mirror of
https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2025-06-20 16:48:01 +02:00
program runs (fixed detector size in jungfrauLGADStrixelsDataQuadH5.h)
This commit is contained in:
@ -109,23 +109,25 @@ int main(int argc, char *argv[]) {
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{ //Safety scope for ifstream
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ifstream inputs( txtfilename, std::ios::in );
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if (inputs.is_open()) {
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std::cout << "Reading imput filenames from txt-file ..." << std::endl;
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std::string line{};
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while (!inputs.eof()) {
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std::getline(inputs, line);
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filenames.emplace_back(line);
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std::cout << line << " line.max_size() " << line.max_size() << " filenames.capacity() " << filenames.capacity() << '\n';
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}
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inputs.close();
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std::cout << "---- Reached end of txt-file. ----" << std::endl;
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std::cout << "Reading imput filenames from txt-file ..." << std::endl;
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std::string line{};
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while (!inputs.eof()) {
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std::getline(inputs, line);
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if(line.find(".h5") != std::string::npos) {
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filenames.emplace_back(line);
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std::cout << line << std::endl; //" line.max_size() " << line.max_size() << " filenames.capacity() " << filenames.capacity() << '\n';
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}
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}
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inputs.close();
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std::cout << "---- Reached end of txt-file. ----" << std::endl;
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} else
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std::cout << "Could not open " << txtfilename << std::endl;
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std::cout << "Could not open " << txtfilename << std::endl;
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if (filenames.size()>0) {
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std::cout << filenames.size() << " filenames found in " << txtfilename << std::endl;
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std::cout << "The files will be processed in the same order as found in the txt-file." << std::endl;
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std::cout << filenames.size() << " filenames found in " << txtfilename << std::endl;
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std::cout << "The files will be processed in the same order as found in the txt-file." << std::endl;
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} else {
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std::cout << "No files found in txt-file!" << std::endl;
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return 1;
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std::cout << "No files found in txt-file!" << std::endl;
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return 1;
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}
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}
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@ -133,8 +135,8 @@ int main(int argc, char *argv[]) {
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// Define decoder
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std::cout << "Jungfrau strixel quad h5" << std::endl;
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//jungfrauLGADStrixelsDataQuadH5* decoder = new jungfrauLGADStrixelsDataQuadH5();
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auto decoder = std::make_unique<jungfrauLGADStrixelsDataQuadH5>();
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jungfrauLGADStrixelsDataQuadH5* decoder = new jungfrauLGADStrixelsDataQuadH5();
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//auto decoder = std::make_unique<jungfrauLGADStrixelsDataQuadH5>();
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int nx = 1024 / 3, ny = 512 * 3;
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//Cluster finder ROI
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@ -162,9 +164,9 @@ int main(int argc, char *argv[]) {
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uint32_t nnx, nny;
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//singlePhotonDetector* filter =
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// new singlePhotonDetector(decoder.get(), 3, nsigma, 1, NULL, nped, 200, -1, -1, NULL, NULL);
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auto filter = std::make_unique<singlePhotonDetector>(decoder.get(), 3, nsigma, 1, nullptr, nped, 200, -1, -1, nullptr, nullptr);
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singlePhotonDetector* filter =
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new singlePhotonDetector(decoder, 3, nsigma, 1, NULL, nped, 200, -1, -1, NULL, NULL);
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//auto filter = std::make_unique<singlePhotonDetector>(decoder.get(), 3, nsigma, 1, nullptr, nped, 200, -1, -1, nullptr, nullptr);
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thr = 0.15 * thr;
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filter->newDataSet();
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@ -184,9 +186,9 @@ int main(int argc, char *argv[]) {
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char* buff;
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//multiThreadedCountingDetector* mt =
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// new multiThreadedCountingDetector(filter, nthreads, fifosize);
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auto mt = std::make_unique<multiThreadedCountingDetector>(filter.get(), nthreads, fifosize);
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multiThreadedCountingDetector* mt =
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new multiThreadedCountingDetector(filter, nthreads, fifosize);
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//auto mt = std::make_unique<multiThreadedCountingDetector>(filter.get(), nthreads, fifosize);
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mt->setClusterSize(csize, csize);
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#ifndef ANALOG
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@ -219,73 +221,73 @@ int main(int argc, char *argv[]) {
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std::cout << "PEDESTAL " << std::endl;
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if (pedfilename.find(".tif") == std::string::npos) { //not a tiff file
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std::string const fname(pedfilename);
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std::cout << fname << std::endl;
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std::time(&end_time);
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std::cout << "aaa " << std::ctime(&end_time) << std::endl;
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std::string const fname(pedfilename);
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std::cout << fname << std::endl;
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std::time(&end_time);
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std::cout << "aaa " << std::ctime(&end_time) << std::endl;
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mt->setFrameMode(ePedestal);
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mt->setFrameMode(ePedestal);
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//HDF5File pedefile;
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auto pedefile = std::make_unique<HDF5File>();
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// //open file
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if ( pedefile->OpenResources(fname.c_str(),validate_rank) ) {
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std::cout << "bbbb " << std::ctime(&end_time) << std::endl;
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//HDF5File pedefile;
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auto pedefile = std::make_unique<HDF5File>();
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// //open file
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if ( pedefile->OpenResources(fname.c_str(),validate_rank) ) {
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std::cout << "bbbb " << std::ctime(&end_time) << std::endl;
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framenumber = -1;
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framenumber = -1;
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while ( decoder->readNextFrame(*pedefile, framenumber, iframe, buff) ) {
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while ( decoder->readNextFrame(*pedefile, framenumber, iframe, buff) ) {
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if ((ifr + 1) % 100 == 0) {
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std::cout
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<< " ****"
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<< decoder->getValue(buff, 20, 20); // << std::endl;
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}
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mt->pushData(buff);
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mt->nextThread();
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mt->popFree(buff);
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++ifr;
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if (ifr % 100 == 0) {
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std::cout << " ****" << ifr << " " << framenumber << " " << iframe
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<< std::endl;
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} // else
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if ((ifr + 1) % 100 == 0) {
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std::cout
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<< " ****"
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<< decoder->getValue(buff, 20, 20); // << std::endl;
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}
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mt->pushData(buff);
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mt->nextThread();
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mt->popFree(buff);
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++ifr;
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if (ifr % 100 == 0) {
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std::cout << " ****" << ifr << " " << framenumber << " " << iframe
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<< std::endl;
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} // else
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if (ifr >= 1000)
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break;
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framenumber = -1;
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}
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if (ifr >= 1000)
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break;
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framenumber = -1;
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}
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pedefile->CloseResources();
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while (mt->isBusy()) {
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;
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}
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pedefile->CloseResources();
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while (mt->isBusy()) {
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;
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}
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std::cout << "froot " << froot << std::endl;
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auto imgfname = createFileName( outdir, froot, "ped", "tiff");
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mt->writePedestal(imgfname.c_str());
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imgfname = createFileName( outdir, froot, "rms", "tiff");
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mt->writePedestalRMS(imgfname.c_str());
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std::cout << "froot " << froot << std::endl;
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auto imgfname = createFileName( outdir, froot, "ped", "tiff");
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mt->writePedestal(imgfname.c_str());
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imgfname = createFileName( outdir, froot, "rms", "tiff");
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mt->writePedestalRMS(imgfname.c_str());
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} else
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std::cout << "Could not open pedestal file " << fname
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<< " for reading " << std::endl;
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} else
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std::cout << "Could not open pedestal file " << fname
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<< " for reading " << std::endl;
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} else { //is a tiff file
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std::vector<double> ped(nx * ny);
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float* pp = ReadFromTiff(pedfilename.c_str(), nny, nnx);
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if (pp && (int)nnx == nx && (int)nny == ny) {
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for (int i = 0; i < nx * ny; i++) {
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ped[i] = pp[i];
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}
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delete[] pp;
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mt->setPedestal(ped.data());
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std::cout << "Pedestal set from tiff file " << pedfilename
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<< std::endl;
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} else {
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std::cout << "Could not open pedestal tiff file " << pedfilename
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<< " for reading " << std::endl;
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}
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std::vector<double> ped(nx * ny);
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float* pp = ReadFromTiff(pedfilename.c_str(), nny, nnx);
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if (pp && (int)nnx == nx && (int)nny == ny) {
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for (int i = 0; i < nx * ny; i++) {
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ped[i] = pp[i];
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}
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delete[] pp;
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mt->setPedestal(ped.data());
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std::cout << "Pedestal set from tiff file " << pedfilename
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<< std::endl;
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} else {
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std::cout << "Could not open pedestal tiff file " << pedfilename
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<< " for reading " << std::endl;
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}
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}
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std::time(&end_time);
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std::cout << std::ctime(&end_time) << std::endl;
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@ -315,88 +317,88 @@ int main(int argc, char *argv[]) {
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// //open file
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ioutfile = 0;
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if ( fileh5->OpenResources(filenames[ifile].c_str(), validate_rank) ) {
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if (thr <= 0 && cf != 0) { // cluster finder
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if (of == nullptr) {
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of = fopen(cfname.c_str(), "w");
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if (of) {
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if (mt) {
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mt->setFilePointer(of);
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std::cout << "file pointer set " << std::endl;
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} else {
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std::cerr << "Error: mt is null." << std::endl;
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return 1;
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if (thr <= 0 && cf != 0) { // cluster finder
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if (of == nullptr) {
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of = fopen(cfname.c_str(), "w");
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if (of) {
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if (mt) {
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mt->setFilePointer(of);
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std::cout << "file pointer set " << std::endl;
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} else {
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std::cerr << "Error: mt is null." << std::endl;
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return 1;
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}
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//mt->setFilePointer(of);
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//std::cout << "file pointer set " << std::endl;
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std::cout << "Here! " << framenumber << " ";
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} else {
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std::cout << "Could not open " << cfname
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<< " for writing " << std::endl;
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mt->setFilePointer(nullptr);
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return 1;
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}
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}
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}
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//mt->setFilePointer(of);
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//std::cout << "file pointer set " << std::endl;
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std::cout << "Here! " << framenumber << " ";
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} else {
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std::cout << "Could not open " << cfname
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<< " for writing " << std::endl;
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mt->setFilePointer(nullptr);
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return 1;
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}
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}
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}
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// //while read frame
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framenumber = -1;
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iframe = 0;
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ifr = 0;
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//std::cout << "Here! " << framenumber << " ";
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while ( decoder->readNextFrame(*fileh5, framenumber, iframe, buff) ) {
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//std::cout << "Here! " << framenumber << " ";
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// //push
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if ((ifr + 1) % 100 == 0) {
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std::cout << " ****"
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<< decoder->getValue(buff, 20, 20); // << std::endl;
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}
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mt->pushData(buff);
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framenumber = -1;
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iframe = 0;
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ifr = 0;
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//std::cout << "Here! " << framenumber << " ";
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while ( decoder->readNextFrame(*fileh5, framenumber, iframe, buff) ) {
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//std::cout << "Here! " << framenumber << " ";
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// //push
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if ((ifr + 1) % 1000 == 0) {
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std::cout << " ****"
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<< decoder->getValue(buff, 20, 20); // << std::endl;
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}
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mt->pushData(buff);
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// // //pop
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mt->nextThread();
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mt->popFree(buff);
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// // //pop
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mt->nextThread();
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mt->popFree(buff);
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++ifr;
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if (ifr % 100 == 0)
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std::cout << " " << ifr << " " << framenumber << std::endl;
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if (nframes > 0) {
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if (ifr % nframes == 0) {
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imgfname = createFileName( outdir, fprefix, fsuffix, "tiff", ioutfile );
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mt->writeImage(imgfname.c_str(), thr1);
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mt->clearImage();
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++ioutfile;
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}
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}
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++ifr;
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if (ifr % 1000 == 0)
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std::cout << " " << ifr << " " << framenumber << std::endl;
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if (nframes > 0) {
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if (ifr % nframes == 0) {
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imgfname = createFileName( outdir, fprefix, fsuffix, "tiff", ioutfile );
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mt->writeImage(imgfname.c_str(), thr1);
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mt->clearImage();
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++ioutfile;
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}
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}
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framenumber = -1;
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}
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std::cout << "aa --" << std::endl;
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fileh5->CloseResources();
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framenumber = -1;
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}
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std::cout << "aa --" << std::endl;
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fileh5->CloseResources();
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std::cout << "bb --" << std::endl;
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while (mt->isBusy()) {
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;
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}
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std::cout << "bb --" << std::endl;
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while (mt->isBusy()) {
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;
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}
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std::cout << "cc --" << std::endl;
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if (nframes >= 0) {
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if (nframes > 0)
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imgfname = createFileName( outdir, fprefix, fsuffix, "tiff", ioutfile );
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std::cout << "Writing tiff to " << imgfname << " " << thr1
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<< std::endl;
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mt->writeImage(imgfname.c_str(), thr1);
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mt->clearImage();
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if (of) {
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fclose(of);
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of = nullptr;
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mt->setFilePointer(nullptr);
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}
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}
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std::time(&end_time);
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std::cout << std::ctime(&end_time) << std::endl;
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std::cout << "cc --" << std::endl;
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if (nframes >= 0) {
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if (nframes > 0)
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imgfname = createFileName( outdir, fprefix, fsuffix, "tiff", ioutfile );
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std::cout << "Writing tiff to " << imgfname << " " << thr1
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<< std::endl;
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mt->writeImage(imgfname.c_str(), thr1);
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mt->clearImage();
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if (of) {
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fclose(of);
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of = nullptr;
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mt->setFilePointer(nullptr);
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}
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}
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std::time(&end_time);
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std::cout << std::ctime(&end_time) << std::endl;
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} else
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std::cout << "Could not open " << filenames[ifile] << " for reading "
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<< std::endl;
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std::cout << "Could not open " << filenames[ifile] << " for reading "
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<< std::endl;
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}
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if (nframes < 0) {
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std::string fprefix( getRootString(filenames[0]) ); //This might by a non-ideal name choice for that file
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@ -405,8 +407,11 @@ int main(int argc, char *argv[]) {
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mt->writeImage(imgfname.c_str(), thr1);
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}
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//delete decoder
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//delete filter;
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//delete mt;
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delete mt;
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delete filter;
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delete decoder;
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delete buff;
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return 0;
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Block a user