[ll]) ;
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do hh--; while (arr[hh] > arr[low]) ;
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if (hh < ll)
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break;
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ELEM_SWAP(arr[ll], arr[hh]) ;
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}
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/* Swap middle item (in position low) back into correct position */
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ELEM_SWAP(arr[low], arr[hh]) ;
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/* Re-set active partition */
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if (hh <= median)
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low = ll;
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if (hh >= median)
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high = hh - 1;
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}
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}
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int energyCalibrationFunctions::kth_smallest(int *a, int n, int k){
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register int i,j,l,m ;
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register double x ;
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l=0 ; m=n-1 ;
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while (l<m) {
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x=a[k] ;
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i=l ;
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j=m ;
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do {
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while (a[i]<x) i++ ;
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while (x<a[j]) j-- ;
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if (i<=j) {
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ELEM_SWAP(a[i],a[j]) ;
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i++ ; j-- ;
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}
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} while (i<=j) ;
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if (j<k) l=i ;
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if (k<i) m=j ;
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}
|
||||
return a[k] ;
|
||||
}
|
||||
|
||||
|
||||
|
||||
#ifdef MYROOT
|
||||
Double_t energyCalibrationFunctions::spectrum(Double_t *x, Double_t *par) {
|
||||
return gaussChargeSharing(x,par);
|
||||
}
|
||||
|
||||
Double_t energyCalibrationFunctions::spectrumkb(Double_t *x, Double_t *par) {
|
||||
return gaussChargeSharingKb(x,par);
|
||||
}
|
||||
|
||||
Double_t energyCalibrationFunctions::spectrumkadoublet(Double_t *x, Double_t *par) {
|
||||
return gaussChargeSharingKaDoublet(x,par);
|
||||
}
|
||||
|
||||
Double_t energyCalibrationFunctions::spectrumPixel(Double_t *x, Double_t *par) {
|
||||
return gaussChargeSharingPixel(x,par);
|
||||
}
|
||||
|
||||
|
||||
Double_t energyCalibrationFunctions::scurve(Double_t *x, Double_t *par) {
|
||||
return erfFunctionChargeSharing(x,par);
|
||||
}
|
||||
|
||||
|
||||
Double_t energyCalibrationFunctions::scurveFluo(Double_t *x, Double_t *par) {
|
||||
return erfFuncFluo(x,par);
|
||||
}
|
||||
#endif
|
||||
|
||||
energyCalibration::energyCalibration() :
|
||||
#ifdef MYROOT
|
||||
fit_min(-1),
|
||||
fit_max(-1),
|
||||
bg_offset(-1),
|
||||
bg_slope(-1),
|
||||
flex(-1),
|
||||
noise(-1),
|
||||
ampl(-1),
|
||||
cs_slope(-1),
|
||||
kb_mean(-1),
|
||||
kb_frac(-1),
|
||||
mean2(-1),
|
||||
ampl2(-1),
|
||||
fscurve(NULL),
|
||||
fspectrum(NULL),
|
||||
fspectrumkb(NULL),
|
||||
fspectrumkadoublet(NULL),
|
||||
#endif
|
||||
funcs(NULL),
|
||||
plot_flag(1), // fit parameters output to screen
|
||||
cs_flag(1)
|
||||
{
|
||||
|
||||
#ifdef MYROOT
|
||||
funcs=new energyCalibrationFunctions();
|
||||
|
||||
fscurve=new TF1("fscurve",funcs,&energyCalibrationFunctions::scurve,0,1000,6,"energyCalibrationFunctions","scurve");
|
||||
fscurve->SetParNames("Background Offset","Background Slope","Inflection Point","Noise RMS", "Number of Photons","Charge Sharing Slope");
|
||||
|
||||
fspectrum=new TF1("fspectrum",funcs,&energyCalibrationFunctions::spectrum,0,1000,6,"energyCalibrationFunctions","spectrum");
|
||||
fspectrum->SetParNames("Background Pedestal","Background slope", "Peak position","Noise RMS", "Number of Photons","Charge Sharing Pedestal");
|
||||
fspectrumkb=new TF1("fspectrumkb",funcs,&energyCalibrationFunctions::spectrumkb,0,1000,8,"energyCalibrationFunctions","spectrumkb");
|
||||
fspectrumkb->SetParNames("Background Pedestal","Background slope", "Peak position","Noise RMS", "Number of Photons","Charge Sharing Pedestal","kb mean","kb frac");
|
||||
|
||||
fspectrumkadoublet=new TF1("fspectrumkadoublet",funcs,&energyCalibrationFunctions::spectrumkadoublet,0,1000,8,"energyCalibrationFunctions","spectrumkadoublet");
|
||||
fspectrumkadoublet->SetParNames("Background Pedestal","Background slope", "Peak position","Noise RMS", "Number of Photons","Charge Sharing Pedestal","ka2 mean","n2");
|
||||
|
||||
fspixel=new TF1("fspixel",funcs,&energyCalibrationFunctions::spectrumPixel,0,1000,7,"energyCalibrationFunctions","spectrumPixel");
|
||||
fspixel->SetParNames("Background Pedestal","Background slope", "Peak position","Noise RMS", "Number of Photons","Charge Sharing Pedestal","Corner");
|
||||
|
||||
#endif
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
void energyCalibration::fixParameter(int ip, Double_t val){
|
||||
|
||||
fscurve->FixParameter(ip, val);
|
||||
fspectrum->FixParameter(ip, val);
|
||||
fspectrumkb->FixParameter(ip, val);
|
||||
fspectrumkadoublet->FixParameter(ip, val);
|
||||
}
|
||||
|
||||
|
||||
void energyCalibration::releaseParameter(int ip){
|
||||
|
||||
fscurve->ReleaseParameter(ip);
|
||||
fspectrum->ReleaseParameter(ip);
|
||||
fspectrumkb->ReleaseParameter(ip);
|
||||
fspectrumkadoublet->ReleaseParameter(ip);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
energyCalibration::~energyCalibration(){
|
||||
#ifdef MYROOT
|
||||
delete fscurve;
|
||||
delete fspectrum;
|
||||
delete fspectrumkb;
|
||||
delete fspectrumkadoublet;
|
||||
#endif
|
||||
|
||||
}
|
||||
|
||||
#ifdef MYROOT
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
TH1F* energyCalibration::createMedianHistogram(TH2F* h2, int ch0, int nch, int direction) {
|
||||
|
||||
if (h2==NULL || nch==0)
|
||||
return NULL;
|
||||
|
||||
double *x=new double[nch];
|
||||
TH1F *h1=NULL;
|
||||
|
||||
double val=-1;
|
||||
|
||||
if (direction==0) {
|
||||
h1=new TH1F("median","Median",h2->GetYaxis()->GetNbins(),h2->GetYaxis()->GetXmin(),h2->GetYaxis()->GetXmax());
|
||||
for (int ib=0; ib<h1->GetXaxis()->GetNbins(); ib++) {
|
||||
for (int ich=0; ich<nch; ich++) {
|
||||
x[ich]=h2->GetBinContent(ch0+ich+1,ib+1);
|
||||
}
|
||||
val=energyCalibrationFunctions::median(x, nch);
|
||||
h1->SetBinContent(ib+1,val);
|
||||
}
|
||||
} else if (direction==1) {
|
||||
h1=new TH1F("median","Median",h2->GetXaxis()->GetNbins(),h2->GetXaxis()->GetXmin(),h2->GetXaxis()->GetXmax());
|
||||
for (int ib=0; ib<h1->GetYaxis()->GetNbins(); ib++) {
|
||||
for (int ich=0; ich<nch; ich++) {
|
||||
x[ich]=h2->GetBinContent(ib+1,ch0+ich+1);
|
||||
}
|
||||
val=energyCalibrationFunctions::median(x, nch);
|
||||
h1->SetBinContent(ib+1,val);
|
||||
}
|
||||
}
|
||||
delete [] x;
|
||||
|
||||
return h1;
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
void energyCalibration::setStartParameters(Double_t *par){
|
||||
bg_offset=par[0];
|
||||
bg_slope=par[1];
|
||||
flex=par[2];
|
||||
noise=par[3];
|
||||
ampl=par[4];
|
||||
cs_slope=par[5];
|
||||
}
|
||||
|
||||
void energyCalibration::setStartParametersKb(Double_t *par){
|
||||
bg_offset=par[0];
|
||||
bg_slope=par[1];
|
||||
flex=par[2];
|
||||
noise=par[3];
|
||||
ampl=par[4];
|
||||
cs_slope=par[5];
|
||||
kb_mean=par[6];
|
||||
kb_frac=par[7];
|
||||
//fit_min = 400; // used for soleil flat field
|
||||
//fit_max = 800;
|
||||
}
|
||||
|
||||
void energyCalibration::setStartParametersKaDoublet(Double_t *par){
|
||||
bg_offset=par[0];
|
||||
bg_slope=par[1];
|
||||
flex=par[2];
|
||||
noise=par[3];
|
||||
ampl=par[4];
|
||||
cs_slope=par[5];
|
||||
mean2=par[6];
|
||||
ampl2=par[7];
|
||||
//fit_min = 400; // used for soleil flat field
|
||||
//fit_max = 800;
|
||||
}
|
||||
|
||||
|
||||
void energyCalibration::getStartParameters(Double_t *par){
|
||||
par[0]=bg_offset;
|
||||
par[1]=bg_slope;
|
||||
par[2]=flex;
|
||||
par[3]=noise;
|
||||
par[4]=ampl;
|
||||
par[5]=cs_slope;
|
||||
}
|
||||
|
||||
#endif
|
||||
int energyCalibration::setChargeSharing(int p) {
|
||||
if (p>=0) {
|
||||
cs_flag=p;
|
||||
#ifdef MYROOT
|
||||
if (p) {
|
||||
fscurve->ReleaseParameter(5);
|
||||
fspectrum->ReleaseParameter(1);
|
||||
fspectrumkb->ReleaseParameter(1);
|
||||
fspectrumkadoublet->ReleaseParameter(1);
|
||||
} else {
|
||||
fscurve->FixParameter(5,0);
|
||||
fspectrum->FixParameter(1,0);
|
||||
fspectrumkb->FixParameter(1,0);
|
||||
fspectrumkadoublet->FixParameter(1,0);
|
||||
}
|
||||
#endif
|
||||
}
|
||||
|
||||
return cs_flag;
|
||||
}
|
||||
|
||||
|
||||
#ifdef MYROOT
|
||||
void energyCalibration::initFitFunction(TF1 *fun, TH1 *h1) {
|
||||
|
||||
Double_t min=fit_min, max=fit_max;
|
||||
|
||||
Double_t mypar[6];
|
||||
|
||||
if (max==-1)
|
||||
max=h1->GetXaxis()->GetXmax();
|
||||
|
||||
if (min==-1)
|
||||
min=h1->GetXaxis()->GetXmin();
|
||||
|
||||
|
||||
if (bg_offset==-1)
|
||||
mypar[0]=0;
|
||||
else
|
||||
mypar[0]=bg_offset;
|
||||
|
||||
|
||||
if (bg_slope==-1)
|
||||
mypar[1]=0;
|
||||
else
|
||||
mypar[1]=bg_slope;
|
||||
|
||||
|
||||
if (flex==-1)
|
||||
mypar[2]=(min+max)/2.;
|
||||
else
|
||||
mypar[2]=flex;
|
||||
|
||||
|
||||
if (noise==-1)
|
||||
mypar[3]=0.1;
|
||||
else
|
||||
mypar[3]=noise;
|
||||
|
||||
if (ampl==-1)
|
||||
mypar[4]=h1->GetBinContent(h1->GetXaxis()->FindBin(0.5*(max+min)));
|
||||
else
|
||||
mypar[4]=ampl;
|
||||
|
||||
if (cs_slope==-1)
|
||||
mypar[5]=0;
|
||||
else
|
||||
mypar[5]=cs_slope;
|
||||
|
||||
fun->SetParameters(mypar);
|
||||
|
||||
fun->SetRange(min,max);
|
||||
|
||||
}
|
||||
|
||||
void energyCalibration::initFitFunctionKb(TF1 *fun, TH1 *h1) {
|
||||
|
||||
Double_t min=fit_min, max=fit_max;
|
||||
|
||||
Double_t mypar[8];
|
||||
|
||||
if (max==-1)
|
||||
max=h1->GetXaxis()->GetXmax();
|
||||
|
||||
if (min==-1)
|
||||
min=h1->GetXaxis()->GetXmin();
|
||||
|
||||
|
||||
if (bg_offset==-1)
|
||||
mypar[0]=0;
|
||||
else
|
||||
mypar[0]=bg_offset;
|
||||
|
||||
|
||||
if (bg_slope==-1)
|
||||
mypar[1]=0;
|
||||
else
|
||||
mypar[1]=bg_slope;
|
||||
|
||||
|
||||
if (flex==-1)
|
||||
mypar[2]=(min+max)/2.;
|
||||
else
|
||||
mypar[2]=flex;
|
||||
|
||||
|
||||
if (noise==-1)
|
||||
mypar[3]=0.1;
|
||||
else
|
||||
mypar[3]=noise;
|
||||
|
||||
if (ampl==-1)
|
||||
mypar[4]=h1->GetBinContent(h1->GetXaxis()->FindBin(0.5*(max+min)));
|
||||
else
|
||||
mypar[4]=ampl;
|
||||
|
||||
if (cs_slope==-1)
|
||||
mypar[5]=0;
|
||||
else
|
||||
mypar[5]=cs_slope;
|
||||
|
||||
if (kb_mean==-1)
|
||||
mypar[6]=0;
|
||||
else
|
||||
mypar[6]=kb_mean;
|
||||
|
||||
if (kb_frac==-1)
|
||||
mypar[7]=0;
|
||||
else
|
||||
mypar[7]=kb_frac;
|
||||
|
||||
fun->SetParameters(mypar);
|
||||
|
||||
fun->SetRange(min,max);
|
||||
|
||||
}
|
||||
|
||||
void energyCalibration::initFitFunctionKaDoublet(TF1 *fun, TH1 *h1) {
|
||||
|
||||
Double_t min=fit_min, max=fit_max;
|
||||
|
||||
Double_t mypar[8];
|
||||
|
||||
if (max==-1)
|
||||
max=h1->GetXaxis()->GetXmax();
|
||||
|
||||
if (min==-1)
|
||||
min=h1->GetXaxis()->GetXmin();
|
||||
|
||||
|
||||
if (bg_offset==-1)
|
||||
mypar[0]=0;
|
||||
else
|
||||
mypar[0]=bg_offset;
|
||||
|
||||
|
||||
if (bg_slope==-1)
|
||||
mypar[1]=0;
|
||||
else
|
||||
mypar[1]=bg_slope;
|
||||
|
||||
|
||||
if (flex==-1)
|
||||
mypar[2]=(min+max)/2.;
|
||||
else
|
||||
mypar[2]=flex;
|
||||
|
||||
|
||||
if (noise==-1)
|
||||
mypar[3]=0.1;
|
||||
else
|
||||
mypar[3]=noise;
|
||||
|
||||
if (ampl==-1)
|
||||
mypar[4]=h1->GetBinContent(h1->GetXaxis()->FindBin(0.5*(max+min)));
|
||||
else
|
||||
mypar[4]=ampl;
|
||||
|
||||
if (cs_slope==-1)
|
||||
mypar[5]=0;
|
||||
else
|
||||
mypar[5]=cs_slope;
|
||||
|
||||
if (mean2==-1)
|
||||
mypar[6]=0;
|
||||
else
|
||||
mypar[6]=mean2;
|
||||
|
||||
if (ampl2==-1)
|
||||
mypar[7]=0;
|
||||
else
|
||||
mypar[7]=ampl2;
|
||||
|
||||
fun->SetParameters(mypar);
|
||||
|
||||
fun->SetRange(min,max);
|
||||
|
||||
}
|
||||
|
||||
TF1* energyCalibration::fitFunction(TF1 *fun, TH1 *h1, Double_t *mypar, Double_t *emypar) {
|
||||
|
||||
|
||||
TF1* fitfun;
|
||||
|
||||
char fname[100];
|
||||
|
||||
strcpy(fname, fun->GetName());
|
||||
|
||||
if (plot_flag) {
|
||||
h1->Fit(fname,"R0Q");
|
||||
} else
|
||||
h1->Fit(fname,"R0Q");
|
||||
|
||||
fitfun= h1->GetFunction(fname);
|
||||
fitfun->GetParameters(mypar);
|
||||
for (int ip=0; ip<6; ip++) {
|
||||
emypar[ip]=fitfun->GetParError(ip);
|
||||
}
|
||||
return fitfun;
|
||||
}
|
||||
|
||||
TF1* energyCalibration::fitFunctionKb(TF1 *fun, TH1 *h1, Double_t *mypar, Double_t *emypar) {
|
||||
|
||||
|
||||
TF1* fitfun;
|
||||
|
||||
char fname[100];
|
||||
|
||||
strcpy(fname, fun->GetName());
|
||||
|
||||
if (plot_flag) {
|
||||
h1->Fit(fname,"R0Q");
|
||||
} else
|
||||
h1->Fit(fname,"R0Q");
|
||||
|
||||
fitfun= h1->GetFunction(fname);
|
||||
fitfun->GetParameters(mypar);
|
||||
for (int ip=0; ip<8; ip++) {
|
||||
emypar[ip]=fitfun->GetParError(ip);
|
||||
}
|
||||
return fitfun;
|
||||
}
|
||||
|
||||
TF1* energyCalibration::fitFunctionKaDoublet(TF1 *fun, TH1 *h1, Double_t *mypar, Double_t *emypar) {
|
||||
|
||||
|
||||
TF1* fitfun;
|
||||
|
||||
char fname[100];
|
||||
|
||||
strcpy(fname, fun->GetName());
|
||||
|
||||
if (plot_flag) {
|
||||
h1->Fit(fname,"R0Q");
|
||||
} else
|
||||
h1->Fit(fname,"R0Q");
|
||||
|
||||
|
||||
fitfun= h1->GetFunction(fname);
|
||||
fitfun->GetParameters(mypar);
|
||||
for (int ip=0; ip<8; ip++) {
|
||||
emypar[ip]=fitfun->GetParError(ip);
|
||||
}
|
||||
return fitfun;
|
||||
}
|
||||
|
||||
TF1* energyCalibration::fitSCurve(TH1 *h1, Double_t *mypar, Double_t *emypar) {
|
||||
initFitFunction(fscurve,h1);
|
||||
return fitFunction(fscurve, h1, mypar, emypar);
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
TF1* energyCalibration::fitSpectrum(TH1 *h1, Double_t *mypar, Double_t *emypar) {
|
||||
initFitFunction(fspectrum,h1);
|
||||
return fitFunction(fspectrum, h1, mypar, emypar);
|
||||
}
|
||||
|
||||
TF1* energyCalibration::fitSpectrumKb(TH1 *h1, Double_t *mypar, Double_t *emypar) {
|
||||
initFitFunctionKb(fspectrumkb,h1);
|
||||
return fitFunctionKb(fspectrumkb, h1, mypar, emypar);
|
||||
}
|
||||
|
||||
TF1* energyCalibration::fitSpectrumKaDoublet(TH1 *h1, Double_t *mypar, Double_t *emypar) {
|
||||
initFitFunctionKaDoublet(fspectrumkadoublet,h1);
|
||||
return fitFunctionKaDoublet(fspectrumkadoublet, h1, mypar, emypar);
|
||||
}
|
||||
|
||||
|
||||
TGraphErrors* energyCalibration::linearCalibration(int nscan, Double_t *en, Double_t *een, Double_t *fl, Double_t *efl, Double_t &gain, Double_t &off, Double_t &egain, Double_t &eoff) {
|
||||
|
||||
TGraphErrors *gr;
|
||||
|
||||
Double_t mypar[2];
|
||||
|
||||
gr = new TGraphErrors(nscan,en,fl,een,efl);
|
||||
|
||||
if (plot_flag) {
|
||||
gr->Fit("pol1");
|
||||
gr->SetMarkerStyle(20);
|
||||
} else
|
||||
gr->Fit("pol1","0Q");
|
||||
|
||||
TF1 *fitfun= gr->GetFunction("pol1");
|
||||
fitfun->GetParameters(mypar);
|
||||
|
||||
egain=fitfun->GetParError(1);
|
||||
eoff=fitfun->GetParError(0);
|
||||
|
||||
gain=funcs->setScanSign()*mypar[1];
|
||||
|
||||
off=mypar[0];
|
||||
|
||||
return gr;
|
||||
}
|
||||
|
||||
|
||||
TGraphErrors* energyCalibration::calibrate(int nscan, Double_t *en, Double_t *een, TH1F **h1, Double_t &gain, Double_t &off, Double_t &egain, Double_t &eoff, int integral) {
|
||||
|
||||
TH1F *h;
|
||||
|
||||
Double_t mypar[6], emypar[6];
|
||||
Double_t fl[nscan], efl[nscan];
|
||||
|
||||
|
||||
for (int ien=0; ien<nscan; ien++) {
|
||||
h=h1[ien];
|
||||
if (integral)
|
||||
fitSCurve(h,mypar,emypar);
|
||||
else
|
||||
fitSpectrum(h,mypar,emypar);
|
||||
|
||||
fl[ien]=mypar[2];
|
||||
efl[ien]=emypar[2];
|
||||
}
|
||||
return linearCalibration(nscan,en,een,fl,efl,gain,off, egain, eoff);
|
||||
|
||||
}
|
||||
|
||||
#endif
|
||||
|
||||
|
||||
|
||||
|
||||
@ -98,6 +98,8 @@ class energyCalibrationFunctions {
|
||||
par[5] is the fractional height of the charge sharing pedestal (scales with par[3])
|
||||
*/
|
||||
Double_t gaussChargeSharing(Double_t *x, Double_t *par);
|
||||
Double_t gaussChargeSharingKb(Double_t *x, Double_t *par);
|
||||
Double_t gaussChargeSharingKaDoublet(Double_t *x, Double_t *par);
|
||||
/**
|
||||
Gaussian Function with charge sharing pedestal
|
||||
par[0] is the absolute height of the background pedestal
|
||||
@ -153,6 +155,8 @@ Double_t erfFuncFluo(Double_t *x, Double_t *par);
|
||||
par[5] is the fractional height of the charge sharing pedestal (scales with par[4]
|
||||
*/
|
||||
Double_t spectrum(Double_t *x, Double_t *par);
|
||||
Double_t spectrumkb(Double_t *x, Double_t *par);
|
||||
Double_t spectrumkadoublet(Double_t *x, Double_t *par);
|
||||
|
||||
/**
|
||||
static function Gaussian with charge sharing pedestal with the correct scan sign
|
||||
@ -285,6 +289,8 @@ class energyCalibration {
|
||||
par[5] is the angual coefficient of the charge sharing slope (scales with par[3]) -- always positive
|
||||
*/
|
||||
void setStartParameters(Double_t *par);
|
||||
void setStartParametersKb(Double_t *par);
|
||||
void setStartParametersKaDoublet(Double_t *par);
|
||||
|
||||
/** get start parameters for the s-curve function
|
||||
\param par parameters, -1 means auto-calculated
|
||||
@ -315,16 +321,8 @@ class energyCalibration {
|
||||
\returns the fitted function - can be used e.g. to get the Chi2 or similar
|
||||
*/
|
||||
TF1 *fitSpectrum(TH1 *h1, Double_t *mypar, Double_t *emypar);
|
||||
|
||||
|
||||
/**
|
||||
fits histogram with the spectrum
|
||||
\param h1 1d-histogram to be fitted
|
||||
\param mypar pointer to fit parameters array
|
||||
\param emypar pointer to fit parameter errors
|
||||
\returns the fitted function - can be used e.g. to get the Chi2 or similar
|
||||
*/
|
||||
TF1 *fitSpectrumPixel(TH1 *h1, Double_t *mypar, Double_t *emypar);
|
||||
TF1 *fitSpectrumKb(TH1 *h1, Double_t *mypar, Double_t *emypar);
|
||||
TF1 *fitSpectrumKaDoublet(TH1 *h1, Double_t *mypar, Double_t *emypar);
|
||||
|
||||
|
||||
/**
|
||||
@ -399,6 +397,8 @@ class energyCalibration {
|
||||
*/
|
||||
|
||||
void initFitFunction(TF1 *fun, TH1 *h1);
|
||||
void initFitFunctionKb(TF1 *fun, TH1 *h1);
|
||||
void initFitFunctionKaDoublet(TF1 *fun, TH1 *h1);
|
||||
|
||||
|
||||
/**
|
||||
@ -410,6 +410,8 @@ class energyCalibration {
|
||||
\returns the fitted function - can be used e.g. to get the Chi2 or similar
|
||||
*/
|
||||
TF1 *fitFunction(TF1 *fun, TH1 *h1, Double_t *mypar, Double_t *emypar);
|
||||
TF1 *fitFunctionKb(TF1 *fun, TH1 *h1, Double_t *mypar, Double_t *emypar);
|
||||
TF1 *fitFunctionKaDoublet(TF1 *fun, TH1 *h1, Double_t *mypar, Double_t *emypar);
|
||||
|
||||
#endif
|
||||
|
||||
@ -423,11 +425,16 @@ class energyCalibration {
|
||||
Double_t noise; /**< start value for the noise */
|
||||
Double_t ampl; /**< start value for the number of photons */
|
||||
Double_t cs_slope; /**< start value for the charge sharing slope */
|
||||
|
||||
Double_t kb_mean;
|
||||
Double_t kb_frac;
|
||||
Double_t mean2;
|
||||
Double_t ampl2;
|
||||
|
||||
TF1 *fscurve; /**< function with which the s-curve will be fitted */
|
||||
|
||||
TF1 *fspectrum; /**< function with which the spectrum will be fitted */
|
||||
TF1 *fspectrumkb; /**< function with which the spectrum will be fitted */
|
||||
TF1 *fspectrumkadoublet; /**< function with which the spectrum will be fitted */
|
||||
|
||||
TF1 *fspixel; /**< function with which the spectrum will be fitted */
|
||||
|
||||
|
||||
@ -0,0 +1,47 @@
|
||||
#module add CBFlib/0.9.5
|
||||
INCDIR=-I. -I../ -I../interpolations -I../interpolations/etaVEL -I../dataStructures -I../../slsSupportLib/include/ -I../../slsReceiverSoftware/include/
|
||||
|
||||
LDFLAG= ../tiffIO.cpp -L/usr/lib64/ -lpthread -lm -lstdc++ -pthread -lrt -ltiff -O3 -std=c++11
|
||||
|
||||
MAIN=jungfrauClusterFinder.cpp
|
||||
|
||||
|
||||
all: jungfrauClusterFinder jungfrauMakeEta jungfrauInterpolation jungfrauNoInterpolation jungfrauPhotonCounter jungfrauAnalog
|
||||
|
||||
|
||||
|
||||
jungfrauClusterFinder: jungfrauClusterFinder.cpp $(INCS) clean
|
||||
g++ -o jungfrauClusterFinder jungfrauClusterFinder.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL
|
||||
|
||||
|
||||
jungfrauClusterFinderHighZ: jungfrauClusterFinder.cpp $(INCS) clean
|
||||
g++ -o jungfrauClusterFinderHighZ jungfrauClusterFinder.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DHIGHZ
|
||||
|
||||
|
||||
|
||||
|
||||
jungfrauMakeEta: jungfrauInterpolation.cpp $(INCS) clean
|
||||
g++ -o jungfrauMakeEta jungfrauInterpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DFF
|
||||
|
||||
jungfrauInterpolation: jungfrauInterpolation.cpp $(INCS) clean
|
||||
g++ -o jungfrauInterpolation jungfrauInterpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)
|
||||
|
||||
jungfrauNoInterpolation: jungfrauNoInterpolation.cpp $(INCS) clean
|
||||
g++ -o jungfrauNoInterpolation jungfrauNoInterpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)
|
||||
|
||||
jungfrauPhotonCounter: jungfrauPhotonCounter.cpp $(INCS) clean
|
||||
g++ -o jungfrauPhotonCounter jungfrauPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER
|
||||
|
||||
jungfrauAnalog: jungfrauPhotonCounter.cpp $(INCS) clean
|
||||
g++ -o jungfrauAnalog jungfrauPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DANALOG
|
||||
|
||||
jungfrauPhotonCounterHighZ: jungfrauPhotonCounter.cpp $(INCS) clean
|
||||
g++ -o jungfrauPhotonCounterHighZ jungfrauPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DHIGHZ
|
||||
|
||||
jungfrauAnalogHighZ: jungfrauPhotonCounter.cpp $(INCS) clean
|
||||
g++ -o jungfrauAnalogHighZ jungfrauPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DANALOG -DHIGHZ
|
||||
|
||||
clean:
|
||||
rm -f jungfrauClusterFinder jungfrauMakeEta jungfrauInterpolation jungfrauNoInterpolation jungfrauPhotonCounter jungfrauAnalog
|
||||
|
||||
|
||||
@ -0,0 +1,47 @@
|
||||
#module add CBFlib/0.9.5
|
||||
INCDIR=-I. -I../ -I../interpolations -I../interpolations/etaVEL -I../dataStructures -I../../slsSupportLib/include/ -I../../slsReceiverSoftware/include/
|
||||
|
||||
LDFLAG= ../tiffIO.cpp -L/usr/lib64/ -lpthread -lm -lstdc++ -pthread -lrt -ltiff -O3 -std=c++11
|
||||
|
||||
MAIN=moench03ClusterFinder.cpp
|
||||
|
||||
|
||||
all: moenchClusterFinder moenchMakeEta moenchInterpolation moenchNoInterpolation moenchPhotonCounter moenchAnalog
|
||||
|
||||
|
||||
|
||||
moenchClusterFinder: moench03ClusterFinder.cpp $(INCS) clean
|
||||
g++ -o moenchClusterFinder moench03ClusterFinder.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DNEWRECEIVER
|
||||
|
||||
|
||||
moenchClusterFinderHighZ: moench03ClusterFinder.cpp $(INCS) clean
|
||||
g++ -o moenchClusterFinderHighZ moench03ClusterFinder.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DNEWRECEIVER -DHIGHZ
|
||||
|
||||
|
||||
|
||||
|
||||
moenchMakeEta: moench03Interpolation.cpp $(INCS) clean
|
||||
g++ -o moenchMakeEta moench03Interpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DFF
|
||||
|
||||
moenchInterpolation: moench03Interpolation.cpp $(INCS) clean
|
||||
g++ -o moenchInterpolation moench03Interpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)
|
||||
|
||||
moenchNoInterpolation: moench03NoInterpolation.cpp $(INCS) clean
|
||||
g++ -o moenchNoInterpolation moench03NoInterpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)
|
||||
|
||||
moenchPhotonCounter: moenchPhotonCounter.cpp $(INCS) clean
|
||||
g++ -o moenchPhotonCounter moenchPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER
|
||||
|
||||
moenchAnalog: moenchPhotonCounter.cpp $(INCS) clean
|
||||
g++ -o moenchAnalog moenchPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DANALOG
|
||||
|
||||
moenchPhotonCounterHighZ: moenchPhotonCounter.cpp $(INCS) clean
|
||||
g++ -o moenchPhotonCounterHighZ moenchPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DHIGHZ
|
||||
|
||||
moenchAnalogHighZ: moenchPhotonCounter.cpp $(INCS) clean
|
||||
g++ -o moenchAnalogHighZ moenchPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DANALOG -DHIGHZ
|
||||
|
||||
clean:
|
||||
rm -f moenchClusterFinder moenchMakeEta moenchInterpolation moenchNoInterpolation moenchPhotonCounter moenchAnalog
|
||||
|
||||
|
||||
23
slsDetectorCalibration/jungfrauExecutables/Makefile.zmq
Normal file
23
slsDetectorCalibration/jungfrauExecutables/Makefile.zmq
Normal file
@ -0,0 +1,23 @@
|
||||
|
||||
INCDIR= -I. -I../dataStructures ../tiffIO.cpp -I../ -I../interpolations/ -I../../slsSupportLib/include/ -I../../slsReceiverSoftware/include/ -I../../libs/rapidjson/
|
||||
LDFLAG= -L/usr/lib64/ -lpthread -lm -lstdc++ -lzmq -pthread -lrt -ltiff -O3 -std=c++11 -Wall -L../../build/bin/ -lSlsSupport
|
||||
#-L../../bin -lhdf5 -L.
|
||||
|
||||
#DESTDIR?=../bin
|
||||
|
||||
all: moenchZmqProcess moenchZmq04Process
|
||||
#moenchZmqProcessCtbGui
|
||||
|
||||
moenchZmqProcess: moenchZmqProcess.cpp clean
|
||||
g++ -o moenchZmqProcess moenchZmqProcess.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWZMQ -DINTERP
|
||||
|
||||
moenchZmq04Process: moenchZmqProcess.cpp clean
|
||||
g++ -o moench04ZmqProcess moenchZmqProcess.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWZMQ -DINTERP -DMOENCH04
|
||||
|
||||
#moenchZmqProcessCtbGui: moenchZmqProcess.cpp clean
|
||||
# g++ -o moenchZmqProcessCtbGui moenchZmqProcess.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWZMQ -DINTERP -DCTBGUI
|
||||
|
||||
clean:
|
||||
rm -f moenchZmqProcess
|
||||
|
||||
|
||||
BIN
slsDetectorCalibration/jungfrauExecutables/jungfrauClusterFinder
Executable file
BIN
slsDetectorCalibration/jungfrauExecutables/jungfrauClusterFinder
Executable file
Binary file not shown.
@ -0,0 +1,161 @@
|
||||
//#include "sls/ansi.h"
|
||||
#include <iostream>
|
||||
|
||||
|
||||
//#include "moench03T1ZmqData.h"
|
||||
#include "jungfrauHighZSingleChipData.h"
|
||||
|
||||
|
||||
#include "multiThreadedAnalogDetector.h"
|
||||
#include "singlePhotonDetector.h"
|
||||
|
||||
#include <stdio.h>
|
||||
#include <map>
|
||||
#include <fstream>
|
||||
#include <sys/stat.h>
|
||||
|
||||
#include <ctime>
|
||||
using namespace std;
|
||||
|
||||
|
||||
int main(int argc, char *argv[]) {
|
||||
|
||||
|
||||
if (argc<6) {
|
||||
cout << "Usage is " << argv[0] << "indir outdir fname runmin runmax " << endl;
|
||||
return 1;
|
||||
}
|
||||
int p=10000;
|
||||
int fifosize=1000;
|
||||
int nthreads=1;
|
||||
int nsubpix=25;
|
||||
int etabins=nsubpix*10;
|
||||
double etamin=-1, etamax=2;
|
||||
int csize=3;
|
||||
int nx=400, ny=400;
|
||||
int save=1;
|
||||
int nsigma=5;
|
||||
int nped=1000;
|
||||
int ndark=100;
|
||||
int ok;
|
||||
int iprog=0;
|
||||
|
||||
|
||||
|
||||
|
||||
jungfrauHighZSingleChipData *decoder=new jungfrauHighZSingleChipData();
|
||||
|
||||
decoder->getDetectorSize(nx,ny);
|
||||
cout << "nx " << nx << " ny " << ny << endl;
|
||||
|
||||
//moench03T1ZmqData *decoder=new moench03T1ZmqData();
|
||||
singlePhotonDetector *filter=new singlePhotonDetector(decoder,csize, nsigma, 1, 0, nped, 200);
|
||||
// char tit[10000];
|
||||
cout << "filter " << endl;
|
||||
|
||||
|
||||
|
||||
|
||||
int* image;
|
||||
filter->newDataSet();
|
||||
|
||||
|
||||
int ff, np;
|
||||
int dsize=decoder->getDataSize();
|
||||
cout << " data size is " << dsize;
|
||||
|
||||
|
||||
char data[dsize];
|
||||
|
||||
ifstream filebin;
|
||||
char *indir=argv[1];
|
||||
char *outdir=argv[2];
|
||||
char *fformat=argv[3];
|
||||
int runmin=atoi(argv[4]);
|
||||
int runmax=atoi(argv[5]);
|
||||
|
||||
char fname[10000];
|
||||
char outfname[10000];
|
||||
char imgfname[10000];
|
||||
char pedfname[10000];
|
||||
char fn[10000];
|
||||
|
||||
std::time_t end_time;
|
||||
|
||||
FILE *of=NULL;
|
||||
cout << "input directory is " << indir << endl;
|
||||
cout << "output directory is " << outdir << endl;
|
||||
cout << "fileformat is " << fformat << endl;
|
||||
|
||||
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
|
||||
char* buff;
|
||||
multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
|
||||
|
||||
|
||||
mt->setDetectorMode(ePhotonCounting);
|
||||
mt->setFrameMode(eFrame);
|
||||
mt->StartThreads();
|
||||
mt->popFree(buff);
|
||||
|
||||
|
||||
cout << "mt " << endl;
|
||||
|
||||
int ifr=0;
|
||||
|
||||
|
||||
for (int irun=runmin; irun<runmax; irun++) {
|
||||
sprintf(fn,fformat,irun);
|
||||
sprintf(fname,"%s/%s.raw",indir,fn);
|
||||
sprintf(outfname,"%s/%s.clust",outdir,fn);
|
||||
sprintf(imgfname,"%s/%s.tiff",outdir,fn);
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
cout << fname << " " << outfname << " " << imgfname << endl;
|
||||
filebin.open((const char *)(fname), ios::in | ios::binary);
|
||||
// //open file
|
||||
if (filebin.is_open()){
|
||||
of=fopen(outfname,"w");
|
||||
if (of) {
|
||||
mt->setFilePointer(of);
|
||||
// cout << "file pointer set " << endl;
|
||||
} else {
|
||||
cout << "Could not open "<< outfname << " for writing " << endl;
|
||||
mt->setFilePointer(NULL);
|
||||
return 1;
|
||||
}
|
||||
// //while read frame
|
||||
ff=-1;
|
||||
while (decoder->readNextFrame(filebin, ff, np,buff)) {
|
||||
|
||||
mt->pushData(buff);
|
||||
mt->nextThread();
|
||||
mt->popFree(buff);
|
||||
ifr++;
|
||||
if (ifr%10000==0) cout << ifr << " " << ff << endl;
|
||||
ff=-1;
|
||||
}
|
||||
cout << "--" << endl;
|
||||
filebin.close();
|
||||
while (mt->isBusy()) {;}//wait until all data are processed from the queues
|
||||
if (of)
|
||||
fclose(of);
|
||||
|
||||
mt->writeImage(imgfname);
|
||||
mt->clearImage();
|
||||
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
|
||||
} else
|
||||
cout << "Could not open "<< fname << " for reading " << endl;
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
@ -0,0 +1,237 @@
|
||||
//#include "sls/ansi.h"
|
||||
#include <iostream>
|
||||
|
||||
|
||||
//#include "moench03T1ZmqData.h"
|
||||
#ifdef NEWRECEIVER
|
||||
#ifndef RECT
|
||||
#include "moench03T1ReceiverDataNew.h"
|
||||
#endif
|
||||
|
||||
#ifdef RECT
|
||||
#include "moench03T1ReceiverDataNewRect.h"
|
||||
#endif
|
||||
|
||||
#endif
|
||||
|
||||
|
||||
#ifdef CSAXS_FP
|
||||
#include "moench03T1ReceiverData.h"
|
||||
#endif
|
||||
#ifdef OLDDATA
|
||||
#include "moench03Ctb10GbT1Data.h"
|
||||
#endif
|
||||
|
||||
#ifdef REORDERED
|
||||
#include "moench03T1ReorderedData.h"
|
||||
#endif
|
||||
|
||||
// #include "interpolatingDetector.h"
|
||||
//#include "etaInterpolationPosXY.h"
|
||||
// #include "linearInterpolation.h"
|
||||
// #include "noInterpolation.h"
|
||||
#include "multiThreadedAnalogDetector.h"
|
||||
#include "singlePhotonDetector.h"
|
||||
//#include "interpolatingDetector.h"
|
||||
|
||||
#include <stdio.h>
|
||||
#include <map>
|
||||
#include <fstream>
|
||||
#include <sys/stat.h>
|
||||
|
||||
#include <ctime>
|
||||
using namespace std;
|
||||
|
||||
|
||||
int main(int argc, char *argv[]) {
|
||||
|
||||
|
||||
if (argc<6) {
|
||||
cout << "Usage is " << argv[0] << "indir outdir fname runmin runmax " << endl;
|
||||
return 1;
|
||||
}
|
||||
int p=10000;
|
||||
int fifosize=1000;
|
||||
int nthreads=1;
|
||||
int nsubpix=25;
|
||||
int etabins=nsubpix*10;
|
||||
double etamin=-1, etamax=2;
|
||||
int csize=3;
|
||||
int nx=400, ny=400;
|
||||
int save=1;
|
||||
int nsigma=5;
|
||||
int nped=1000;
|
||||
int ndark=100;
|
||||
int ok;
|
||||
int iprog=0;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
#ifdef NEWRECEIVER
|
||||
#ifdef RECT
|
||||
cout << "Should be rectangular!" <<endl;
|
||||
#endif
|
||||
moench03T1ReceiverDataNew *decoder=new moench03T1ReceiverDataNew();
|
||||
cout << "RECEIVER DATA WITH ONE HEADER!"<<endl;
|
||||
#endif
|
||||
|
||||
#ifdef CSAXS_FP
|
||||
moench03T1ReceiverData *decoder=new moench03T1ReceiverData();
|
||||
cout << "RECEIVER DATA WITH ALL HEADERS!"<<endl;
|
||||
#endif
|
||||
|
||||
#ifdef OLDDATA
|
||||
moench03Ctb10GbT1Data *decoder=new moench03Ctb10GbT1Data();
|
||||
cout << "OLD RECEIVER DATA!"<<endl;
|
||||
#endif
|
||||
|
||||
#ifdef REORDERED
|
||||
moench03T1ReorderedData *decoder=new moench03T1ReorderedData();
|
||||
cout << "REORDERED DATA!"<<endl;
|
||||
#endif
|
||||
|
||||
|
||||
decoder->getDetectorSize(nx,ny);
|
||||
cout << "nx " << nx << " ny " << ny << endl;
|
||||
|
||||
//moench03T1ZmqData *decoder=new moench03T1ZmqData();
|
||||
singlePhotonDetector *filter=new singlePhotonDetector(decoder,csize, nsigma, 1, 0, nped, 200);
|
||||
// char tit[10000];
|
||||
cout << "filter " << endl;
|
||||
|
||||
|
||||
|
||||
// filter->readPedestals("/scratch/ped_100.tiff");
|
||||
// interp->readFlatField("/scratch/eta_100.tiff",etamin,etamax);
|
||||
// cout << "filter "<< endl;
|
||||
|
||||
|
||||
int size = 327680;////atoi(argv[3]);
|
||||
|
||||
int* image;
|
||||
//int* image =new int[327680/sizeof(int)];
|
||||
filter->newDataSet();
|
||||
|
||||
|
||||
int ff, np;
|
||||
int dsize=decoder->getDataSize();
|
||||
cout << " data size is " << dsize;
|
||||
|
||||
|
||||
char data[dsize];
|
||||
|
||||
ifstream filebin;
|
||||
char *indir=argv[1];
|
||||
char *outdir=argv[2];
|
||||
char *fformat=argv[3];
|
||||
int runmin=atoi(argv[4]);
|
||||
int runmax=atoi(argv[5]);
|
||||
|
||||
char fname[10000];
|
||||
char outfname[10000];
|
||||
char imgfname[10000];
|
||||
char pedfname[10000];
|
||||
// strcpy(pedfname,argv[6]);
|
||||
char fn[10000];
|
||||
|
||||
std::time_t end_time;
|
||||
|
||||
FILE *of=NULL;
|
||||
cout << "input directory is " << indir << endl;
|
||||
cout << "output directory is " << outdir << endl;
|
||||
cout << "fileformat is " << fformat << endl;
|
||||
|
||||
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
char* buff;
|
||||
multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
|
||||
|
||||
|
||||
mt->setDetectorMode(ePhotonCounting);
|
||||
mt->setFrameMode(eFrame);
|
||||
mt->StartThreads();
|
||||
mt->popFree(buff);
|
||||
|
||||
|
||||
cout << "mt " << endl;
|
||||
|
||||
int ifr=0;
|
||||
|
||||
|
||||
for (int irun=runmin; irun<runmax; irun++) {
|
||||
sprintf(fn,fformat,irun);
|
||||
sprintf(fname,"%s/%s.raw",indir,fn);
|
||||
sprintf(outfname,"%s/%s.clust",outdir,fn);
|
||||
sprintf(imgfname,"%s/%s.tiff",outdir,fn);
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
cout << fname << " " << outfname << " " << imgfname << endl;
|
||||
filebin.open((const char *)(fname), ios::in | ios::binary);
|
||||
// //open file
|
||||
if (filebin.is_open()){
|
||||
of=fopen(outfname,"w");
|
||||
if (of) {
|
||||
mt->setFilePointer(of);
|
||||
// cout << "file pointer set " << endl;
|
||||
} else {
|
||||
cout << "Could not open "<< outfname << " for writing " << endl;
|
||||
mt->setFilePointer(NULL);
|
||||
return 1;
|
||||
}
|
||||
// //while read frame
|
||||
ff=-1;
|
||||
while (decoder->readNextFrame(filebin, ff, np,buff)) {
|
||||
// cout << "*"<<ifr++<<"*"<<ff<< endl;
|
||||
// cout << ff << " " << np << endl;
|
||||
// //push
|
||||
// for (int ix=0; ix<400; ix++)
|
||||
// for (int iy=0; iy<400; iy++) {
|
||||
// if (decoder->getChannel(buff, ix, iy)<3000 || decoder->getChannel(buff, ix, iy)>8000) {
|
||||
// cout << ifr << " " << ff << " " << ix << " " << iy << " " << decoder->getChannel(buff, ix, iy) << endl ;
|
||||
// }
|
||||
// }
|
||||
|
||||
mt->pushData(buff);
|
||||
// // //pop
|
||||
mt->nextThread();
|
||||
// // // cout << " " << (void*)buff;
|
||||
mt->popFree(buff);
|
||||
ifr++;
|
||||
if (ifr%10000==0) cout << ifr << " " << ff << endl;
|
||||
ff=-1;
|
||||
}
|
||||
cout << "--" << endl;
|
||||
filebin.close();
|
||||
// //close file
|
||||
// //join threads
|
||||
while (mt->isBusy()) {;}//wait until all data are processed from the queues
|
||||
if (of)
|
||||
fclose(of);
|
||||
|
||||
mt->writeImage(imgfname);
|
||||
mt->clearImage();
|
||||
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
|
||||
} else
|
||||
cout << "Could not open "<< fname << " for reading " << endl;
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
@ -0,0 +1,250 @@
|
||||
|
||||
#include "sls/ansi.h"
|
||||
#include <iostream>
|
||||
|
||||
//#include "moench03T1ZmqData.h"
|
||||
//#define DOUBLE_SPH
|
||||
//#define MANYFILES
|
||||
|
||||
#ifdef DOUBLE_SPH
|
||||
#include "single_photon_hit_double.h"
|
||||
#endif
|
||||
|
||||
#ifndef DOUBLE_SPH
|
||||
#include "single_photon_hit.h"
|
||||
#endif
|
||||
|
||||
//#include "etaInterpolationPosXY.h"
|
||||
#include "noInterpolation.h"
|
||||
#include "etaInterpolationPosXY.h"
|
||||
//#include "etaInterpolationCleverAdaptiveBins.h"
|
||||
//#include "etaInterpolationRandomBins.h"
|
||||
using namespace std;
|
||||
#define NC 400
|
||||
#define NR 400
|
||||
#define MAX_ITERATIONS (nSubPixels*100)
|
||||
|
||||
#define XTALK
|
||||
|
||||
int main(int argc, char *argv[]) {
|
||||
|
||||
#ifndef FF
|
||||
if (argc<9) {
|
||||
cout << "Wrong usage! Should be: "<< argv[0] << " infile etafile outfile runmin runmax ns cmin cmax" << endl;
|
||||
return 1;
|
||||
}
|
||||
#endif
|
||||
|
||||
#ifdef FF
|
||||
if (argc<7) {
|
||||
cout << "Wrong usage! Should be: "<< argv[0] << " infile etafile runmin runmax cmin cmax" << endl;
|
||||
return 1;
|
||||
}
|
||||
#endif
|
||||
int iarg=4;
|
||||
char infname[10000];
|
||||
char fname[10000];
|
||||
char outfname[10000];
|
||||
#ifndef FF
|
||||
iarg=4;
|
||||
#endif
|
||||
|
||||
#ifdef FF
|
||||
iarg=3;
|
||||
#endif
|
||||
int runmin=atoi(argv[iarg++]);
|
||||
int runmax=atoi(argv[iarg++]);
|
||||
cout << "Run min: " << runmin << endl;
|
||||
cout << "Run max: " << runmax << endl;
|
||||
|
||||
int nsubpix=4;
|
||||
#ifndef FF
|
||||
nsubpix=atoi(argv[iarg++]);
|
||||
cout << "Subpix: " << nsubpix << endl;
|
||||
#endif
|
||||
float cmin=atof(argv[iarg++]);
|
||||
float cmax=atof(argv[iarg++]);
|
||||
cout << "Energy min: " << cmin << endl;
|
||||
cout << "Energy max: " << cmax << endl;
|
||||
//int etabins=500;
|
||||
int etabins=1000;//nsubpix*2*100;
|
||||
double etamin=-1, etamax=2;
|
||||
//double etamin=-0.1, etamax=1.1;
|
||||
double eta3min=-2, eta3max=2;
|
||||
int quad;
|
||||
double sum, totquad;
|
||||
double sDum[2][2];
|
||||
double etax, etay, int_x, int_y;
|
||||
double eta3x, eta3y, int3_x, int3_y, noint_x, noint_y;
|
||||
int ok;
|
||||
int f0=-1;
|
||||
int ix, iy, isx, isy;
|
||||
int nframes=0, lastframe=-1;
|
||||
double d_x, d_y, res=5, xx, yy;
|
||||
int nph=0, badph=0, totph=0;
|
||||
FILE *f=NULL;
|
||||
|
||||
#ifdef DOUBLE_SPH
|
||||
single_photon_hit_double cl(3,3);
|
||||
#endif
|
||||
|
||||
#ifndef DOUBLE_SPH
|
||||
single_photon_hit cl(3,3);
|
||||
#endif
|
||||
|
||||
int nSubPixels=nsubpix;
|
||||
#ifndef NOINTERPOLATION
|
||||
eta2InterpolationPosXY *interp=new eta2InterpolationPosXY(NC, NR, nsubpix, etabins, etamin, etamax);
|
||||
//eta2InterpolationCleverAdaptiveBins *interp=new eta2InterpolationCleverAdaptiveBins(NC, NR, nsubpix, etabins, etamin, etamax);
|
||||
#endif
|
||||
#ifdef NOINTERPOLATION
|
||||
noInterpolation *interp=new noInterpolation(NC, NR, nsubpix);
|
||||
#endif
|
||||
|
||||
|
||||
|
||||
#ifndef FF
|
||||
#ifndef NOINTERPOLATION
|
||||
cout << "read ff " << argv[2] << endl;
|
||||
sprintf(fname,"%s",argv[2]);
|
||||
interp->readFlatField(fname);
|
||||
interp->prepareInterpolation(ok);//, MAX_ITERATIONS);
|
||||
#endif
|
||||
// return 0;
|
||||
#endif
|
||||
#ifdef FF
|
||||
cout << "Will write eta file " << argv[2] << endl;
|
||||
#endif
|
||||
|
||||
int *img;
|
||||
float *totimg=new float[NC*NR*nsubpix*nsubpix];
|
||||
for (ix=0; ix<NC; ix++) {
|
||||
for (iy=0; iy<NR; iy++) {
|
||||
for (isx=0; isx<nsubpix; isx++) {
|
||||
for (isy=0; isy<nsubpix; isy++) {
|
||||
totimg[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)]=0;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
#ifdef FF
|
||||
sprintf(outfname,argv[2]);
|
||||
#endif
|
||||
|
||||
int irun;
|
||||
for (irun=runmin; irun<runmax; irun++) {
|
||||
sprintf(infname,argv[1],irun);
|
||||
#ifndef FF
|
||||
sprintf(outfname,argv[3],irun);
|
||||
#endif
|
||||
|
||||
f=fopen(infname,"r");
|
||||
if (f) {
|
||||
cout << infname << endl;
|
||||
nframes=0;
|
||||
f0=-1;
|
||||
|
||||
while (cl.read(f)) {
|
||||
totph++;
|
||||
if (lastframe!=cl.iframe) {
|
||||
lastframe=cl.iframe;
|
||||
// cout << cl.iframe << endl;
|
||||
// f0=cl.iframe;
|
||||
if (nframes==0) f0=lastframe;
|
||||
nframes++;
|
||||
}
|
||||
//quad=interp->calcQuad(cl.get_cluster(), sum, totquad, sDum);
|
||||
quad=interp->calcEta(cl.get_cluster(), etax, etay, sum, totquad, sDum);
|
||||
if (sum>cmin && totquad/sum>0.8 && totquad/sum<1.2 && sum<cmax ) {
|
||||
nph++;
|
||||
// if (sum>200 && sum<580) {
|
||||
// interp->getInterpolatedPosition(cl.x,cl.y, totquad,quad,cl.get_cluster(),int_x, int_y);
|
||||
// #ifdef SOLEIL
|
||||
// if (cl.x>210 && cl.x<240 && cl.y>210 && cl.y<240) {
|
||||
// #endif
|
||||
#ifndef FF
|
||||
// interp->getInterpolatedPosition(cl.x,cl.y, cl.get_cluster(),int_x, int_y);
|
||||
interp->getInterpolatedPosition(cl.x,cl.y, etax, etay, quad,int_x, int_y);
|
||||
// cout <<"**************"<< endl;
|
||||
// cout << cl.x << " " << cl.y << " " << sum << endl;
|
||||
// cl.print();
|
||||
// cout << int_x << " " << int_y << endl;
|
||||
// cout <<"**************"<< endl;
|
||||
// if (etax!=0 && etay!=0 && etax!=1 && etay!=1)
|
||||
interp->addToImage(int_x, int_y);
|
||||
if (int_x<0 || int_y<0 || int_x>400 || int_y>400) {
|
||||
cout <<"**************"<< endl;
|
||||
cout << cl.x << " " << cl.y << " " << sum << endl;
|
||||
cl.print();
|
||||
cout << int_x << " " << int_y << endl;
|
||||
cout <<"**************"<< endl;
|
||||
}
|
||||
#endif
|
||||
#ifdef FF
|
||||
// interp->addToFlatField(cl.get_cluster(), etax, etay);
|
||||
// #ifdef UCL
|
||||
// if (cl.x>50)
|
||||
// #endif
|
||||
// if (etax!=0 && etay!=0 && etax!=1 && etay!=1)
|
||||
interp->addToFlatField(etax, etay);
|
||||
// if (etax==0 || etay==0) cout << cl.x << " " << cl.y << endl;
|
||||
|
||||
#endif
|
||||
// #ifdef SOLEIL
|
||||
// }
|
||||
// #endif
|
||||
|
||||
if (nph%1000000==0) cout << nph << endl;
|
||||
if (nph%10000000==0) {
|
||||
#ifndef FF
|
||||
interp->writeInterpolatedImage(outfname);
|
||||
#endif
|
||||
#ifdef FF
|
||||
interp->writeFlatField(outfname);
|
||||
#endif
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
fclose(f);
|
||||
#ifdef FF
|
||||
interp->writeFlatField(outfname);
|
||||
#endif
|
||||
|
||||
#ifndef FF
|
||||
interp->writeInterpolatedImage(outfname);
|
||||
|
||||
img=interp->getInterpolatedImage();
|
||||
for (ix=0; ix<NC; ix++) {
|
||||
for (iy=0; iy<NR; iy++) {
|
||||
for (isx=0; isx<nsubpix; isx++) {
|
||||
for (isy=0; isy<nsubpix; isy++) {
|
||||
totimg[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)]+=img[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)];
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
cout << "Read " << nframes << " frames (first frame: " << f0 << " last frame: " << lastframe << " delta:" << lastframe-f0 << ") nph="<< nph <<endl;
|
||||
interp->clearInterpolatedImage();
|
||||
#endif
|
||||
|
||||
} else
|
||||
cout << "could not open file " << infname << endl;
|
||||
}
|
||||
#ifndef FF
|
||||
sprintf(outfname,argv[3],11111);
|
||||
WriteToTiff(totimg, outfname,NC*nsubpix,NR*nsubpix);
|
||||
#endif
|
||||
|
||||
#ifdef FF
|
||||
interp->writeFlatField(outfname);
|
||||
#endif
|
||||
|
||||
cout << "Filled " << nph << " (/"<< totph <<") " << endl;
|
||||
return 0;
|
||||
}
|
||||
|
||||
@ -0,0 +1,453 @@
|
||||
//#include "sls/ansi.h"
|
||||
#include <iostream>
|
||||
#define CORR
|
||||
|
||||
#define C_GHOST 0.0004
|
||||
|
||||
#define CM_ROWS 50
|
||||
|
||||
//#define VERSION_V1
|
||||
|
||||
//#include "moench03T1ZmqData.h"
|
||||
#ifdef NEWRECEIVER
|
||||
#ifndef RECT
|
||||
#include "moench03T1ReceiverDataNew.h"
|
||||
#endif
|
||||
|
||||
#ifdef RECT
|
||||
#include "moench03T1ReceiverDataNewRect.h"
|
||||
#endif
|
||||
|
||||
#endif
|
||||
|
||||
|
||||
#ifdef CSAXS_FP
|
||||
#include "moench03T1ReceiverData.h"
|
||||
#endif
|
||||
#ifdef OLDDATA
|
||||
#include "moench03Ctb10GbT1Data.h"
|
||||
#endif
|
||||
|
||||
// #include "interpolatingDetector.h"
|
||||
//#include "etaInterpolationPosXY.h"
|
||||
// #include "linearInterpolation.h"
|
||||
// #include "noInterpolation.h"
|
||||
#include "multiThreadedCountingDetector.h"
|
||||
//#include "multiThreadedAnalogDetector.h"
|
||||
#include "singlePhotonDetector.h"
|
||||
#include "moench03GhostSummation.h"
|
||||
#include "moench03CommonMode.h"
|
||||
//#include "interpolatingDetector.h"
|
||||
|
||||
#include <stdio.h>
|
||||
#include <map>
|
||||
#include <fstream>
|
||||
#include <sys/stat.h>
|
||||
|
||||
#include <ctime>
|
||||
using namespace std;
|
||||
|
||||
|
||||
int main(int argc, char *argv[]) {
|
||||
|
||||
|
||||
if (argc<4) {
|
||||
cout << "Usage is " << argv[0] << "indir outdir fname [runmin] [runmax] [pedfile] [threshold] [nframes] [xmin xmax ymin ymax] [gainmap]" << endl;
|
||||
cout << "threshold <0 means analog; threshold=0 means cluster finder; threshold>0 means photon counting" << endl;
|
||||
cout << "nframes <0 means sum everything; nframes=0 means one file per run; nframes>0 means one file every nframes" << endl;
|
||||
return 1;
|
||||
}
|
||||
|
||||
int p=10000;
|
||||
int fifosize=1000;
|
||||
int nthreads=10;
|
||||
int nsubpix=25;
|
||||
int etabins=nsubpix*10;
|
||||
double etamin=-1, etamax=2;
|
||||
int csize=3;
|
||||
int save=1;
|
||||
int nsigma=5;
|
||||
int nped=10000;
|
||||
int ndark=100;
|
||||
int ok;
|
||||
int iprog=0;
|
||||
|
||||
int cf=0;
|
||||
|
||||
#ifdef NEWRECEIVER
|
||||
#ifdef RECT
|
||||
cout << "Should be rectangular!" <<endl;
|
||||
#endif
|
||||
moench03T1ReceiverDataNew *decoder=new moench03T1ReceiverDataNew();
|
||||
cout << "RECEIVER DATA WITH ONE HEADER!"<<endl;
|
||||
#endif
|
||||
|
||||
#ifdef CSAXS_FP
|
||||
moench03T1ReceiverData *decoder=new moench03T1ReceiverData();
|
||||
cout << "RECEIVER DATA WITH ALL HEADERS!"<<endl;
|
||||
#endif
|
||||
|
||||
#ifdef OLDDATA
|
||||
moench03Ctb10GbT1Data *decoder=new moench03Ctb10GbT1Data();
|
||||
cout << "OLD RECEIVER DATA!"<<endl;
|
||||
#endif
|
||||
|
||||
int nx=400, ny=400;
|
||||
|
||||
decoder->getDetectorSize(nx,ny);
|
||||
|
||||
int ncol_cm=CM_ROWS;
|
||||
double xt_ghost=C_GHOST;
|
||||
moench03CommonMode *cm=NULL;
|
||||
moench03GhostSummation *gs;
|
||||
double *gainmap=NULL;
|
||||
float *gm;
|
||||
|
||||
|
||||
|
||||
int size = 327680;////atoi(argv[3]);
|
||||
|
||||
int* image;
|
||||
//int* image =new int[327680/sizeof(int)];
|
||||
|
||||
int ff, np;
|
||||
//cout << " data size is " << dsize;
|
||||
|
||||
|
||||
|
||||
ifstream filebin;
|
||||
char *indir=argv[1];
|
||||
char *outdir=argv[2];
|
||||
char *fformat=argv[3];
|
||||
int runmin=0;
|
||||
|
||||
// cout << "argc is " << argc << endl;
|
||||
if (argc>=5) {
|
||||
runmin=atoi(argv[4]);
|
||||
}
|
||||
|
||||
int runmax=runmin;
|
||||
|
||||
if (argc>=6) {
|
||||
runmax=atoi(argv[5]);
|
||||
}
|
||||
|
||||
char *pedfile=NULL;
|
||||
if (argc>=7) {
|
||||
pedfile=argv[6];
|
||||
}
|
||||
double thr=0;
|
||||
double thr1=1;
|
||||
|
||||
if (argc>=8) {
|
||||
thr=atof(argv[7]);
|
||||
}
|
||||
|
||||
|
||||
int nframes=0;
|
||||
|
||||
if (argc>=9) {
|
||||
nframes=atoi(argv[8]);
|
||||
}
|
||||
|
||||
int xmin=0, xmax=nx, ymin=0, ymax=ny;
|
||||
if (argc>=13) {
|
||||
xmin=atoi(argv[9]);
|
||||
xmax=atoi(argv[10]);
|
||||
ymin=atoi(argv[11]);
|
||||
ymax=atoi(argv[12]);
|
||||
}
|
||||
|
||||
|
||||
char *gainfname=NULL;
|
||||
if (argc>13) {
|
||||
gainfname=argv[13];
|
||||
cout << "Gain map file name is: " << gainfname << endl;
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
char ffname[10000];
|
||||
char fname[10000];
|
||||
char imgfname[10000];
|
||||
char cfname[10000];
|
||||
char fn[10000];
|
||||
|
||||
std::time_t end_time;
|
||||
|
||||
FILE *of=NULL;
|
||||
cout << "input directory is " << indir << endl;
|
||||
cout << "output directory is " << outdir << endl;
|
||||
cout << "input file is " << fformat << endl;
|
||||
cout << "runmin is " << runmin << endl;
|
||||
cout << "runmax is " << runmax << endl;
|
||||
if (pedfile)
|
||||
cout << "pedestal file is " << pedfile << endl;
|
||||
if (thr>0)
|
||||
cout << "threshold is " << thr << endl;
|
||||
cout << "Nframes is " << nframes << endl;
|
||||
|
||||
uint32 nnx, nny;
|
||||
double *gmap;
|
||||
|
||||
// if (gainfname) {
|
||||
// gm=ReadFromTiff(gainfname, nny, nnx);
|
||||
// if (gm && nnx==nx && nny==ny) {
|
||||
// gmap=new double[nx*ny];
|
||||
// for (int i=0; i<nx*ny; i++) {
|
||||
// gmap[i]=gm[i];
|
||||
// }
|
||||
// delete gm;
|
||||
// } else
|
||||
// cout << "Could not open gain map " << gainfname << endl;
|
||||
// }
|
||||
|
||||
#ifdef CORR
|
||||
cout << "Applying common mode " << ncol_cm << endl;
|
||||
cm=new moench03CommonMode(ncol_cm);
|
||||
|
||||
|
||||
cout << "Applying ghost corrections " << xt_ghost << endl;
|
||||
gs=new moench03GhostSummation(decoder, xt_ghost);
|
||||
#endif
|
||||
|
||||
singlePhotonDetector *filter=new singlePhotonDetector(decoder,csize, nsigma, 1, cm, nped, 200, -1, -1, gainmap, gs);
|
||||
|
||||
if (gainfname) {
|
||||
|
||||
if (filter->readGainMap(gainfname))
|
||||
cout << "using gain map " << gainfname << endl;
|
||||
else
|
||||
cout << "Could not open gain map " << gainfname << endl;
|
||||
} else
|
||||
thr=0.15*thr;
|
||||
filter->newDataSet();
|
||||
int dsize=decoder->getDataSize();
|
||||
|
||||
|
||||
char data[dsize];
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
//#ifndef ANALOG
|
||||
if (thr>0) {
|
||||
cout << "threshold is " << thr << endl;
|
||||
//#ifndef ANALOG
|
||||
filter->setThreshold(thr);
|
||||
//#endif
|
||||
cf=0;
|
||||
|
||||
} else
|
||||
cf=1;
|
||||
//#endif
|
||||
|
||||
|
||||
filter->setROI(xmin,xmax,ymin,ymax);
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
|
||||
char* buff;
|
||||
|
||||
// multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
|
||||
multiThreadedCountingDetector *mt=new multiThreadedCountingDetector(filter,nthreads,fifosize);
|
||||
#ifndef ANALOG
|
||||
mt->setDetectorMode(ePhotonCounting);
|
||||
cout << "Counting!" << endl;
|
||||
if (thr>0) {
|
||||
cf=0;
|
||||
}
|
||||
#endif
|
||||
//{
|
||||
#ifdef ANALOG
|
||||
mt->setDetectorMode(eAnalog);
|
||||
cout << "Analog!" << endl;
|
||||
cf=0;
|
||||
//thr1=thr;
|
||||
#endif
|
||||
// }
|
||||
|
||||
mt->StartThreads();
|
||||
mt->popFree(buff);
|
||||
|
||||
|
||||
// cout << "mt " << endl;
|
||||
|
||||
int ifr=0;
|
||||
|
||||
double ped[nx*ny], *ped1;
|
||||
|
||||
|
||||
if (pedfile) {
|
||||
|
||||
cout << "PEDESTAL " << endl;
|
||||
sprintf(imgfname,"%s/pedestals.tiff",outdir);
|
||||
|
||||
if (string(pedfile).find(".tif")==std::string::npos){
|
||||
sprintf(fname,"%s.raw",pedfile);
|
||||
cout << fname << endl ;
|
||||
std::time(&end_time);
|
||||
cout << "aaa" << std::ctime(&end_time) << endl;
|
||||
|
||||
|
||||
mt->setFrameMode(ePedestal);
|
||||
// sprintf(fn,fformat,irun);
|
||||
filebin.open((const char *)(fname), ios::in | ios::binary);
|
||||
// //open file
|
||||
if (filebin.is_open()){
|
||||
ff=-1;
|
||||
while (decoder->readNextFrame(filebin, ff, np,buff)) {
|
||||
if (np==40) {
|
||||
mt->pushData(buff);
|
||||
mt->nextThread();
|
||||
mt->popFree(buff);
|
||||
ifr++;
|
||||
if (ifr%100==0)
|
||||
cout << ifr << " " << ff << " " << np << endl;
|
||||
} else
|
||||
cout << ifr << " " << ff << " " << np << endl;
|
||||
ff=-1;
|
||||
}
|
||||
filebin.close();
|
||||
while (mt->isBusy()) {;}
|
||||
|
||||
} else
|
||||
cout << "Could not open pedestal file "<< fname << " for reading " << endl;
|
||||
} else {
|
||||
float *pp=ReadFromTiff(pedfile, nny, nnx);
|
||||
if (pp && nnx==nx && nny==ny) {
|
||||
for (int i=0; i<nx*ny; i++) {
|
||||
ped[i]=pp[i];
|
||||
}
|
||||
delete [] pp;
|
||||
mt->setPedestal(ped);
|
||||
// ped1=mt->getPedestal();
|
||||
|
||||
// for (int i=0; i<nx*ny; i++) {
|
||||
|
||||
// cout << ped[i]<<"/"<<ped1[i] << " " ;
|
||||
// }
|
||||
cout << "Pedestal set from tiff file " << pedfile << endl;
|
||||
} else {
|
||||
cout << "Could not open pedestal tiff file "<< pedfile << " for reading " << endl;
|
||||
}
|
||||
}
|
||||
mt->writePedestal(imgfname);
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
}
|
||||
|
||||
|
||||
|
||||
ifr=0;
|
||||
int ifile=0;
|
||||
|
||||
mt->setFrameMode(eFrame);
|
||||
|
||||
for (int irun=runmin; irun<=runmax; irun++) {
|
||||
cout << "DATA " ;
|
||||
// sprintf(fn,fformat,irun);
|
||||
sprintf(ffname,"%s/%s.raw",indir,fformat);
|
||||
sprintf(fname,ffname,irun);
|
||||
sprintf(ffname,"%s/%s.tiff",outdir,fformat);
|
||||
sprintf(imgfname,ffname,irun);
|
||||
sprintf(ffname,"%s/%s.clust",outdir,fformat);
|
||||
sprintf(cfname,ffname,irun);
|
||||
cout << fname << " " ;
|
||||
cout << imgfname << endl;
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
// cout << fname << " " << outfname << " " << imgfname << endl;
|
||||
filebin.open((const char *)(fname), ios::in | ios::binary);
|
||||
// //open file
|
||||
ifile=0;
|
||||
if (filebin.is_open()){
|
||||
if (thr<=0 && cf!=0) { //cluster finder
|
||||
if (of==NULL) {
|
||||
of=fopen(cfname,"w");
|
||||
if (of) {
|
||||
mt->setFilePointer(of);
|
||||
cout << "file pointer set " << endl;
|
||||
} else {
|
||||
cout << "Could not open "<< cfname << " for writing " << endl;
|
||||
mt->setFilePointer(NULL);
|
||||
return 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
// //while read frame
|
||||
ff=-1;
|
||||
ifr=0;
|
||||
while (decoder->readNextFrame(filebin, ff, np,buff)) {
|
||||
if (np==40) {
|
||||
// cout << "*"<<ifr++<<"*"<<ff<< endl;
|
||||
// cout << ff << " " << np << endl;
|
||||
// //push
|
||||
mt->pushData(buff);
|
||||
// // //pop
|
||||
mt->nextThread();
|
||||
// // // cout << " " << (void*)buff;
|
||||
mt->popFree(buff);
|
||||
|
||||
|
||||
|
||||
|
||||
ifr++;
|
||||
if (ifr%100==0) cout << ifr << " " << ff << endl;
|
||||
if (nframes>0) {
|
||||
if (ifr%nframes==0) {
|
||||
//The name has an additional "_fXXXXX" at the end, where "XXXXX" is the initial frame number of the image (0,1000,2000...)
|
||||
|
||||
sprintf(ffname,"%s/%s_f%05d.tiff",outdir,fformat,ifile);
|
||||
sprintf(imgfname,ffname,irun);
|
||||
//cout << "Writing tiff to " << imgfname << " " << thr1 << endl;
|
||||
mt->writeImage(imgfname, thr1);
|
||||
mt->clearImage();
|
||||
ifile++;
|
||||
}
|
||||
}
|
||||
} else
|
||||
cout << ifr << " " << ff << " " << np << endl;
|
||||
ff=-1;
|
||||
}
|
||||
cout << "--" << endl;
|
||||
filebin.close();
|
||||
// //close file
|
||||
// //join threads
|
||||
while (mt->isBusy()) {;}
|
||||
if (nframes>=0) {
|
||||
if (nframes>0) {
|
||||
sprintf(ffname,"%s/%s_f%05d.tiff",outdir,fformat,ifile);
|
||||
sprintf(imgfname,ffname,irun);
|
||||
} else {
|
||||
sprintf(ffname,"%s/%s.tiff",outdir,fformat);
|
||||
sprintf(imgfname,ffname,irun);
|
||||
}
|
||||
cout << "Writing tiff to " << imgfname << " " << thr1 <<endl;
|
||||
mt->writeImage(imgfname, thr1);
|
||||
mt->clearImage();
|
||||
if (of) {
|
||||
fclose(of);
|
||||
of=NULL;
|
||||
mt->setFilePointer(NULL);
|
||||
}
|
||||
}
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
} else
|
||||
cout << "Could not open "<< fname << " for reading " << endl;
|
||||
}
|
||||
if (nframes<0){
|
||||
sprintf(ffname,"%s/%s.tiff",outdir,fformat);
|
||||
strcpy(imgfname,ffname);
|
||||
cout << "Writing tiff to " << imgfname << " " << thr1 <<endl;
|
||||
mt->writeImage(imgfname, thr1);
|
||||
}
|
||||
|
||||
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
1026
slsDetectorCalibration/jungfrauExecutables/jungfrauZmqProcess.cpp
Normal file
1026
slsDetectorCalibration/jungfrauExecutables/jungfrauZmqProcess.cpp
Normal file
File diff suppressed because it is too large
Load Diff
@ -17,7 +17,7 @@
|
||||
#include <pthread.h>
|
||||
|
||||
#include "analogDetector.h"
|
||||
#include "sls/CircularFifo.h"
|
||||
#include "circularFifo.h"
|
||||
#include <unistd.h>
|
||||
#include <stdio.h>
|
||||
#include <stdlib.h>
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user