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formatted slsDetectorCalibration

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This commit is contained in:
Erik Frojdh
2022-01-24 11:26:56 +01:00
parent 623b1de8a0
commit c554bbb2d3
77 changed files with 15998 additions and 15890 deletions
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243
slsDetectorCalibration/jungfrauExecutables/jungfrauClusterFinder.cpp
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@ -3,161 +3,148 @@
//#include "sls/ansi.h"
#include <iostream>
//#include "moench03T1ZmqData.h"
#include "jungfrauHighZSingleChipData.h"
#include "multiThreadedAnalogDetector.h"
#include "singlePhotonDetector.h"
#include <stdio.h>
#include <map>
#include <fstream>
#include <map>
#include <stdio.h>
#include <sys/stat.h>
#include <ctime>
using namespace std;
int main(int argc, char *argv[]) {
if (argc < 6) {
cout << "Usage is " << argv[0] << "indir outdir fname runmin runmax "
<< endl;
return 1;
}
int p = 10000;
int fifosize = 1000;
int nthreads = 1;
int nsubpix = 25;
int etabins = nsubpix * 10;
double etamin = -1, etamax = 2;
int csize = 3;
int nx = 400, ny = 400;
int save = 1;
int nsigma = 5;
int nped = 1000;
int ndark = 100;
int ok;
int iprog = 0;
if (argc<6) {
cout << "Usage is " << argv[0] << "indir outdir fname runmin runmax " << endl;
return 1;
}
int p=10000;
int fifosize=1000;
int nthreads=1;
int nsubpix=25;
int etabins=nsubpix*10;
double etamin=-1, etamax=2;
int csize=3;
int nx=400, ny=400;
int save=1;
int nsigma=5;
int nped=1000;
int ndark=100;
int ok;
int iprog=0;
jungfrauHighZSingleChipData *decoder = new jungfrauHighZSingleChipData();
decoder->getDetectorSize(nx, ny);
cout << "nx " << nx << " ny " << ny << endl;
// moench03T1ZmqData *decoder=new moench03T1ZmqData();
singlePhotonDetector *filter =
new singlePhotonDetector(decoder, csize, nsigma, 1, 0, nped, 200);
// char tit[10000];
cout << "filter " << endl;
int *image;
filter->newDataSet();
jungfrauHighZSingleChipData *decoder=new jungfrauHighZSingleChipData();
int ff, np;
int dsize = decoder->getDataSize();
cout << " data size is " << dsize;
decoder->getDetectorSize(nx,ny);
cout << "nx " << nx << " ny " << ny << endl;
char data[dsize];
//moench03T1ZmqData *decoder=new moench03T1ZmqData();
singlePhotonDetector *filter=new singlePhotonDetector(decoder,csize, nsigma, 1, 0, nped, 200);
// char tit[10000];
cout << "filter " << endl;
ifstream filebin;
char *indir = argv[1];
char *outdir = argv[2];
char *fformat = argv[3];
int runmin = atoi(argv[4]);
int runmax = atoi(argv[5]);
char fname[10000];
char outfname[10000];
char imgfname[10000];
char pedfname[10000];
char fn[10000];
std::time_t end_time;
FILE *of = NULL;
cout << "input directory is " << indir << endl;
cout << "output directory is " << outdir << endl;
cout << "fileformat is " << fformat << endl;
int* image;
filter->newDataSet();
int ff, np;
int dsize=decoder->getDataSize();
cout << " data size is " << dsize;
char data[dsize];
ifstream filebin;
char *indir=argv[1];
char *outdir=argv[2];
char *fformat=argv[3];
int runmin=atoi(argv[4]);
int runmax=atoi(argv[5]);
char fname[10000];
char outfname[10000];
char imgfname[10000];
char pedfname[10000];
char fn[10000];
std::time_t end_time;
FILE *of=NULL;
cout << "input directory is " << indir << endl;
cout << "output directory is " << outdir << endl;
cout << "fileformat is " << fformat << endl;
std::time(&end_time);
cout << std::ctime(&end_time) << endl;
char* buff;
multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
mt->setDetectorMode(ePhotonCounting);
mt->setFrameMode(eFrame);
mt->StartThreads();
mt->popFree(buff);
cout << "mt " << endl;
int ifr=0;
for (int irun=runmin; irun<runmax; irun++) {
sprintf(fn,fformat,irun);
sprintf(fname,"%s/%s.raw",indir,fn);
sprintf(outfname,"%s/%s.clust",outdir,fn);
sprintf(imgfname,"%s/%s.tiff",outdir,fn);
std::time(&end_time);
cout << std::ctime(&end_time) << endl;
cout << fname << " " << outfname << " " << imgfname << endl;
filebin.open((const char *)(fname), ios::in | ios::binary);
// //open file
if (filebin.is_open()){
of=fopen(outfname,"w");
if (of) {
mt->setFilePointer(of);
// cout << "file pointer set " << endl;
} else {
cout << "Could not open "<< outfname << " for writing " << endl;
mt->setFilePointer(NULL);
return 1;
}
// //while read frame
ff=-1;
while (decoder->readNextFrame(filebin, ff, np,buff)) {
cout << std::ctime(&end_time) << endl;
mt->pushData(buff);
mt->nextThread();
mt->popFree(buff);
ifr++;
if (ifr%10000==0) cout << ifr << " " << ff << endl;
ff=-1;
}
cout << "--" << endl;
filebin.close();
while (mt->isBusy()) {;}//wait until all data are processed from the queues
if (of)
fclose(of);
mt->writeImage(imgfname);
mt->clearImage();
std::time(&end_time);
cout << std::ctime(&end_time) << endl;
char *buff;
multiThreadedAnalogDetector *mt =
new multiThreadedAnalogDetector(filter, nthreads, fifosize);
} else
cout << "Could not open "<< fname << " for reading " << endl;
}
mt->setDetectorMode(ePhotonCounting);
mt->setFrameMode(eFrame);
mt->StartThreads();
mt->popFree(buff);
return 0;
cout << "mt " << endl;
int ifr = 0;
for (int irun = runmin; irun < runmax; irun++) {
sprintf(fn, fformat, irun);
sprintf(fname, "%s/%s.raw", indir, fn);
sprintf(outfname, "%s/%s.clust", outdir, fn);
sprintf(imgfname, "%s/%s.tiff", outdir, fn);
std::time(&end_time);
cout << std::ctime(&end_time) << endl;
cout << fname << " " << outfname << " " << imgfname << endl;
filebin.open((const char *)(fname), ios::in | ios::binary);
// //open file
if (filebin.is_open()) {
of = fopen(outfname, "w");
if (of) {
mt->setFilePointer(of);
// cout << "file pointer set " << endl;
} else {
cout << "Could not open " << outfname << " for writing "
<< endl;
mt->setFilePointer(NULL);
return 1;
}
// //while read frame
ff = -1;
while (decoder->readNextFrame(filebin, ff, np, buff)) {
mt->pushData(buff);
mt->nextThread();
mt->popFree(buff);
ifr++;
if (ifr % 10000 == 0)
cout << ifr << " " << ff << endl;
ff = -1;
}
cout << "--" << endl;
filebin.close();
while (mt->isBusy()) {
;
} // wait until all data are processed from the queues
if (of)
fclose(of);
mt->writeImage(imgfname);
mt->clearImage();
std::time(&end_time);
cout << std::ctime(&end_time) << endl;
} else
cout << "Could not open " << fname << " for reading " << endl;
}
return 0;
}