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https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2025-04-22 03:40:04 +02:00
Update data structures and eta functions for JF strixels
This commit is contained in:
parent
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943a85cbd5
@ -2,7 +2,11 @@
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// Copyright (C) 2021 Contributors to the SLS Detector Package
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#ifndef JUNGFRAULGADSTRIXELDATA_H
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#define JUNGFRAULGADSTRIXELDATA_H
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#ifdef CINT
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#include "sls/sls_detector_defs_CINT.h"
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#else
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#include "sls/sls_detector_defs.h"
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#endif
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#include "slsDetectorData.h"
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/*
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@ -32,7 +36,7 @@ typedef struct {
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uint64_t bunchNumber; /**< is the frame number */
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uint64_t pre; /**< something */
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} jf_header;
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} jf_header; //Aldo's header
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using namespace std;
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@ -41,7 +45,11 @@ class jungfrauLGADStrixelsData : public slsDetectorData<uint16_t> {
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private:
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int iframe;
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#ifdef ALDO //VH
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using header = jf_header; //VH
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#else //VH
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using header = sls::defs::sls_receiver_header;
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#endif //VH
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public:
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/**
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Implements the slsReceiverData structure for the moench02 prototype read
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@ -53,6 +61,9 @@ class jungfrauLGADStrixelsData : public slsDetectorData<uint16_t> {
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: slsDetectorData<uint16_t>(1024/5, 512*5,
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512 * 1024 * 2 + sizeof(header)) {
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cout << "aaa" << endl;
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#ifdef ALDO //VH
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cout<< "using reduced jf_header" << endl; //VH
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#endif //VH
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for (int ix = 0; ix < 1024/5; ix++) {
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for (int iy = 0; iy < 512*5; iy++) {
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dataMap[iy][ix] = sizeof(header);//+ ( 1024 * 5 + 300) * 2; //somewhere on the guardring of the LGAD
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@ -61,44 +72,51 @@ class jungfrauLGADStrixelsData : public slsDetectorData<uint16_t> {
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#endif
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}
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}
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int x0=256+10, x1=256+246;
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int y0=10, y1=256-10;
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//chip1
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/*
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* TL;DR comments: y0 is too high by 1, group 1 and group 2 are by one row too short
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* group34 by 2 rows, x is by one column too short
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* NOTE: If x0, x1, y0 are changed, likely also ox (and oy and ooy) will be affected!
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*/
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cout << "G0" << endl; //chip coordinates of chip1 group1: x=255+10 to x=255+246, y=10 to y=64
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//9 pixels guard ring, bonding shift by one pixel in y, one square pixel in x on the left
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int x0=256+10, x1=256+246; //excludes first column (in chip coordinates)
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int y0=10, y1=256-10; //y1 does nothing
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int ix,iy;
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int ox=0, oy=0, ooy=0;
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ox=0;
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cout << "G0" << endl;
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//chip1
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for (int ipx=x0; ipx<x1; ipx++) {
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for (int ipy=y0; ipy<y0+54; ipy++) {
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for (int ipy=y0; ipy<y0+54; ipy++) { //y0+54 excludes the last row (in chip coordinates), should be y0+55 to include all rows
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ix=(ipx-x0+ox)/3;
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iy=(ipx-x0+ox)%3+(ipy-y0+oy)*3+ooy;
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dataMap[iy][ix] = sizeof(header) + (1024 * ipy + ipx) * 2;
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// cout << ipx << " " << ipy << " " << ix << " " << iy << endl;
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// cout << ipx << " " << ipy << " " << ix << " " << iy << endl;
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}
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}
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cout << "G1" << endl;
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cout << "G1" << endl; //chip coordinates of chip1 group2: x=255+12 to x=255+246, y=65 to y=128
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//3 square pixels in x on the left
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oy=-54;
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ooy=54*3;
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ox=3;
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for (int ipx=x0; ipx<x1; ipx++) {
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for (int ipy=y0+54; ipy<y0+64+54; ipy++) {
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for (int ipy=y0+54; ipy<y0+64+54; ipy++) { //I think y0+54 catches the last row of group1! Should be y0+55 if we want to include all rows? And y0+55+64
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ix=(ipx-x0+ox)/5;
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iy=(ipx-x0+ox)%5+(ipy-y0+oy)*5+ooy;
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dataMap[iy][ix] = sizeof(header) + (1024 * ipy + ipx) * 2;
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}
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}
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cout << "G2" << endl;
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cout << "G2" << endl; //chip coordinates of chip1 group34: x=255+11 to x=255+246, y=129 to y=247
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//2 square pixels on the left
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oy=-54-64;
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ooy=54*3+64*5;
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ox=3;
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for (int ipx=x0; ipx<x1; ipx++) {
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for (int ipy=y0+64+54; ipy<y0+64*2+54*2; ipy++) {
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for (int ipy=y0+64+54; ipy<y0+64*2+54*2; ipy++) { //Same as above, I think it should be y0+55+64 and y0+55*2+64*2 to include all rows
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ix=(ipx-x0+ox)/4;
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iy=(ipx-x0+ox)%4+(ipy-y0+oy)*4+ooy;
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dataMap[iy][ix] = sizeof(header) + (1024 * ipy + ipx) * 2;
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@ -106,43 +124,50 @@ class jungfrauLGADStrixelsData : public slsDetectorData<uint16_t> {
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}
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//chip 6
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/*
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* TL;DR comments: y0 is too high by 3, group34 and group 1 are by one row too short
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* x is by two columns too short
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* NOTE: If x0, x1, y0 are changed, likely also ox (and oy and ooy) will be affected!
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*/
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cout << "G0" << endl; //chip coordinates of chip6 group34: x=255+256+9 to x=255+256+244, y=255+8 to y=255+126
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//9 pixels guard ring, bonding shift by one pixel in -y, 2 square pixels in x on the right
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x0=256*2+10;
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y0=256+10;
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x1=256*2+246;
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ooy=256*5;
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oy=0;
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ox=1;
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cout << "G0" << endl;
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for (int ipx=x0; ipx<x1; ipx++) {
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for (int ipy=y0; ipy<y0+54+64; ipy++) {
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for (int ipy=y0; ipy<y0+54+64; ipy++) { //shifted by 3 rows because of y0, if y0 is corrected it should be y0+55+64 to include all rows
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ix=(ipx-x0+ox)/4;
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iy=(ipx-x0+ox)%4+(ipy-y0+oy)*4+ooy;
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dataMap[iy][ix] = sizeof(header) + (1024 * ipy + ipx) * 2;
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if (ipx==x0)
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cout << ipx << " " << ipy << " " << ix << " " << iy << endl;
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//if (ipx==x0)
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// cout << ipx << " " << ipy << " " << ix << " " << iy << endl;
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}
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}
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cout << "G1" << endl;
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cout << "G1" << endl; //chip coordinates of chip6 group2: x=255+256+9 to x=255+256+243, y=255+127 to y=255+190
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//3 square pixels in x on the right
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oy=-54-64;
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ooy+=(54+64)*4;
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ox=1;
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for (int ipx=x0; ipx<x1; ipx++) {
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for (int ipy=y0+54+64; ipy<y0+64*2+54; ipy++) {
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for (int ipy=y0+54+64; ipy<y0+64*2+54; ipy++) { //shifted by 3 rows because of y0, if y0 is corrected it should be y0+55+64 and y0+55+64*2 to include all rows
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ix=(ipx-x0+ox)/5;
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iy=(ipx-x0+ox)%5+(ipy-y0+oy)*5+ooy;
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dataMap[iy][ix] = sizeof(header) + (1024 * ipy + ipx) * 2;
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}
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}
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cout << "G2" << endl;
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cout << "G2" << endl; //chip coordinates of chip6 group1: x=255+256+9 to x=255+256+245, y=255+191 to y=255+245
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//one square pixel in x on the right
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oy=-54-64*2;
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ooy+=64*5;
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ox=1;
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for (int ipx=x0; ipx<x1; ipx++) {
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for (int ipy=y0+64*2+54; ipy<y0+64*2+54*2; ipy++) {
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for (int ipy=y0+64*2+54; ipy<y0+64*2+54*2; ipy++) { //shifted by 3 rows because of y0, if y0 is corrected it should be y0+55+64*2 and y0+55*2+64*2
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ix=(ipx-x0+ox)/3;
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iy=(ipx-x0+ox)%3+(ipy-y0+oy)*3+ooy;
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dataMap[iy][ix] = sizeof(header) + (1024 * ipy + ipx) * 2;
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@ -206,7 +231,11 @@ class jungfrauLGADStrixelsData : public slsDetectorData<uint16_t> {
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int getFrameNumber(char *buff) {
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return ((header *)buff)->detHeader.frameNumber;
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#ifdef ALDO //VH
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return ((header *)buff)->bunchNumber; //VH
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#else //VH
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return ((header *)buff)->detHeader.frameNumber;
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#endif //VH
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};
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/**
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@ -219,7 +248,11 @@ class jungfrauLGADStrixelsData : public slsDetectorData<uint16_t> {
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*/
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int getPacketNumber(char *buff) {
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return ((header *)buff)->detHeader.packetNumber;
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#ifdef ALDO //VH
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return -1; //VH //TODO: Keep in mind in case of bugs!
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#else //VH
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return ((header *)buff)->detHeader.packetNumber;
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#endif //VH
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};
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@ -265,8 +298,6 @@ class jungfrauLGADStrixelsData : public slsDetectorData<uint16_t> {
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return NULL;
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};
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/* /**
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/* Loops over a memory slot until a complete frame is found (i.e. all */
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/* packets 0 to nPackets, same frame number). purely virtual func \param */
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/* data pointer to the memory to be analyzed \param ndata reference to the */
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@ -0,0 +1,305 @@
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// SPDX-License-Identifier: LGPL-3.0-or-other
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// Copyright (C) 2021 Contributors to the SLS Detector Package
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#ifndef JUNGFRAULGADSTRIXELSDATASINGLECHIP_H
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#define JUNGFRAULGADSTRIXELSDATASINGLECHIP_H
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#ifdef CINT
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#include "sls/sls_detector_defs_CINT.h"
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#else
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#include "sls/sls_detector_defs.h"
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#endif
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#include "slsDetectorData.h"
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/*
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/afs/psi.ch/project/mythen/Anna/slsDetectorPackageDeveloperMpc2011/slsDetectorCalibration/jungfrauExecutables
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make -f Makefile.rawdataprocess jungfrauRawDataProcessStrx
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../dataStructures/jungfrauLGADStrixelsData.h
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*/
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//#define VERSION_V2
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/**
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@short structure for a Detector Packet or Image Header
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@li frameNumber is the frame number
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@li expLength is the subframe number (32 bit eiger) or real time exposure
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time in 100ns (others)
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@li packetNumber is the packet number
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@li bunchId is the bunch id from beamline
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@li timestamp is the time stamp with 10 MHz clock
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@li modId is the unique module id (unique even for left, right, top, bottom)
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@li xCoord is the x coordinate in the complete detector system
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@li yCoord is the y coordinate in the complete detector system
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@li zCoord is the z coordinate in the complete detector system
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@li debug is for debugging purposes
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@li roundRNumber is the round robin set number
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@li detType is the detector type see :: detectorType
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@li version is the version number of this structure format
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*/
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namespace strixelSingleChip {
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constexpr int nc_chip = 256;
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constexpr int nr_chip = 256;
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constexpr int gr = 9;
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//Group 1: 25um pitch, groups of 3, 1 column of square pixels
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constexpr int g1_ncols{ (nc_chip-(2*gr)-1)/3 }; //79
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constexpr int g1_nrows{ ( (nr_chip/4)-gr )*3 }; //165
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//Group 2: 15um pitch, groups of 5, 3 columns of square pixels
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constexpr int g2_ncols{ (nc_chip-(2*gr)-3)/5 }; //47
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constexpr int g2_nrows{ (nr_chip/4)*5 }; //320
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//Group 3: 18.75um pitch, groups of 4, 2 columns of square pixels (double the size of the other groups)
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constexpr int g3_ncols{ (nc_chip-(2*gr)-2)/4 }; //59
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constexpr int g3_nrows{ ( ((nr_chip/4)*2)-gr )*4 }; //476
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constexpr int nc_strixel = 2*gr + 1 + g1_ncols; //group 1 is the "longest" group in x and has one extra square pixel
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constexpr int nr_strixel = 2*gr + g1_nrows + g2_nrows + g3_nrows;
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}
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typedef struct {
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uint64_t bunchNumber; /**< is the frame number */
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uint64_t pre; /**< something */
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} jf_header; //Aldo's header
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using namespace strixelSingleChip;
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class jungfrauLGADStrixelsDataSingleChip : public slsDetectorData<uint16_t> {
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private:
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int iframe;
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int mchip;
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void remapGroup( const int group ) {
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int ix, iy;
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int x0, y0, x1, y1, shifty;
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int multiplicator;
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switch (group) {
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default:
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case 1:
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multiplicator = 3;
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break;
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case 2:
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multiplicator = 5;
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break;
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case 3:
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multiplicator = 4;
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break;
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}
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if ( mchip == 1 ) {
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switch (group) {
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default:
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case 1:
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x0 = 10;
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x1 = 247;
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y0 = 10;
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y1 = 65;
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shifty = 0;
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break;
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case 2:
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x0 = 12;
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x1 = 247;
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y0 = 65;
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y1 = 129;
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shifty = ( (nr_chip/4)-gr )*3;
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break;
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case 3:
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x0 = 11;
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x1 = 247;
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y0 = 129;
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y1 = 248;
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shifty = ( (nr_chip/4)-gr )*3 + (nr_chip/4)*5;
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break;
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}
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}
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if ( mchip == 6 ) {
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switch (group) {
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default:
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case 1:
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x0 = 9;
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x1 = 246;
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y0 = 191;
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y1 = 246;
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shifty = ( (nr_chip/4)-gr+(nr_chip/4) )*4 + (nr_chip/4)*5;
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break;
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case 2:
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x0 = 9;
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x1 = 244;
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y0 = 127;
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y1 = 191;
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shifty = ( (nr_chip/4)-gr+(nr_chip/4) )*4;
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break;
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case 3:
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x0 = 9;
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x1 = 245;
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y0 = 8;
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y1 = 127;
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shifty = 0;
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break;
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}
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}
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//remapping loop
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for ( int ipx=x0; ipx!=x1; ++ipx ) {
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for ( int ipy=y0; ipy!=y1; ++ipy) {
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ix = (ipx-x0)/multiplicator;
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for ( int m=0; m!=multiplicator; ++m ) {
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if ( (ipx-x0)%multiplicator==m ) iy=(ipy-y0)*multiplicator + m + shifty;
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}
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dataMap[iy][ix] = sizeof(header) + (nc_chip * ipy + ipx) * 2;
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}
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}
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}
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public:
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#ifdef ALDO //VH
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using header = jf_header; //VH
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#else //VH
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using header = sls::defs::sls_receiver_header;
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#endif //VH
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jungfrauLGADStrixelsDataSingleChip( const int chip )
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: slsDetectorData<uint16_t>( /*nc_strixel*/nc_chip/3, /*nr_strixel*/ nr_chip*5,
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nc_chip * nr_chip * 2 + sizeof(header) ) {
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std::cout << "Jungfrau strixels single chip" << std::endl;
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#ifdef ALDO //VH
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std::cout<< "using reduced jf_header" << std::endl; //VH
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#endif //VH
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mchip = chip;
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//Fill all strixels with dummy values
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for (int ix = 0; ix != nc_strixel; ++ix) {
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for (int iy = 0; iy != nr_strixel; ++iy) {
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dataMap[iy][ix] = sizeof(header);
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#ifdef HIGHZ
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dataMask[iy][ix] = 0x3fff;
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#endif
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}
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}
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remapGroup(1);
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remapGroup(2);
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remapGroup(3);
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iframe = 0;
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std::cout << "data struct created" << std::endl;
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};
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/**
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Returns the value of the selected channel for the given dataset as
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double. \param data pointer to the dataset (including headers etc) \param
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ix pixel number in the x direction \param iy pixel number in the y
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direction \returns data for the selected channel, with inversion if
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required as double
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*/
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virtual double getValue(char *data, int ix, int iy = 0) {
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uint16_t val = getChannel(data, ix, iy) & 0x3fff;
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return val;
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};
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/**
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Returns the frame number for the given dataset. Purely virtual func.
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\param buff pointer to the dataset
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\returns frame number
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*/
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||||
|
||||
int getFrameNumber(char *buff) {
|
||||
#ifdef ALDO //VH
|
||||
return ((header *)buff)->bunchNumber; //VH
|
||||
#else //VH
|
||||
return ((header *)buff)->detHeader.frameNumber;
|
||||
#endif //VH
|
||||
};
|
||||
|
||||
/**
|
||||
|
||||
Returns the packet number for the given dataset. purely virtual func
|
||||
\param buff pointer to the dataset
|
||||
\returns packet number number
|
||||
|
||||
|
||||
|
||||
*/
|
||||
int getPacketNumber(char *buff) {
|
||||
#ifdef ALDO //VH
|
||||
//uint32_t fakePacketNumber = 1000;
|
||||
//return fakePacketNumber; //VH //TODO: Keep in mind in case of bugs! //This is definitely bad!
|
||||
return 1000;
|
||||
#else //VH
|
||||
return ((header *)buff)->detHeader.packetNumber;
|
||||
#endif //VH
|
||||
};
|
||||
|
||||
|
||||
|
||||
char *readNextFrame(std::ifstream &filebin) {
|
||||
int ff = -1, np = -1;
|
||||
return readNextFrame(filebin, ff, np);
|
||||
};
|
||||
|
||||
char *readNextFrame(std::ifstream &filebin, int &ff) {
|
||||
int np = -1;
|
||||
return readNextFrame(filebin, ff, np);
|
||||
};
|
||||
|
||||
char *readNextFrame(std::ifstream &filebin, int &ff, int &np) {
|
||||
char *data = new char[dataSize];
|
||||
char *d = readNextFrame(filebin, ff, np, data);
|
||||
if (d == NULL) {
|
||||
delete[] data;
|
||||
data = NULL;
|
||||
}
|
||||
return data;
|
||||
};
|
||||
|
||||
char *readNextFrame(std::ifstream &filebin, int &ff, int &np,char *data) {
|
||||
char *retval = 0;
|
||||
int nd;
|
||||
int fnum = -1;
|
||||
np = 0;
|
||||
int pn;
|
||||
|
||||
// cout << dataSize << endl;
|
||||
if (ff >= 0)
|
||||
fnum = ff;
|
||||
|
||||
if (filebin.is_open()) {
|
||||
if (filebin.read(data, dataSize)) {
|
||||
ff = getFrameNumber(data);
|
||||
np = getPacketNumber(data);
|
||||
return data;
|
||||
}
|
||||
}
|
||||
return NULL;
|
||||
};
|
||||
|
||||
/* Loops over a memory slot until a complete frame is found (i.e. all */
|
||||
/* packets 0 to nPackets, same frame number). purely virtual func \param */
|
||||
/* data pointer to the memory to be analyzed \param ndata reference to the */
|
||||
/* amount of data found for the frame, in case the frame is incomplete at */
|
||||
/* the end of the memory slot \param dsize size of the memory slot to be */
|
||||
/* analyzed \returns pointer to the beginning of the last good frame (might */
|
||||
/* be incomplete if ndata smaller than dataSize), or NULL if no frame is */
|
||||
/* found */
|
||||
|
||||
/* *\/ */
|
||||
virtual char *findNextFrame(char *data, int &ndata, int dsize) {
|
||||
if (dsize < dataSize)
|
||||
ndata = dsize;
|
||||
else
|
||||
ndata = dataSize;
|
||||
return data;
|
||||
};
|
||||
|
||||
// int getPacketNumber(int x, int y) {return dataMap[y][x]/packetSize;};
|
||||
};
|
||||
|
||||
#endif
|
||||
@ -0,0 +1,271 @@
|
||||
// SPDX-License-Identifier: LGPL-3.0-or-other
|
||||
// Copyright (C) 2021 Contributors to the SLS Detector Package
|
||||
#ifndef JUNGFRAUSTRIXELSHALFMODULEOLD_H
|
||||
#define JUNGFRAUSTRIXELSHALFMODULEOLD_H
|
||||
#ifdef CINT
|
||||
#include "sls/sls_detector_defs_CINT.h"
|
||||
#else
|
||||
#include "sls/sls_detector_defs.h"
|
||||
#endif
|
||||
#include "slsDetectorData.h"
|
||||
|
||||
/*
|
||||
/afs/psi.ch/project/mythen/Anna/slsDetectorPackageDeveloperMpc2011/slsDetectorCalibration/jungfrauExecutables
|
||||
make -f Makefile.rawdataprocess jungfrauRawDataProcessStrx
|
||||
../dataStructures/jungfrauLGADStrixelsData.h
|
||||
*/
|
||||
//#define VERSION_V2
|
||||
/**
|
||||
@short structure for a Detector Packet or Image Header
|
||||
@li frameNumber is the frame number
|
||||
@li expLength is the subframe number (32 bit eiger) or real time exposure
|
||||
time in 100ns (others)
|
||||
@li packetNumber is the packet number
|
||||
@li bunchId is the bunch id from beamline
|
||||
@li timestamp is the time stamp with 10 MHz clock
|
||||
@li modId is the unique module id (unique even for left, right, top, bottom)
|
||||
@li xCoord is the x coordinate in the complete detector system
|
||||
@li yCoord is the y coordinate in the complete detector system
|
||||
@li zCoord is the z coordinate in the complete detector system
|
||||
@li debug is for debugging purposes
|
||||
@li roundRNumber is the round robin set number
|
||||
@li detType is the detector type see :: detectorType
|
||||
@li version is the version number of this structure format
|
||||
*/
|
||||
|
||||
namespace strixelsOldDesign {
|
||||
constexpr int NC_STRIXEL = (1024*3);
|
||||
constexpr int NR_TOTAL = (512/3);
|
||||
constexpr int NR_STRIXEL = ( (256-4)/3 );
|
||||
}
|
||||
|
||||
typedef struct {
|
||||
uint64_t bunchNumber; /**< is the frame number */
|
||||
uint64_t pre; /**< something */
|
||||
|
||||
} jf_header; //Aldo's header
|
||||
|
||||
|
||||
using namespace strixelsOldDesign;
|
||||
class jungfrauStrixelsHalfModuleOldDesign : public slsDetectorData<uint16_t> {
|
||||
|
||||
private:
|
||||
int iframe;
|
||||
|
||||
#ifdef ALDO //VH
|
||||
using header = jf_header; //VH
|
||||
#else //VH
|
||||
using header = sls::defs::sls_receiver_header;
|
||||
#endif //VH
|
||||
public:
|
||||
/**
|
||||
Implements the slsReceiverData structure for the moench02 prototype read
|
||||
out by a module i.e. using the slsReceiver (160x160 pixels, 40 packets
|
||||
1286 large etc.) \param c crosstalk parameter for the output buffer
|
||||
|
||||
*/
|
||||
jungfrauStrixelsHalfModuleOldDesign()
|
||||
: slsDetectorData<uint16_t>( 1024*3, 512/3,
|
||||
512 * 1024 * 2 + sizeof(header) ) {
|
||||
std::cout << "Jungfrau strixels old design" << std::endl;
|
||||
#ifdef ALDO //VH
|
||||
std::cout<< "using reduced jf_header" << std::endl; //VH
|
||||
#endif //VH
|
||||
for (int ix = 0; ix != 1024*3; ++ix) {
|
||||
for (int iy = 0; iy != 512/3; ++iy) {
|
||||
dataMap[iy][ix] = sizeof(header);//+ ( 1024 * 5 + 300) * 2; //somewhere on the guardring of the LGAD
|
||||
#ifdef HIGHZ
|
||||
dataMask[iy][ix] = 0x3fff;
|
||||
#endif
|
||||
}
|
||||
}
|
||||
|
||||
//remap
|
||||
int ix, iy;
|
||||
for (int ipx=0; ipx!=1024; ++ipx) {
|
||||
for (int ipy=0; ipy!=256-4; ++ipy) {
|
||||
iy=ipy/3;
|
||||
/* //1
|
||||
if (ipy%3==0) ix=ipx*3+2;
|
||||
if (ipy%3==1) ix=ipx*3+1;
|
||||
if (ipy%3==2) ix=ipx*3;
|
||||
*/
|
||||
/* //2
|
||||
if (ipy%3==2) ix=ipx*3+2;
|
||||
if (ipy%3==0) ix=ipx*3+1;
|
||||
if (ipy%3==1) ix=ipx*3;
|
||||
*/
|
||||
/* //3
|
||||
if (ipy%3==1) ix=ipx*3+2;
|
||||
if (ipy%3==2) ix=ipx*3+1;
|
||||
if (ipy%3==0) ix=ipx*3;
|
||||
*/
|
||||
//4 //This seems to be correct //corresponds to looking from the backside of the sensor
|
||||
if (ipy%3==0) ix=ipx*3;
|
||||
if (ipy%3==1) ix=ipx*3+1;
|
||||
if (ipy%3==2) ix=ipx*3+2;
|
||||
|
||||
/* //5
|
||||
if (ipy%3==2) ix=ipx*3;
|
||||
if (ipy%3==0) ix=ipx*3+1;
|
||||
if (ipy%3==1) ix=ipx*3+2;
|
||||
*/
|
||||
/* //6
|
||||
if (ipy%3==1) ix=ipx*3;
|
||||
if (ipy%3==2) ix=ipx*3+1;
|
||||
if (ipy%3==0) ix=ipx*3+2;
|
||||
*/
|
||||
|
||||
if ( ipx!=255 && ipx!=256 && ipx!=511 && ipx!=512 && ipx!=767 && ipx!=768 ) //avoid double pixels
|
||||
// ( !( ipx%256==0 || ipx%256==255 ) || ipx==0 || ipx==1023 )
|
||||
dataMap[iy][ix] = sizeof(header) + (1024 * ipy + ipx) * 2;
|
||||
// cout << ipx << " " << ipy << " " << ix << " " << iy << endl;
|
||||
}
|
||||
}
|
||||
|
||||
iframe = 0;
|
||||
std::cout << "data struct created" << std::endl;
|
||||
};
|
||||
|
||||
/**
|
||||
Returns the value of the selected channel for the given dataset as
|
||||
double. \param data pointer to the dataset (including headers etc) \param
|
||||
ix pixel number in the x direction \param iy pixel number in the y
|
||||
direction \returns data for the selected channel, with inversion if
|
||||
required as double
|
||||
|
||||
*/
|
||||
virtual double getValue(char *data, int ix, int iy = 0) {
|
||||
|
||||
uint16_t val = getChannel(data, ix, iy) & 0x3fff;
|
||||
return val;
|
||||
};
|
||||
|
||||
/* virtual void calcGhost(char *data, int ix, int iy) { */
|
||||
/* double val=0; */
|
||||
/* ghost[iy][ix]=0; */
|
||||
|
||||
/* } */
|
||||
|
||||
/* virtual void calcGhost(char *data) { */
|
||||
/* for (int ix=0; ix<25; ix++){ */
|
||||
/* for (int iy=0; iy<200; iy++) { */
|
||||
/* calcGhost(data, ix,iy); */
|
||||
/* } */
|
||||
/* } */
|
||||
/* // cout << "*" << endl; */
|
||||
/* } */
|
||||
|
||||
/* double getGhost(int ix, int iy) { */
|
||||
/* return 0; */
|
||||
/* }; */
|
||||
|
||||
/**
|
||||
|
||||
Returns the frame number for the given dataset. Purely virtual func.
|
||||
\param buff pointer to the dataset
|
||||
\returns frame number
|
||||
|
||||
*/
|
||||
|
||||
/* class jfrau_packet_header_t { */
|
||||
/* public: */
|
||||
/* unsigned char reserved[4]; */
|
||||
/* unsigned char packetNumber[1]; */
|
||||
/* unsigned char frameNumber[3]; */
|
||||
/* unsigned char bunchid[8]; */
|
||||
/* }; */
|
||||
|
||||
|
||||
int getFrameNumber(char *buff) {
|
||||
#ifdef ALDO //VH
|
||||
return ((header *)buff)->bunchNumber; //VH
|
||||
#else //VH
|
||||
return ((header *)buff)->detHeader.frameNumber;
|
||||
#endif //VH
|
||||
};
|
||||
|
||||
/**
|
||||
|
||||
Returns the packet number for the given dataset. purely virtual func
|
||||
\param buff pointer to the dataset
|
||||
\returns packet number number
|
||||
|
||||
|
||||
|
||||
*/
|
||||
int getPacketNumber(char *buff) {
|
||||
#ifdef ALDO //VH
|
||||
//uint32_t fakePacketNumber = 1000;
|
||||
//return fakePacketNumber; //VH //TODO: Keep in mind in case of bugs! //This is definitely bad!
|
||||
return 1000;
|
||||
#else //VH
|
||||
return ((header *)buff)->detHeader.packetNumber;
|
||||
#endif //VH
|
||||
};
|
||||
|
||||
|
||||
|
||||
char *readNextFrame(std::ifstream &filebin) {
|
||||
int ff = -1, np = -1;
|
||||
return readNextFrame(filebin, ff, np);
|
||||
};
|
||||
|
||||
char *readNextFrame(std::ifstream &filebin, int &ff) {
|
||||
int np = -1;
|
||||
return readNextFrame(filebin, ff, np);
|
||||
};
|
||||
|
||||
char *readNextFrame(std::ifstream &filebin, int &ff, int &np) {
|
||||
char *data = new char[dataSize];
|
||||
char *d = readNextFrame(filebin, ff, np, data);
|
||||
if (d == NULL) {
|
||||
delete[] data;
|
||||
data = NULL;
|
||||
}
|
||||
return data;
|
||||
};
|
||||
|
||||
char *readNextFrame(std::ifstream &filebin, int &ff, int &np,char *data) {
|
||||
char *retval = 0;
|
||||
int nd;
|
||||
int fnum = -1;
|
||||
np = 0;
|
||||
int pn;
|
||||
|
||||
// cout << dataSize << endl;
|
||||
if (ff >= 0)
|
||||
fnum = ff;
|
||||
|
||||
if (filebin.is_open()) {
|
||||
if (filebin.read(data, dataSize)) {
|
||||
ff = getFrameNumber(data);
|
||||
np = getPacketNumber(data);
|
||||
return data;
|
||||
}
|
||||
}
|
||||
return NULL;
|
||||
};
|
||||
|
||||
/* Loops over a memory slot until a complete frame is found (i.e. all */
|
||||
/* packets 0 to nPackets, same frame number). purely virtual func \param */
|
||||
/* data pointer to the memory to be analyzed \param ndata reference to the */
|
||||
/* amount of data found for the frame, in case the frame is incomplete at */
|
||||
/* the end of the memory slot \param dsize size of the memory slot to be */
|
||||
/* analyzed \returns pointer to the beginning of the last good frame (might */
|
||||
/* be incomplete if ndata smaller than dataSize), or NULL if no frame is */
|
||||
/* found */
|
||||
|
||||
/* *\/ */
|
||||
virtual char *findNextFrame(char *data, int &ndata, int dsize) {
|
||||
if (dsize < dataSize)
|
||||
ndata = dsize;
|
||||
else
|
||||
ndata = dataSize;
|
||||
return data;
|
||||
};
|
||||
|
||||
// int getPacketNumber(int x, int y) {return dataMap[y][x]/packetSize;};
|
||||
};
|
||||
|
||||
#endif
|
||||
@ -217,6 +217,7 @@ void slsDetectorData<dataType>::setDataMap(int **dMap) {
|
||||
}
|
||||
}
|
||||
}
|
||||
/* //commented this part because it causes out-of-bound issues if nx or ny are larger than dataMap bounds (single-chip readout of strixel with groups of different pitches) VH 2023-02-24
|
||||
for (iy = 0; iy < ny; iy++) {
|
||||
for (ix = 0; ix < nx; ix++) {
|
||||
ip = dataMap[iy][ix] / sizeof(dataType);
|
||||
@ -224,7 +225,7 @@ void slsDetectorData<dataType>::setDataMap(int **dMap) {
|
||||
ymap[ip] = iy;
|
||||
}
|
||||
}
|
||||
|
||||
*/
|
||||
// cout << "nx:" <<nx << " ny:" << ny << endl;
|
||||
}
|
||||
|
||||
|
||||
@ -22,7 +22,7 @@ enum quadrant {
|
||||
|
||||
#include <iostream>
|
||||
#include <stdio.h>
|
||||
using namespace std;
|
||||
//using namespace std;
|
||||
|
||||
//#ifdef MYROOT1
|
||||
//: public TObject
|
||||
@ -128,7 +128,7 @@ class slsInterpolation {
|
||||
nSubPixelsY * nPixelsY);
|
||||
delete[] gm;
|
||||
} else
|
||||
cout << "Could not allocate float image " << endl;
|
||||
std::cout << "Could not allocate float image " << std::endl;
|
||||
return NULL;
|
||||
}
|
||||
|
||||
@ -323,7 +323,7 @@ class slsInterpolation {
|
||||
if (ix > 1)
|
||||
sumR += cl[ix + iy * 3];
|
||||
if (iy < 1)
|
||||
sumB = cl[ix + iy * 3];
|
||||
sumB = cl[ix + iy * 3]; //???? not "+="? VH
|
||||
if (iy > 1)
|
||||
sumT += cl[ix + iy * 3];
|
||||
}
|
||||
@ -472,13 +472,13 @@ class slsInterpolation {
|
||||
val = cl[ix + 3 * iy];
|
||||
sum += val;
|
||||
if (iy == 0)
|
||||
l += val;
|
||||
if (iy == 2)
|
||||
r += val;
|
||||
if (ix == 0)
|
||||
b += val;
|
||||
if (ix == 2)
|
||||
if (iy == 2)
|
||||
t += val;
|
||||
if (ix == 0)
|
||||
l += val;
|
||||
if (ix == 2)
|
||||
r += val;
|
||||
}
|
||||
}
|
||||
if (sum > 0) {
|
||||
@ -526,6 +526,185 @@ class slsInterpolation {
|
||||
return calcEta3X(cli, etax, etay, sum);
|
||||
}
|
||||
|
||||
/************************************************/
|
||||
/* Additional strixel eta functions by Viktoria */
|
||||
/************************************************/
|
||||
//Etax: only central row, etay: only central column
|
||||
static int calcEta1x3( double* cl, double& etax, double& etay, double& toth, double& totv ) {
|
||||
double l, r, t, b;
|
||||
//sum = cl[0] + cl[1] + cl[2] + cl[3] + cl[4] + cl[5] + cl[6] + cl[7] + cl[8];
|
||||
toth = cl[3] + cl[4] + cl[5];
|
||||
if (toth > 0) {
|
||||
l = cl[3];
|
||||
r = cl[5];
|
||||
}
|
||||
etax = (-l + r) / toth;
|
||||
totv = cl[1] + cl[4] + cl[7];
|
||||
if (toth > 0) {
|
||||
b = cl[1];
|
||||
t = cl[7];
|
||||
}
|
||||
etay = (-b + t) / totv;
|
||||
return -1;
|
||||
}
|
||||
|
||||
static int calcEta1x3( int* cl, double& etax, double& etay, double& toth, double& totv ) {
|
||||
double cli[9];
|
||||
for ( int ix = 0; ix != 9; ++ix )
|
||||
cli[ix] = cl[ix];
|
||||
return calcEta1x3( cli, etax, etay, toth , totv );
|
||||
}
|
||||
|
||||
//Eta 1x2 essentially the same as etaL, but we also return toth and totv
|
||||
static int calcEta1x2(double totquad, int corner, double sDum[2][2],
|
||||
double &etax, double &etay, double& toth, double& totv) {
|
||||
double t, r;
|
||||
if (totquad > 0) {
|
||||
switch (corner) {
|
||||
case TOP_LEFT:
|
||||
t = sDum[1][1];
|
||||
r = sDum[0][1];
|
||||
toth = sDum[0][1] + sDum[0][0];
|
||||
totv = sDum[0][1] + sDum[1][1];
|
||||
break;
|
||||
case TOP_RIGHT:
|
||||
t = sDum[1][0];
|
||||
r = sDum[0][1];
|
||||
toth = sDum[0][1] + sDum[0][0];
|
||||
totv = sDum[1][0] + sDum[0][0];
|
||||
break;
|
||||
case BOTTOM_LEFT:
|
||||
r = sDum[1][1];
|
||||
t = sDum[1][1];
|
||||
toth = sDum[1][0] + sDum[1][1];
|
||||
totv = sDum[0][1] + sDum[1][1];
|
||||
break;
|
||||
case BOTTOM_RIGHT:
|
||||
t = sDum[1][0];
|
||||
r = sDum[1][1];
|
||||
toth = sDum[1][0] + sDum[1][1];
|
||||
totv = sDum[1][0] + sDum[0][0];
|
||||
break;
|
||||
default:
|
||||
etax = -1000;
|
||||
etay = -1000;
|
||||
return 0;
|
||||
}
|
||||
// etax=r/totquad;
|
||||
// etay=t/totquad;
|
||||
etax = r / toth;
|
||||
etay = t / totv;
|
||||
}
|
||||
return 0;
|
||||
}
|
||||
|
||||
static int calcEta1x2( double *cl, double &etax, double &etay, double &sum,
|
||||
double &totquad, double sDum[2][2], double& toth, double& totv ) {
|
||||
int corner = calcQuad( cl, sum, totquad, sDum );
|
||||
calcEta1x2( totquad, corner, sDum, etax, etay, toth, totv );
|
||||
return corner;
|
||||
}
|
||||
|
||||
static int calcEta1x2( int *cl, double &etax, double &etay, double &sum,
|
||||
double &totquad, double sDum[2][2], double& toth, double& totv ) {
|
||||
int corner = calcQuad( cl, sum, totquad, sDum );
|
||||
calcEta1x2( totquad, corner, sDum, etax, etay, toth , totv );
|
||||
return corner;
|
||||
}
|
||||
|
||||
//Two functions to calculate 2x3 or 3x2 eta
|
||||
static int calcEta2x3( double* cl, double totquad, int corner, double& etax, double& etay, double& tot6 ) {
|
||||
double t, b, r;
|
||||
if (totquad > 0) {
|
||||
switch (corner) {
|
||||
case TOP_LEFT:
|
||||
case BOTTOM_LEFT:
|
||||
t = cl[6] + cl[7];
|
||||
b = cl[0] + cl[1];
|
||||
r = cl[1] + cl[4] + cl[7];
|
||||
tot6 = cl[0] + cl[1] + cl[3] + cl[4] + cl[6] + cl[7];
|
||||
break;
|
||||
case TOP_RIGHT:
|
||||
case BOTTOM_RIGHT:
|
||||
t = cl[7] + cl[8];
|
||||
b = cl[1] + cl[2];
|
||||
r = cl[2] + cl[5] + cl[8];
|
||||
tot6 = cl[1] + cl[2] + cl[4] + cl[5] + cl[7] + cl[8];
|
||||
break;
|
||||
default:
|
||||
etax = -1000;
|
||||
etay = -1000;
|
||||
return -1;
|
||||
}
|
||||
etax = r / tot6;
|
||||
etay = (-b + t) / tot6;
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
|
||||
static int calcEta3x2( double* cl, double totquad, int corner, double& etax, double& etay, double& tot6 ) {
|
||||
double t, l, r;
|
||||
if (totquad > 0) {
|
||||
switch (corner) {
|
||||
case TOP_LEFT:
|
||||
case TOP_RIGHT:
|
||||
l = cl[3] + cl[6];
|
||||
r = cl[5] + cl[8];
|
||||
t = cl[6] + cl[7] + cl[8];
|
||||
tot6 = cl[3] + cl[4] + cl[5] + cl[6] + cl[7] + cl[8];
|
||||
break;
|
||||
case BOTTOM_LEFT:
|
||||
case BOTTOM_RIGHT:
|
||||
l = cl[0] + cl[3];
|
||||
r = cl[2] + cl[5];
|
||||
t = cl[3] + cl[4] + cl[5];
|
||||
tot6 = cl[0] + cl[1] + cl[2] + cl[3] + cl[4] + cl[5];
|
||||
break;
|
||||
default:
|
||||
etax = -1000;
|
||||
etay = -1000;
|
||||
return -1;
|
||||
}
|
||||
etax = (-l + r) / tot6;
|
||||
etay = t / tot6;
|
||||
}
|
||||
return -1;
|
||||
}
|
||||
|
||||
//overload including both eta2x3 and eta3x2
|
||||
//ornt (orientation of long side (3) of eta) decides which eta is chosen
|
||||
enum orientation {
|
||||
HORIZONTAL_ORIENTATION = 0,
|
||||
VERTICAL_ORIENTATION = 1,
|
||||
UNDEFINED_ORIENTATION = -1
|
||||
};
|
||||
static int calcEta2x3( int ornt, double* cl, double& etax, double& etay, double& tot6 ) {
|
||||
double sum{};
|
||||
double totquad{};
|
||||
double sDum[2][2]{};
|
||||
int corner = calcQuad( cl, sum, totquad, sDum );
|
||||
switch (ornt) {
|
||||
case HORIZONTAL_ORIENTATION:
|
||||
calcEta3x2( cl, totquad, corner, etax, etay, tot6 );
|
||||
break;
|
||||
case VERTICAL_ORIENTATION:
|
||||
calcEta2x3( cl, totquad, corner, etax, etay, tot6 );
|
||||
break;
|
||||
default:
|
||||
etax = -1000;
|
||||
etay = -1000;
|
||||
return -1;
|
||||
}
|
||||
return corner;
|
||||
}
|
||||
|
||||
static int calcEta2x3( int strxo, int* cl, double& etax, double& etay, double& tot6 ) {
|
||||
double cli[9]{};
|
||||
for ( int ix = 0; ix != 9; ++ix )
|
||||
cli[ix] = cl[ix];
|
||||
return calcEta2x3( strxo, cli, etax, etay, tot6 );
|
||||
}
|
||||
|
||||
/* static int calcMyEta(double totquad, int quad, double *cl, double &etax,
|
||||
* double &etay) { */
|
||||
/* double l,r,t,b, sum; */
|
||||
|
||||
@ -0,0 +1,76 @@
|
||||
# SPDX-License-Identifier: LGPL-3.0-or-other
|
||||
# Copyright (C) 2021 Contributors to the SLS Detector Package
|
||||
#module add CBFlib/0.9.5
|
||||
INCDIR=-I. -I../ -I../interpolations -I../interpolations/etaVEL -I../dataStructures -I../../slsSupportLib/include/ -I../../slsReceiverSoftware/include/ -I../tiffio/include
|
||||
|
||||
LDFLAG= ../tiffio/src/tiffIO.cpp -L/usr/lib64/ -lpthread -lm -lstdc++ -pthread -lrt -ltiff -O3 -std=c++11
|
||||
|
||||
MAIN=jungfrauClusterFinder.cpp
|
||||
|
||||
|
||||
all: jungfrauRawDataProcess
|
||||
|
||||
jungfrauRawDataProcess: jungfrauRawDataProcess.cpp $(INCS) clean
|
||||
g++ -o jungfrauRawDataProcess jungfrauRawDataProcess.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DMODULE
|
||||
|
||||
jungfrauRawDataProcessStrx: jungfrauRawDataProcess.cpp $(INCS) clean
|
||||
g++ -o jungfrauRawDataProcessStrx jungfrauRawDataProcess.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DJFSTRX
|
||||
|
||||
jungfrauRawDataProcessStrxChip1: jungfrauRawDataProcess.cpp $(INCS) clean
|
||||
g++ -o jungfrauRawDataProcessStrxChip1 jungfrauRawDataProcess.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DJFSTRXCHIP1
|
||||
|
||||
jungfrauRawDataProcessStrxChip6: jungfrauRawDataProcess.cpp $(INCS) clean
|
||||
g++ -o jungfrauRawDataProcessStrxChip6 jungfrauRawDataProcess.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DJFSTRXCHIP6
|
||||
|
||||
jungfrauRawDataProcessStrxChip1Aldo: jungfrauRawDataProcess.cpp $(INCS) clean
|
||||
g++ -o jungfrauRawDataProcessStrxChip1Aldo jungfrauRawDataProcess.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DJFSTRXCHIP1 -DALDO
|
||||
|
||||
jungfrauRawDataProcessStrxChip6Aldo: jungfrauRawDataProcess.cpp $(INCS) clean
|
||||
g++ -o jungfrauRawDataProcessStrxChip6Aldo jungfrauRawDataProcess.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DJFSTRXCHIP6 -DALDO
|
||||
|
||||
jungfrauRawDataProcessStrxAldo: jungfrauRawDataProcess.cpp $(INCS) clean
|
||||
g++ -o jungfrauRawDataProcessStrxAldo jungfrauRawDataProcess.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DJFSTRX -DALDO
|
||||
|
||||
jungfrauRawDataProcessStrxOld: jungfrauRawDataProcess.cpp $(INCS) clean
|
||||
g++ -o jungfrauRawDataProcessStrxOld jungfrauRawDataProcess.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DJFSTRXOLD
|
||||
|
||||
jungfrauRawDataProcessStrxOldAldo: jungfrauRawDataProcess.cpp $(INCS) clean
|
||||
g++ -o jungfrauRawDataProcessStrxOldAldo jungfrauRawDataProcess.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DJFSTRXOLD -DALDO
|
||||
|
||||
|
||||
|
||||
jungfrauClusterFinder: jungfrauClusterFinder.cpp $(INCS) clean
|
||||
g++ -o jungfrauClusterFinder jungfrauClusterFinder.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL
|
||||
|
||||
|
||||
jungfrauClusterFinderHighZ: jungfrauClusterFinder.cpp $(INCS) clean
|
||||
g++ -o jungfrauClusterFinderHighZ jungfrauClusterFinder.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DHIGHZ
|
||||
|
||||
|
||||
|
||||
|
||||
jungfrauMakeEta: jungfrauInterpolation.cpp $(INCS) clean
|
||||
g++ -o jungfrauMakeEta jungfrauInterpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DFF
|
||||
|
||||
jungfrauInterpolation: jungfrauInterpolation.cpp $(INCS) clean
|
||||
g++ -o jungfrauInterpolation jungfrauInterpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)
|
||||
|
||||
jungfrauNoInterpolation: jungfrauNoInterpolation.cpp $(INCS) clean
|
||||
g++ -o jungfrauNoInterpolation jungfrauNoInterpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)
|
||||
|
||||
jungfrauPhotonCounter: jungfrauPhotonCounter.cpp $(INCS) clean
|
||||
g++ -o jungfrauPhotonCounter jungfrauPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER
|
||||
|
||||
jungfrauAnalog: jungfrauPhotonCounter.cpp $(INCS) clean
|
||||
g++ -o jungfrauAnalog jungfrauPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DANALOG
|
||||
|
||||
jungfrauPhotonCounterHighZ: jungfrauPhotonCounter.cpp $(INCS) clean
|
||||
g++ -o jungfrauPhotonCounterHighZ jungfrauPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DHIGHZ
|
||||
|
||||
jungfrauAnalogHighZ: jungfrauPhotonCounter.cpp $(INCS) clean
|
||||
g++ -o jungfrauAnalogHighZ jungfrauPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DANALOG -DHIGHZ
|
||||
|
||||
clean:
|
||||
rm -f jungfrauClusterFinder jungfrauMakeEta jungfrauInterpolation jungfrauNoInterpolation jungfrauPhotonCounter jungfrauAnalog
|
||||
|
||||
|
||||
@ -0,0 +1,429 @@
|
||||
// SPDX-License-Identifier: LGPL-3.0-or-other
|
||||
// Copyright (C) 2021 Contributors to the SLS Detector Package
|
||||
//#include "sls/ansi.h"
|
||||
#include <iostream>
|
||||
#undef CORR
|
||||
|
||||
#define C_GHOST 0.0004
|
||||
|
||||
#define CM_ROWS 50
|
||||
|
||||
#define RAWDATA
|
||||
|
||||
#if !defined JFSTRX && !defined JFSTRXOLD && !defined JFSTRXCHIP1 && !defined JFSTRXCHIP6
|
||||
#ifndef MODULE
|
||||
#include "jungfrauHighZSingleChipData.h"
|
||||
#endif
|
||||
#ifdef MODULE
|
||||
#include "jungfrauModuleData.h"
|
||||
#endif
|
||||
#endif
|
||||
|
||||
#ifdef JFSTRX
|
||||
#include "jungfrauLGADStrixelsData.h"
|
||||
#endif
|
||||
#if defined JFSTRXCHIP1 || defined JFSTRXCHIP6
|
||||
#include "jungfrauLGADStrixelsDataSingleChip.h"
|
||||
#endif
|
||||
#ifdef JFSTRXOLD
|
||||
#include "jungfrauStrixelsHalfModuleOldDesign.h"
|
||||
#endif
|
||||
|
||||
#include "multiThreadedCountingDetector.h"
|
||||
#include "singlePhotonDetector.h"
|
||||
|
||||
#include <fstream>
|
||||
#include <map>
|
||||
#include <stdio.h>
|
||||
#include <sys/stat.h>
|
||||
|
||||
#include <ctime>
|
||||
using namespace std;
|
||||
|
||||
int main(int argc, char *argv[]) {
|
||||
|
||||
if (argc < 5) {
|
||||
cout << "Usage is " << argv[0]
|
||||
<< "indir outdir fname(no extension) fextension [runmin] [runmax] [pedfile (raw or tiff)] [threshold] "
|
||||
"[nframes] [xmin xmax ymin ymax] [gainmap]"
|
||||
<< endl;
|
||||
cout << "threshold <0 means analog; threshold=0 means cluster finder; "
|
||||
"threshold>0 means photon counting"
|
||||
<< endl;
|
||||
cout << "nframes <0 means sum everything; nframes=0 means one file per "
|
||||
"run; nframes>0 means one file every nframes"
|
||||
<< endl;
|
||||
return 1;
|
||||
}
|
||||
|
||||
int fifosize = 1000;
|
||||
int nthreads = 10;
|
||||
int csize = 3; //3
|
||||
int nsigma = 5;
|
||||
int nped = 10000;
|
||||
|
||||
int cf = 0;
|
||||
|
||||
|
||||
#if !defined JFSTRX && !defined JFSTRXOLD && !defined JFSTRXCHIP1 && !defined JFSTRXCHIP6
|
||||
#ifndef MODULE
|
||||
jungfrauHighZSingleChipData *decoder = new jungfrauHighZSingleChipData();
|
||||
int nx = 256, ny = 256;
|
||||
#endif
|
||||
#ifdef MODULE
|
||||
jungfrauModuleData *decoder = new jungfrauModuleData();
|
||||
int nx = 1024, ny = 512;
|
||||
#endif
|
||||
#endif
|
||||
|
||||
#ifdef JFSTRX
|
||||
cout << "Jungfrau strixel full module readout" << endl;
|
||||
jungfrauLGADStrixelsData *decoder = new jungfrauLGADStrixelsData();
|
||||
int nx = 1024/5, ny = 512*5;
|
||||
#endif
|
||||
#ifdef JFSTRXCHIP1
|
||||
std::cout << "Jungfrau strixel LGAD single chip 1" << std::endl;
|
||||
jungfrauLGADStrixelsDataSingleChip *decoder = new jungfrauLGADStrixelsDataSingleChip(1);
|
||||
int nx = 256/3, ny = 256*5;
|
||||
#endif
|
||||
#ifdef JFSTRXCHIP6
|
||||
std::cout << "Jungfrau strixel LGAD single chip 6" << std::endl;
|
||||
jungfrauLGADStrixelsDataSingleChip *decoder = new jungfrauLGADStrixelsDataSingleChip(6);
|
||||
int nx = 256/3, ny = 256*5;
|
||||
#endif
|
||||
#ifdef JFSTRXOLD
|
||||
std::cout << "Jungfrau strixels old design" << std::endl;
|
||||
jungfrauStrixelsHalfModuleOldDesign *decoder = new jungfrauStrixelsHalfModuleOldDesign();
|
||||
int nx = 1024*3, ny = 512/3;
|
||||
#endif
|
||||
|
||||
|
||||
decoder->getDetectorSize(nx, ny);
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
cout << "Detector size is " << nx << " " << ny << endl;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
double *gainmap = NULL;
|
||||
//float *gm;
|
||||
|
||||
int ff, np;
|
||||
// cout << " data size is " << dsize;
|
||||
|
||||
ifstream filebin;
|
||||
char *indir = argv[1];
|
||||
char *outdir = argv[2];
|
||||
char *fformat = argv[3];
|
||||
char *fext = argv[4];
|
||||
int runmin = 0;
|
||||
|
||||
// cout << "argc is " << argc << endl;
|
||||
if (argc >= 6) {
|
||||
runmin = atoi(argv[5]);
|
||||
}
|
||||
|
||||
int runmax = runmin;
|
||||
|
||||
if (argc >= 7) {
|
||||
runmax = atoi(argv[6]);
|
||||
}
|
||||
|
||||
char *pedfile = NULL;
|
||||
if (argc >= 8) {
|
||||
pedfile = argv[7];
|
||||
}
|
||||
double thr = 0;
|
||||
double thr1 = 1;
|
||||
|
||||
if (argc >= 9) {
|
||||
thr = atof(argv[8]);
|
||||
}
|
||||
|
||||
int nframes = 0;
|
||||
|
||||
if (argc >= 10) {
|
||||
nframes = atoi(argv[9]);
|
||||
}
|
||||
|
||||
int xmin = 0, xmax = nx, ymin = 0, ymax = ny;
|
||||
if (argc >= 14) {
|
||||
xmin = atoi(argv[10]);
|
||||
xmax = atoi(argv[11]);
|
||||
ymin = atoi(argv[12]);
|
||||
ymax = atoi(argv[13]);
|
||||
}
|
||||
|
||||
char *gainfname = NULL;
|
||||
if (argc > 14) {
|
||||
gainfname = argv[14];
|
||||
cout << "Gain map file name is: " << gainfname << endl;
|
||||
}
|
||||
|
||||
char ffname[10000];
|
||||
char fname[10000];
|
||||
char imgfname[10000];
|
||||
char cfname[10000];
|
||||
|
||||
std::time_t end_time;
|
||||
|
||||
FILE *of = NULL;
|
||||
cout << "input directory is " << indir << endl;
|
||||
cout << "output directory is " << outdir << endl;
|
||||
cout << "input file is " << fformat << endl;
|
||||
cout << "runmin is " << runmin << endl;
|
||||
cout << "runmax is " << runmax << endl;
|
||||
if (pedfile)
|
||||
cout << "pedestal file is " << pedfile << endl;
|
||||
if (thr > 0)
|
||||
cout << "threshold is " << thr << endl;
|
||||
cout << "Nframes is " << nframes << endl;
|
||||
|
||||
uint32_t nnx, nny;
|
||||
|
||||
singlePhotonDetector *filter = new singlePhotonDetector(
|
||||
decoder, 3, nsigma, 1, NULL, nped, 200, -1, -1, gainmap, NULL);
|
||||
|
||||
if (gainfname) {
|
||||
|
||||
if (filter->readGainMap(gainfname))
|
||||
cout << "using gain map " << gainfname << endl;
|
||||
else
|
||||
cout << "Could not open gain map " << gainfname << endl;
|
||||
} else
|
||||
thr = 0.15 * thr;
|
||||
filter->newDataSet();
|
||||
//int dsize = decoder->getDataSize();
|
||||
|
||||
if (thr > 0) {
|
||||
cout << "threshold is " << thr << endl;
|
||||
filter->setThreshold(thr);
|
||||
cf = 0;
|
||||
|
||||
} else
|
||||
cf = 1;
|
||||
|
||||
filter->setROI(xmin, xmax, ymin, ymax);
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
|
||||
char *buff;
|
||||
|
||||
// multiThreadedAnalogDetector *mt=new
|
||||
// multiThreadedAnalogDetector(filter,nthreads,fifosize);
|
||||
multiThreadedCountingDetector *mt =
|
||||
new multiThreadedCountingDetector(filter, nthreads, fifosize);
|
||||
mt->setClusterSize(csize,csize);
|
||||
#ifndef ANALOG
|
||||
mt->setDetectorMode(ePhotonCounting);
|
||||
cout << "Counting!" << endl;
|
||||
if (thr > 0) {
|
||||
cf = 0;
|
||||
}
|
||||
#endif
|
||||
//{
|
||||
#ifdef ANALOG
|
||||
mt->setDetectorMode(eAnalog);
|
||||
cout << "Analog!" << endl;
|
||||
cf = 0;
|
||||
// thr1=thr;
|
||||
#endif
|
||||
// }
|
||||
|
||||
mt->StartThreads();
|
||||
mt->popFree(buff);
|
||||
|
||||
// cout << "mt " << endl;
|
||||
|
||||
int ifr = 0;
|
||||
|
||||
char froot[1000];
|
||||
double *ped=new double[nx * ny];//, *ped1;
|
||||
|
||||
int pos,pos1;
|
||||
|
||||
if (pedfile) {
|
||||
|
||||
if (string(pedfile).find(".dat") != std::string::npos) {
|
||||
pos1=string(pedfile).rfind("/");
|
||||
strcpy(froot,pedfile+pos1);
|
||||
pos=string(froot).find(".dat");
|
||||
froot[pos]='\0';
|
||||
}
|
||||
|
||||
cout << "PEDESTAL " << endl;
|
||||
// sprintf(imgfname, "%s/pedestals.tiff", outdir);
|
||||
|
||||
if (string(pedfile).find(".tif") == std::string::npos) {
|
||||
sprintf(fname, "%s", pedfile);
|
||||
cout << fname << endl;
|
||||
std::time(&end_time);
|
||||
//cout << "aaa" << std::ctime(&end_time) << endl;
|
||||
|
||||
mt->setFrameMode(ePedestal);
|
||||
// sprintf(fn,fformat,irun);
|
||||
filebin.open((const char *)(fname), ios::in | ios::binary);
|
||||
// //open file
|
||||
if (filebin.is_open()) {
|
||||
ff = -1;
|
||||
while (decoder->readNextFrame(filebin, ff, np, buff)) {
|
||||
// if (np == 40) {
|
||||
if ((ifr+1) % 100 == 0) {
|
||||
cout << " ****" << decoder->getValue(buff,20,20);// << endl;
|
||||
}
|
||||
mt->pushData(buff);
|
||||
mt->nextThread();
|
||||
mt->popFree(buff);
|
||||
ifr++;
|
||||
if (ifr % 100 == 0) {
|
||||
cout << " ****" << ifr << " " << ff << " " << np << endl;
|
||||
} //else
|
||||
//cout << ifr << " " << ff << " " << np << endl;
|
||||
if (ifr>=1000)
|
||||
break;
|
||||
ff = -1;
|
||||
}
|
||||
filebin.close();
|
||||
while (mt->isBusy()) {
|
||||
;
|
||||
}
|
||||
|
||||
sprintf(imgfname, "%s/%s_ped.tiff", outdir, froot);
|
||||
mt->writePedestal(imgfname);
|
||||
sprintf(imgfname, "%s/%s_rms.tiff", outdir, froot);
|
||||
mt->writePedestalRMS(imgfname);
|
||||
|
||||
} else
|
||||
cout << "Could not open pedestal file " << fname
|
||||
<< " for reading " << endl;
|
||||
} else {
|
||||
float *pp = ReadFromTiff(pedfile, nny, nnx);
|
||||
if (pp && (int)nnx == nx && (int)nny == ny) {
|
||||
for (int i = 0; i < nx * ny; i++) {
|
||||
ped[i] = pp[i];
|
||||
}
|
||||
delete[] pp;
|
||||
mt->setPedestal(ped);
|
||||
cout << "Pedestal set from tiff file " << pedfile << endl;
|
||||
} else {
|
||||
cout << "Could not open pedestal tiff file " << pedfile
|
||||
<< " for reading " << endl;
|
||||
}
|
||||
}
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
}
|
||||
|
||||
ifr = 0;
|
||||
int ifile = 0;
|
||||
|
||||
mt->setFrameMode(eFrame);
|
||||
|
||||
for (int irun = runmin; irun <= runmax; irun++) {
|
||||
cout << "DATA ";
|
||||
// sprintf(fn,fformat,irun);
|
||||
sprintf(ffname, "%s/%s.%s", indir, fformat, fext);
|
||||
sprintf(fname, (const char*)ffname, irun);
|
||||
sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
sprintf(imgfname, (const char*)ffname, irun);
|
||||
sprintf(ffname, "%s/%s.clust", outdir, fformat);
|
||||
sprintf(cfname, (const char*)ffname, irun);
|
||||
cout << fname << " ";
|
||||
cout << imgfname << endl;
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
// cout << fname << " " << outfname << " " << imgfname << endl;
|
||||
filebin.open((const char *)(fname), ios::in | ios::binary);
|
||||
// //open file
|
||||
ifile = 0;
|
||||
if (filebin.is_open()) {
|
||||
if (thr <= 0 && cf != 0) { // cluster finder
|
||||
if (of == NULL) {
|
||||
of = fopen(cfname, "w");
|
||||
if (of) {
|
||||
mt->setFilePointer(of);
|
||||
cout << "file pointer set " << endl;
|
||||
} else {
|
||||
cout << "Could not open " << cfname << " for writing "
|
||||
<< endl;
|
||||
mt->setFilePointer(NULL);
|
||||
return 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
// //while read frame
|
||||
ff = -1;
|
||||
ifr = 0;
|
||||
while (decoder->readNextFrame(filebin, ff, np, buff)) {
|
||||
// if (np == 40) {
|
||||
// //push
|
||||
|
||||
if ((ifr+1) % 100 == 0) {
|
||||
cout << " ****" << decoder->getValue(buff,20,20);// << endl;
|
||||
}
|
||||
mt->pushData(buff);
|
||||
// // //pop
|
||||
mt->nextThread();
|
||||
mt->popFree(buff);
|
||||
|
||||
ifr++;
|
||||
if (ifr % 100 == 0)
|
||||
cout << " " << ifr << " " << ff << endl;
|
||||
if (nframes > 0) {
|
||||
if (ifr % nframes == 0) {
|
||||
sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat,
|
||||
ifile);
|
||||
sprintf(imgfname, (const char*)ffname, irun);
|
||||
mt->writeImage(imgfname, thr1);
|
||||
mt->clearImage();
|
||||
ifile++;
|
||||
}
|
||||
}
|
||||
// } else
|
||||
// cout << ifr << " " << ff << " " << np << endl;
|
||||
ff = -1;
|
||||
}
|
||||
cout << "--" << endl;
|
||||
filebin.close();
|
||||
while (mt->isBusy()) {
|
||||
;
|
||||
}
|
||||
if (nframes >= 0) {
|
||||
if (nframes > 0) {
|
||||
sprintf(ffname, "%s/%s_f%05d.tiff", outdir, fformat, ifile);
|
||||
sprintf(imgfname, (const char*)ffname, irun);
|
||||
} else {
|
||||
sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
sprintf(imgfname, (const char*)ffname, irun);
|
||||
}
|
||||
cout << "Writing tiff to " << imgfname << " " << thr1 << endl;
|
||||
mt->writeImage(imgfname, thr1);
|
||||
mt->clearImage();
|
||||
if (of) {
|
||||
fclose(of);
|
||||
of = NULL;
|
||||
mt->setFilePointer(NULL);
|
||||
}
|
||||
}
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
} else
|
||||
cout << "Could not open " << fname << " for reading " << endl;
|
||||
}
|
||||
if (nframes < 0) {
|
||||
sprintf(ffname, "%s/%s.tiff", outdir, fformat);
|
||||
strcpy(imgfname, ffname);
|
||||
cout << "Writing tiff to " << imgfname << " " << thr1 << endl;
|
||||
mt->writeImage(imgfname, thr1);
|
||||
}
|
||||
|
||||
return 0;
|
||||
}
|
||||
Loading…
x
Reference in New Issue
Block a user