mirror of
https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2025-06-12 12:57:13 +02:00
fixed slsDeetctorcalibration - including interpolation for rectangular pixels
This commit is contained in:
@ -7,7 +7,12 @@
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#include "sls_detector_defs.h"
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#include "ZmqSocket.h"
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#ifndef RECT
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#include "moench03T1ZmqDataNew.h"
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#endif
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#ifdef RECT
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#include "moench03T1ZmqDataNewRect.h"
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#endif
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#include "moench03GhostSummation.h"
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#include "moench03CommonMode.h"
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#include <vector>
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@ -49,10 +54,11 @@ int main(int argc, char *argv[]) {
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*/
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FILE *of=NULL;
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int fifosize=5000;
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int etabins=1000;//nsubpix*2*100;
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int etabins=1000, etabinsy=1000;//nsubpix*2*100;
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double etamin=-1, etamax=2;
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int nSubPixels=2;
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int nSubPixelsX=2;
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// int emin, emax;
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int nSubPixelsY=2;
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// help
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if (argc < 3 ) {
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cprintf(RED, "Help: ./trial [receive socket ip] [receive starting port number] [send_socket ip] [send starting port number] [nthreads] [nsubpix] [gainmap] [etafile]\n");
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@ -75,13 +81,7 @@ int main(int argc, char *argv[]) {
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// high_resolution_clock::time_point t2 ;
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time_t begin,end,finished;
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int rms=0;
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int nped=1000, nped0=100;
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#ifdef PTC
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nped=10000;
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nped0=10000;
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#endif
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if (argc > 4) {
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@ -101,10 +101,14 @@ int main(int argc, char *argv[]) {
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nthreads=atoi(argv[5]);
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cout << "Number of threads is: " << nthreads << endl;
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if (argc>6)
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nSubPixels=atoi(argv[6]);
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cout << "Number of subpixels is: " << nSubPixels << endl;
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if (argc>6) {
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nSubPixelsX=atoi(argv[6]);
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nSubPixelsY=nSubPixelsX;
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#ifdef RECT
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nSubPixelsX=2;
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#endif
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}
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cout << "Number of subpixels is: " << nSubPixelsX << " " << nSubPixelsY << endl;
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char *gainfname=NULL;
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if (argc>7) {
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@ -119,12 +123,12 @@ int main(int argc, char *argv[]) {
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}
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//slsDetectorData *det=new moench03T1ZmqDataNew();
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moench03T1ZmqDataNew *det=new moench03T1ZmqDataNew(5000,sizeof(int));
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moench03T1ZmqDataNew *det=new moench03T1ZmqDataNew();
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cout << endl << " det" <<endl;
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int npx, npy;
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det->getDetectorSize(npx, npy);
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int send_something=0;
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int maxSize = npx*npy*2;//32*2*8192;//5000;//atoi(argv[3]);
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@ -137,15 +141,8 @@ int main(int argc, char *argv[]) {
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int ncol_cm=CM_ROWS;
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double xt_ghost=C_GHOST;
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moench03CommonMode *cm=NULL;
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moench03GhostSummation *gs=NULL;
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#ifdef CORR
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cm=new moench03CommonMode(ncol_cm);
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gs=new moench03GhostSummation(det, xt_ghost);
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#endif
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moench03CommonMode *cm=new moench03CommonMode(ncol_cm);
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moench03GhostSummation *gs=new moench03GhostSummation(det, xt_ghost);
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double *gainmap=NULL;
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float *gm;
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double *gmap=NULL;
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@ -173,18 +170,18 @@ int main(int argc, char *argv[]) {
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//analogDetector<uint16_t> *filter=new analogDetector<uint16_t>(det,1,NULL,1000);
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#ifndef INTERP
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singlePhotonDetector *filter=new singlePhotonDetector(det,3, nSigma, 1, cm, nped, nped0, -1, -1, gainmap, gs);
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singlePhotonDetector *filter=new singlePhotonDetector(det,3, nSigma, 1, cm, 1000, 10, -1, -1, gainmap, gs);
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multiThreadedCountingDetector *mt=new multiThreadedCountingDetector(filter,nthreads,fifosize);
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// multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
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#endif
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#ifdef INTERP
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eta2InterpolationPosXY *interp=new eta2InterpolationPosXY(npx, npy, nSubPixels, etabins, etamin, etamax);
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eta2InterpolationPosXY *interp=new eta2InterpolationPosXY(npx, npy, nSubPixelsX,nSubPixelsY, etabins, etabinsy, etamin, etamax);
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if (etafname) interp->readFlatField(etafname);
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interpolatingDetector *filter=new interpolatingDetector(det,interp, nSigma, 1, cm, nped, nped0, -1, -1, gainmap, gs);
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interpolatingDetector *filter=new interpolatingDetector(det,interp, nSigma, 1, cm, 1000, 10, -1, -1, gainmap, gs);
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multiThreadedInterpolatingDetector *mt=new multiThreadedInterpolatingDetector(filter,nthreads,fifosize);
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#endif
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@ -275,7 +272,17 @@ int main(int argc, char *argv[]) {
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// header variables
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uint64_t acqIndex = -1;
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uint64_t frameIndex = -1;
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//uint32_t subFrameIndex = -1;
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#ifdef MOENCH_BRANCH
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uint32_t subFrameIndex = -1;
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int* flippedData = 0;
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#endif
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uint64_t subframes=0;
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//uint64_t isubframe=0;
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uint64_t insubframe=0;
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double subnorm=1;
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uint64_t f0=-1, nsubframes=0, nnsubframe=0;
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uint64_t fileindex = -1;
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string filename = "";
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// char* image = new char[size];
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@ -285,10 +292,10 @@ int main(int argc, char *argv[]) {
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int iframe=0;
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char ofname[10000];
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char fname[10000];
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string fname;
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// int length;
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int *detimage;
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int nnx, nny,nns;
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int *detimage=NULL;
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int nnx, nny,nnsx, nnsy;
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//uint32_t imageSize = 0, nPixelsX = 0, nPixelsY = 0,
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//uint32_t dynamicRange = 0;
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// infinite loop
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@ -304,12 +311,11 @@ int main(int argc, char *argv[]) {
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//int16_t *dout;//=new int16_t [nnx*nny];
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uint32_t dr = 32;
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int32_t *dout=NULL;//=new int32_t [nnx*nny];
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float *doutf=NULL;//=new int32_t [nnx*nny];
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uint16_t roundRNumber = 0;
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uint8_t detType = 0;
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uint8_t version = 0;
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// int* flippedData = 0;
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string* additionalJsonHeader = 0;
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//char* additionalJsonHeader = 0;
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string additionalJsonHeader="" ;
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int32_t threshold=0;
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@ -327,7 +333,7 @@ int main(int argc, char *argv[]) {
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frameMode fMode=eFrame;
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double *ped;
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filter->getImageSize(nnx, nny,nns);
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filter->getImageSize(nnx, nny,nnsx, nnsy);
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@ -368,40 +374,75 @@ int main(int argc, char *argv[]) {
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cprintf(RED, "Sent Dummy\n");
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}
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} else {
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if (fMode==ePedestal) {
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sprintf(ofname,"%s_%ld_ped.tiff",fname,fileindex);
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mt->writePedestal(ofname);
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cout << "Writing pedestal to " << ofname << endl;
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if (rms) {
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sprintf(ofname,"%s_%ld_var.tiff",fname,fileindex);
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mt->writePedestalRMS(ofname);
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cout << "Writing pedestal variance to " << ofname << endl;
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}
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}
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send_something=0;
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if (fMode==ePedestal) {
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sprintf(ofname,"%s_%ld_ped.tiff",fname.c_str(),fileindex);
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mt->writePedestal(ofname);
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cout << "Writing pedestal to " << ofname << endl;
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if (rms){
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sprintf(ofname,"%s_%ld_var.tiff",fname.c_str(),fileindex);
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mt->writePedestalRMS(ofname);
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}
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send_something=1;
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}
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#ifdef INTERP
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else if (fMode==eFlat) {
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mt->prepareInterpolation(ok);
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sprintf(ofname,"%s_%ld_eta.tiff",fname,fileindex);
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mt->writeFlatField(ofname);
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cout << "Writing eta to " << ofname << endl;
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}
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else if (fMode==eFlat) {
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mt->prepareInterpolation(ok);
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sprintf(ofname,"%s_%ld_eta.tiff",fname.c_str(),fileindex);
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mt->writeFlatField(ofname);
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cout << "Writing eta to " << ofname << endl;
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send_something=1;
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}
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#endif
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else {
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sprintf(ofname,"%s_%ld.tiff",fname,fileindex);
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mt->writeImage(ofname);
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cout << "Writing image to " << ofname << endl;
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}
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// cout << nns*nnx*nny*nns*dr/8 << " " << length << endl;
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else {
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if (subframes>0 ) {
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if (insubframe>0) {
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sprintf(ofname,"%s_sf%ld_%ld.tiff",fname.c_str(),nnsubframe,fileindex);
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// mt->writeImage(ofname);
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doutf= new float[nnx*nny];
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if (subframes>0 && insubframe!=subframes && insubframe>0)
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subnorm=((double)subframes)/((double)insubframe);
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else
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subnorm=1.;
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for (int ix=0; ix<nnx*nny; ix++) {
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doutf[ix]=detimage[ix]*subnorm;
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if (doutf[ix]<0) doutf[ix]=0;
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}
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cout << "Writing image to " << ofname << endl;
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WriteToTiff(doutf,ofname ,nnx, nny);
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if (doutf)
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delete [] doutf;
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doutf=NULL;
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nsubframes++;
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insubframe=0;
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send_something=1;
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}
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} else {
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sprintf(ofname,"%s_%ld.tiff",fname.c_str(),fileindex);
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mt->writeImage(ofname);
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send_something=1;
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}
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cout << "Writing image to " << ofname << endl;
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}
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// cout << nns*nnx*nny*nns*dr/8 << " " << length << endl;
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if (send) {
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if (fMode==ePedestal) {
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cprintf(MAGENTA,"Get pedestal!\n");
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nns=1;
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nnsx=1;
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nnsy=1;
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nnx=npx;
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nny=npy;
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//dout= new int16_t[nnx*nny*nns*nns];
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dout= new int32_t[nnx*nny*nns*nns];
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dout= new int32_t[nnx*nny*nnsx*nnsy];
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// cout << "get pedestal " << endl;
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ped=mt->getPedestal();
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// cout << "got pedestal " << endl;
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@ -409,7 +450,7 @@ int main(int argc, char *argv[]) {
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dout[ix]=ped[ix];
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// if (ix<100*400)
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// cout << ix << " " << ped[ix] << " "<< dout[ix] << endl;
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// cout << ix << " " << ped[ix] << endl;
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}
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}
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@ -427,15 +468,19 @@ int main(int argc, char *argv[]) {
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}
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#endif
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else {
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detimage=mt->getImage(nnx,nny,nns);
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detimage=mt->getImage(nnx,nny,nnsx, nnsy);
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cprintf(MAGENTA,"Get image!\n");
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cout << nnx << " " << nny << " " << nns << endl;
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cout << nnx << " " << nny << " " << nnsx << " " << nnsy << endl;
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// nns=1;
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// nnx=npx;
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// nny=npy;
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// nnx=nnx*nns;
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//nny=nny*nns;
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dout= new int32_t[nnx*nny];
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if (subframes>0 && insubframe!=subframes && insubframe>0)
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subnorm=((double)subframes)/((double)insubframe);
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else
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subnorm=1.;
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for (int ix=0; ix<nnx*nny; ix++) {
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// for (int iy=0; iy<nny*nns; iy++) {
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// for (int isx=0; isx<nns; isx++) {
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@ -447,53 +492,29 @@ int main(int argc, char *argv[]) {
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// }
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// }
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dout[ix]=detimage[ix];
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if (dout[ix]<0) dout[ix]=0;
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//cout << ix << " " << dout[ix] << endl;
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dout[ix]=detimage[ix]*subnorm;
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if (dout[ix]<0) dout[ix]=0;
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// cout << ix << " " << dout[ix] << endl;
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// }
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}
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}
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//if ((insubframe>0 && subframes>0) || (subframes<=0) ){
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//// int SendHeaderData ( int index, bool dummy, uint32_t jsonversion, uint32_t dynamicrange = 0, uint64_t fileIndex = 0,
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// uint32_t ndetx = 0, uint32_t ndety = 0, uint32_t npixelsx = 0, uint32_t npixelsy = 0, uint32_t imageSize = 0,
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// uint64_t acqIndex = 0, uint64_t fIndex = 0, const char* fname = NULL,
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// uint64_t frameNumber = 0, uint32_t expLength = 0, uint32_t packetNumber = 0,
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// uint64_t bunchId = 0, uint64_t timestamp = 0,
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// uint16_t modId = 0, uint16_t row = 0, uint16_t column = 0, uint16_t reserved = 0,
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// uint32_t debug = 0, uint16_t roundRNumber = 0,
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// uint8_t detType = 0, uint8_t version = 0, int gapPixelsEnable = 0, int flippedDataX = 0,
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// char* additionalJsonHeader = 0) {
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// cout << "Sending image size " << nnx << " " << nny << endl;
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// #ifndef DEVELOPER
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// #ifndef MOENCH_BRANCH
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// zmqsocket2->SendHeaderData (0, false, SLS_DETECTOR_JSON_HEADER_VERSION, dr, fileindex, 1,1, nnx, nny, nnx*nny*dr/8,acqIndex, frameIndex, fname, acqIndex,0 , packetNumber,bunchId, timestamp, modId, xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, additionalJsonHeader);
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// #endif
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// #endif
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// #ifdef DEVELOPER
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// #ifdef CTBGUI
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// zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 0,0,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,additionalJsonHeader);
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// #endif
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// #ifndef CTBGUI
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zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 1,1,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,additionalJsonHeader);
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//#endif
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zmqsocket2->SendData((char*)dout,nnx*nny*dr/8);
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cprintf(GREEN, "Sent Data\n");
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zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
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cprintf(RED, "Sent Dummy\n");
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if (dout)
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delete [] dout;
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dout=NULL;
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if(send_something) {
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zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 1,1,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,&additionalJsonHeader);
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zmqsocket2->SendData((char*)dout,nnx*nny*dr/8);
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cprintf(GREEN, "Sent Data\n");
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}
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zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
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cprintf(RED, "Sent Dummy\n");
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if (dout)
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delete [] dout;
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dout=NULL;
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}
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}
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@ -541,8 +562,8 @@ int main(int argc, char *argv[]) {
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//dataSize=size;
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strcpy(fname,filename.c_str());
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//strcpy(fname,filename.c_str());
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fname=filename;
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// cprintf(BLUE, "Header Info:\n"
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// "size: %u\n"
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// "multisize: %u\n"
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@ -585,7 +606,7 @@ int main(int argc, char *argv[]) {
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if (frameMode_s == "pedestal"){
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fMode=ePedestal;
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//isPedestal=1;
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} else if (frameMode_s == "newpedestal"){
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} else if (frameMode_s == "newPedestal"){
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mt->newDataSet(); //resets pedestal
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// cprintf(MAGENTA, "Resetting pedestal\n");
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fMode=ePedestal;
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@ -594,8 +615,8 @@ int main(int argc, char *argv[]) {
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mt->newDataSet(); //resets pedestal
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// cprintf(MAGENTA, "Resetting pedestal\n");
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fMode=ePedestal;
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rms=1;
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//isPedestal=1;
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rms=1;
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}
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#ifdef INTERP
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else if (frameMode_s == "flatfield") {
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@ -616,13 +637,11 @@ int main(int argc, char *argv[]) {
|
||||
frameMode_s="frame";
|
||||
}
|
||||
}
|
||||
cprintf(MAGENTA, "%s\n" , frameMode_s.c_str());
|
||||
} else
|
||||
cprintf(RED, "%s\n" , frameMode_s.c_str());
|
||||
|
||||
}
|
||||
cprintf(MAGENTA, "%s\n" , frameMode_s.c_str());
|
||||
mt->setFrameMode(fMode);
|
||||
|
||||
threshold=0;
|
||||
// threshold=0;
|
||||
cprintf(MAGENTA, "Threshold: ");
|
||||
if (doc.HasMember("threshold")) {
|
||||
if (doc["threshold"].IsInt()) {
|
||||
@ -690,11 +709,10 @@ int main(int argc, char *argv[]) {
|
||||
}
|
||||
}
|
||||
|
||||
cprintf(MAGENTA, "%s\n" , detectorMode_s.c_str());
|
||||
} else
|
||||
cprintf(RED, "%s\n" , frameMode_s.c_str());
|
||||
}
|
||||
|
||||
mt->setDetectorMode(dMode);
|
||||
cprintf(MAGENTA, "%s\n" , detectorMode_s.c_str());
|
||||
|
||||
// cout << "done " << endl;
|
||||
|
||||
@ -737,6 +755,21 @@ int main(int argc, char *argv[]) {
|
||||
// mt->setNSubPixels(nSubPixels);
|
||||
// }
|
||||
|
||||
// threshold=0;
|
||||
cprintf(MAGENTA, "Subframes: ");
|
||||
subframes=0;
|
||||
//isubframe=0;
|
||||
insubframe=0;
|
||||
subnorm=1;
|
||||
f0=0;
|
||||
nnsubframe=0;
|
||||
if (doc.HasMember("subframes")) {
|
||||
if (doc["subframes"].IsInt()) {
|
||||
subframes=doc["subframes"].GetInt();
|
||||
}
|
||||
}
|
||||
cprintf(MAGENTA, "%ld\n", subframes);
|
||||
|
||||
|
||||
newFrame=0;
|
||||
/* zmqsocket->CloseHeaderMessage();*/
|
||||
@ -745,7 +778,7 @@ int main(int argc, char *argv[]) {
|
||||
|
||||
// cout << "file" << endl;
|
||||
// cout << "data " << endl;
|
||||
if (of==NULL && dMode!=eAnalog && fMode!=ePedestal && threshold<=0) {
|
||||
if (of==NULL) {
|
||||
#ifdef WRITE_QUAD
|
||||
sprintf(ofname,"%s_%ld.clust2",filename.c_str(),fileindex);
|
||||
#endif
|
||||
@ -760,33 +793,98 @@ int main(int argc, char *argv[]) {
|
||||
mt->setFilePointer(NULL);
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
|
||||
// cout << "data" << endl;
|
||||
// get data
|
||||
// acqIndex = doc["acqIndex"].GetUint64();
|
||||
|
||||
frameIndex = doc["fIndex"].GetUint64();
|
||||
|
||||
// subFrameIndex = doc["expLength"].GetUint();
|
||||
|
||||
// bunchId=doc["bunchId"].GetUint();
|
||||
// timestamp=doc["timestamp"].GetUint();
|
||||
packetNumber=doc["packetNumber"].GetUint();
|
||||
// cout << acqIndex << " " << frameIndex << " " << subFrameIndex << " "<< bunchId << " " << timestamp << " " << packetNumber << endl;
|
||||
if (packetNumber>=40) {
|
||||
//*((int*)buff)=frameIndex;
|
||||
memcpy(buff,&frameIndex,sizeof(int));
|
||||
//length =
|
||||
zmqsocket->ReceiveData(0, buff+sizeof(int), size);
|
||||
mt->pushData(buff);
|
||||
mt->nextThread();
|
||||
mt->popFree(buff);
|
||||
cprintf(GREEN, "Frame\n");
|
||||
} else {
|
||||
cprintf(RED, "Incomplete frame: received only %d packet\n", packetNumber);
|
||||
//length =
|
||||
zmqsocket->ReceiveData(0, dummybuff, size);
|
||||
packetNumber=doc["packetNumber"].GetUint();
|
||||
// cout << acqIndex << " " << frameIndex << " " << subFrameIndex << " "<< bunchId << " " << timestamp << " " << packetNumber << endl;
|
||||
if (packetNumber>=40) {
|
||||
//*((int*)buff)=frameIndex;
|
||||
if (insubframe==0) f0=frameIndex;
|
||||
memcpy(buff,&frameIndex,sizeof(int));
|
||||
//length =
|
||||
zmqsocket->ReceiveData(0, buff+sizeof(int), size);
|
||||
mt->pushData(buff);
|
||||
mt->nextThread();
|
||||
mt->popFree(buff);
|
||||
insubframe++;
|
||||
nsubframes=frameIndex+1-f0;
|
||||
} else {
|
||||
cprintf(RED, "Incomplete frame: received only %d packet\n", packetNumber);
|
||||
//length =
|
||||
zmqsocket->ReceiveData(0, dummybuff, size);
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
if (subframes>0 && insubframe>=subframes && fMode==eFrame) {
|
||||
while (mt->isBusy()) {;}//wait until all data are processed from the queues
|
||||
detimage=mt->getImage(nnx,nny,nnsx, nnsy);
|
||||
cprintf(MAGENTA,"Get image!\n");
|
||||
dout= new int32_t[nnx*nny];
|
||||
doutf= new float[nnx*nny];
|
||||
if (subframes>0 && insubframe!=subframes && insubframe>0)
|
||||
subnorm=((double)subframes)/((double)insubframe);
|
||||
else
|
||||
subnorm=1.;
|
||||
for (int ix=0; ix<nnx*nny; ix++) {
|
||||
dout[ix]=detimage[ix]*subnorm;
|
||||
if (dout[ix]<0) dout[ix]=0;
|
||||
doutf[ix]=dout[ix];
|
||||
}
|
||||
sprintf(ofname,"%s_sf%ld_%ld.tiff",fname.c_str(),nnsubframe,fileindex);
|
||||
|
||||
cout << "Writing image to " << ofname << endl;
|
||||
|
||||
WriteToTiff(doutf,ofname ,nnx, nny);
|
||||
nsubframes++;
|
||||
insubframe=0;
|
||||
nnsubframe++;
|
||||
|
||||
|
||||
|
||||
zmqsocket2->SendHeaderData (0, false,SLS_DETECTOR_JSON_HEADER_VERSION , dr, fileindex, 1,1,nnx,nny,nnx*nny*dr/8,acqIndex, frameIndex, fname,acqIndex,0 , packetNumber,bunchId, timestamp, modId,xCoord, yCoord, zCoord,debug, roundRNumber, detType, version, 0,0, 0,&additionalJsonHeader);
|
||||
|
||||
zmqsocket2->SendData((char*)dout,nnx*nny*dr/8);
|
||||
cprintf(GREEN, "Sent subdata\n");
|
||||
|
||||
|
||||
if (dout)
|
||||
delete [] dout;
|
||||
dout=NULL;
|
||||
|
||||
if (doutf)
|
||||
delete [] doutf;
|
||||
doutf=NULL;
|
||||
|
||||
mt->clearImage();
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
iframe++;
|
||||
|
||||
} // exiting infinite loop
|
||||
|
||||
Reference in New Issue
Block a user