mirror of
https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2025-06-11 12:27:14 +02:00
works so far, no gui yet
This commit is contained in:
Dhanya Maliakal
@ -1,18 +1,17 @@
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#ifdef HDF5C
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#pragma once
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/************************************************
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* @file HDF5File.h
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* @short sets/gets properties for the HDF5 file,
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* creates/closes the file and writes data to it
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***********************************************/
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//#define HDF5C
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//#ifdef HDF5C
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#ifndef HDF5_FILE_H
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#define HDF5_FILE_H
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/**
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*@short sets/gets properties for the HDF5 file, creates/closes the file and writes data to it
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*/
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#include "File.h"
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#include "HDF5FileStatic.h"
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#include "H5Cpp.h"
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#ifndef H5_NO_NAMESPACE
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using namespace H5;
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@ -20,7 +19,7 @@
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#include <string>
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class HDF5File : private virtual slsReceiverDefs, public File {
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class HDF5File : private virtual slsReceiverDefs, public File, public HDF5FileStatic {
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public:
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/**
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@ -33,6 +32,7 @@ class HDF5File : private virtual slsReceiverDefs, public File {
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* @param findex pointer to file index
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* @param frindexenable pointer to frame index enable
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* @param owenable pointer to over write enable
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* @param maxf max frames per file
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* @param dindex pointer to detector index
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* @param nunits pointer to number of theads/ units per detector
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* @param nf pointer to number of frames
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@ -41,8 +41,8 @@ class HDF5File : private virtual slsReceiverDefs, public File {
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* @param ny number of pixels in y direction
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*/
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HDF5File(int ind, int* nd, char* fname, char* fpath, uint64_t* findex,
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bool* frindexenable, bool* owenable, int* dindex, int* nunits, uint64_t* nf, uint32_t* dr,
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int nx, int ny);
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bool* frindexenable, bool* owenable, uint32_t maxf, int* dindex, int* nunits, uint64_t* nf, uint32_t* dr,
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uint32_t nx, uint32_t ny);
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/**
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* Destructor
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@ -100,169 +100,13 @@ class HDF5File : private virtual slsReceiverDefs, public File {
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int CreateMasterFile(bool en, uint32_t size,
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uint32_t nx, uint32_t ny, uint64_t at, uint64_t ap);
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//*** static functions ***
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/**
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* Create File Name in format fpath/fnameprefix_fx_dy_z.raw,
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* where x is fnum, y is (dindex * numunits + unitindex) and z is findex
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* @param fpath file path
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* @param fnameprefix file name prefix (includes scan and position variables)
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* @param findex file index
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* @param frindexenable frame index enable
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* @param fnum frame number index
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* @param dindex readout index
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* @param numunits number of units per readout. eg. eiger has 2 udp units per readout
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* @param unitindex unit index
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* @returns complete file name created
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*/
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static std::string CreateFileName(char* fpath, char* fnameprefix, uint64_t findex, bool frindexenable,
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uint64_t fnum = 0, int dindex = -1, int numunits = 1, int unitindex = 0);
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/**
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* Create master file name
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* @param fpath file path
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* @param fnameprefix file name prefix (includes scan and position variables)
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* @param findex file index
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* @returns master file name
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*/
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static std::string CreateMasterFileName(char* fpath, char* fnameprefix, uint64_t findex);
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/**
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* Create virtual file name
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* @param fpath file path
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* @param fnameprefix file name prefix (includes scan and position variables)
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* @param fnum current frame number
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* @param findex file index
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* @param frindexenable frame index enable
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* @param fnum frame number index
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* @returns virtual file name
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*/
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static std::string CreateVirtualFileName(char* fpath, char* fnameprefix, uint64_t findex, bool frindexenable,
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uint64_t fnum);
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/**
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* Close File
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* @param ind index for debugging
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* @param fd file pointer
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* @param dp dataspace pointer
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* @param ds dataset pointer
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*/
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static void CloseDataFile(int ind, H5File*& fd, DataSpace*& dp, DataSet*& ds);
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/*
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* Close master file
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*/
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void CloseMasterDataFile();
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/*
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* Close virtual file
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*/
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void CloseVirtualDataFile();
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/**
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* Write data to file
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* @param ind object index for debugging
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* @param buf buffer to write from
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* @param numImages number of images
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* @param nx number of pixels in x direction
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* @param ny number of pixels in y direction
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* @param fnum current image number
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* @param dspace dataspace pointer
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* @param dset dataset pointer
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* @param dtype datatype
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* @returns OK or FAIL
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*/
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static int WriteDataFile(int ind, char* buf, uint64_t numImages, int nx, int ny, uint64_t fnum,
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DataSpace* dspace, DataSet* dset, DataType dtype);
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/**
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* Create master file
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* @param fname master file name
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* @param owenable overwrite enable
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* @param dr dynamic range
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* @param tenE ten giga enable
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* @param size image size
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* @param nx number of pixels in x direction
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* @param ny number of pixels in y direction
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* @param nf number of images
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* @param acquisitionTime acquisition time
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* @param acquisitionPeriod acquisition period
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* @returns OK or FAIL
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*/
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int CreateMasterDataFile(std::string fname, bool owenable,
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uint32_t dr, bool tenE, uint32_t size, uint32_t nx, uint32_t ny, uint64_t nf,
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uint64_t acquisitionTime, uint64_t acquisitionPeriod);
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/**
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* Create Virtual File
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* @param fnum frame number
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*/
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int CreateVirtualFile(uint64_t fnum);
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/**
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* Create File
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* @param ind object index for debugging
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* @param owenable overwrite enable
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* @param numf number of images
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* @param fname complete file name
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* @param frindexenable frame index enable
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* @param fnum current image number
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* @param nx number of pixels in x dir
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* @param ny number of pixels in y dir
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* @param dtype data type
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* @param fd file pointer
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* @param dspace dataspace pointer
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* @param dset dataset pointer
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* @returns OK or FAIL
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*/
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static int CreateDataFile(int ind, bool owenable, uint64_t numf, std::string fname, bool frindexenable, uint64_t fnum, int nx, int ny,
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DataType dtype, H5File*& fd, DataSpace*& dspace, DataSet*& dset);
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/**
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* Create virtual file
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* @param virtualfname virtual file name
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* @param virtualDatasetname virtual dataset name
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* @param srcDatasetname source dataset name
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* @param numFiles number of files
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* @param fileNames array of file names
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* @param owenable overwrite enable
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* @param fnum current frame number
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* @param dtype datatype
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* @param srcNDimx source number of objects in x dimension (Number of images)
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* @param srcNDimy source number of objects in y dimension (Number of pixels in y dir)
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* @param srcNDimz source number of objects in z dimension (Number of pixels in x dir)
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* @param dstNDimx destination number of objects in x dimension (Number of images)
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* @param dstNDimy destination number of objects in y dimension (Number of pixels in y dir)
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* @param dstNDimz destination number of objects in z dimension (Number of pixels in x dir)
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* @returns OK or FAIL
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*/
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static int CreateVirtualDataFile(std::string virtualfname, std::string virtualDatasetname, std::string srcDatasetname,
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int numFiles, std::string fileNames[], bool owenable, uint64_t fnum, hid_t dtype,
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int srcNDimx, int srcNDimy, int srcNDimz, int dstNDimx, int dstNDimy, int dstNDimz);
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/**
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* Copy file to another file (mainly to view virutal files in hdfviewer)
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* @param owenable overwrite enable
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* @param oldFileName file name including path of file to copy
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* @param oldDatasetName dataset name to copy
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* @param newFileName file name including path of file to copy to
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* @param newDatasetName dataset name to copy to
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* @param nDimx Number of objects in x dimension
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* @param nDimy Number of objects in y dimension
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* @param nDimz Number of objects in z dimension
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* @param dataType data type
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* @returns OK or FAIL
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*/
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template <typename T>
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static int CopyVirtualFile(bool owenable, std::string oldFileName, std::string oldDatasetName,
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std::string newFileName, std::string newDatasetName, int nDimx, int nDimy, int nDimz, T datatype);
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void CreateFinalFile();
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private:
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/**
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@ -301,12 +145,13 @@ class HDF5File : private virtual slsReceiverDefs, public File {
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DataType datatype;
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/** Number of pixels in x direction */
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int nPixelsX;
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uint32_t nPixelsX;
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/** Number of pixels in y direction */
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int nPixelsY;
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uint32_t nPixelsY;
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/** Number of frames in file */
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uint32_t numFramesInFile;
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};
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//#endif
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#endif
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