mirror of
https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2025-06-12 12:57:13 +02:00
Moench v8 (#892)
* new rct structure for moench03 * new moench data structure for offline processing * meonch raw data and zmq process files updated to 7.0.3 version * implemented config file for Zmq file * raw data and zmq work with config file, but only with one file/interface * zmq config change * added config examples for zmq and rawdata
This commit is contained in:
anberga
@ -13,7 +13,7 @@
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#ifndef MOENCH04
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#ifndef RECT
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#include "moench03T1ReceiverDataNew.h"
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#include "moench03v2Data.h"
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#endif
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#endif
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@ -41,34 +41,147 @@ using namespace std;
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int main(int argc, char *argv[]) {
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if (argc < 4) {
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std::map<std::string, std::string> args = {
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{"numfiles","1"},
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{"nthreads","5"},
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{"fifosize","5000"},
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{"nsigma","5"},
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{"gainfile","none"},
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{"detectorMode","counting"},
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{"threshold","0"},
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{"pedestalfile","none"},
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{"nframes","0"},
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{"xMin","0"},
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{"xMax","400"},
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{"yMin","0"},
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{"yMax","400"},
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{"eMin","0"},
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{"eMax","16000"},
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{"outdir","./"},
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{"indir","./"},
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{"flist","none"},
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{"fformat","none"},
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{"runmin","0"},
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{"runmax","-1"},
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{"readnrows","400"}
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};
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//float *gm;
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int ff, np;
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// cout << " data size is " << dsize;
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ifstream filebin;
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if (argc < 4) {
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std::string name, value,sline;
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int ic=0;
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ifstream flist;
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flist.open (argv[1], std::ifstream::in);
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if (flist.is_open()) {
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cout << "Using config file " <<argv[1] << endl;
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while (std::getline(flist,sline)){
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if (sline.at(0)!='#') {
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ic=sline.find(' ');
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name = sline.substr(0,ic);
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value = sline.substr(ic+1,sline.size()-ic);
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args[name]=value;
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}
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}
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flist.close();
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} else {
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cout << "Usage is " << argv[0]
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<< "indir outdir fname(no extension) [runmin] [runmax] [pedfile (raw or tiff)] [threshold] "
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"[nframes] [xmin xmax ymin ymax] [gainmap]"
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"[nframes] [xmin xmax ymin ymax] [gainmap]"
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<< endl;
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cout << "threshold <0 means analog; threshold=0 means cluster finder; "
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"threshold>0 means photon counting"
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"threshold>0 means photon counting"
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<< endl;
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cout << "nframes <0 means sum everything; nframes=0 means one file per "
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"run; nframes>0 means one file every nframes"
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"run; nframes>0 means one file every nframes"
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<< endl;
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return 1;
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return EXIT_FAILURE;
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}
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} else {
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args["indir"]=argv[1];
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args["outdir"]=argv[1];
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args["fformat"]=argv[3];
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if (argc >= 5) {
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args["runmin"] = argv[4];
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}
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args["runmax"] = args["runmin"];
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if (argc >= 6) {
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args["runmax"] = argv[5];
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}
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if (argc >= 7) {
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args["pedestalfile"] = argv[6];
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}
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if (argc >= 8) {
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args["threshold"] = argv[7];
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}
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if (argc >= 9) {
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args["nframes"] = argv[8];
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}
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if (argc >= 13) {
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args["xMin"] = argv[9];
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args["xMax"] = argv[10];
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args["yMin"] = argv[11];
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args["yMax"] = argv[12];
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}
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if (argc > 13) {
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args["gainfile"] = argv[13];
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}
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if (atof(args["threshold"].c_str())<0) {
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args["detectorMode"]="analog";
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}
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}
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int fifosize = 1000;
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int nthreads = 10;
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int csize = 3;
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int nsigma = 5;
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int nped = 10000;
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for (auto const& x : args)
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{
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std::cout << x.first // string (key)
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<< ':'
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<< x.second // string's value
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<< std::endl;
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}
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string indir=args["indir"];
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string outdir = args["outdir"];
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string fformat= args["fformat"];
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int runmin = atoi(args["runmin"].c_str());
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int runmax = atoi(args["runmin"].c_str());
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string pedfile =args["pedestalfile"];
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double thr = atof(args["threshold"].c_str());
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double thr1 = 1;
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int nframes = atoi(args["nframes"].c_str());
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int xmin = atoi(args["xMin"].c_str()), xmax = atoi(args["xMax"].c_str()), ymin = atoi(args["yMin"].c_str()), ymax = atoi(args["yMax"].c_str());
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string gainfname=args["gainfile"];
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int fifosize = atoi(args["fifosize"].c_str());
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int nthreads = atoi(args["nthreads"].c_str());
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int nsigma = atoi(args["nsigma"].c_str());
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int nrows = atoi(args["readnrows"].c_str());
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float eMin = atof(args["eMin"].c_str());
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float eMax = atof(args["eMax"].c_str());
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int csize = 3;
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int nped = 1000;
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int cf = 0;
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int numberOfPackets=40;
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int numberOfPackets=nrows/8;
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#ifdef RECT
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cout << "Should be rectangular but now it will crash! No data structure defined!" << endl;
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#endif
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#ifndef MOENCH04
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moench03T1ReceiverDataNew *decoder = new moench03T1ReceiverDataNew();
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moench03v2Data *decoder = new moench03v2Data(100);
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cout << "MOENCH03!" << endl;
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#endif
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@ -77,7 +190,7 @@ int main(int argc, char *argv[]) {
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moench04CtbZmq10GbData *decoder = new moench04CtbZmq10GbData(5000,0);
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cout << "MOENCH04!" << endl;
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#endif
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#ifdef MOENCH04_DGS
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moench04CtbZmq10GbData *decoder = new moench04CtbZmq10GbData(5000,5000);
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cout << "MOENCH04 DGS!" << endl;
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@ -86,63 +199,11 @@ int main(int argc, char *argv[]) {
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#endif
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//Read detector size from decoder
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int nx , ny;
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decoder->getDetectorSize(nx, ny);
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//float *gm;
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int ff, np;
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// cout << " data size is " << dsize;
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ifstream filebin;
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char *indir = argv[1];
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char *outdir = argv[2];
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char *fformat = argv[3];
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int runmin = 0;
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// cout << "argc is " << argc << endl;
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if (argc >= 5) {
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runmin = atoi(argv[4]);
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}
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int runmax = runmin;
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if (argc >= 6) {
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runmax = atoi(argv[5]);
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}
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char *pedfile = NULL;
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if (argc >= 7) {
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pedfile = argv[6];
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}
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double thr = 0;
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double thr1 = 1;
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if (argc >= 8) {
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thr = atof(argv[7]);
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}
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int nframes = 0;
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if (argc >= 9) {
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nframes = atoi(argv[8]);
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}
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int xmin = 0, xmax = nx, ymin = 0, ymax = ny;
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if (argc >= 13) {
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xmin = atoi(argv[9]);
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xmax = atoi(argv[10]);
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ymin = atoi(argv[11]);
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ymax = atoi(argv[12]);
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}
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char *gainfname = NULL;
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if (argc > 13) {
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gainfname = argv[13];
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cout << "Gain map file name is: " << gainfname << endl;
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}
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//Read detector size from decoder
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char ffname[10000];
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char fname[10000];
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char imgfname[10000];
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@ -151,17 +212,6 @@ int main(int argc, char *argv[]) {
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std::time_t end_time;
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FILE *of = NULL;
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cout << "input directory is " << indir << endl;
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cout << "output directory is " << outdir << endl;
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cout << "input file is " << fformat << endl;
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cout << "runmin is " << runmin << endl;
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cout << "runmax is " << runmax << endl;
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if (pedfile)
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cout << "pedestal file is " << pedfile << endl;
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if (thr > 0)
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cout << "threshold is " << thr << endl;
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cout << "Nframes is " << nframes << endl;
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uint32_t nnx, nny;
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@ -182,50 +232,62 @@ int main(int argc, char *argv[]) {
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singlePhotonDetector *filter = new singlePhotonDetector(
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decoder, csize, nsigma, 1, cm, nped, 200, -1, -1, gainmap, gs);
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if (gainfname) {
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//if (gainfname) {
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if (filter->readGainMap(gainfname))
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if (filter->readGainMap(gainfname.c_str()))
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cout << "using gain map " << gainfname << endl;
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else
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cout << "Could not open gain map " << gainfname << endl;
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} else
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thr = 0.15 * thr;
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// } else
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thr = 0.15 * thr;
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filter->newDataSet();
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//int dsize = decoder->getDataSize();
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if (thr > 0) {
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cout << "threshold is " << thr << endl;
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filter->setThreshold(thr);
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cf = 0;
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cout << "threshold is " << thr << endl;
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filter->setThreshold(thr);
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cf = 0;
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} else
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cf = 1;
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cf = 1;
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filter->setROI(xmin, xmax, ymin, ymax);
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filter->setEnergyRange(eMin, eMax);
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std::time(&end_time);
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cout << std::ctime(&end_time) << endl;
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char *buff;
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// multiThreadedAnalogDetector *mt=new
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// multiThreadedAnalogDetector(filter,nthreads,fifosize);
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multiThreadedCountingDetector *mt =
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new multiThreadedCountingDetector(filter, nthreads, fifosize);
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#ifndef ANALOG
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mt->setDetectorMode(ePhotonCounting);
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cout << "Counting!" << endl;
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if (thr > 0) {
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if (args["detectorMode"]=="counting") {
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mt->setDetectorMode(ePhotonCounting);
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if (thr > 0) {
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cf = 0;
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}
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} else {
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mt->setDetectorMode(eAnalog);
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cf = 0;
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}
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#endif
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//{
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#ifdef ANALOG
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mt->setDetectorMode(eAnalog);
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cout << "Analog!" << endl;
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cf = 0;
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// thr1=thr;
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#endif
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// }
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// #ifndef ANALOG
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// mt->setDetectorMode(ePhotonCounting);
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// cout << "Counting!" << endl;
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// if (thr > 0) {
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// cf = 0;
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// }
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// #endif
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// //{
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// #ifdef ANALOG
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// mt->setDetectorMode(eAnalog);
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// cout << "Analog!" << endl;
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// cf = 0;
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// // thr1=thr;
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// #endif
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// // }
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mt->StartThreads();
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mt->popFree(buff);
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@ -236,84 +298,117 @@ int main(int argc, char *argv[]) {
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char froot[1000];
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double *ped=new double[nx * ny];//, *ped1;
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int pos,pos1;
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//return 0;
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if (pedfile.find(".raw") != std::string::npos) {
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pos1=pedfile.rfind("/");
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strcpy(froot,pedfile.substr(pos1).c_str());
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pos=string(froot).find(".raw");
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froot[pos]='\0';
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}
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if (pedfile) {
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if (string(pedfile).find(".raw") != std::string::npos) {
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pos1=string(pedfile).rfind("/");
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strcpy(froot,pedfile+pos1);
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pos=string(froot).find(".raw");
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froot[pos]='\0';
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}
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cout << "PEDESTAL " << endl;
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if (string(pedfile).find(".tif") == std::string::npos) {
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sprintf(fname, "%s", pedfile);
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cout << "PEDESTAL " << endl;
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if (pedfile.find(".tif") == std::string::npos) {
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sprintf(fname, "%s", pedfile.c_str());
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cout << fname << endl;
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std::time(&end_time);
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//cout << "aaa" << std::ctime(&end_time) << endl;
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mt->setFrameMode(ePedestal);
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// sprintf(fn,fformat,irun);
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filebin.open((const char *)(fname), ios::in | ios::binary);
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// //open file
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if (filebin.is_open()) {
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ff = -1;
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ff = -1;
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while (decoder->readNextFrame(filebin, ff, np, buff)) {
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if (np == numberOfPackets) {
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mt->pushData(buff);
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if (np == numberOfPackets) {
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mt->pushData(buff);
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mt->nextThread();
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mt->popFree(buff);
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ifr++;
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if (ifr % 100 == 0)
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cout << ifr << " " << ff << " " << np << endl;
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} else
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cout << ifr << " " << ff << " " << np << endl;
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if (ifr % 100 == 0)
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cout << ifr << " " << ff << " " << np << endl;
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// break;
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} else {
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cout << ifr << " " << ff << " " << np << endl;
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break;
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}
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ff = -1;
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}
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filebin.close();
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while (mt->isBusy()) {
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;
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}
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;
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sprintf(imgfname, "%s/%s_ped.tiff", outdir,froot);
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}
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sprintf(imgfname, "%s/%s_ped.tiff", outdir.c_str(),froot);
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mt->writePedestal(imgfname);
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sprintf(imgfname, "%s/%s_var.tiff", outdir,froot);
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sprintf(imgfname, "%s/%s_var.tiff", outdir.c_str(),froot);
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mt->writePedestalRMS(imgfname);
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} else
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cout << "Could not open pedestal file " << fname
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<< " for reading " << endl;
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} else {
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float *pp = ReadFromTiff(pedfile, nny, nnx);
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if (pp && (int)nnx == nx && (int)nny == ny) {
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for (int i = 0; i < nx * ny; i++) {
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cout << "Could not open pedestal file " << fname
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<< " for reading " << endl;
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} else {
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float *pp = ReadFromTiff(pedfile.c_str(), nny, nnx);
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if (pp && (int)nnx == nx && (int)nny == ny) {
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for (int i = 0; i < nx * ny; i++) {
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ped[i] = pp[i];
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}
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delete[] pp;
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mt->setPedestal(ped);
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cout << "Pedestal set from tiff file " << pedfile << endl;
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} else {
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cout << "Could not open pedestal tiff file " << pedfile
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}
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delete[] pp;
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mt->setPedestal(ped);
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cout << "Pedestal set from tiff file " << pedfile << endl;
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} else {
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cout << "Could not open pedestal tiff file " << pedfile
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<< " for reading " << endl;
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}
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}
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std::time(&end_time);
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cout << std::ctime(&end_time) << endl;
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}
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}
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std::time(&end_time);
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cout << std::ctime(&end_time) << endl;
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ifr = 0;
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int ifile = 0;
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mt->setFrameMode(eFrame);
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//t filelist=0;
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ifstream flist;
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flist.open (args["flist"].c_str(), std::ifstream::in);
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if (flist.is_open()) {
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cout << "Using file list" << endl;
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runmin=0;
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runmax=0;
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while (flist.getline(ffname,10000)){
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cout << ffname << endl;
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runmax++;
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}
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runmax--;
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flist.close();
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cout << "Found " << runmax << " files " << endl;
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flist.open (fformat, std::ifstream::in);
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}
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for (int irun = runmin; irun <= runmax; irun++) {
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cout << "DATA ";
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// sprintf(fn,fformat,irun);
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sprintf(ffname, "%s/%s.raw", indir, fformat);
|
||||
sprintf(fname, (const char*)ffname, irun);
|
||||
sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
sprintf(imgfname, (const char*)ffname, irun);
|
||||
sprintf(ffname, "%s/%s.clust", outdir, fformat);
|
||||
sprintf(cfname, (const char*)ffname, irun);
|
||||
// sprintf(ffname, "%s/%s.raw", indir, fformat);
|
||||
// sprintf(fname, (const char*)ffname, irun);
|
||||
// sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
// sprintf(imgfname, (const char*)ffname, irun);
|
||||
// sprintf(ffname, "%s/%s.clust", outdir, fformat);
|
||||
// sprintf(cfname, (const char*)ffname, irun);
|
||||
if (flist.is_open()) {
|
||||
flist.getline(ffname,10000);
|
||||
cout << "file list " << ffname << endl;
|
||||
} else {
|
||||
//sprintf(ffname,(const char*)fformat,irun);
|
||||
sprintf(ffname,args["fformat"].c_str(),irun);
|
||||
cout << "loop " << ffname << endl;
|
||||
}
|
||||
cout << "ffname "<< ffname << endl;
|
||||
sprintf(fname, "%s/%s.raw",indir.c_str(),ffname);
|
||||
sprintf(imgfname, "%s/%s.tiff",outdir.c_str(),ffname);
|
||||
sprintf(cfname, "%s/%s.clust",outdir.c_str(),ffname);
|
||||
|
||||
|
||||
cout << fname << " ";
|
||||
cout << imgfname << endl;
|
||||
std::time(&end_time);
|
||||
@ -323,7 +418,7 @@ int main(int argc, char *argv[]) {
|
||||
// //open file
|
||||
ifile = 0;
|
||||
if (filebin.is_open()) {
|
||||
if (thr <= 0 && cf != 0) { // cluster finder
|
||||
if (cf != 0) { // cluster finder
|
||||
if (of == NULL) {
|
||||
of = fopen(cfname, "w");
|
||||
if (of) {
|
||||
@ -341,7 +436,7 @@ int main(int argc, char *argv[]) {
|
||||
ff = -1;
|
||||
ifr = 0;
|
||||
while (decoder->readNextFrame(filebin, ff, np, buff)) {
|
||||
if (np == numberOfPackets) {
|
||||
if (np == numberOfPackets) {
|
||||
// //push
|
||||
mt->pushData(buff);
|
||||
// // //pop
|
||||
@ -350,21 +445,26 @@ int main(int argc, char *argv[]) {
|
||||
|
||||
ifr++;
|
||||
if (ifr % 100 == 0)
|
||||
cout << ifr << " " << ff << endl;
|
||||
cout << ifr << " " << ff << " " << np << endl;
|
||||
//break;
|
||||
if (nframes > 0) {
|
||||
if (ifr % nframes == 0) {
|
||||
sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat,
|
||||
ifile);
|
||||
sprintf(imgfname, (const char*)ffname, irun);
|
||||
// sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat,
|
||||
// ifile);
|
||||
// sprintf(imgfname, (const char*)ffname, irun);
|
||||
sprintf(imgfname, "%s/%s_f%05d.tiff",outdir.c_str(),ffname,ifile);
|
||||
while (mt->isBusy())
|
||||
;
|
||||
|
||||
mt->writeImage(imgfname, thr1);
|
||||
mt->clearImage();
|
||||
ifile++;
|
||||
}
|
||||
}
|
||||
} else {
|
||||
cout << "bp " << ifr << " " << ff << " " << np << endl;
|
||||
//break;
|
||||
}
|
||||
} else {
|
||||
cout << "bp " << ifr << " " << ff << " " << np << endl;
|
||||
//break;
|
||||
}
|
||||
ff = -1;
|
||||
}
|
||||
cout << "--" << endl;
|
||||
@ -374,13 +474,17 @@ int main(int argc, char *argv[]) {
|
||||
}
|
||||
if (nframes >= 0) {
|
||||
if (nframes > 0) {
|
||||
sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat, ifile);
|
||||
sprintf(imgfname, (const char*)ffname, irun);
|
||||
sprintf(imgfname, "%s/%s_f%05d.tiff",outdir.c_str(),ffname,ifile);
|
||||
// sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat, ifile);
|
||||
//sprintf(imgfname, (const char*)ffname, irun);
|
||||
} else {
|
||||
sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
sprintf(imgfname, (const char*)ffname, irun);
|
||||
sprintf(imgfname, "%s/%s.tiff",outdir.c_str(),ffname);
|
||||
// sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
// sprintf(imgfname, (const char*)ffname, irun);
|
||||
}
|
||||
cout << "Writing tiff to " << imgfname << " " << thr1 << endl;
|
||||
cout << "Writing tiff to " << imgfname << " " << thr1 << endl;
|
||||
while (mt->isBusy())
|
||||
;
|
||||
mt->writeImage(imgfname, thr1);
|
||||
mt->clearImage();
|
||||
if (of) {
|
||||
@ -395,11 +499,16 @@ int main(int argc, char *argv[]) {
|
||||
cout << "Could not open " << fname << " for reading " << endl;
|
||||
}
|
||||
if (nframes < 0) {
|
||||
sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
strcpy(imgfname, ffname);
|
||||
cout << "Writing tiff to " << imgfname << " " << thr1 << endl;
|
||||
mt->writeImage(imgfname, thr1);
|
||||
//sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
// strcpy(imgfname, ffname);
|
||||
sprintf(imgfname, "%s/%s_tot.tiff",outdir.c_str(),ffname);
|
||||
cout << "Writing tiff to " << imgfname << " " << thr1 << endl;
|
||||
while (mt->isBusy())
|
||||
;
|
||||
mt->writeImage(imgfname, thr1);
|
||||
}
|
||||
if (flist.is_open()) {
|
||||
flist.close();
|
||||
}
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
Reference in New Issue
Block a user