mirror of
https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2025-06-12 12:57:13 +02:00
Dhanya Thattil
@ -1,6 +1,6 @@
|
||||
// SPDX-License-Identifier: LGPL-3.0-or-other
|
||||
// Copyright (C) 2021 Contributors to the SLS Detector Package
|
||||
//#include "sls/ansi.h"
|
||||
// #include "sls/ansi.h"
|
||||
#include <iostream>
|
||||
#undef CORR
|
||||
|
||||
@ -10,7 +10,8 @@
|
||||
|
||||
#define RAWDATA
|
||||
|
||||
#if !defined JFSTRX && !defined JFSTRXOLD && !defined JFSTRXCHIP1 && !defined JFSTRXCHIP6
|
||||
#if !defined JFSTRX && !defined JFSTRXOLD && !defined JFSTRXCHIP1 && \
|
||||
!defined JFSTRXCHIP6
|
||||
#ifndef MODULE
|
||||
#include "jungfrauHighZSingleChipData.h"
|
||||
#endif
|
||||
@ -38,34 +39,38 @@
|
||||
#include <sys/stat.h>
|
||||
|
||||
#include <ctime>
|
||||
//using namespace std;
|
||||
// using namespace std;
|
||||
|
||||
int main(int argc, char *argv[]) {
|
||||
|
||||
if (argc < 5) {
|
||||
std::cout << "Usage is " << argv[0]
|
||||
<< "indir outdir fname(with formatting, no extension) fextension [runmin] [runmax] [pedfile (raw or tiff)] [threshold] "
|
||||
"[nframes] [xmin xmax ymin ymax] [gainmap]"
|
||||
<< std::endl;
|
||||
std::cout << "threshold <0 means analog; threshold=0 means cluster finder; "
|
||||
"threshold>0 means photon counting"
|
||||
<< std::endl;
|
||||
std::cout << "nframes <0 means sum everything; nframes=0 means one file per "
|
||||
"run; nframes>0 means one file every nframes"
|
||||
<< std::endl;
|
||||
std::cout
|
||||
<< "Usage is " << argv[0]
|
||||
<< "indir outdir fname(with formatting, no extension) fextension "
|
||||
"[runmin] [runmax] [pedfile (raw or tiff)] [threshold] "
|
||||
"[nframes] [xmin xmax ymin ymax] [gainmap]"
|
||||
<< std::endl;
|
||||
std::cout
|
||||
<< "threshold <0 means analog; threshold=0 means cluster finder; "
|
||||
"threshold>0 means photon counting"
|
||||
<< std::endl;
|
||||
std::cout
|
||||
<< "nframes <0 means sum everything; nframes=0 means one file per "
|
||||
"run; nframes>0 means one file every nframes"
|
||||
<< std::endl;
|
||||
return 1;
|
||||
}
|
||||
|
||||
int fifosize = 1000;
|
||||
int nthreads = 10;
|
||||
int csize = 3; //3
|
||||
int csize = 3; // 3
|
||||
int nsigma = 5;
|
||||
int nped = 10000;
|
||||
|
||||
int cf = 0;
|
||||
|
||||
double *gainmap = NULL;
|
||||
//float *gm;
|
||||
// float *gm;
|
||||
|
||||
int ff, np;
|
||||
// cout << " data size is " << dsize;
|
||||
@ -110,9 +115,9 @@ int main(int argc, char *argv[]) {
|
||||
char imgfname[10000];
|
||||
char cfname[10000];
|
||||
|
||||
|
||||
//Define decoders...
|
||||
#if !defined JFSTRX && !defined JFSTRXOLD && !defined JFSTRXCHIP1 && !defined JFSTRXCHIP6
|
||||
// Define decoders...
|
||||
#if !defined JFSTRX && !defined JFSTRXOLD && !defined JFSTRXCHIP1 && \
|
||||
!defined JFSTRXCHIP6
|
||||
#ifndef MODULE
|
||||
jungfrauHighZSingleChipData *decoder = new jungfrauHighZSingleChipData();
|
||||
int nx = 256, ny = 256;
|
||||
@ -125,67 +130,71 @@ int main(int argc, char *argv[]) {
|
||||
|
||||
#ifdef JFSTRX
|
||||
cout << "Jungfrau strixel full module readout" << endl;
|
||||
//ROI
|
||||
uint16_t xxmin=0;
|
||||
uint16_t xxmax=0;
|
||||
uint16_t yymin=0;
|
||||
uint16_t yymax=0;
|
||||
// ROI
|
||||
uint16_t xxmin = 0;
|
||||
uint16_t xxmax = 0;
|
||||
uint16_t yymin = 0;
|
||||
uint16_t yymax = 0;
|
||||
|
||||
#ifndef ALDO
|
||||
using header = sls::defs::sls_receiver_header;
|
||||
//check if there is a roi in the header
|
||||
// check if there is a roi in the header
|
||||
typedef struct {
|
||||
uint16_t xmin;
|
||||
uint16_t xmax;
|
||||
uint16_t ymin;
|
||||
uint16_t ymax;
|
||||
uint16_t xmin;
|
||||
uint16_t xmax;
|
||||
uint16_t ymin;
|
||||
uint16_t ymax;
|
||||
} receiverRoi_compact;
|
||||
receiverRoi_compact croi;
|
||||
sprintf(ffname, "%s/%s.%s", indir, fformat, fext);
|
||||
sprintf(fname, (const char*)ffname, runmin);
|
||||
std::cout << "Reading header of file " << fname << " to check for ROI " << std::endl;
|
||||
sprintf(fname, (const char *)ffname, runmin);
|
||||
std::cout << "Reading header of file " << fname << " to check for ROI "
|
||||
<< std::endl;
|
||||
filebin.open((const char *)(fname), ios::in | ios::binary);
|
||||
if (filebin.is_open()) {
|
||||
header hbuffer;
|
||||
std::cout << "sizeof(header) = " << sizeof(header) << std::endl;
|
||||
if ( filebin.read( (char *)&hbuffer, sizeof(header) ) ) {
|
||||
memcpy(&croi, &hbuffer.detHeader.detSpec1, 8);
|
||||
std::cout << "Read ROI [" << croi.xmin << ", " << croi.xmax << ", " << croi.ymin << ", " << croi.ymax << "]" << std::endl;
|
||||
xxmin = croi.xmin;
|
||||
xxmax = croi.xmax;
|
||||
yymin = croi.ymin;
|
||||
yymax = croi.ymax;
|
||||
} else
|
||||
std::cout << "reading error" << std::endl;
|
||||
filebin.close();
|
||||
header hbuffer;
|
||||
std::cout << "sizeof(header) = " << sizeof(header) << std::endl;
|
||||
if (filebin.read((char *)&hbuffer, sizeof(header))) {
|
||||
memcpy(&croi, &hbuffer.detHeader.detSpec1, 8);
|
||||
std::cout << "Read ROI [" << croi.xmin << ", " << croi.xmax << ", "
|
||||
<< croi.ymin << ", " << croi.ymax << "]" << std::endl;
|
||||
xxmin = croi.xmin;
|
||||
xxmax = croi.xmax;
|
||||
yymin = croi.ymin;
|
||||
yymax = croi.ymax;
|
||||
} else
|
||||
std::cout << "reading error" << std::endl;
|
||||
filebin.close();
|
||||
} else
|
||||
std::cout << "Could not open " << fname << " for reading " << std::endl;
|
||||
std::cout << "Could not open " << fname << " for reading " << std::endl;
|
||||
#endif
|
||||
|
||||
jungfrauLGADStrixelsData *decoder = new jungfrauLGADStrixelsData( xxmin, xxmax, yymin, yymax );
|
||||
int nx = 1024/3, ny = 512*5;
|
||||
jungfrauLGADStrixelsData *decoder =
|
||||
new jungfrauLGADStrixelsData(xxmin, xxmax, yymin, yymax);
|
||||
int nx = 1024 / 3, ny = 512 * 5;
|
||||
#endif
|
||||
#ifdef JFSTRXCHIP1
|
||||
std::cout << "Jungfrau strixel LGAD single chip 1" << std::endl;
|
||||
jungfrauLGADStrixelsDataSingleChip *decoder = new jungfrauLGADStrixelsDataSingleChip(1);
|
||||
int nx = 256/3, ny = 256*5;
|
||||
jungfrauLGADStrixelsDataSingleChip *decoder =
|
||||
new jungfrauLGADStrixelsDataSingleChip(1);
|
||||
int nx = 256 / 3, ny = 256 * 5;
|
||||
#endif
|
||||
#ifdef JFSTRXCHIP6
|
||||
std::cout << "Jungfrau strixel LGAD single chip 6" << std::endl;
|
||||
jungfrauLGADStrixelsDataSingleChip *decoder = new jungfrauLGADStrixelsDataSingleChip(6);
|
||||
int nx = 256/3, ny = 256*5;
|
||||
jungfrauLGADStrixelsDataSingleChip *decoder =
|
||||
new jungfrauLGADStrixelsDataSingleChip(6);
|
||||
int nx = 256 / 3, ny = 256 * 5;
|
||||
#endif
|
||||
#ifdef JFSTRXOLD
|
||||
std::cout << "Jungfrau strixels old design" << std::endl;
|
||||
jungfrauStrixelsHalfModuleOldDesign *decoder = new jungfrauStrixelsHalfModuleOldDesign();
|
||||
int nx = 1024*3, ny = 512/3;
|
||||
jungfrauStrixelsHalfModuleOldDesign *decoder =
|
||||
new jungfrauStrixelsHalfModuleOldDesign();
|
||||
int nx = 1024 * 3, ny = 512 / 3;
|
||||
#endif
|
||||
|
||||
|
||||
decoder->getDetectorSize(nx, ny);
|
||||
std::cout << "Detector size is " << nx << " " << ny << std::endl;
|
||||
|
||||
|
||||
int xmin = 0, xmax = nx, ymin = 0, ymax = ny;
|
||||
if (argc >= 14) {
|
||||
xmin = atoi(argv[10]);
|
||||
@ -193,12 +202,13 @@ int main(int argc, char *argv[]) {
|
||||
ymin = atoi(argv[12]);
|
||||
ymax = atoi(argv[13]);
|
||||
}
|
||||
std::cout << xmin << " " << xmax << " " << ymin << " " << ymax << " " << std::endl;
|
||||
std::cout << xmin << " " << xmax << " " << ymin << " " << ymax << " "
|
||||
<< std::endl;
|
||||
|
||||
char *gainfname = NULL;
|
||||
if (argc > 14) {
|
||||
gainfname = argv[14];
|
||||
std::cout << "Gain map file name is: " << gainfname << std::endl;
|
||||
std::cout << "Gain map file name is: " << gainfname << std::endl;
|
||||
}
|
||||
|
||||
std::time_t end_time;
|
||||
@ -210,34 +220,32 @@ int main(int argc, char *argv[]) {
|
||||
std::cout << "runmin is " << runmin << std::endl;
|
||||
std::cout << "runmax is " << runmax << std::endl;
|
||||
if (pedfile)
|
||||
std::cout << "pedestal file is " << pedfile << std::endl;
|
||||
std::cout << "pedestal file is " << pedfile << std::endl;
|
||||
if (thr > 0)
|
||||
std::cout << "threshold is " << thr << std::endl;
|
||||
std::cout << "threshold is " << thr << std::endl;
|
||||
std::cout << "Nframes is " << nframes << std::endl;
|
||||
|
||||
//std::cout << "HHHEEEEEEEEEEEEEEEEEEEEEEERE!!!!!" << std::endl;
|
||||
// std::cout << "HHHEEEEEEEEEEEEEEEEEEEEEEERE!!!!!" << std::endl;
|
||||
uint32_t nnx, nny;
|
||||
|
||||
|
||||
|
||||
singlePhotonDetector *filter = new singlePhotonDetector(
|
||||
decoder, 3, nsigma, 1, NULL, nped, 200, -1, -1, gainmap, NULL);
|
||||
|
||||
if (gainfname) {
|
||||
|
||||
if (filter->readGainMap(gainfname))
|
||||
std::cout << "using gain map " << gainfname << std::endl;
|
||||
std::cout << "using gain map " << gainfname << std::endl;
|
||||
else
|
||||
std::cout << "Could not open gain map " << gainfname << std::endl;
|
||||
std::cout << "Could not open gain map " << gainfname << std::endl;
|
||||
} else
|
||||
thr = 0.15 * thr;
|
||||
filter->newDataSet();
|
||||
//int dsize = decoder->getDataSize();
|
||||
// int dsize = decoder->getDataSize();
|
||||
|
||||
if (thr > 0) {
|
||||
std::cout << "threshold is " << thr << std::endl;
|
||||
filter->setThreshold(thr);
|
||||
cf = 0;
|
||||
std::cout << "threshold is " << thr << std::endl;
|
||||
filter->setThreshold(thr);
|
||||
cf = 0;
|
||||
|
||||
} else
|
||||
cf = 1;
|
||||
@ -252,7 +260,7 @@ int main(int argc, char *argv[]) {
|
||||
// multiThreadedAnalogDetector(filter,nthreads,fifosize);
|
||||
multiThreadedCountingDetector *mt =
|
||||
new multiThreadedCountingDetector(filter, nthreads, fifosize);
|
||||
mt->setClusterSize(csize,csize);
|
||||
mt->setClusterSize(csize, csize);
|
||||
|
||||
#ifndef ANALOG
|
||||
mt->setDetectorMode(ePhotonCounting);
|
||||
@ -278,186 +286,193 @@ int main(int argc, char *argv[]) {
|
||||
int ifr = 0;
|
||||
|
||||
char froot[1000];
|
||||
double *ped=new double[nx * ny];//, *ped1;
|
||||
double *ped = new double[nx * ny]; //, *ped1;
|
||||
|
||||
int pos,pos1;
|
||||
int pos, pos1;
|
||||
|
||||
if (pedfile) {
|
||||
|
||||
if (string(pedfile).find(".dat") != std::string::npos) {
|
||||
pos1=string(pedfile).rfind("/");
|
||||
strcpy(froot,pedfile+pos1);
|
||||
pos=string(froot).find(".dat");
|
||||
froot[pos]='\0';
|
||||
}
|
||||
if (string(pedfile).find(".dat") != std::string::npos) {
|
||||
pos1 = string(pedfile).rfind("/");
|
||||
strcpy(froot, pedfile + pos1);
|
||||
pos = string(froot).find(".dat");
|
||||
froot[pos] = '\0';
|
||||
}
|
||||
|
||||
std::cout << "PEDESTAL " << std::endl;
|
||||
// sprintf(imgfname, "%s/pedestals.tiff", outdir);
|
||||
std::cout << "PEDESTAL " << std::endl;
|
||||
// sprintf(imgfname, "%s/pedestals.tiff", outdir);
|
||||
|
||||
if (string(pedfile).find(".tif") == std::string::npos) {
|
||||
sprintf(fname, "%s", pedfile);
|
||||
std::cout << fname << std::endl;
|
||||
std::time(&end_time);
|
||||
std::cout << "aaa" << std::ctime(&end_time) << std::endl;
|
||||
|
||||
mt->setFrameMode(ePedestal);
|
||||
// sprintf(fn,fformat,irun);
|
||||
filebin.open((const char *)(fname), ios::in | ios::binary);
|
||||
// //open file
|
||||
if (filebin.is_open()) {
|
||||
std::cout << "bbbb" << std::ctime(&end_time) << std::endl;
|
||||
|
||||
ff = -1;
|
||||
while (decoder->readNextFrame(filebin, ff, np, buff)) {
|
||||
// if (np == 40) {
|
||||
if ((ifr+1) % 100 == 0) {
|
||||
std::cout << " ****" << decoder->getValue(buff,20,20);// << endl;
|
||||
}
|
||||
mt->pushData(buff);
|
||||
mt->nextThread();
|
||||
mt->popFree(buff);
|
||||
ifr++;
|
||||
if (ifr % 100 == 0) {
|
||||
std::cout << " ****" << ifr << " " << ff << " " << np << std::endl;
|
||||
} //else
|
||||
//cout << ifr << " " << ff << " " << np << endl;
|
||||
if (ifr>=1000)
|
||||
break;
|
||||
ff = -1;
|
||||
}
|
||||
filebin.close();
|
||||
while (mt->isBusy()) {
|
||||
;
|
||||
}
|
||||
|
||||
sprintf(imgfname, "%s/%s_ped.tiff", outdir, froot);
|
||||
mt->writePedestal(imgfname);
|
||||
sprintf(imgfname, "%s/%s_rms.tiff", outdir, froot);
|
||||
mt->writePedestalRMS(imgfname);
|
||||
|
||||
} else
|
||||
std::cout << "Could not open pedestal file " << fname
|
||||
<< " for reading " << std::endl;
|
||||
} else {
|
||||
float *pp = ReadFromTiff(pedfile, nny, nnx);
|
||||
if (pp && (int)nnx == nx && (int)nny == ny) {
|
||||
for (int i = 0; i < nx * ny; i++) {
|
||||
ped[i] = pp[i];
|
||||
}
|
||||
delete[] pp;
|
||||
mt->setPedestal(ped);
|
||||
std::cout << "Pedestal set from tiff file " << pedfile << std::endl;
|
||||
} else {
|
||||
std::cout << "Could not open pedestal tiff file " << pedfile
|
||||
<< " for reading " << std::endl;
|
||||
}
|
||||
}
|
||||
std::time(&end_time);
|
||||
std::cout << std::ctime(&end_time) << std::endl;
|
||||
if (string(pedfile).find(".tif") == std::string::npos) {
|
||||
sprintf(fname, "%s", pedfile);
|
||||
std::cout << fname << std::endl;
|
||||
std::time(&end_time);
|
||||
std::cout << "aaa" << std::ctime(&end_time) << std::endl;
|
||||
|
||||
mt->setFrameMode(ePedestal);
|
||||
// sprintf(fn,fformat,irun);
|
||||
filebin.open((const char *)(fname), ios::in | ios::binary);
|
||||
// //open file
|
||||
if (filebin.is_open()) {
|
||||
std::cout << "bbbb" << std::ctime(&end_time) << std::endl;
|
||||
|
||||
ff = -1;
|
||||
while (decoder->readNextFrame(filebin, ff, np, buff)) {
|
||||
// if (np == 40) {
|
||||
if ((ifr + 1) % 100 == 0) {
|
||||
std::cout
|
||||
<< " ****"
|
||||
<< decoder->getValue(buff, 20, 20); // << endl;
|
||||
}
|
||||
mt->pushData(buff);
|
||||
mt->nextThread();
|
||||
mt->popFree(buff);
|
||||
ifr++;
|
||||
if (ifr % 100 == 0) {
|
||||
std::cout << " ****" << ifr << " " << ff << " " << np
|
||||
<< std::endl;
|
||||
} // else
|
||||
// cout << ifr << " " << ff << " " << np << endl;
|
||||
if (ifr >= 1000)
|
||||
break;
|
||||
ff = -1;
|
||||
}
|
||||
filebin.close();
|
||||
while (mt->isBusy()) {
|
||||
;
|
||||
}
|
||||
|
||||
sprintf(imgfname, "%s/%s_ped.tiff", outdir, froot);
|
||||
mt->writePedestal(imgfname);
|
||||
sprintf(imgfname, "%s/%s_rms.tiff", outdir, froot);
|
||||
mt->writePedestalRMS(imgfname);
|
||||
|
||||
} else
|
||||
std::cout << "Could not open pedestal file " << fname
|
||||
<< " for reading " << std::endl;
|
||||
} else {
|
||||
float *pp = ReadFromTiff(pedfile, nny, nnx);
|
||||
if (pp && (int)nnx == nx && (int)nny == ny) {
|
||||
for (int i = 0; i < nx * ny; i++) {
|
||||
ped[i] = pp[i];
|
||||
}
|
||||
delete[] pp;
|
||||
mt->setPedestal(ped);
|
||||
std::cout << "Pedestal set from tiff file " << pedfile
|
||||
<< std::endl;
|
||||
} else {
|
||||
std::cout << "Could not open pedestal tiff file " << pedfile
|
||||
<< " for reading " << std::endl;
|
||||
}
|
||||
}
|
||||
std::time(&end_time);
|
||||
std::cout << std::ctime(&end_time) << std::endl;
|
||||
}
|
||||
|
||||
|
||||
ifr = 0;
|
||||
int ifile = 0;
|
||||
|
||||
mt->setFrameMode(eFrame);
|
||||
|
||||
for (int irun = runmin; irun <= runmax; irun++) {
|
||||
std::cout << "DATA ";
|
||||
// sprintf(fn,fformat,irun);
|
||||
sprintf(ffname, "%s/%s.%s", indir, fformat, fext);
|
||||
sprintf(fname, (const char*)ffname, irun);
|
||||
sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
sprintf(imgfname, (const char*)ffname, irun);
|
||||
sprintf(ffname, "%s/%s.clust", outdir, fformat);
|
||||
sprintf(cfname, (const char*)ffname, irun);
|
||||
std::cout << fname << " ";
|
||||
std::cout << imgfname << std::endl;
|
||||
std::time(&end_time);
|
||||
std::cout << std::ctime(&end_time) << std::endl;
|
||||
// cout << fname << " " << outfname << " " << imgfname << endl;
|
||||
filebin.open((const char *)(fname), ios::in | ios::binary);
|
||||
// //open file
|
||||
ifile = 0;
|
||||
if (filebin.is_open()) {
|
||||
if (thr <= 0 && cf != 0) { // cluster finder
|
||||
if (of == NULL) {
|
||||
of = fopen(cfname, "w");
|
||||
if (of) {
|
||||
mt->setFilePointer(of);
|
||||
std::cout << "file pointer set " << std::endl;
|
||||
} else {
|
||||
std::cout << "Could not open " << cfname << " for writing "
|
||||
<< std::endl;
|
||||
mt->setFilePointer(NULL);
|
||||
return 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
// //while read frame
|
||||
ff = -1;
|
||||
ifr = 0;
|
||||
while (decoder->readNextFrame(filebin, ff, np, buff)) {
|
||||
// if (np == 40) {
|
||||
// //push
|
||||
|
||||
if ((ifr+1) % 100 == 0) {
|
||||
std::cout << " ****" << decoder->getValue(buff,20,20);// << endl;
|
||||
}
|
||||
mt->pushData(buff);
|
||||
// // //pop
|
||||
mt->nextThread();
|
||||
mt->popFree(buff);
|
||||
|
||||
ifr++;
|
||||
if (ifr % 100 == 0)
|
||||
std::cout << " " << ifr << " " << ff << std::endl;
|
||||
if (nframes > 0) {
|
||||
if (ifr % nframes == 0) {
|
||||
sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat,
|
||||
ifile);
|
||||
sprintf(imgfname, (const char*)ffname, irun);
|
||||
mt->writeImage(imgfname, thr1);
|
||||
mt->clearImage();
|
||||
ifile++;
|
||||
}
|
||||
}
|
||||
// } else
|
||||
// cout << ifr << " " << ff << " " << np << endl;
|
||||
ff = -1;
|
||||
}
|
||||
std::cout << "--" << std::endl;
|
||||
filebin.close();
|
||||
while (mt->isBusy()) {
|
||||
;
|
||||
}
|
||||
if (nframes >= 0) {
|
||||
if (nframes > 0) {
|
||||
sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat, ifile);
|
||||
sprintf(imgfname, (const char*)ffname, irun);
|
||||
} else {
|
||||
sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
sprintf(imgfname, (const char*)ffname, irun);
|
||||
}
|
||||
std::cout << "Writing tiff to " << imgfname << " " << thr1 << std::endl;
|
||||
mt->writeImage(imgfname, thr1);
|
||||
mt->clearImage();
|
||||
if (of) {
|
||||
fclose(of);
|
||||
of = NULL;
|
||||
mt->setFilePointer(NULL);
|
||||
}
|
||||
}
|
||||
std::time(&end_time);
|
||||
std::cout << std::ctime(&end_time) << std::endl;
|
||||
} else
|
||||
std::cout << "Could not open " << fname << " for reading " << std::endl;
|
||||
std::cout << "DATA ";
|
||||
// sprintf(fn,fformat,irun);
|
||||
sprintf(ffname, "%s/%s.%s", indir, fformat, fext);
|
||||
sprintf(fname, (const char *)ffname, irun);
|
||||
sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
sprintf(imgfname, (const char *)ffname, irun);
|
||||
sprintf(ffname, "%s/%s.clust", outdir, fformat);
|
||||
sprintf(cfname, (const char *)ffname, irun);
|
||||
std::cout << fname << " ";
|
||||
std::cout << imgfname << std::endl;
|
||||
std::time(&end_time);
|
||||
std::cout << std::ctime(&end_time) << std::endl;
|
||||
// cout << fname << " " << outfname << " " << imgfname << endl;
|
||||
filebin.open((const char *)(fname), ios::in | ios::binary);
|
||||
// //open file
|
||||
ifile = 0;
|
||||
if (filebin.is_open()) {
|
||||
if (thr <= 0 && cf != 0) { // cluster finder
|
||||
if (of == NULL) {
|
||||
of = fopen(cfname, "w");
|
||||
if (of) {
|
||||
mt->setFilePointer(of);
|
||||
std::cout << "file pointer set " << std::endl;
|
||||
} else {
|
||||
std::cout << "Could not open " << cfname
|
||||
<< " for writing " << std::endl;
|
||||
mt->setFilePointer(NULL);
|
||||
return 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
// //while read frame
|
||||
ff = -1;
|
||||
ifr = 0;
|
||||
while (decoder->readNextFrame(filebin, ff, np, buff)) {
|
||||
// if (np == 40) {
|
||||
// //push
|
||||
|
||||
if ((ifr + 1) % 100 == 0) {
|
||||
std::cout << " ****"
|
||||
<< decoder->getValue(buff, 20, 20); // << endl;
|
||||
}
|
||||
mt->pushData(buff);
|
||||
// // //pop
|
||||
mt->nextThread();
|
||||
mt->popFree(buff);
|
||||
|
||||
ifr++;
|
||||
if (ifr % 100 == 0)
|
||||
std::cout << " " << ifr << " " << ff << std::endl;
|
||||
if (nframes > 0) {
|
||||
if (ifr % nframes == 0) {
|
||||
sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat,
|
||||
ifile);
|
||||
sprintf(imgfname, (const char *)ffname, irun);
|
||||
mt->writeImage(imgfname, thr1);
|
||||
mt->clearImage();
|
||||
ifile++;
|
||||
}
|
||||
}
|
||||
// } else
|
||||
// cout << ifr << " " << ff << " " << np << endl;
|
||||
ff = -1;
|
||||
}
|
||||
std::cout << "--" << std::endl;
|
||||
filebin.close();
|
||||
while (mt->isBusy()) {
|
||||
;
|
||||
}
|
||||
if (nframes >= 0) {
|
||||
if (nframes > 0) {
|
||||
sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat, ifile);
|
||||
sprintf(imgfname, (const char *)ffname, irun);
|
||||
} else {
|
||||
sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
sprintf(imgfname, (const char *)ffname, irun);
|
||||
}
|
||||
std::cout << "Writing tiff to " << imgfname << " " << thr1
|
||||
<< std::endl;
|
||||
mt->writeImage(imgfname, thr1);
|
||||
mt->clearImage();
|
||||
if (of) {
|
||||
fclose(of);
|
||||
of = NULL;
|
||||
mt->setFilePointer(NULL);
|
||||
}
|
||||
}
|
||||
std::time(&end_time);
|
||||
std::cout << std::ctime(&end_time) << std::endl;
|
||||
} else
|
||||
std::cout << "Could not open " << fname << " for reading "
|
||||
<< std::endl;
|
||||
}
|
||||
if (nframes < 0) {
|
||||
sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
strcpy(imgfname, ffname);
|
||||
std::cout << "Writing tiff to " << imgfname << " " << thr1 << std::endl;
|
||||
mt->writeImage(imgfname, thr1);
|
||||
sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
strcpy(imgfname, ffname);
|
||||
std::cout << "Writing tiff to " << imgfname << " " << thr1 << std::endl;
|
||||
mt->writeImage(imgfname, thr1);
|
||||
}
|
||||
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
Reference in New Issue
Block a user