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impplemented the possibility of setting the bad channels on a module basis

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git-svn-id: file:///afs/psi.ch/project/sls_det_software/svn/slsDetectorSoftware@183 951219d9-93cf-4727-9268-0efd64621fa3
This commit is contained in:
bergamaschi 2012-05-25 15:23:32 +00:00
parent d30ad5faac
commit c14b98d938
7 changed files with 166 additions and 57 deletions
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10
slsDetectorSoftware/multiSlsDetector/multiSlsDetector.cpp
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@ -1969,13 +1969,19 @@ int multiSlsDetector::setBadChannelCorrection(string fname){
int badlist[MAX_BADCHANS];// badlistdet[MAX_BADCHANS];
int nbad=0;//, nbaddet=0, choff=0, idet=0;
int ret=0;
if (fname=="default")
fname=string(thisMultiDetector->badChanFile);
int ret=setBadChannelCorrection(fname, nbad, badlist);
ret=setBadChannelCorrection(fname, nbad, badlist);
#ifdef VERBOSE
cout << "file contained " << ret << " badcahns" << endl;
cout << "file contained " << ret << " badchans" << endl;
#endif
if (ret==0) {
thisMultiDetector->correctionMask&=~(1<<DISCARD_BAD_CHANNELS);

42
slsDetectorSoftware/slsDetector/slsDetector.cpp
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@ -4239,23 +4239,44 @@ int slsDetector::rateCorrect(float* datain, float *errin, float* dataout, float
return 0;
};
int slsDetector::setBadChannelCorrection(string fname){
int nbadmod,ret=0;
int badchanlist[MAX_BADCHANS];
int off;
string fn=fname;
if (fname=="default")
fname=string(thisDetector->badChanFile);
int ret=setBadChannelCorrection(fname, thisDetector->nBadChans, thisDetector->badChansList);
fname=string(badChanFile);
if (nBadChans && badChansList)
ret=setBadChannelCorrection(fname, *nBadChans, badChansList);
if (ret) {
thisDetector->correctionMask|=(1<<DISCARD_BAD_CHANNELS);
strcpy(thisDetector->badChanFile,fname.c_str());
*correctionMask|=(1<<DISCARD_BAD_CHANNELS);
strcpy(badChanFile,fname.c_str());
} else
thisDetector->correctionMask&=~(1<<DISCARD_BAD_CHANNELS);
*correctionMask&=~(1<<DISCARD_BAD_CHANNELS);
fillBadChannelMask();
return thisDetector->correctionMask&(1<<DISCARD_BAD_CHANNELS);
return (*correctionMask)&(1<<DISCARD_BAD_CHANNELS);
}
int slsDetector::setBadChannelCorrection(int nch, int *chs, int ff) {
#ifdef VERBOSE
cout << "setting " << nch << " bad chans " << endl;
@ -4263,9 +4284,12 @@ int slsDetector::setBadChannelCorrection(int nch, int *chs, int ff) {
if (ff==0) {
if (nch<MAX_BADCHANS && nch>0) {
thisDetector->correctionMask|=(1<<DISCARD_BAD_CHANNELS);
thisDetector->nBadChans=nch;
thisDetector->nBadChans=0;
for (int ich=0 ;ich<nch; ich++) {
if (chs[ich]<getMaxNumberOfChannels()) {
thisDetector->badChansList[ich]=chs[ich];
thisDetector->nBadChans++;
}
}
} else
thisDetector->correctionMask&=~(1<<DISCARD_BAD_CHANNELS);
@ -5316,7 +5340,7 @@ int slsDetector::writeSettingsFile(string fname, int imod){
int slsDetector::loadSettingsFile(string fname, int imod) {
sls_detector_module *myMod=NULL;
string fn;
string fn=fname;
fn=fname;
int mmin=0, mmax=setNumberOfModules();
if (imod>=0) {
@ -5324,7 +5348,7 @@ int slsDetector::loadSettingsFile(string fname, int imod) {
mmax=imod+1;
}
for (int im=mmin; im<mmax; im++) {
if (fname.find(".sn")==string::npos) {
if (fname.find(".sn")==string::npos && fname.find(".trim")) {
ostringstream ostfn;
ostfn << fname << ".sn" << setfill('0') << setw(3) << hex << getId(MODULE_SERIAL_NUMBER, im);
fn=ostfn.str();

75
slsDetectorSoftware/slsDetector/slsDetectorUtils.cpp
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@ -313,6 +313,81 @@ int slsDetectorUtils::setTotalProgress() {
int slsDetectorUtils::setBadChannelCorrection(string fname, int &nbadtot, int *badchanlist, int off){
int nbad;
int badlist[MAX_BADCHANS];
ifstream infile;
string str;
int interrupt=0;
int ich;
int chmin,chmax;
#ifdef VERBOSE
std::cout << "Setting bad channel correction to " << fname << std::endl;
#endif
int modmi=0, modma=1;
int singlefile=0;
string fn;
int offset=off;
nbadtot=0;
if (fname=="" || fname=="none") {
;
} else {
if (fname.find(".sn")==string::npos && fname.find(".chans")==string::npos) {
modma=setNumberOfModules();
singlefile=1;
}
for (int im=0; im<modma; im++) {
if (singlefile) {
ostringstream ostfn;
ostfn << fname << ".sn" << setfill('0') << setw(3) << hex << getId(MODULE_SERIAL_NUMBER, im);
fn=ostfn.str();
} else
fn=fname;
infile.open(fn.c_str(), ios_base::in);
if (infile.is_open()==0) {
std::cout << "could not open file " << fname <<std::endl;
return -1;
}
nbad=setBadChannelCorrection(infile, nbad, badlist, offset);
infile.close();
for (int ich=0; ich<nbad; ich++) {
if (nbadtot<MAX_BADCHANS) {
badchanlist[nbadtot]=badlist[ich];
nbadtot++;
}
}
offset+=getChansPerMod(im);
}
}
if (nbadtot>0 && nbadtot<MAX_BADCHANS) {
return nbadtot;
} else
return 0;
}
float slsDetectorUtils::getCurrentProgress() {

2
slsDetectorSoftware/slsDetector/slsDetectorUtils.h
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@ -69,6 +69,7 @@ class slsDetectorUtils : public slsDetectorActions, public postProcessing {
// int getPositions(float *pos=NULL){return angularConversion::getPositions(pos);};
using slsDetectorBase::setFlatFieldCorrection;
using postProcessing::setBadChannelCorrection;
// string getFilePath(){return fileIO::getFilePath();};
// string setFilePath(string s){return fileIO::setFilePath(s);};
@ -269,6 +270,7 @@ class slsDetectorUtils : public slsDetectorActions, public postProcessing {
int setBadChannelCorrection(string fname, int &nbadtot, int *badchanlist, int off=0);

42
slsDetectorSoftware/slsDetectorAnalysis/postProcessing.cpp
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@ -55,25 +55,18 @@ int postProcessing::flatFieldCorrect(float datain, float errin, float &dataout,
};
int postProcessing::setBadChannelCorrection(string fname, int &nbad, int *badlist){
ifstream infile;
string str;
int postProcessing::setBadChannelCorrection(ifstream &infile, int &nbad, int *badlist, int moff){
int interrupt=0;
int ich;
int chmin,chmax;
#ifdef VERBOSE
std::cout << "Setting bad channel correction to " << fname << std::endl;
#endif
string str;
if (fname=="" || fname=="none") {
nbad=0;
return 0;
} else {
infile.open(fname.c_str(), ios_base::in);
if (infile.is_open()==0) {
std::cout << "could not open file " << fname <<std::endl;
return -1;
}
nbad=0;
while (infile.good() and interrupt==0) {
getline(infile,str);
@ -118,15 +111,25 @@ int postProcessing::setBadChannelCorrection(string fname, int &nbad, int *badlis
interrupt=1;
}
}
for (int ich=0; ich<nbad; ich++) {
badlist[ich]=badlist[ich]+moff;
}
infile.close();
if (nbad>0 && nbad<MAX_BADCHANS) {
return nbad;
} else
return 0;
}
void postProcessing::processFrame(int *myData, int delflag) {
string fname;
@ -424,6 +427,7 @@ int postProcessing::fillBadChannelMask() {
cout << "number of bad channels is " << nbad << endl;
#endif
return nbad;
}

6
slsDetectorSoftware/slsDetectorAnalysis/postProcessing.h
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@ -75,9 +75,7 @@ class postProcessing : public angularConversion, public fileIO
*/
virtual int setBadChannelCorrection(string fname="")=0;
static int setBadChannelCorrection(ifstream &infile, int &nbad, int *badlist, int moff=0);
/**
set bad channels correction
\param fname file with bad channel list ("" disable)
@ -85,7 +83,7 @@ class postProcessing : public angularConversion, public fileIO
\param badlist array of badchannels
\returns 0 if bad channel disabled, >0 otherwise
*/
static int setBadChannelCorrection(string fname, int &nbad, int *badlist);
virtual int setBadChannelCorrection(string fname, int &nbad, int *badlist, int off=0)=0;
/**