detectors/slsDetectorPackage
25
0
Fork 0
mirror of https://github.com/slsdetectorgroup/slsDetectorPackage.git synced 2025-07-08 09:01:17 +02:00
Code Issues Actions Packages Releases Activity

fix for empty roi vectors (which shouldnt be) as you cant know if its all or not in roi

Browse Source
This commit is contained in:
maliakal_d
2025-06-24 17:05:40 +02:00
parent 7258adfe15
commit 24fcfb3f9d
8 changed files with 176 additions and 174 deletions
Download Patch File Download Diff File Expand all files Collapse all files

13
slsReceiverSoftware/src/ClientInterface.cpp
View File

@ -1696,6 +1696,11 @@ int ClientInterface::get_receiver_roi(Interface &socket) {
auto retvals = impl()->getPortROIs();
LOG(logDEBUG1) << "Receiver roi retval:" << ToString(retvals);
auto size = static_cast<int>(retvals.size());
if (size != impl()->getNumberofUDPInterfaces()) {
throw RuntimeError("Invalid number of ROIs received: " +
std::to_string(size) + ". Expected: " +
std::to_string(impl()->getNumberofUDPInterfaces()));
}
socket.Send(size);
if (size > 0)
socket.Send(retvals);
@ -1708,9 +1713,9 @@ int ClientInterface::set_receiver_roi(Interface &socket) {
if (roiSize > 0) {
socket.Receive(args);
}
if (roiSize > impl()->getNumberofUDPInterfaces()) {
if (roiSize != impl()->getNumberofUDPInterfaces()) {
throw RuntimeError("Invalid number of ROIs received: " +
std::to_string(roiSize) + ". Max: " +
std::to_string(roiSize) + ". Expected: " +
std::to_string(impl()->getNumberofUDPInterfaces()));
}
if (detType == CHIPTESTBOARD || detType == XILINX_CHIPTESTBOARD)
@ -1730,6 +1735,10 @@ int ClientInterface::set_receiver_roi(Interface &socket) {
int ClientInterface::set_receiver_roi_metadata(Interface &socket) {
auto roiSize = socket.Receive<int>();
LOG(logDEBUG1) << "Number of ReceiverROI metadata: " << roiSize;
if (roiSize < 1) {
throw RuntimeError("Invalid number of ROIs received: " +
std::to_string(roiSize) + ". Min: 1.");
}
std::vector<ROI> rois(roiSize);
if (roiSize > 0) {
socket.Receive(rois);

8
slsReceiverSoftware/src/DataProcessor.cpp
View File

@ -208,10 +208,10 @@ std::string DataProcessor::CreateVirtualFile(
const int modulePos, const int numModX, const int numModY,
std::mutex *hdf5LibMutex) {
if (!multiRoiMetadata.empty() && generalData->dynamicRange == 4) {
/*if (!multiRoiMetadata.empty() && generalData->dynamicRange == 4) {
throw std::runtime_error("Skipping virtual hdf5 file since rx_roi is "
"enabled in 4 bit mode.");
}
}*/
bool gotthard25um = ((generalData->detType == GOTTHARD ||
generalData->detType == GOTTHARD2) &&
@ -240,10 +240,10 @@ void DataProcessor::LinkFileInMaster(const std::string &masterFileName,
const bool silentMode,
std::mutex *hdf5LibMutex) {
if (!multiRoiMetadata.empty()) {
/*if (!multiRoiMetadata.empty()) {
throw std::runtime_error(
"Should not be here, roi with hdf5 virtual should throw.");
}
}*/
std::string fname{virtualFileName}, masterfname{masterFileName};
// if no virtual file, link data file
if (virtualFileName.empty()) {

44
slsReceiverSoftware/src/Implementation.cpp
View File

@ -184,7 +184,7 @@ void Implementation::SetupListener(int i) {
listener[i]->SetUdpPortNumber(udpPortNum[i]);
listener[i]->SetEthernetInterface(eth[i]);
listener[i]->SetActivate(activated);
listener[i]->SetIsOutsideRoi(i >= (int)portRois.size());
listener[i]->SetIsOutsideRoi(portRois[i].noRoi());
listener[i]->SetDetectorDatastream(detectorDataStream[i]);
listener[i]->SetSilentMode(silentMode);
}
@ -194,12 +194,7 @@ void Implementation::SetupDataProcessor(int i) {
dataProcessor[i]->SetGeneralData(generalData);
dataProcessor[i]->SetUdpPortNumber(udpPortNum[i]);
dataProcessor[i]->SetActivate(activated);
if (i >= (int)portRois.size()) {
ROI roi{0, 0, 0, 0};
dataProcessor[i]->SetPortROI(roi);
} else {
dataProcessor[i]->SetPortROI(portRois[i]);
}
dataProcessor[i]->SetPortROI(portRois[i]);
if (i == 0)
dataProcessor[0]->setMultiROIMetadata(multiRoiMetadata);
dataProcessor[i]->SetDataStreamEnable(dataStreamEnable);
@ -223,12 +218,7 @@ void Implementation::SetupDataStreamer(int i) {
dataStreamer[i]->SetFlipRows(flipRows);
dataStreamer[i]->SetNumberofPorts(numPorts);
dataStreamer[i]->SetNumberofTotalFrames(numberOfTotalFrames);
if (i >= (int)portRois.size()) {
ROI roi{0, 0, 0, 0};
dataStreamer[i]->SetPortROI(roi);
} else {
dataStreamer[i]->SetPortROI(portRois[i]);
}
dataStreamer[i]->SetPortROI(portRois[i]);
}
slsDetectorDefs::xy Implementation::getDetectorSize() const {
@ -415,24 +405,14 @@ void Implementation::setPortROIs(const std::vector<defs::ROI> &args) {
portRois = args;
for (size_t i = 0; i != listener.size(); ++i)
listener[i]->SetIsOutsideRoi(i >= portRois.size());
listener[i]->SetIsOutsideRoi(portRois[i].noRoi());
for (size_t i = 0; i != dataProcessor.size(); ++i) {
if (i >= portRois.size()) {
ROI roi{0, 0, 0, 0};
dataProcessor[i]->SetPortROI(roi);
} else {
dataProcessor[i]->SetPortROI(portRois[i]);
}
dataProcessor[i]->SetPortROI(portRois[i]);
}
if (dataProcessor.size() > 0)
dataProcessor[0]->setMultiROIMetadata(multiRoiMetadata);
for (size_t i = 0; i != dataStreamer.size(); ++i) {
if (i >= portRois.size()) {
ROI roi{0, 0, 0, 0};
dataStreamer[i]->SetPortROI(roi);
} else {
dataStreamer[i]->SetPortROI(portRois[i]);
}
dataStreamer[i]->SetPortROI(portRois[i]);
}
LOG(logINFO) << "Rois (per port): " << ToString(portRois);
}
@ -737,7 +717,7 @@ void Implementation::stopReceiver() {
} else if (!detectorDataStream[i]) {
summary = (i == 0 ? "\n\tDeactivated Left Port"
: "\n\tDeactivated Right Port");
} else if (i >= (int)portRois.size()) {
} else if (portRois[i].noRoi()) {
summary = "\n\tNo Roi on Port[" + std::to_string(i) + ']';
} else {
std::ostringstream os;
@ -909,7 +889,8 @@ void Implementation::StartMasterWriter() {
masterAttributes.scanParams = scanParams;
masterAttributes.totalFrames = numberOfTotalFrames;
// complete ROI (for each port TODO?)
if (multiRoiMetadata.empty()) {
if (multiRoiMetadata.size() == 1 &&
multiRoiMetadata[0].completeRoi()) {
int nTotalPixelsX = (generalData->nPixelsX * numPorts.x);
int nTotalPixelsY = (generalData->nPixelsY * numPorts.y);
if (nTotalPixelsY == 1) {
@ -1049,8 +1030,13 @@ void Implementation::setNumberofUDPInterfaces(const int n) {
// fifo
SetupFifoStructure();
// roi cleared - complete detector
std::vector<ROI> rois(n);
std::vector<ROI> multiRoi(1);
// recalculate port rois booleans for listener, processor and streamer
setPortROIs(portRois);
setPortROIs(rois);
setMultiROIMetadata(multiRoi);
// create threads
for (int i = 0; i < generalData->numUDPInterfaces; ++i) {

4
slsReceiverSoftware/src/Implementation.h
View File

@ -307,8 +307,8 @@ class Implementation : private virtual slsDetectorDefs {
bool framePadding{true};
pid_t parentThreadId;
pid_t tcpThreadId;
std::vector<ROI> portRois{};
std::vector<ROI> multiRoiMetadata{};
std::vector<slsDetectorDefs::ROI> portRois{1};
std::vector<slsDetectorDefs::ROI> multiRoiMetadata{1};
// file parameters
fileFormat fileFormatType{BINARY};

253
slsReceiverSoftware/src/MasterFileUtility.cpp
View File

@ -208,150 +208,149 @@ std::string CreateVirtualHDF5File(
attribute.write(H5::PredType::NATIVE_DOUBLE, &dValue);
// complete detector in roi
if (multiRoi.empty()) {
int ny = nPixelsY * numModY;
int nx = nPixelsX * numModX;
if (nPixelsY == 1) {
multiRoi.push_back(defs::ROI{0, nx - 1});
} else {
multiRoi.push_back(defs::ROI{0, nx - 1, 0, ny - 1});
}
/*if (multiRoi.empty()) {
int ny = nPixelsY * numModY;
int nx = nPixelsX * numModX;
if (nPixelsY == 1) {
multiRoi.push_back(defs::ROI{0, nx - 1});
} else {
multiRoi.push_back(defs::ROI{0, nx - 1, 0, ny - 1});
}
}*/
// for (size_t iRoi = 0; iRoi != multiRoi.size(); ++iRoi) {
// dataspace
hsize_t vdsDims[DATA_RANK] = {numImagesCaught, numModY * nDimy,
numModZ * nDimz};
hsize_t vdsDimsPara[VDS_PARA_RANK] = {numImagesCaught,
numModY * numModZ};
H5::DataSpace vdsDataSpace(DATA_RANK, vdsDims, nullptr);
H5::DataSpace vdsDataSpacePara(VDS_PARA_RANK, vdsDimsPara, nullptr);
// property list
H5::DSetCreatPropList plist;
uint64_t fill_value = -1;
plist.setFillValue(dataType, &fill_value);
std::vector<H5::DSetCreatPropList> plistPara(paraSize);
// ignoring last fill (string)
for (unsigned int i = 0; i != plistPara.size() - 1; ++i) {
plistPara[i].setFillValue(parameterDataTypes[i], &fill_value);
}
for (size_t iRoi = 0; iRoi != multiRoi.size(); ++iRoi) {
// hyperslab (files)
int numFiles = numImagesCaught / maxFramesPerFile;
if (numImagesCaught % maxFramesPerFile)
++numFiles;
uint64_t framesSaved = 0;
for (int iFile = 0; iFile < numFiles; ++iFile) {
// dataspace
hsize_t vdsDims[DATA_RANK] = {numImagesCaught, numModY * nDimy,
numModZ * nDimz};
hsize_t vdsDimsPara[VDS_PARA_RANK] = {numImagesCaught,
numModY * numModZ};
H5::DataSpace vdsDataSpace(DATA_RANK, vdsDims, nullptr);
H5::DataSpace vdsDataSpacePara(VDS_PARA_RANK, vdsDimsPara, nullptr);
uint64_t nDimx =
((numImagesCaught - framesSaved) > maxFramesPerFile)
? maxFramesPerFile
: (numImagesCaught - framesSaved);
// property list
H5::DSetCreatPropList plist;
uint64_t fill_value = -1;
plist.setFillValue(dataType, &fill_value);
std::vector<H5::DSetCreatPropList> plistPara(paraSize);
// ignoring last fill (string)
for (unsigned int i = 0; i != plistPara.size() - 1; ++i) {
plistPara[i].setFillValue(parameterDataTypes[i], &fill_value);
hsize_t startLocation[DATA_RANK] = {framesSaved, 0, 0};
hsize_t strideBetweenBlocks[DATA_RANK] = {1, 1, 1};
hsize_t numBlocks[DATA_RANK] = {nDimx, nDimy, nDimz};
hsize_t blockSize[DATA_RANK] = {1, 1, 1};
hsize_t startLocationPara[VDS_PARA_RANK] = {framesSaved, 0};
hsize_t strideBetweenBlocksPara[VDS_PARA_RANK] = {1, 1};
hsize_t numBlocksPara[VDS_PARA_RANK] = {nDimx, 1};
hsize_t blockSizePara[VDS_PARA_RANK] = {1, 1};
// interleaving for g2
if (gotthard25um) {
strideBetweenBlocks[2] = 2;
}
// hyperslab (files)
int numFiles = numImagesCaught / maxFramesPerFile;
if (numImagesCaught % maxFramesPerFile)
++numFiles;
uint64_t framesSaved = 0;
for (int iFile = 0; iFile < numFiles; ++iFile) {
for (unsigned int iReadout = 0; iReadout < numModY * numModZ;
++iReadout) {
uint64_t nDimx =
((numImagesCaught - framesSaved) > maxFramesPerFile)
? maxFramesPerFile
: (numImagesCaught - framesSaved);
hsize_t startLocation[DATA_RANK] = {framesSaved, 0, 0};
hsize_t strideBetweenBlocks[DATA_RANK] = {1, 1, 1};
hsize_t numBlocks[DATA_RANK] = {nDimx, nDimy, nDimz};
hsize_t blockSize[DATA_RANK] = {1, 1, 1};
hsize_t startLocationPara[VDS_PARA_RANK] = {framesSaved, 0};
hsize_t strideBetweenBlocksPara[VDS_PARA_RANK] = {1, 1};
hsize_t numBlocksPara[VDS_PARA_RANK] = {nDimx, 1};
hsize_t blockSizePara[VDS_PARA_RANK] = {1, 1};
// interleaving for g2
// interleaving for g2 (startLocation is 0 and 1)
if (gotthard25um) {
strideBetweenBlocks[2] = 2;
startLocation[2] = iReadout;
}
for (unsigned int iReadout = 0; iReadout < numModY * numModZ;
++iReadout) {
vdsDataSpace.selectHyperslab(H5S_SELECT_SET, numBlocks,
startLocation, strideBetweenBlocks,
blockSize);
// interleaving for g2 (startLocation is 0 and 1)
if (gotthard25um) {
startLocation[2] = iReadout;
}
vdsDataSpacePara.selectHyperslab(
H5S_SELECT_SET, numBlocksPara, startLocationPara,
strideBetweenBlocksPara, blockSizePara);
vdsDataSpace.selectHyperslab(
H5S_SELECT_SET, numBlocks, startLocation,
strideBetweenBlocks, blockSize);
// source file name
std::ostringstream os;
os << filePath << "/" << fileNamePrefix << "_d"
<< (modulePos * numUnitsPerReadout + iReadout) << "_f"
<< iFile << '_' << fileIndex << ".h5";
std::string srcFileName = os.str();
LOG(logDEBUG1) << srcFileName;
vdsDataSpacePara.selectHyperslab(
H5S_SELECT_SET, numBlocksPara, startLocationPara,
strideBetweenBlocksPara, blockSizePara);
// source file name
std::ostringstream os;
os << filePath << "/" << fileNamePrefix << "_d"
<< (modulePos * numUnitsPerReadout + iReadout) << "_f"
<< iFile << '_' << fileIndex << ".h5";
std::string srcFileName = os.str();
LOG(logDEBUG1) << srcFileName;
// find relative path
std::string relative_srcFileName = srcFileName;
{
size_t p = srcFileName.rfind('/', srcFileName.length());
if (p != std::string::npos)
relative_srcFileName = (srcFileName.substr(
p + 1, srcFileName.length() - p));
}
// source dataspace
hsize_t srcDims[DATA_RANK] = {nDimx, nDimy, nDimz};
hsize_t srcDimsMax[DATA_RANK] = {H5S_UNLIMITED, nDimy,
nDimz};
H5::DataSpace srcDataSpace(DATA_RANK, srcDims, srcDimsMax);
hsize_t srcDimsPara[PARA_RANK] = {nDimx};
hsize_t srcDimsMaxPara[PARA_RANK] = {H5S_UNLIMITED};
H5::DataSpace srcDataSpacePara(PARA_RANK, srcDimsPara,
srcDimsMaxPara);
// temporary fixfor corner case bug:
// (framescaught not multiple of framesperfile,
// virtual parameter datasets error loading (bad scalar
// value))
if (nDimx != maxFramesPerFile) {
hsize_t count[1] = {nDimx};
hsize_t start[1] = {0};
srcDataSpacePara.selectHyperslab(
H5S_SELECT_SET, count, start,
strideBetweenBlocksPara, blockSizePara);
}
// mapping of property list
plist.setVirtual(vdsDataSpace, relative_srcFileName.c_str(),
DATASET_NAME, srcDataSpace);
for (unsigned int p = 0; p < paraSize; ++p) {
plistPara[p].setVirtual(
vdsDataSpacePara, relative_srcFileName.c_str(),
parameterNames[p].c_str(), srcDataSpacePara);
}
// H5Sclose(srcDataspace);
// H5Sclose(srcDataspace_para);
if (!gotthard25um) {
startLocation[2] += nDimz;
if (startLocation[2] >= (numModZ * nDimz)) {
startLocation[2] = 0;
startLocation[1] += nDimy;
}
}
++startLocationPara[1];
// find relative path
std::string relative_srcFileName = srcFileName;
{
size_t p = srcFileName.rfind('/', srcFileName.length());
if (p != std::string::npos)
relative_srcFileName = (srcFileName.substr(
p + 1, srcFileName.length() - p));
}
framesSaved += nDimx;
}
// datasets
H5::DataSet vdsDataSet(
fd->createDataSet(DATASET_NAME, dataType, vdsDataSpace, plist));
for (unsigned int p = 0; p < paraSize; ++p) {
H5::DataSet vdsDataSetPara(fd->createDataSet(
parameterNames[p].c_str(), parameterDataTypes[p],
vdsDataSpacePara, plistPara[p]));
// source dataspace
hsize_t srcDims[DATA_RANK] = {nDimx, nDimy, nDimz};
hsize_t srcDimsMax[DATA_RANK] = {H5S_UNLIMITED, nDimy, nDimz};
H5::DataSpace srcDataSpace(DATA_RANK, srcDims, srcDimsMax);
hsize_t srcDimsPara[PARA_RANK] = {nDimx};
hsize_t srcDimsMaxPara[PARA_RANK] = {H5S_UNLIMITED};
H5::DataSpace srcDataSpacePara(PARA_RANK, srcDimsPara,
srcDimsMaxPara);
// temporary fixfor corner case bug:
// (framescaught not multiple of framesperfile,
// virtual parameter datasets error loading (bad scalar
// value))
if (nDimx != maxFramesPerFile) {
hsize_t count[1] = {nDimx};
hsize_t start[1] = {0};
srcDataSpacePara.selectHyperslab(
H5S_SELECT_SET, count, start, strideBetweenBlocksPara,
blockSizePara);
}
// mapping of property list
plist.setVirtual(vdsDataSpace, relative_srcFileName.c_str(),
DATASET_NAME, srcDataSpace);
for (unsigned int p = 0; p < paraSize; ++p) {
plistPara[p].setVirtual(
vdsDataSpacePara, relative_srcFileName.c_str(),
parameterNames[p].c_str(), srcDataSpacePara);
}
// H5Sclose(srcDataspace);
// H5Sclose(srcDataspace_para);
if (!gotthard25um) {
startLocation[2] += nDimz;
if (startLocation[2] >= (numModZ * nDimz)) {
startLocation[2] = 0;
startLocation[1] += nDimy;
}
}
++startLocationPara[1];
}
framesSaved += nDimx;
}
// datasets
H5::DataSet vdsDataSet(
fd->createDataSet(DATASET_NAME, dataType, vdsDataSpace, plist));
for (unsigned int p = 0; p < paraSize; ++p) {
H5::DataSet vdsDataSetPara(fd->createDataSet(
parameterNames[p].c_str(), parameterDataTypes[p],
vdsDataSpacePara, plistPara[p]));
}
//}
fd->close();
} catch (const H5::Exception &error) {