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The command line arguments were:
- latex2html -split 4 angularCalibrationHowTo.tex
+ latex2html -local_icons -split 4 angularCalibrationHowTo.tex
The translation was initiated by Thattil Dhanya on 2019-04-08
-
-
+
+
+
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The command line arguments were:
- latex2html -split 4 energyCalibrationHowTo.tex
+ latex2html -local_icons -split 4 energyCalibrationHowTo.tex
The translation was initiated by Thattil Dhanya on 2019-04-08
-
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+
+
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+
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+
The command line arguments were:
- latex2html -split 4 slsDetectorClientHowTo.tex
+ latex2html -local_icons -split 4 slsDetectorClientHowTo.tex
The translation was initiated by Thattil Dhanya on 2019-04-08
-
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+
+
+
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The command line arguments were:
- latex2html -split 4 slsDetectorGuiHowTo.tex
+ latex2html -local_icons -split 4 slsDetectorGuiHowTo.tex
The translation was initiated by Thattil Dhanya on 2019-04-08
+
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+
noise.snxxx where xxx is the module serial number.
-caldir should contain three subdirectories standard, fast and highgain containing respectively the trimfiles standard.cal, fast.cal and highgain.cal which contain an average calibration of the modules for the diffrent settings. However this can different from the correct one for each individual module even of several kev and therefore it is very important to perform an energy calibration on a module basis (see section ![[*]](file:/usr/share/latex2html/icons/crossref.png){kind=icon}
).
+caldir should contain three subdirectories standard, fast and highgain containing respectively the trimfiles standard.cal, fast.cal and highgain.cal which contain an average calibration of the modules for the diffrent settings. However this can different from the correct one for each individual module even of several kev and therefore it is very important to perform an energy calibration on a module basis (see section ![[*]](crossref.png)
).
The default calibration files for each file will be stored in the directory according to the settings with the name calibration.snxxx where xxx is the module serial number.
@@ -73,16 +69,13 @@ The default calibration files for each file will be stored in the directory acco
-
+
-
+
-
+
Next: slsDetectorClient
diff --git a/docs/html/slsDetectorGuiHowTo/node8.html b/docs/html/slsDetectorGuiHowTo/node8.html
index 35e0c7545..696cb6a7f 100644
--- a/docs/html/slsDetectorGuiHowTo/node8.html
+++ b/docs/html/slsDetectorGuiHowTo/node8.html
@@ -28,16 +28,13 @@ original version by: Nikos Drakos, CBLU, University of Leeds
-
+
-
+
-
+
Next: Introduction
diff --git a/docs/html/slsDetectorGuiHowTo/node9.html b/docs/html/slsDetectorGuiHowTo/node9.html
index 243670be0..529213f0e 100644
--- a/docs/html/slsDetectorGuiHowTo/node9.html
+++ b/docs/html/slsDetectorGuiHowTo/node9.html
@@ -28,16 +28,13 @@ original version by: Nikos Drakos, CBLU, University of Leeds
-
+
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+
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+
Next: Acquisition
@@ -86,16 +83,13 @@ There are different ways for communicationg with your detector(s).
-
+
-
+
-
+
Next: Acquisition
diff --git a/docs/html/slsDetectorGuiHowTo/prev.png b/docs/html/slsDetectorGuiHowTo/prev.png
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diff --git a/docs/html/slsDetectorGuiHowTo/slsDetectorGuiHowTo.html b/docs/html/slsDetectorGuiHowTo/slsDetectorGuiHowTo.html
index 16ff9258c..ca8dff2eb 100644
--- a/docs/html/slsDetectorGuiHowTo/slsDetectorGuiHowTo.html
+++ b/docs/html/slsDetectorGuiHowTo/slsDetectorGuiHowTo.html
@@ -25,12 +25,9 @@ original version by: Nikos Drakos, CBLU, University of Leeds
-
-
-
+
+
+
Next: Installation and upgrades
diff --git a/docs/html/slsDetectorGuiHowTo/up.png b/docs/html/slsDetectorGuiHowTo/up.png
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diff --git a/docs/html/slsDetectorInstall/About_this_document.html b/docs/html/slsDetectorInstall/About_this_document.html
new file mode 100644
index 000000000..a7389a95d
--- /dev/null
+++ b/docs/html/slsDetectorInstall/About_this_document.html
@@ -0,0 +1,73 @@
+
+
+
+
+
+
+
+
+
+
+
++This document was generated using the +LaTeX2HTML translator Version 2012 (1.2) +
+Copyright © 1993, 1994, 1995, 1996,
+Nikos Drakos,
+Computer Based Learning Unit, University of Leeds.
+
+Copyright © 1997, 1998, 1999,
+Ross Moore,
+Mathematics Department, Macquarie University, Sydney.
+
+The command line arguments were:
+ latex2html -local_icons -split 16 -long_titles 5 slsDetectorInstall.tex
+
+The translation was initiated by Thattil Dhanya on 2019-04-08
+
+
+
+
+
+
+
++ +
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+One can use the cleansharedmemory.sh script available under the
+slsDetector Package.
+
+
+One can also just delete the files that are typically located under /dev/shm/ folder +and starts with slsDetectorPackage. + +
+One no longer has to delete segments using ipcs. + +
+
+
+
+
+
+
+
+cmake to compile and can be done in two ways:
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
++Use cmake to create out-of-source builds, by creating a build folder parallel to +source directory. +
+ $ cd .. + $ mkdir slsDetectorPackage-build + $ cd slsDetectorPackage-build + $ cmake ../slsDetectorPackage -DCMAKE_BUILD_TYPE=Debug -DSLS_USE_HDF5=OFF + $ make ++ +
+Use the following as an example to compile statically and using specific hdf5 +folder +
+ $ HDF5_ROOT=/opt/hdf5v1.10.0 cmake ../slsDetectorPackage +-DCMAKE_BUILD_TYPE=Debug -DSLS_USE_HDF5=ON ++ +
+After compiling, the libraries and executables will be found at `bin` directory +
+ $ ls bin/ + gui_client libSlsDetector.a libSlsDetector.so libSlsReceiver.a +libSlsReceiver.so sls_detector_acquire sls_detector_get slsDetectorGui +sls_detector_help sls_detector_put slsReceiver ++ +
+
+
+
+
+
+
+
++ +
+#Clone source code with specific release +git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git --branch +4.0.0 ++
+#Clone source code with specific release +git clone https://github.com/slsdetectorgroup/sls_detector.git --branch +4.0.0 ++
+
+
+
+
+
+
+
++In such cases, the users are not expected to compile the software +themselves (which would require dedicated softwares) but only to download on the +detector board the programming files and/or software package provided by +the SLS Detectors group. + +
+
+
+
+
+
+
+
++ +
+ boot_recovery ++
+ nc -p 3000 -u bebxxx 3000 ++
+ #update back end fpga +bcp download.bit bebxxx:/fw0 + + #update front left fpga +bcp download.bit bebxxx:/febl + + #update front right fpga +bcp download.bit bebxxx:/febr + + #update kernel +bcp download.bit bebxxx:/kernel ++Please update bit files with great caution as it could make your board +inaccessible, if done incorrectly. +
+
+
+
+
+
+
+
++Update the on-board software without connecting to the detector +
+#password for the boards: root + +#Kill existing servers that are running on the detector +ssh root@beb031 killall eigerDetectorServer; + +#Copy on-board server to detector inside executables folder +scp ~/path-where-it-is/eigerDetectorServerxxx root@bebxxx:~/executables; + +#Overwrite the actual eigerDetectorServer on board +scp ~/path-where-it-is/eigerDetectorServerxxx +root@bebxxx:~/executables/eigerDetectorServer; + +#sync +ssh root@bebxxx sync; + +#reboot the eiger board ++ +
+ +
+
+One can connect to the detector by:
+
+ssh root@bebxxx +password: root ++ +
+The on-board server is in /executables folder and respawned at startup in
+/etc/rc5.d/S50board_com.sh
+
+
+
+
+
+
+
+
+
++In such cases, the users are not expected to compile the software +themselves (which would require dedicated softwares) but only to download on the +detector board the programming files and/or software package provided by +the SLS Detectors group. + +
+
+
+
+
+
+
+
++Normally, the firmware will be upgraded by us as it requires programming the +FPGA via the USB-Blaster. + +
+To upgrade the firmware you need either a working version of the Altera
+Quartus software or of the Quartus programmer, which can easily be downloaded
+from:
+
https://www.altera.com/download/programming/quartus2/pq2-index.jsp
+
+Normally, installation of the software and of the driver for the +USB-Blaster (provided together with the MYTHEN detector) are simpler under +Windows. + +
+Under Windows, the first time that you connect the USB-Blaster to one
+of your USB ports, you will be asked to install new hardware. Set the path to
+search for the driver to:
+C:\altera\80sp1\qprogrammer\drivers\usb-blasterp (where
+C:\altera\80sp1\qprogrammer\ is assumed to be ther path where your
+Quartus version is installed).
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
++ +
telnet bchipxxx
+/etc/inittab
+#ttyS0::respawn:/gotthardDetectorServervxxx
+reboot
+ps to ensure no gotthardDetectorServers are running
+
+tftp pcxxx -r gotthardDetectorServerxxx -g
+/etc/inittab
+ttyS0::respawn:/gotthardDetectorServervxxx
+reboot
+ps to ensure that both the gotthardDetectorServers are
+running.
+gotthardDetectorServerxxx
+gotthardDetectorServerxxx 1953
+
+
+
+
+
+
+
+
+
++One can download and install Miniconda via + +
+https://conda.io/miniconda.html +
+The conda package uses Travis CI for continuous integration with +automatic deployment to Anaconda Cloud. One can download only the package or the +package including the python interface. + +
+After the installation, the binaries will be available in your path. + +
+Please remember to clear shared memory after installation. +
+#displays list of shared memeory segments +ipcs -m +#remove segments that have nattach equal to zero. They key is the first column +ipcrm -M [key] ++ +
+ +
+#Add conda channels +conda config --add channels conda-forge +conda config --add channels slsdetectorgroup + +#Install latest version +conda install sls_detector_lib +conda install sls_detector_gui + +#Install specific release +conda install sls_detector_lib=4.0.0 +conda install sls_detector_gui=4.0.0 ++
+#Add conda channels +conda config --add channels conda-forge +conda config --add channels sls_detector + +#Install latest version +conda install sls_detector + +#Install specific release +conda install sls_detector=4.0.0 ++
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
++In such cases, the users are not expected to compile the software +themselves (which would require dedicated softwares) but only to download on the +detector board the programming files and/or software package provided by +the SLS Detectors group. + +
+
+
+
+
+
+
+
++At times, one has to update the firmware, which then also requires updating the +on-board software. + +
+Jungfrau firmware can be upgraded via the SLS Detector Package +binaries from the command line. + +
+ +
telnet bchipxxx
+/etc/inittab
+#ttyS0::respawn:/jungfrauDetectorServervxxx
+reboot
+ps to ensure no jungfrauDetectorServers are running
+
+./jungfrauDetectorServerxxx -update
+./sls_detector_get free
+slsDetectorPackage/cleansharedmemory.sh
+./sls_detector_put hostname bchipxxx
+./sls_detector_put programfpga xxx.pof
+./jungfrauDetectorServerxxx
+/etc/inittab
+ttyS0::respawn:/jungfrauDetectorServervxxx
+reboot
+ps to ensure that both the gotthardDetectorServers are
+running.
+jungfrauDetectorServervxxx
+jungfrauDetectorServervxxx 1953
+
++
+
+
+
+
+
+
+
+
+
+
+
+
+
+
++ +
telnet bchipxxx
+/etc/inittab
+#ttyS0::respawn:/jungfrauDetectorServervxxx
+reboot
+ps to ensure no gotthardDetectorServers are running
+
+tftp pcxxx -r jungfrauDetectorServervxxx -g
+/etc/inittab
+ttyS0::respawn:/jungfrauDetectorServervxxx
+reboot
+ps to ensure that both the gotthardDetectorServers are
+running.
+jungfrauDetectorServervxxx
+jungfrauDetectorServervxxx 1953
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+To upgrade the firmware you need either a working version of the Altera
+Quartus software or of the Quartus programmer, which can easily be downloaded
+from:
+
https://www.altera.com/download/programming/quartus2/pq2-index.jsp
+
+
+
+
+Normally, installation of the software and of the driver for the +USB-Blaster (provided together with the MYTHEN detector) are simpler under +Windows. + +
+Under Windows, the first time that you connect the USB-Blaster to one
+of your USB ports, you will be asked to install new hardware. Set the path to
+search for the driver to:
+C:\altera\80sp1\qprogrammer\drivers\usb-blasterp (where
+C:\altera\80sp1\qprogrammer\ is assumed to be ther path where your
+Quartus version is installed).
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
++telnet mymcs.mydomain.com +username: root +password: pass ++
/mnt/flash/root exists.
++killall mythenDetectorServer +ls /mnt/flash/root +#if the directory does not exist mkdir /mnt/flash/root ++
+ftp mymcs.mydomain.com +username: root +password: pass +cd /mnt/flash/root +put mythenDetectorServer +quit ++ +
+
+
/mnt/etc/inittab ends with the line
+myid2:3:once:/mnt/flash/root/mythenDetectorServer).
+chmod a+xrw /mnt/flash/root/mythenDetectorServer
+
+
+
+
+
+
+
+
++ yum install qt-devel ++
+To install: +
+> gunzip qt-everywhere-opensource-src-4.8.2.tar.gz +> tar xvf qt-everywhere-opensource-src-4.8.2.tar +> ./configure +> make +> make install ++By default Qt4 will be installed in /usr/local/Trolltech/Qt-4.8.2/. +
+Setup Environment + +
+One has to ensure that PATH and LD_LIBRARY_PATH have
+been updated to include Qt4 install path, binaries and libraries.
+Confirm by executing qmake -v and ensuring the result points to Qt4 (not
+Qt3 or Qt5).
+
+
+If the environment is not set up, one can add the libraries and
+executables to the .bashrc by adding
+LD_LIBRARY_PATH and PATH:
+
+export QTDIR=/usr/local/Trolltech/Qt-4.8.2 +export PATH=$QTDIR/bin:$PATH +export LD_LIBRARY_PATH=$QTDIR/lib:$LD_LIBRARY_PATH ++ +
+
+
+
+
+
+
+
+QTDIR, LD_LIBRARY_PATH and PATH point to
+the correct Qt4
+version.
+
++A Qwt version equal or higher than 6 is required. One can +install it: + +
+ yum install qwt-devel ++
+To install: +
+> cd qwt-6.0.0 +> qmake +> make +> make install ++By default Qwt will be installed int /usr/local/qwt-6.0.0 +
+Setup Environment + +
+One has to ensure that QWTDIR and LD_LIBRARY_PATH have
+been updated to include Qwt install path and libraries.
+
+
+If the environment is not set up, one can add the libraries to the
+.bashrc by adding LD_LIBRARY_PATH:
+
+export QWTDIR=/usr/local/qwt-6.0.0/ +export LD_LIBRARY_PATH=$QWTDIR/lib:$LD_LIBRARY_PATH ++ +
+
+
+
+
+
+
+
++
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
++> svn co https://root.cern.ch/svn/root/trunk root ++ +
+To install: +
+> cd root +> ./configure --enable-qt +> make +> make install ++ +
+Edit your .bashrc to define the ROOTSYS enviroment variable and annd
+the libraries and executables to the LD_LIBRARY_PATH and PATH:
+
+export ROOTSYS=/usr/local/root-5.34 +export PATH=$ROOTSYS/bin:$PATH +export LD_LIBRARY_PATH=$ROOTSYS/lib:$LD_LIBRARY_PATH ++ +
+You can also download the binaries, assuming that your linux and gcc versions +match as in: +
+http://root.cern.ch/drupal/content/production-version-534 ++ +
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
++MYTHEN, GOTTHARD, EIGER and JUNGFRAU. + +
+The package provides software for the distributed system that comprises of +detectors, data receivers (to process detector data), and the client (to control +or monitor the system). The client and data receivers can be embedded in +the user's acquisitions system. Furthermore, the package also provides some +tools for detector calibration. + +
+
+
+
+
+
+
+
++The upgrade of the package could require an upgrade of the on-board detector +server and/or firmware running on the detector as well. + +
+
+
+
+
+
+
+
+emacs ~/.bashrc
+setup_slsdet and replace path
+with absolute path of installed directory
+
+function setup_slsdet
+{
+export PKGPATH=[path]
+export LD_LIBRARY_PATH=$PKGPATH/slsDetectorPackage/build/bin:$LD_LIBRARY_PATH
+export PATH=$PKGPATH/slsDetectorPackage/build/bin:$PATH
+cd $PKGPATH/slsDetectorPackage/build/bin
+}
+
+source ~/.bashrc
+setup_slsdet to load the environment
+variables.
+
+One can also add the GUI environment variables if installed locally by adding
+the following in the function setup_sldet
+
+export QTDIR=/path-where-it-is/Qt-4.8.2 +export QWTDIR=/path-where-it-is/qwt-6.0.1 +export QWT3D=/path-where-it-is/qwtplot3d +export QMAKESPEC=$QTDIR/mkspecs/linux-g++ +export LD_LIBRARY_PATH=$QTDIR/lib:$QWTDIR/lib:$QWT3D/lib:$LD_LIBRARY _PATH +export PATH=$QTDIR/bin:$PATH ++ +
+
+
+
+
+
+
+
+cmake. After compiling, the libraries and executables
+will be found in `slsDetectorPackage/build/bin` directory.
+Usage: [-c] [-b] [-h] [-d HDF5 directory] [-j]
+
++Some example options for compilation: + +
+Most basic option: ./cmk.sh -b
+
+
+For only make: ./cmk.sh
+
+
+For make clean;make: ./cmk.sh -c
+
+
+For using hdf5 without custom dir /blabla: ./cmk.sh -h -d /blabla
+
+
+For rebuilding cmake without hdf5: ./cmk.sh -b
+
+
+For using multiple cores to compile faster: ./cmk.sh -j9
+
+
+For rebuilding only certain parts: ./cmk.sh -tg (only text client and
+gui)
+
+
+
+
+
+
+
+
+
++export LD_LIBRARY_PATH=$PWD:$LD_LIBRARY_PATH +export PATH=$PWD:$PATH ++ +
+
+
+
+
+
++ +
Anna Bergamaschi, Dhanya Thattil
+April 8, 2019
+
+
+
+
+
++ +
Anna Bergamaschi, Dhanya Thattil
+April 8, 2019
+.
+.
.
.
diff --git a/docs/html/slsDetectors-FAQ/images.aux b/docs/html/slsDetectors-FAQ/images.aux
deleted file mode 100644
index 075990843..000000000
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+++ /dev/null
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-\global\let\hyper@last\relax
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diff --git a/docs/html/slsDetectors-FAQ/images.log b/docs/html/slsDetectors-FAQ/images.log
deleted file mode 100644
index dba2c2a89..000000000
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+++ /dev/null
@@ -1,1649 +0,0 @@
-This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013) (format=latex 2018.8.23) 8 APR 2019 11:47
-entering extended mode
- restricted \write18 enabled.
- %&-line parsing enabled.
-**./images.tex
-(./images.tex
-LaTeX2e <2011/06/27>
-Babel and hyphenation patterns for english, dumylang, nohyphenation, lo
-aded.
-
-(/usr/share/texlive/texmf-dist/tex/latex/base/report.cls
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-- SLS Detectors Software
-- Which programs can I use to control my detector?
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- How can I control many detectors in parallel or independently?
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- How can I configure the data receiver?
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- What are settings and calibration files for?
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- How can the detector movement and position and I0 readout be customized for my beamline?
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- - General questions about detectors
- - Single photon counting detectors
-- Which detector settings should I choose?
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- How do I chose the comparator threshold?
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- How does the flat field correction work?
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- What happens when I trim the detector?
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- In what consists the energy calibration of the detector?
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- Why should I change the dynamic range of the counters?
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- When should I enable rate correction
- - Charge Integrating detectors
- - Angular conversion
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Subsections
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Subsections
-- Which programs can I use to control my detector?
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- - How can I configure the data receiver?
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Subsections
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-- Contents
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-- Which programs can I use to control my detector?
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Next: GOTTHARD Firmware
diff --git a/slsDetectorInstall/GOTTHARD_Firmware.html b/slsDetectorInstall/GOTTHARD_Firmware.html
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--- a/slsDetectorInstall/GOTTHARD_Firmware.html
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Next: GOTTHARD On-board Software
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Next: GOTTHARD On-board Software
diff --git a/slsDetectorInstall/GOTTHARD_On_board_Software.html b/slsDetectorInstall/GOTTHARD_On_board_Software.html
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Next: EIGER
diff --git a/slsDetectorInstall/Install_Binaries_via_Conda.html b/slsDetectorInstall/Install_Binaries_via_Conda.html
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--- a/slsDetectorInstall/Install_Binaries_via_Conda.html
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Next: Install via Source Code
diff --git a/slsDetectorInstall/Install_via_Source_Code.html b/slsDetectorInstall/Install_via_Source_Code.html
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Next: Download Source Code
diff --git a/slsDetectorInstall/JUNGFRAU.html b/slsDetectorInstall/JUNGFRAU.html
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Next: JUNGFRAU Firmware
diff --git a/slsDetectorInstall/JUNGFRAU_Firmware.html b/slsDetectorInstall/JUNGFRAU_Firmware.html
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Next: JUNGFRAU On-board Software
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Next: JUNGFRAU On-board Software
diff --git a/slsDetectorInstall/JUNGFRAU_On_board_Software.html b/slsDetectorInstall/JUNGFRAU_On_board_Software.html
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Next: About this document ...
diff --git a/slsDetectorInstall/MYTHEN.html b/slsDetectorInstall/MYTHEN.html
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Next: MYTHEN Firmware
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Next: MYTHEN On-board Software
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Next: MYTHEN On-board Software
diff --git a/slsDetectorInstall/MYTHEN_On_board_Software.html b/slsDetectorInstall/MYTHEN_On_board_Software.html
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Next: GOTTHARD
diff --git a/slsDetectorInstall/Qt4_Installation_GUI.html b/slsDetectorInstall/Qt4_Installation_GUI.html
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Next: Qwt Installation for GUI
diff --git a/slsDetectorInstall/Qwt_Installation_GUI.html b/slsDetectorInstall/Qwt_Installation_GUI.html
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Next: Root Installation for Calibration
diff --git a/slsDetectorInstall/Requirements.html b/slsDetectorInstall/Requirements.html
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Next: Qt4 Installation for GUI
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Next: Qt4 Installation for GUI
diff --git a/slsDetectorInstall/Root_Installation_Calibrati.html b/slsDetectorInstall/Root_Installation_Calibrati.html
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Next: Compilation
diff --git a/slsDetectorInstall/Setting_environment_variabl.html b/slsDetectorInstall/Setting_environment_variabl.html
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Next: Using .bashrc file
diff --git a/slsDetectorInstall/Software_Package.html b/slsDetectorInstall/Software_Package.html
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Next: Binaries
diff --git a/slsDetectorInstall/Software_Upgrade.html b/slsDetectorInstall/Software_Upgrade.html
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Next: MYTHEN
diff --git a/slsDetectorInstall/Using_bashrc_file.html b/slsDetectorInstall/Using_bashrc_file.html
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Next: Without .bashrc file
diff --git a/slsDetectorInstall/Using_script_cmk_sh.html b/slsDetectorInstall/Using_script_cmk_sh.html
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Next: Directly using cmake
diff --git a/slsDetectorInstall/Without_bashrc_file.html b/slsDetectorInstall/Without_bashrc_file.html
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Next: Clean Shared Memory
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Next: Contents
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Next: Contents
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