mirror of
https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2025-06-17 15:27:13 +02:00
Jf strixelmap with roi (#715)
* Fix ROI mapping, Formatting, Minor edit --------- Co-authored-by: vhinger182 <viktoria.hinger@psi.ch> Co-authored-by: vhinger182 <hinger_v@hv_home_lt1.localdomain>
This commit is contained in:
Dhanya Thattil
@ -38,21 +38,21 @@
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#include <sys/stat.h>
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#include <ctime>
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using namespace std;
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//using namespace std;
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int main(int argc, char *argv[]) {
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if (argc < 5) {
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cout << "Usage is " << argv[0]
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<< "indir outdir fname(no extension) fextension [runmin] [runmax] [pedfile (raw or tiff)] [threshold] "
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std::cout << "Usage is " << argv[0]
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<< "indir outdir fname(with formatting, no extension) fextension [runmin] [runmax] [pedfile (raw or tiff)] [threshold] "
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"[nframes] [xmin xmax ymin ymax] [gainmap]"
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<< endl;
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cout << "threshold <0 means analog; threshold=0 means cluster finder; "
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<< std::endl;
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std::cout << "threshold <0 means analog; threshold=0 means cluster finder; "
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"threshold>0 means photon counting"
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<< endl;
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cout << "nframes <0 means sum everything; nframes=0 means one file per "
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<< std::endl;
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std::cout << "nframes <0 means sum everything; nframes=0 means one file per "
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"run; nframes>0 means one file every nframes"
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<< endl;
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<< std::endl;
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return 1;
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}
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@ -151,6 +151,10 @@ int main(int argc, char *argv[]) {
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if ( filebin.read( (char *)&hbuffer, sizeof(header) ) ) {
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memcpy(&croi, &hbuffer.detHeader.detSpec1, 8);
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std::cout << "Read ROI [" << croi.xmin << ", " << croi.xmax << ", " << croi.ymin << ", " << croi.ymax << "]" << std::endl;
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xxmin = croi.xmin;
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xxmax = croi.xmax;
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yymin = croi.ymin;
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yymax = croi.ymax;
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} else
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std::cout << "reading error" << std::endl;
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filebin.close();
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@ -158,7 +162,7 @@ int main(int argc, char *argv[]) {
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std::cout << "Could not open " << fname << " for reading " << std::endl;
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#endif
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jungfrauLGADStrixelsData *decoder = new jungfrauLGADStrixelsData( croi.xmin, croi.xmax, croi.ymin, croi.ymax );
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jungfrauLGADStrixelsData *decoder = new jungfrauLGADStrixelsData( xxmin, xxmax, yymin, yymax );
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int nx = 1024/3, ny = 512*5;
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#endif
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#ifdef JFSTRXCHIP1
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@ -231,9 +235,9 @@ int main(int argc, char *argv[]) {
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//int dsize = decoder->getDataSize();
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if (thr > 0) {
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cout << "threshold is " << thr << endl;
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filter->setThreshold(thr);
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cf = 0;
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std::cout << "threshold is " << thr << std::endl;
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filter->setThreshold(thr);
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cf = 0;
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} else
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cf = 1;
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@ -287,71 +291,71 @@ int main(int argc, char *argv[]) {
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froot[pos]='\0';
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}
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cout << "PEDESTAL " << endl;
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// sprintf(imgfname, "%s/pedestals.tiff", outdir);
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std::cout << "PEDESTAL " << std::endl;
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// sprintf(imgfname, "%s/pedestals.tiff", outdir);
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if (string(pedfile).find(".tif") == std::string::npos) {
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sprintf(fname, "%s", pedfile);
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std::cout << fname << std::endl;
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std::time(&end_time);
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std::cout << "aaa" << std::ctime(&end_time) << std::endl;
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mt->setFrameMode(ePedestal);
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// sprintf(fn,fformat,irun);
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filebin.open((const char *)(fname), ios::in | ios::binary);
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// //open file
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if (filebin.is_open()) {
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std::cout << "bbbb" << std::ctime(&end_time) << std::endl;
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ff = -1;
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while (decoder->readNextFrame(filebin, ff, np, buff)) {
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// if (np == 40) {
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if ((ifr+1) % 100 == 0) {
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std::cout << " ****" << decoder->getValue(buff,20,20);// << endl;
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}
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mt->pushData(buff);
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mt->nextThread();
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mt->popFree(buff);
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ifr++;
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if (ifr % 100 == 0) {
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std::cout << " ****" << ifr << " " << ff << " " << np << std::endl;
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} //else
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//cout << ifr << " " << ff << " " << np << endl;
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if (ifr>=1000)
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break;
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ff = -1;
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}
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filebin.close();
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while (mt->isBusy()) {
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;
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}
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sprintf(imgfname, "%s/%s_ped.tiff", outdir, froot);
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mt->writePedestal(imgfname);
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sprintf(imgfname, "%s/%s_rms.tiff", outdir, froot);
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mt->writePedestalRMS(imgfname);
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} else
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std::cout << "Could not open pedestal file " << fname
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<< " for reading " << std::endl;
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} else {
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float *pp = ReadFromTiff(pedfile, nny, nnx);
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if (pp && (int)nnx == nx && (int)nny == ny) {
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for (int i = 0; i < nx * ny; i++) {
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ped[i] = pp[i];
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}
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delete[] pp;
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mt->setPedestal(ped);
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std::cout << "Pedestal set from tiff file " << pedfile << std::endl;
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} else {
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std::cout << "Could not open pedestal tiff file " << pedfile
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<< " for reading " << std::endl;
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}
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}
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std::time(&end_time);
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std::cout << std::ctime(&end_time) << std::endl;
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if (string(pedfile).find(".tif") == std::string::npos) {
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sprintf(fname, "%s", pedfile);
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std::cout << fname << std::endl;
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std::time(&end_time);
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std::cout << "aaa" << std::ctime(&end_time) << std::endl;
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mt->setFrameMode(ePedestal);
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// sprintf(fn,fformat,irun);
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filebin.open((const char *)(fname), ios::in | ios::binary);
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// //open file
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if (filebin.is_open()) {
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std::cout << "bbbb" << std::ctime(&end_time) << std::endl;
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ff = -1;
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while (decoder->readNextFrame(filebin, ff, np, buff)) {
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// if (np == 40) {
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if ((ifr+1) % 100 == 0) {
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std::cout << " ****" << decoder->getValue(buff,20,20);// << endl;
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}
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mt->pushData(buff);
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mt->nextThread();
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mt->popFree(buff);
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ifr++;
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if (ifr % 100 == 0) {
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std::cout << " ****" << ifr << " " << ff << " " << np << std::endl;
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} //else
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//cout << ifr << " " << ff << " " << np << endl;
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if (ifr>=1000)
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break;
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ff = -1;
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}
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filebin.close();
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while (mt->isBusy()) {
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;
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}
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sprintf(imgfname, "%s/%s_ped.tiff", outdir, froot);
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mt->writePedestal(imgfname);
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sprintf(imgfname, "%s/%s_rms.tiff", outdir, froot);
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mt->writePedestalRMS(imgfname);
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} else
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std::cout << "Could not open pedestal file " << fname
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<< " for reading " << std::endl;
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} else {
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float *pp = ReadFromTiff(pedfile, nny, nnx);
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if (pp && (int)nnx == nx && (int)nny == ny) {
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for (int i = 0; i < nx * ny; i++) {
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ped[i] = pp[i];
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}
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delete[] pp;
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mt->setPedestal(ped);
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std::cout << "Pedestal set from tiff file " << pedfile << std::endl;
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} else {
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std::cout << "Could not open pedestal tiff file " << pedfile
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<< " for reading " << std::endl;
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}
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}
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std::time(&end_time);
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std::cout << std::ctime(&end_time) << std::endl;
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}
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ifr = 0;
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int ifile = 0;
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@ -359,101 +363,101 @@ int main(int argc, char *argv[]) {
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for (int irun = runmin; irun <= runmax; irun++) {
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std::cout << "DATA ";
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// sprintf(fn,fformat,irun);
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sprintf(ffname, "%s/%s.%s", indir, fformat, fext);
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sprintf(fname, (const char*)ffname, irun);
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sprintf(ffname, "%s/%s.tiff", outdir, fformat);
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sprintf(imgfname, (const char*)ffname, irun);
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sprintf(ffname, "%s/%s.clust", outdir, fformat);
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sprintf(cfname, (const char*)ffname, irun);
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std::cout << fname << " ";
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std::cout << imgfname << std::endl;
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std::time(&end_time);
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// sprintf(fn,fformat,irun);
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sprintf(ffname, "%s/%s.%s", indir, fformat, fext);
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sprintf(fname, (const char*)ffname, irun);
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sprintf(ffname, "%s/%s.tiff", outdir, fformat);
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sprintf(imgfname, (const char*)ffname, irun);
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sprintf(ffname, "%s/%s.clust", outdir, fformat);
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sprintf(cfname, (const char*)ffname, irun);
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std::cout << fname << " ";
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std::cout << imgfname << std::endl;
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std::time(&end_time);
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std::cout << std::ctime(&end_time) << std::endl;
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// cout << fname << " " << outfname << " " << imgfname << endl;
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filebin.open((const char *)(fname), ios::in | ios::binary);
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// //open file
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ifile = 0;
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if (filebin.is_open()) {
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if (thr <= 0 && cf != 0) { // cluster finder
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if (of == NULL) {
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of = fopen(cfname, "w");
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if (of) {
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mt->setFilePointer(of);
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std::cout << "file pointer set " << std::endl;
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} else {
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std::cout << "Could not open " << cfname << " for writing "
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<< std::endl;
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mt->setFilePointer(NULL);
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return 1;
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}
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}
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}
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// //while read frame
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ff = -1;
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ifr = 0;
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while (decoder->readNextFrame(filebin, ff, np, buff)) {
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// if (np == 40) {
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// //push
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if ((ifr+1) % 100 == 0) {
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std::cout << " ****" << decoder->getValue(buff,20,20);// << endl;
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}
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mt->pushData(buff);
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// // //pop
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mt->nextThread();
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mt->popFree(buff);
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ifr++;
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if (ifr % 100 == 0)
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std::cout << " " << ifr << " " << ff << std::endl;
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if (nframes > 0) {
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if (ifr % nframes == 0) {
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sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat,
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ifile);
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sprintf(imgfname, (const char*)ffname, irun);
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mt->writeImage(imgfname, thr1);
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mt->clearImage();
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ifile++;
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}
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}
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// } else
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// cout << ifr << " " << ff << " " << np << endl;
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ff = -1;
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}
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std::cout << "--" << std::endl;
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filebin.close();
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while (mt->isBusy()) {
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;
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}
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if (nframes >= 0) {
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if (nframes > 0) {
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sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat, ifile);
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sprintf(imgfname, (const char*)ffname, irun);
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} else {
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sprintf(ffname, "%s/%s.tiff", outdir, fformat);
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sprintf(imgfname, (const char*)ffname, irun);
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}
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std::cout << "Writing tiff to " << imgfname << " " << thr1 << std::endl;
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mt->writeImage(imgfname, thr1);
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mt->clearImage();
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if (of) {
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fclose(of);
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of = NULL;
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mt->setFilePointer(NULL);
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}
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}
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std::time(&end_time);
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std::cout << std::ctime(&end_time) << std::endl;
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// cout << fname << " " << outfname << " " << imgfname << endl;
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filebin.open((const char *)(fname), ios::in | ios::binary);
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// //open file
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ifile = 0;
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if (filebin.is_open()) {
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if (thr <= 0 && cf != 0) { // cluster finder
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if (of == NULL) {
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of = fopen(cfname, "w");
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if (of) {
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mt->setFilePointer(of);
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std::cout << "file pointer set " << std::endl;
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} else {
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std::cout << "Could not open " << cfname << " for writing "
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<< std::endl;
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mt->setFilePointer(NULL);
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return 1;
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}
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}
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}
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// //while read frame
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ff = -1;
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ifr = 0;
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while (decoder->readNextFrame(filebin, ff, np, buff)) {
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// if (np == 40) {
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// //push
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if ((ifr+1) % 100 == 0) {
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std::cout << " ****" << decoder->getValue(buff,20,20);// << endl;
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}
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mt->pushData(buff);
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// // //pop
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mt->nextThread();
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mt->popFree(buff);
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ifr++;
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if (ifr % 100 == 0)
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std::cout << " " << ifr << " " << ff << std::endl;
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if (nframes > 0) {
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if (ifr % nframes == 0) {
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sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat,
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ifile);
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sprintf(imgfname, (const char*)ffname, irun);
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mt->writeImage(imgfname, thr1);
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mt->clearImage();
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ifile++;
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}
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}
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// } else
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// cout << ifr << " " << ff << " " << np << endl;
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ff = -1;
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}
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std::cout << "--" << std::endl;
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filebin.close();
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while (mt->isBusy()) {
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;
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}
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if (nframes >= 0) {
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if (nframes > 0) {
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sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat, ifile);
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sprintf(imgfname, (const char*)ffname, irun);
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} else {
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sprintf(ffname, "%s/%s.tiff", outdir, fformat);
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sprintf(imgfname, (const char*)ffname, irun);
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}
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std::cout << "Writing tiff to " << imgfname << " " << thr1 << std::endl;
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mt->writeImage(imgfname, thr1);
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mt->clearImage();
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if (of) {
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fclose(of);
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of = NULL;
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mt->setFilePointer(NULL);
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}
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}
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std::time(&end_time);
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std::cout << std::ctime(&end_time) << std::endl;
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} else
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std::cout << "Could not open " << fname << " for reading " << std::endl;
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} else
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std::cout << "Could not open " << fname << " for reading " << std::endl;
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}
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if (nframes < 0) {
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sprintf(ffname, "%s/%s.tiff", outdir, fformat);
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strcpy(imgfname, ffname);
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std::cout << "Writing tiff to " << imgfname << " " << thr1 << std::endl;
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mt->writeImage(imgfname, thr1);
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sprintf(ffname, "%s/%s.tiff", outdir, fformat);
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strcpy(imgfname, ffname);
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std::cout << "Writing tiff to " << imgfname << " " << thr1 << std::endl;
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mt->writeImage(imgfname, thr1);
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}
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return 0;
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}
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