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formatted slsDetectorCalibration

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Erik Frojdh
2022-01-24 11:26:56 +01:00
parent 623b1de8a0
commit c554bbb2d3
77 changed files with 15998 additions and 15890 deletions
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436
slsDetectorCalibration/interpolatingDetector.h
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@ -1,8 +1,7 @@
// SPDX-License-Identifier: LGPL-3.0-or-other
// Copyright (C) 2021 Contributors to the SLS Detector Package
#ifndef INTERPOLATINGDETECTOR_H
#define INTERPOLATINGDETECTOR_H
#define INTERPOLATINGDETECTOR_H
#include "singlePhotonDetector.h"
@ -15,264 +14,255 @@
#endif
#include <iostream>
using namespace std;
class interpolatingDetector : public singlePhotonDetector {
/** @short class to perform pedestal subtraction etc. and find single photon clusters for an analog detector */
/** @short class to perform pedestal subtraction etc. and find single photon
* clusters for an analog detector */
public:
public:
/**
Constructor (no error checking if datasize and offsets are compatible!)
\param d detector data structure to be used
\param csize cluster size (should be an odd number). Defaults to 3
\param nsigma number of rms to discriminate from the noise. Defaults to 5
\param sign 1 if photons are positive, -1 if negative
\param cm common mode subtraction algorithm, if any. Defaults to NULL
i.e. none \param nped number of samples for pedestal averaging \param nd
number of dark frames to average as pedestals without photon
discrimination at the beginning of the measurement
/**
*/
Constructor (no error checking if datasize and offsets are compatible!)
\param d detector data structure to be used
\param csize cluster size (should be an odd number). Defaults to 3
\param nsigma number of rms to discriminate from the noise. Defaults to 5
\param sign 1 if photons are positive, -1 if negative
\param cm common mode subtraction algorithm, if any. Defaults to NULL i.e. none
\param nped number of samples for pedestal averaging
\param nd number of dark frames to average as pedestals without photon discrimination at the beginning of the measurement
interpolatingDetector(slsDetectorData<uint16_t> *d, slsInterpolation *inte,
double nsigma = 5, int sign = 1,
commonModeSubtraction *cm = NULL, int nped = 1000,
int nd = 100, int nnx = -1, int nny = -1,
double *gm = NULL,
ghostSummation<uint16_t> *gs = NULL)
: singlePhotonDetector(d, 3, nsigma, sign, cm, nped, nd, nnx, nny, gm,
gs),
interp(inte), id(0) {
// cout << "**"<< xmin << " " << xmax << " " << ymin << " " << ymax <<
// endl;
fi = new pthread_mutex_t;
};
interpolatingDetector(interpolatingDetector *orig)
: singlePhotonDetector(orig) {
// if (orig->interp)
// interp=(orig->interp)->Clone();
// else
*/
interpolatingDetector(slsDetectorData<uint16_t> *d, slsInterpolation *inte,
double nsigma=5,
int sign=1,
commonModeSubtraction *cm=NULL,
int nped=1000,
int nd=100, int nnx=-1, int nny=-1, double *gm=NULL, ghostSummation<uint16_t> *gs=NULL) :
singlePhotonDetector(d, 3,nsigma,sign, cm, nped, nd, nnx, nny, gm, gs) , interp(inte), id(0) {
//cout << "**"<< xmin << " " << xmax << " " << ymin << " " << ymax << endl;
fi=new pthread_mutex_t ;
interp = orig->interp;
};
interpolatingDetector(interpolatingDetector *orig) : singlePhotonDetector(orig) {
// if (orig->interp)
// interp=(orig->interp)->Clone();
// else
interp=orig->interp;
id=orig->id;
fi=orig->fi;
}
virtual interpolatingDetector *Clone() {
return new interpolatingDetector(this);
}
virtual int setId(int i) {
id=i;
// interp->setId(id);
return id;
};
virtual void prepareInterpolation(int &ok) {
/* cout << "*"<< endl; */
/* #ifdef SAVE_ALL */
/* char tit[1000]; */
/* sprintf(tit,"/scratch/ped_%d.tiff",id); */
/* writePedestals(tit); */
/* sprintf(tit,"/scratch/ped_rms_%d.tiff",id); */
/* writePedestalRMS(tit); */
/* if (gmap) { */
/* sprintf(tit,"/scratch/gmap_%d.tiff",id); */
/* writeGainMap(tit); */
/* } */
/* #endif */
if (interp){
pthread_mutex_lock(fi);
interp->prepareInterpolation(ok);
pthread_mutex_unlock(fi);
id = orig->id;
fi = orig->fi;
}
}
virtual interpolatingDetector *Clone() {
return new interpolatingDetector(this);
}
void clearImage() {
if (interp) {
pthread_mutex_lock(fi);
interp->clearInterpolatedImage();
pthread_mutex_unlock(fi);
} else
singlePhotonDetector::clearImage();
};
virtual int setId(int i) {
id = i;
// interp->setId(id);
return id;
};
int getImageSize(int &nnx, int &nny, int &nsx, int &nsy) {
if (interp)
return interp->getImageSize(nnx, nny, nsx, nsy);
else
return analogDetector<uint16_t>::getImageSize(nnx, nny, nsx, nsy);
};
virtual void prepareInterpolation(int &ok) {
/* cout << "*"<< endl; */
/* #ifdef SAVE_ALL */
/* char tit[1000]; */
/* sprintf(tit,"/scratch/ped_%d.tiff",id); */
/* writePedestals(tit); */
/* sprintf(tit,"/scratch/ped_rms_%d.tiff",id); */
/* writePedestalRMS(tit); */
/* if (gmap) { */
/* sprintf(tit,"/scratch/gmap_%d.tiff",id); */
/* writeGainMap(tit); */
/* } */
/* #endif */
if (interp) {
pthread_mutex_lock(fi);
interp->prepareInterpolation(ok);
pthread_mutex_unlock(fi);
}
}
void clearImage() {
if (interp) {
pthread_mutex_lock(fi);
interp->clearInterpolatedImage();
pthread_mutex_unlock(fi);
} else
singlePhotonDetector::clearImage();
};
#ifdef MYROOT1
virtual TH2F *getImage()
#endif
#ifndef MYROOT1
virtual int *getImage()
#endif
{
// cout << "image " << endl;
if (interp)
return interp->getInterpolatedImage();
else
return analogDetector<uint16_t>::getImage();
}
int getImageSize(int &nnx, int &nny, int &nsx, int &nsy) {
if (interp)
return interp->getImageSize(nnx, nny, nsx, nsy);
else
return analogDetector<uint16_t>::getImageSize(nnx, nny, nsx, nsy);
};
#ifdef MYROOT1
virtual TH2F *addToInterpolatedImage(char *data, int *val, int &nph)
virtual TH2F *getImage()
#endif
#ifndef MYROOT1
virtual int *addToInterpolatedImage(char *data, int *val, int &nph)
virtual int *getImage()
#endif
{
nph=addFrame(data,val,0);
if (interp)
return interp->getInterpolatedImage();
//else
return singlePhotonDetector::getImage();
//return NULL;
};
{
// cout << "image " << endl;
if (interp)
return interp->getInterpolatedImage();
else
return analogDetector<uint16_t>::getImage();
}
#ifdef MYROOT1
virtual TH2F *addToFlatField(char *data, int *val, int &nph)
virtual TH2F *addToInterpolatedImage(char *data, int *val, int &nph)
#endif
#ifndef MYROOT1
virtual int *addToFlatField(char *data, int *val, int &nph)
virtual int *addToInterpolatedImage(char *data, int *val, int &nph)
#endif
{
nph=addFrame(data,val,1);
if (interp)
return interp->getFlatField();
else
return NULL;
};
void *writeImage(const char * imgname) {
// cout << id << "=" << imgname<< endl;
if (interp)
interp->writeInterpolatedImage(imgname);
else
analogDetector<uint16_t>::writeImage(imgname);
return NULL;
}
int addFrame(char *data, int *ph=NULL, int ff=0) {
singlePhotonDetector::processData(data,ph);
int nph=0;
double int_x, int_y;
double eta_x, eta_y;
if (interp) {
// cout << "int" << endl;
pthread_mutex_lock(fi);
for (nph=0; nph<nphFrame; nph++) {
if (ff) {
interp->addToFlatField((clusters+nph)->quadTot,(clusters+nph)->quad,(clusters+nph)->get_cluster(),eta_x, eta_y);
} else {
interp->getInterpolatedPosition((clusters+nph)->x, (clusters+nph)->y, (clusters+nph)->quadTot,(clusters+nph)->quad,(clusters+nph)->get_cluster(),int_x, int_y);
interp->addToImage(int_x, int_y);
}
}
pthread_mutex_unlock(fi);
}
return nphFrame;
};
virtual void processData(char *data, int *val=NULL) {
switch (dMode) {
case eAnalog:
// cout << "an" << endl;
analogDetector<uint16_t>::processData(data,val);
break;
case ePhotonCounting:
// cout << "spc" << endl;
singlePhotonDetector::processData(data,val);
break;
default:
//cout << "int" << endl;
switch(fMode) {
case ePedestal:
addToPedestal(data);
break;
case eFlat:
if (interp)
addFrame(data,val,1);
else
singlePhotonDetector::processData(data,val);
break;
default:
if (interp)
addFrame(data,val,0);
else
singlePhotonDetector::processData(data,val);
}
}
{
nph = addFrame(data, val, 0);
if (interp)
return interp->getInterpolatedImage();
// else
return singlePhotonDetector::getImage();
// return NULL;
};
virtual slsInterpolation *getInterpolation(){
return interp;
#ifdef MYROOT1
virtual TH2F *addToFlatField(char *data, int *val, int &nph)
#endif
#ifndef MYROOT1
virtual int *addToFlatField(char *data, int *val, int &nph)
#endif
{
nph = addFrame(data, val, 1);
if (interp)
return interp->getFlatField();
else
return NULL;
};
virtual slsInterpolation *setInterpolation(slsInterpolation *ii){
// int ok;
interp=ii;
/* pthread_mutex_lock(fi);
if (interp)
interp->prepareInterpolation(ok);
pthread_mutex_unlock(fi); */
// cout << "det" << endl;
return interp;
};
virtual void resetFlatField() { if (interp) {
pthread_mutex_lock(fi);
interp->resetFlatField();
pthread_mutex_unlock(fi);
}
void *writeImage(const char *imgname) {
// cout << id << "=" << imgname<< endl;
if (interp)
interp->writeInterpolatedImage(imgname);
else
analogDetector<uint16_t>::writeImage(imgname);
return NULL;
}
virtual int getNSubPixels(){ if (interp) return interp->getNSubPixels(); else return 1;}
int addFrame(char *data, int *ph = NULL, int ff = 0) {
virtual int setNSubPixels(int ns) {
if (interp) {
pthread_mutex_lock(fi);
interp->getNSubPixels();
pthread_mutex_unlock(fi);
}
return getNSubPixels();
singlePhotonDetector::processData(data, ph);
int nph = 0;
double int_x, int_y;
double eta_x, eta_y;
if (interp) {
// cout << "int" << endl;
pthread_mutex_lock(fi);
for (nph = 0; nph < nphFrame; nph++) {
if (ff) {
interp->addToFlatField(
(clusters + nph)->quadTot, (clusters + nph)->quad,
(clusters + nph)->get_cluster(), eta_x, eta_y);
} else {
interp->getInterpolatedPosition(
(clusters + nph)->x, (clusters + nph)->y,
(clusters + nph)->quadTot, (clusters + nph)->quad,
(clusters + nph)->get_cluster(), int_x, int_y);
interp->addToImage(int_x, int_y);
}
}
pthread_mutex_unlock(fi);
}
return nphFrame;
};
virtual void processData(char *data, int *val = NULL) {
switch (dMode) {
case eAnalog:
// cout << "an" << endl;
analogDetector<uint16_t>::processData(data, val);
break;
case ePhotonCounting:
// cout << "spc" << endl;
singlePhotonDetector::processData(data, val);
break;
default:
// cout << "int" << endl;
switch (fMode) {
case ePedestal:
addToPedestal(data);
break;
case eFlat:
if (interp)
addFrame(data, val, 1);
else
singlePhotonDetector::processData(data, val);
break;
default:
if (interp)
addFrame(data, val, 0);
else
singlePhotonDetector::processData(data, val);
}
}
};
virtual slsInterpolation *getInterpolation() { return interp; };
virtual slsInterpolation *setInterpolation(slsInterpolation *ii) {
// int ok;
interp = ii;
/* pthread_mutex_lock(fi);
if (interp)
interp->prepareInterpolation(ok);
pthread_mutex_unlock(fi); */
// cout << "det" << endl;
return interp;
};
virtual void resetFlatField() {
if (interp) {
pthread_mutex_lock(fi);
interp->resetFlatField();
pthread_mutex_unlock(fi);
}
}
protected:
slsInterpolation *interp;
int id;
pthread_mutex_t *fi;
virtual int getNSubPixels() {
if (interp)
return interp->getNSubPixels();
else
return 1;
}
virtual int setNSubPixels(int ns) {
if (interp) {
pthread_mutex_lock(fi);
interp->getNSubPixels();
pthread_mutex_unlock(fi);
}
return getNSubPixels();
}
protected:
slsInterpolation *interp;
int id;
pthread_mutex_t *fi;
};
#endif