From 1bf7b4a6a180f90c3cda0608eec127e9e0777412 Mon Sep 17 00:00:00 2001
From: Anna Bergamaschi <anna.bergamaschi@psi.ch>
Date: Wed, 6 Dec 2017 09:10:13 +0100
Subject: [PATCH] directory restuctured

---
 slsDetectorCalibration/IntMap.h               |  113 -
 slsDetectorCalibration/PlotGifs.C             |  194 -
 slsDetectorCalibration/analogDetector.h       |  395 ++-
 .../Mythen3_01_jctbData.h                     |    0
 .../{ => dataStructures}/adcSar2_jctbData.h   |    0
 .../{ => dataStructures}/chiptestBoardData.h  |    0
 .../eigerHalfModuleData.h                     |    0
 .../{ => dataStructures}/gotthardModuleData.h |    0
 .../gotthardShortModuleData.h                 |    0
 .../{ => dataStructures}/jungfrau02Data.h     |    0
 .../jungfrau10ModuleData.h                    |    0
 .../moench02Ctb10GbData.h                     |    0
 .../{ => dataStructures}/moench02CtbData.h    |    0
 .../{ => dataStructures}/moench02ModuleData.h |    0
 .../moench03Ctb10GbData.h                     |    0
 .../moench03Ctb10GbT1Data.h                   |    0
 .../{ => dataStructures}/moench03CtbData.h    |    0
 .../{ => dataStructures}/moench03T1CtbData.h  |    0
 .../dataStructures/moench03T1ReceiverData.h   |  285 ++
 .../{ => dataStructures}/moench03T1ZmqData.h  |    0
 .../dataStructures/moench03T1ZmqDataNew.h     |  268 ++
 .../moench03TCtb10GbData.h                    |    0
 .../{ => dataStructures}/moench03TCtbData.h   |    0
 slsDetectorCalibration/demoCreateTree.C       |   31 -
 slsDetectorCalibration/etaVEL/imageMacro.C    |  457 ---
 slsDetectorCalibration/etaVEL/imageMacroG2D.C |  185 -
 .../etaVEL/imageMacroSample.C                 |  173 -
 .../etaVEL/interpolationMacro.C               | 3109 -----------------
 slsDetectorCalibration/gMapDemo.C             |   11 -
 slsDetectorCalibration/gainMap.C              |  228 --
 .../interpolations/.__afs3A48                 |  Bin 0 -> 48795 bytes
 .../etaInterpolationBase.h                    |  101 +-
 .../etaInterpolationGlobal.h                  |    0
 .../etaInterpolationPosXY.h                   |   30 +-
 .../{ => interpolations}/etaVEL/EVELAlg.C     |    0
 .../{ => interpolations}/etaVEL/EtaVEL.cpp    |    0
 .../{ => interpolations}/etaVEL/EtaVEL.h      |    0
 .../{ => interpolations}/etaVEL/EtaVELTr.py   |    0
 .../etaVEL/interpolation_etaVEL.cpp           |    0
 .../interpolation_EtaVEL.h                    |    0
 .../linearInterpolation.h                     |   12 +-
 .../noInterpolation.h                         |    8 +-
 .../slsInterpolation.h                        |    5 +-
 slsDetectorCalibration/jungfrauReadData.C     |  264 --
 slsDetectorCalibration/makefile               |   10 -
 slsDetectorCalibration/moench03ReadData.C     | 1117 ------
 slsDetectorCalibration/moench03ReadData10Gb.C |  496 ---
 .../moenchExecutables/Makefile.cluster_finder |   33 +
 .../{ => moenchExecutables}/Makefile.moench   |    0
 .../Makefile.moench_eta                       |   13 +-
 .../Makefile.moench_zmq                       |    0
 .../moenchExecutables/Makefile.phoenix        |   30 +
 .../moenchExecutables/Makefile.tiff_to_th2f   |   25 +
 .../moench03ClusterFinder.cpp                 |  255 ++
 .../moench03ClusterFinderPhoenix.cpp          |  192 +
 .../moench03Interpolation.cpp                 |  171 +
 .../moenchExecutables/moench03MakeEta.cpp     |   62 +
 .../moench03NoInterpolation.cpp               |  171 +
 .../moench03OnTheFlyAnalysis.C                |    0
 .../moenchExecutables/moench03ZmqOnTheFly.cpp |  272 ++
 .../moench03ZmqOnTheFlyEta.cpp                |  306 ++
 .../moench03ZmqOnTheFlyInterpolating.cpp      |  251 ++
 .../moench03ZmqOnTheFlyInterpolation.cpp      |  219 ++
 .../moench03ZmqOnTheFlySinglePhoton.cpp       |  248 ++
 .../moenchExecutables/readClusters.C          |  209 ++
 .../moenchExecutables/tiff_to_th2f.cpp        |   57 +
 slsDetectorCalibration/moenchMakeTree.C       |  244 --
 slsDetectorCalibration/moenchReadData.C       |  238 --
 slsDetectorCalibration/moenchReadDataMT.C     |   52 -
 .../multiThreadedAnalogDetector.h             |  572 +++
 .../multiThreadedDetector.h                   |  459 ---
 slsDetectorCalibration/raedNoiseData.C        |  136 -
 slsDetectorCalibration/readJungfrauData.C     |   31 -
 slsDetectorCalibration/readMoench03Data.C     |  366 --
 slsDetectorCalibration/singlePhotonDetector.h |  225 +-
 slsDetectorCalibration/single_photon_hit.h    |   31 +-
 .../slsDetectorCalibration.doxy               |   18 +-
 slsDetectorCalibration/viewMoenchDRXRays.C    |  178 -
 78 files changed, 4212 insertions(+), 8344 deletions(-)
 delete mode 100644 slsDetectorCalibration/IntMap.h
 delete mode 100644 slsDetectorCalibration/PlotGifs.C
 rename slsDetectorCalibration/{ => dataStructures}/Mythen3_01_jctbData.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/adcSar2_jctbData.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/chiptestBoardData.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/eigerHalfModuleData.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/gotthardModuleData.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/gotthardShortModuleData.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/jungfrau02Data.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/jungfrau10ModuleData.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/moench02Ctb10GbData.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/moench02CtbData.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/moench02ModuleData.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/moench03Ctb10GbData.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/moench03Ctb10GbT1Data.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/moench03CtbData.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/moench03T1CtbData.h (100%)
 create mode 100644 slsDetectorCalibration/dataStructures/moench03T1ReceiverData.h
 rename slsDetectorCalibration/{ => dataStructures}/moench03T1ZmqData.h (100%)
 create mode 100644 slsDetectorCalibration/dataStructures/moench03T1ZmqDataNew.h
 rename slsDetectorCalibration/{ => dataStructures}/moench03TCtb10GbData.h (100%)
 rename slsDetectorCalibration/{ => dataStructures}/moench03TCtbData.h (100%)
 delete mode 100644 slsDetectorCalibration/demoCreateTree.C
 delete mode 100644 slsDetectorCalibration/etaVEL/imageMacro.C
 delete mode 100644 slsDetectorCalibration/etaVEL/imageMacroG2D.C
 delete mode 100644 slsDetectorCalibration/etaVEL/imageMacroSample.C
 delete mode 100644 slsDetectorCalibration/etaVEL/interpolationMacro.C
 delete mode 100644 slsDetectorCalibration/gMapDemo.C
 delete mode 100644 slsDetectorCalibration/gainMap.C
 create mode 100755 slsDetectorCalibration/interpolations/.__afs3A48
 rename slsDetectorCalibration/{etaVEL => interpolations}/etaInterpolationBase.h (85%)
 rename slsDetectorCalibration/{etaVEL => interpolations}/etaInterpolationGlobal.h (100%)
 rename slsDetectorCalibration/{etaVEL => interpolations}/etaInterpolationPosXY.h (73%)
 rename slsDetectorCalibration/{ => interpolations}/etaVEL/EVELAlg.C (100%)
 rename slsDetectorCalibration/{ => interpolations}/etaVEL/EtaVEL.cpp (100%)
 rename slsDetectorCalibration/{ => interpolations}/etaVEL/EtaVEL.h (100%)
 rename slsDetectorCalibration/{ => interpolations}/etaVEL/EtaVELTr.py (100%)
 rename slsDetectorCalibration/{ => interpolations}/etaVEL/interpolation_etaVEL.cpp (100%)
 rename slsDetectorCalibration/{etaVEL => interpolations}/interpolation_EtaVEL.h (100%)
 rename slsDetectorCalibration/{etaVEL => interpolations}/linearInterpolation.h (96%)
 rename slsDetectorCalibration/{etaVEL => interpolations}/noInterpolation.h (90%)
 rename slsDetectorCalibration/{etaVEL => interpolations}/slsInterpolation.h (98%)
 delete mode 100644 slsDetectorCalibration/jungfrauReadData.C
 delete mode 100644 slsDetectorCalibration/makefile
 delete mode 100644 slsDetectorCalibration/moench03ReadData.C
 delete mode 100644 slsDetectorCalibration/moench03ReadData10Gb.C
 create mode 100644 slsDetectorCalibration/moenchExecutables/Makefile.cluster_finder
 rename slsDetectorCalibration/{ => moenchExecutables}/Makefile.moench (100%)
 rename slsDetectorCalibration/{ => moenchExecutables}/Makefile.moench_eta (54%)
 rename slsDetectorCalibration/{ => moenchExecutables}/Makefile.moench_zmq (100%)
 create mode 100644 slsDetectorCalibration/moenchExecutables/Makefile.phoenix
 create mode 100644 slsDetectorCalibration/moenchExecutables/Makefile.tiff_to_th2f
 create mode 100644 slsDetectorCalibration/moenchExecutables/moench03ClusterFinder.cpp
 create mode 100644 slsDetectorCalibration/moenchExecutables/moench03ClusterFinderPhoenix.cpp
 create mode 100644 slsDetectorCalibration/moenchExecutables/moench03Interpolation.cpp
 create mode 100644 slsDetectorCalibration/moenchExecutables/moench03MakeEta.cpp
 create mode 100644 slsDetectorCalibration/moenchExecutables/moench03NoInterpolation.cpp
 rename slsDetectorCalibration/{ => moenchExecutables}/moench03OnTheFlyAnalysis.C (100%)
 create mode 100644 slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFly.cpp
 create mode 100644 slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlyEta.cpp
 create mode 100644 slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlyInterpolating.cpp
 create mode 100644 slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlyInterpolation.cpp
 create mode 100644 slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlySinglePhoton.cpp
 create mode 100644 slsDetectorCalibration/moenchExecutables/readClusters.C
 create mode 100644 slsDetectorCalibration/moenchExecutables/tiff_to_th2f.cpp
 delete mode 100644 slsDetectorCalibration/moenchMakeTree.C
 delete mode 100644 slsDetectorCalibration/moenchReadData.C
 delete mode 100644 slsDetectorCalibration/moenchReadDataMT.C
 create mode 100644 slsDetectorCalibration/multiThreadedAnalogDetector.h
 delete mode 100644 slsDetectorCalibration/multiThreadedDetector.h
 delete mode 100644 slsDetectorCalibration/raedNoiseData.C
 delete mode 100644 slsDetectorCalibration/readJungfrauData.C
 delete mode 100644 slsDetectorCalibration/readMoench03Data.C
 delete mode 100644 slsDetectorCalibration/viewMoenchDRXRays.C

diff --git a/slsDetectorCalibration/IntMap.h b/slsDetectorCalibration/IntMap.h
deleted file mode 100644
index 253ee95e5..000000000
--- a/slsDetectorCalibration/IntMap.h
+++ /dev/null
@@ -1,113 +0,0 @@
-#ifndef INTMAP_H
-#define INTMAP_H
-#define N 60
-#include <stdio.h>
-#include <math.h>
-
-
-
-
-class IntMap{
-
-
- public:
-
-  IntMap(){};
-
-  ~IntMap(){};
-
-  void Init(){
-    //lookup table of the output intensity for IR laser
-    //measurements performed by Dominic april 2014
-    //intensity[59]=intensity with 0 Optical Density
-    //intensity[0]=intensity with 5.9 Optical Density
-    intensity[0]=29;//5.9
-    intensity[1]=21;//5.8
-    intensity[2]=31;//5.7
-    intensity[3]=43;//5.6
-    intensity[4]=60;//5.5
-    intensity[5]=91;//5.4
-    intensity[6]=69;//5.3
-    intensity[7]=102;//5.2
-    intensity[8]=136;//5.1
-    intensity[9]=196;//5.0
-    intensity[10]=425;//4.9
-    intensity[11]=311;//4.8
-    intensity[12]=462;//4.7
-    intensity[13]=653;//4.6
-    intensity[14]=926;//4.5
-    intensity[15]=1423;//4.4
-    intensity[16]=1072;//4.3
-    intensity[17]=1592;//4.2
-    intensity[18]=2142;//4.1
-    intensity[19]=3085;//4.0
-    intensity[20]=729;//3.9
-    intensity[21]=533;//3.8
-    intensity[22]=793;//3.7
-    intensity[23]=1121;//3.6
-    intensity[24]=1588;//3.5
-    intensity[25]=2439;//3.4
-    intensity[26]=1842;//3.3
-    intensity[27]=2730;//3.2
-    intensity[28]=3663;//3.1
-    intensity[29]=5271;//3.0
-    intensity[30]=8102;//2.9
-    intensity[31]=5933;//2.8
-    intensity[32]=8789;//2.7
-    intensity[33]=12350;//2.6
-    intensity[34]=17358;//2.5
-    intensity[35]=26300;//2.4
-    intensity[36]=20029;//2.3
-    intensity[37]=29414;//2.2
-    intensity[38]=39202;//2.1
-    intensity[39]=55724;//2.0
-    intensity[40]=15697;//1.9
-    intensity[41]=11541;//1.8
-    intensity[42]=16976;//1.7
-    intensity[43]=23866;//1.6
-    intensity[44]=33478;//1.5
-    intensity[45]=50567;//1.4
-    intensity[46]=38552;//1.3
-    intensity[47]=56394;//1.2
-    intensity[48]=74897;//1.1
-    intensity[49]=106023;//1.0
-    intensity[50]=157384;//0.9
-    intensity[51]=117677;//0.8
-    intensity[52]=171101;//0.7
-    intensity[53]=236386;//0.6
-    intensity[54]=327248;//0.5
-    intensity[55]=492781;//0.4
-    intensity[56]=379641;//0.3
-    intensity[57]=546927;//0.2
-    intensity[58]=717203;//0.1
-    intensity[59]=1000000;//0.
-    return;
-  };
-    //_od is the total Optical Density
-  int getIntensity(float _od){
-    int _int(-1);
-
-    //these lines are to take into account rounding errors with floats
-    float hun_od = 100.*_od;
-    int Ihun_od = (int)round(hun_od); 
-    float R_od =(float) Ihun_od/10.;
-    int I_od = (int)R_od;
-
-    if(I_od >-1 && I_od <60){
-      int index=59-I_od;
-      cerr<<index<<endl;
-      _int=intensity[index];
-    }else{
-      cerr<<"Optical density out of range!"<<endl;
-    }
-    return _int;
-  };
-
-
- private:
-
-  int intensity[N];
-
-};
-
-#endif
diff --git a/slsDetectorCalibration/PlotGifs.C b/slsDetectorCalibration/PlotGifs.C
deleted file mode 100644
index 97c5ea713..000000000
--- a/slsDetectorCalibration/PlotGifs.C
+++ /dev/null
@@ -1,194 +0,0 @@
-#include "moench03ReadData.C"
-
-
-
-/************************************************************************/
-TH2F *readExactImage(char *fname, int iframe=0, int frperfile,TH2F *hped=NULL) {
-  ifstream filebin;
-  filebin.open((const char *)(fname), ios::in | ios::binary);
-  TH2F *h2=new TH2F("h2","",400,0,400,400,0,400);
-  int framen(0);
-  moench03CtbData *decoder=new moench03CtbData();
-  char *buff=decoder->readNextFrame(filebin);
-  framen=decoder->getFrameNumber(buff);
-
-  int counter(0);
-
-  while(framen<iframe && counter<frperfile){
-   buff=decoder->readNextFrame(filebin);
-   framen=decoder->getFrameNumber(buff);
-   cerr<<"...";
-   if(framen%1000==0) cerr<<framen;
-   counter++;
-  }
-  if(counter<frperfile){
-    h2->SetName(Form("frame_%d",framen));
-    h2->SetTitle(Form("frame_%d",framen));
-    cout << "==" << endl;
-    for (int ix=0; ix<400; ix++) {
-      for (int iy=0; iy<400; iy++) {
-	//	cout <<  decoder->getDataSize() << " " << decoder->getValue(buff,ix,iy)<< endl;
-	h2->SetBinContent(ix+1,iy+1,decoder->getValue(buff,ix,iy));
-	//	h1->SetBinContent(++ip,decoder->getValue(buff,ix,iy));
-      }
-    }
-    if (hped) h2->Add(hped,-1);
-
-  }else{
-    cerr<<"frame number not found"<<endl;
-  }
-
-  return h2;
-
-
-}
-
-/************************************************************/
-//fnamein filename: ..._f0_%d.raw
-//runmin, runmax to calculate pedestals
-//framen0, framen1 first and last frame you want to add to the gif
-//frperfile number of frames per file
-void PlotRawFrameGif(char * fnamein, int runmin, int runmax, int framen0,int framen1, int frperfile){
-  cerr<<"/***********************************/"<<endl;
-  cerr<<"calculating pedestals"<<endl;
-
-  TH2F * hp = calcPedestal(fnamein,runmin,runmax);
-  int filen = (int)(framen0/frperfile);
-  char  fname[1000];
-  sprintf(fname,fnamein,filen);
-  cerr<<"/***********************************/"<<endl;
-  cerr<<"retrieving frame from"<<fname<<endl;
-  
-  int fileframe0 = framen0%frperfile;
-  int fileframe1 = framen1%frperfile;
-
-  TImage * img = NULL;
-  TH2F * hf = NULL;
-  TCanvas * c1 =NULL; 
-  for(int fileframe=fileframe0; fileframe<fileframe1; fileframe++){
-    hf=readExactImage(fname, fileframe,frperfile,hp);
-    delete img;
-    delete c1;
-    c1 = new TCanvas("c1","",800,600); 
-    c1->cd();
-    
-    hf->SetTitle(Form("Frame_%d",fileframe+framen0));
-    hf->SetName(Form("Frame_%d",fileframe+framen0));
-    hf->GetXaxis()->SetRangeUser(0,50);
-    hf->GetXaxis()->SetTitle("Column");
-    hf->GetYaxis()->SetRangeUser(240,290);
-    hf->GetYaxis()->SetTitle("Row");
-    hf->GetZaxis()->SetRangeUser(-50.,1300.);
-    hf->SetStats(kFALSE);
-    // c1->SetLogz();
-    hf->Draw("colz");
-    c1->Print(Form("/afs/psi/project/mythen/Marco/Pics/Fe_Raw3_%d.png",fileframe));
-    img = TImage::Open(Form("/afs/psi/project/mythen/Marco/Pics/Fe_Raw3_%d.png",fileframe));
-    if(fileframe<fileframe1-1){
-      img->WriteImage(Form("/afs/psi/project/mythen/Marco/Pics/Fe_Raw3_%d.gif+200",fileframe1-fileframe0));
-    }else{
-      img->WriteImage(Form("/afs/psi/project/mythen/Marco/Pics/Fe_Raw3_%d.gif++200++",fileframe1-fileframe0));
-    }
-  }
-  return;
-
-}
-/*********************************************************************/
-TProfile2D * GetHitMap(TTree * treein, int framen,double zlow, double zup){
-  TProfile2D* map = new TProfile2D("map","",400,-0.5,399.5,400,-0.5,399.5,zlow,zup);
-
-
-  int x, y, iFrame;
-  double data[9];
-
-  TBranch * b_x = (TBranch*)treein->GetBranch("x");
-  TBranch * b_y = (TBranch*)treein->GetBranch("y");
-  TBranch * b_data = (TBranch*)treein->GetBranch("data");
-  TBranch * b_iFrame = (TBranch*)treein->GetBranch("iFrame");
-
-  b_x->SetAddress(&x);
-  b_y->SetAddress(&y);
-  b_data->SetAddress(data);
-  b_iFrame->SetAddress(&iFrame);
-
-  Int_t nEnt=treein->GetEntries();
-
-  for(Int_t i=0; i<nEnt; i++){
-    b_iFrame->GetEntry(i);
-    if(iFrame==framen){
-      b_x->GetEntry(i);
-      b_y->GetEntry(i);
-      b_data->GetEntry(i);
-      map->SetBinEntries(map->FindFixBin(x-1,y-1),1); 
-      map->SetBinEntries(map->FindFixBin(x,y-1),1); 
-      map->SetBinEntries(map->FindFixBin(x+1,y-1),1); 
-
-      map->SetBinEntries(map->FindFixBin(x-1,y),1); 
-      map->SetBinEntries(map->FindFixBin(x,y),1);
-      map->SetBinEntries(map->FindFixBin(x+1,y),1); 
-
-      map->SetBinEntries(map->FindFixBin(x-1,y+1),1); 
-      map->SetBinEntries(map->FindFixBin(x,y+1),1); 
-      map->SetBinEntries(map->FindFixBin(x+1,y+1),1);
-
-
-      map->SetBinContent(map->FindFixBin(x-1,y-1),data[0]); 
-      map->SetBinContent(map->FindFixBin(x,y-1),data[1]); 
-      map->SetBinContent(map->FindFixBin(x+1,y-1),data[2]);
- 
-      map->SetBinContent(map->FindFixBin(x-1,y),data[3]); 
-      map->SetBinContent(map->FindFixBin(x,y),data[4]);
-      map->SetBinContent(map->FindFixBin(x+1,y),data[5]); 
-
-      map->SetBinContent(map->FindFixBin(x-1,y+1),data[6]); 
-      map->SetBinContent(map->FindFixBin(x,y+1),data[7]); 
-      map->SetBinContent(map->FindFixBin(x+1,y+1),data[8]);
-    }
-  }
-
-
-  return map;
-
-
-}
-
-/*********************************************************/
-/** creates an infinitely looping gif from clustered data
- **/
-void PlotClusterHitMapGif(std::string filename, std::string treename,int framen0,int framen1){
-
-  TFile * fin = new TFile(filename.c_str(),"read");
-  TTree * treein = (TTree*)fin->Get(treename.c_str());
-
-  TCanvas * c1 = NULL;
-
-
-  TProfile2D* hmap = NULL;
-  TImage * img = NULL;
-  for(int framen=framen0; framen<framen1; framen++){
-    delete c1;
-    c1 = new TCanvas("c1","",800,600);
-    c1->cd();
-    // c1->SetLogz();
-    hmap=GetHitMap(treein,framen,-50.,1300.);
-    hmap->SetName(Form("Frame_%d",framen));
-    hmap->SetTitle(Form("Frame_%d",framen));
-    hmap->GetXaxis()->SetRangeUser(0,50);
-    hmap->GetXaxis()->SetTitle("Column");
-    hmap->GetYaxis()->SetRangeUser(240,290);
-    hmap->GetYaxis()->SetTitle("Row");
-    hmap->GetZaxis()->SetRangeUser(-50.,1300.);
-    hmap->SetStats(kFALSE);
-    hmap->Draw("colz");
-    c1->Print(Form("/afs/psi/project/mythen/Marco/Pics/Fe_Cluster3_%d.png",framen));
-    img = TImage::Open(Form("/afs/psi/project/mythen/Marco/Pics/Fe_Cluster3_%d.png",framen));
-    if(framen<framen1-1){
-      img->WriteImage(Form("/afs/psi/project/mythen/Marco/Pics/Fe_Cluster3_%d.gif+200",framen1-framen0));
-    }else{
-      img->WriteImage(Form("/afs/psi/project/mythen/Marco/Pics/Fe_Cluster3_%d.gif++200++",framen1-framen0));
-    }
-  }
-  return;
-
-
-}
diff --git a/slsDetectorCalibration/analogDetector.h b/slsDetectorCalibration/analogDetector.h
index 9d2fad96b..f30a5b814 100644
--- a/slsDetectorCalibration/analogDetector.h
+++ b/slsDetectorCalibration/analogDetector.h
@@ -1,16 +1,21 @@
 #ifndef ANALOGDETECTOR_H
 #define  ANALOGDETECTOR_H
 
+//#include <mutex>
 
+#include <pthread.h>
 #include "slsDetectorData.h"
 #include "pedestalSubtraction.h"
 #include "commonModeSubtraction.h"
 #include "tiffIO.h"
 
+
+using namespace std;
+
 #ifndef FRAMEMODE_DEF
 #define FRAMEMODE_DEF
 /** 
-enum to define the flags of the data set, which are needed to seect the type of processing it should undergo
+enum to define the flags of the data set, which are needed to seect the type of processing it should undergo: frame, pedestal, flat
 */
  enum frameMode { eFrame, ePedestal, eFlat };
 #endif
@@ -53,10 +58,17 @@ template <class dataType> class analogDetector {
       }
     }
     image=new int[nx*ny];
-    
+    xmin=0;
+    xmax=nx;
+    ymin=0;
+    ymax=ny;
+    fMode=ePedestal;
+    thr=0;
+    myFile=NULL;
+    fm=new pthread_mutex_t ;
   };
   /**
-     destructor. Deletes the cluster structure and the pdestalSubtraction array
+     destructor. Deletes the pdestalSubtraction array and the image
   */
   virtual ~analogDetector() {for (int i=0; i<ny; i++) delete [] stat[i]; delete [] stat; delete [] image;};
 
@@ -74,6 +86,16 @@ template <class dataType> class analogDetector {
     gmap=orig->gmap;
     cmSub=orig->cmSub;
     id=orig->id;
+    xmin=orig->xmin;
+    xmax=orig->xmax;
+    ymin=orig->ymin;
+    ymax=orig->ymax;
+    thr=orig->thr;
+    // nSigma=orig->nSigma;
+    fMode=orig->fMode;
+    myFile=orig->myFile;
+    fm=orig->fm;
+    
 
     stat=new pedestalSubtraction*[ny];
     for (int i=0; i<ny; i++) {
@@ -92,8 +114,10 @@ template <class dataType> class analogDetector {
     
   }
 
+
   /**
      clone. Must be virtual!
+     \returns a clone of the original analog detector
    */
   virtual analogDetector *Clone() {
     return new analogDetector(this);
@@ -165,12 +189,13 @@ template <class dataType> class analogDetector {
     return NULL;
   }
    /**
-     wrties a 32 bit tiff file of the size of the detector and contaning the gain map value, if any. If file doesn'e exist or gainmap is undefined, does not do anything.
+     writes a 32 bit tiff file of the size of the detector and contaning the gain map value, if any. If file doesn'e exist or gainmap is undefined, does not do anything.
      \param imgname complete name of the file to be written
-     \returns NULL
+     \returns NULL if file writing didn't succeed, else a pointer
   */
   void *writeGainMap(const char * imgname) {
     float *gm=NULL;
+    void *ret;
     if (gmap)  {
       gm=new float[nx*ny];
       for (int ix=0; ix<nx; ix++) {
@@ -178,19 +203,27 @@ template <class dataType> class analogDetector {
 	  gm[iy*nx+ix]=gmap[iy*nx+ix];
 	}
       }
-      WriteToTiff(gm, imgname, ny, nx);   
+      ret=WriteToTiff(gm, imgname, ny, nx);   
       delete [] gm;
     }
-    return NULL;
+    return ret;
   }
   
   
+  /** resets the pedestalSubtraction array, the commonModeSubtraction and the image data*/
     
-  /** resets the pedestalSubtraction array and the commonModeSubtraction */
-  void newDataSet(){iframe=-1; for (int iy=0; iy<ny; iy++) for (int ix=0; ix<nx; ix++) stat[iy][ix].Clear(); if (cmSub) cmSub->Clear(); };  
+  virtual void newDataSet(){
+    iframe=-1; 
+    for (int iy=0; iy<ny; iy++) 
+      for (int ix=0; ix<nx; ix++) {
+	stat[iy][ix].Clear(); 
+	image[iy*nx+ix]=0;
+      }
+    if (cmSub) cmSub->Clear(); 
+  };  
   
-  /** resets the eventMask to undefined and the commonModeSubtraction */
-  void newFrame(){iframe++; if (cmSub) cmSub->newFrame();};
+  /** resets the commonModeSubtraction and increases the frame index */
+  virtual void newFrame(){iframe++; if (cmSub) cmSub->newFrame();};
   
 
     /** sets the commonModeSubtraction algorithm to be used 
@@ -198,6 +231,11 @@ template <class dataType> class analogDetector {
 	\returns pointer to the actual common mode subtraction algorithm
     */
     commonModeSubtraction *setCommonModeSubtraction(commonModeSubtraction *cm) {cmSub=cm; return cmSub;};
+/** 
+      gets the commonModeSubtraction algorithm to be used 
+	\returns pointer to the actual common mode subtraction algorithm
+    */
+    commonModeSubtraction *getCommonModeSubtraction() {return cmSub;};
 
 
     /**
@@ -213,6 +251,7 @@ template <class dataType> class analogDetector {
        \param val value to be added
        \param ix pixel x coordinate
        \param iy pixel y coordinate
+       \param cm 1 adds the value to common mod, 0 skips it. Defaults to 0. - not properly implemented
     */
     virtual void addToPedestal(double val, int ix, int iy=0){ 
       if (ix>=0 && ix<nx && iy>=0 && iy<ny) {
@@ -310,8 +349,8 @@ template <class dataType> class analogDetector {
     */
     virtual void setPedestal(double *ped, double *rms=NULL, int m=-1){
       double rr=0;
-      for (int ix=0; ix<nx; ix++) {
-	for (int iy=0; iy<ny; iy++) {
+      for (int ix=xmin; ix<xmax; ix++) {
+	for (int iy=ymin; iy<ymax; iy++) {
 	  if (rms) rr=rms[iy*nx+ix];
 	  stat[iy][ix].setPedestal(ped[iy*nx+ix],rr, m);
 	};
@@ -331,9 +370,16 @@ template <class dataType> class analogDetector {
     */
     virtual void setPedestalRMS(int ix, int iy, double rms=0){if (ix>=0 && ix<nx && iy>=0 && iy<ny) stat[iy][ix].setPedestalRMS(rms);};
     
+
+
+
+    /**
+       sets  pedestal rms for all pixels
+       \param rms pointer to array of pedestal rms
+    */
  virtual void setPedestalRMS(double *rms){
-      for (int ix=0; ix<nx; ix++) {
-	for (int iy=0; iy<ny; iy++) {
+      for (int ix=xmin; ix<xmax; ix++) {
+	for (int iy=ymin; iy<ymax; iy++) {
 	  stat[iy][ix].setPedestalRMS(rms[iy*nx+ix]);
 	};
       };
@@ -343,27 +389,33 @@ template <class dataType> class analogDetector {
 
 
      /**
-       sets  pedestal rms
-       \param ix pixel x coordinate
-       \param iy pixel y coordinate
-       \param rms value to set
+       write 32bit tiff file with detector image data
+       \param imgname file name to be written
+       \returns NULL if file writing didn't succed, otherwise a pointer
     */
   virtual void *writeImage(const char * imgname) {
     float *gm=NULL;
+    void *ret;
       gm=new float[nx*ny];
       for (int ix=0; ix<nx; ix++) {
 	for (int iy=0; iy<ny; iy++) {
 	    gm[iy*nx+ix]=image[iy*nx+ix];
 	}
       }
-      WriteToTiff(gm, imgname, ny, nx);   
+      ret=WriteToTiff(gm, imgname, ny, nx);   
       delete [] gm;
-      return NULL;
+      return ret;
   }
    
+       /**
+       write 32bit tiff file containing the pedestals
+       \param imgname file name to be written
+       \returns NULL if file writing didn't succed, otherwise a pointer
+    */
     
   virtual void *writePedestals(const char * imgname) {
     float *gm=NULL;
+    void *ret;
       gm=new float[nx*ny];
       for (int ix=0; ix<nx; ix++) {
 	for (int iy=0; iy<ny; iy++) {
@@ -373,11 +425,16 @@ template <class dataType> class analogDetector {
 	    gm[iy*nx+ix]=stat[iy][ix].getPedestal();
 	}
       }
-      WriteToTiff(gm, imgname, ny, nx);   
+      ret=WriteToTiff(gm, imgname, ny, nx);   
       delete [] gm;
-      return NULL;
+      return ret;
   }
   
+ /**
+      read 32bit tiff file containing the pedestals
+       \param imgname file name to be read
+       \returns 0 if file reading didn't succed, otherwise 1
+    */
   int readPedestals(const char * imgname) {
     uint32 nnx, nny;
     float *gm=ReadFromTiff( imgname, nny, nnx);
@@ -398,6 +455,11 @@ template <class dataType> class analogDetector {
     return NULL;
   }
   
+ /**
+      read 32bit tiff file containing the image data
+       \param imgname file name to be read
+       \returns 0 if file reading didn't succed, otherwise 1
+    */
   int readImage(const char * imgname) {
     uint32 nnx, nny;
     float *gm=ReadFromTiff( imgname, nny, nnx);
@@ -418,22 +480,37 @@ template <class dataType> class analogDetector {
     return NULL;
   }
   
-    
+   
+    /**
+      returns pointer to image data
+       \returns pointer to image data
+    */  
   virtual int *getImage(){return image;};
-    
+      /**
+      write 32bit tiff file containing the pedestals RMS
+       \param imgname file name to be written
+       \returns NULL if file writing didn't succed, otherwise a pointer
+    */
   void *writePedestalRMS(const char * imgname) {
     float *gm=NULL;
+    void *ret;
       gm=new float[nx*ny];
       for (int ix=0; ix<nx; ix++) {
 	for (int iy=0; iy<ny; iy++) {
 	    gm[iy*nx+ix]=stat[iy][ix].getPedestalRMS();
 	}
       }
-      WriteToTiff(gm, imgname, ny, nx);  
+      ret=WriteToTiff(gm, imgname, ny, nx);  
       delete [] gm;
-      return   NULL;
+      return ret;
     }
   
+   /**
+      read 32bit tiff file containing the pedestals RMS
+       \param imgname file name to be read
+       \returns 0 if file reading didn't succed, otherwise 1
+    */
+
   int readPedestalRMS(const char * imgname) {
     uint32 nnx, nny;
     float *gm=ReadFromTiff( imgname, nny, nnx);
@@ -455,6 +532,11 @@ template <class dataType> class analogDetector {
 
 
 
+
+  /**
+      Adds all the data for each pixels in the selected region of interest to the pedestal
+       \param data pointer to the data
+    */
     
     virtual void addToPedestal(char *data) {
       
@@ -462,8 +544,8 @@ template <class dataType> class analogDetector {
       newFrame();
       
       
-      for (int ix=0; ix<nx; ix++) {
-	for (int iy=0; iy<ny; iy++) {
+      for (int ix=xmin; ix<xmax; ix++) {
+	for (int iy=ymin; iy<ymax; iy++) {
 	  
 	  
 	  addToPedestal(data,ix,iy);
@@ -474,6 +556,58 @@ template <class dataType> class analogDetector {
       return ;
       
     };
+
+
+
+  /**
+     Sets region of interest in which data should be processed
+       \param xmi minimum x. if -1 or out of range remains unchanged
+       \param xma maximum x. if -1 or out of range remains unchanged
+       \param ymi minimum y. if -1 or out of range remains unchanged
+       \param yma maximum y. if -1 or out of range remains unchanged
+    */
+
+    void setROI(int xmi=-1, int xma=-1, int ymi=-1, int yma=-1) {
+      if (xmi>=0 && xmi<=nx) xmin=xmi;
+      if (xma>=0 && xma<=nx) xmax=xma;
+      if (xmax<xmin) {
+	xmi=xmin;
+	xmin=xmax;
+	xmax=xmi;
+      }
+      
+      if (ymi>=0 && ymi<=ny) ymin=ymi;
+      if (yma>=0 && yma<=ny) ymax=yma;
+      if (ymax<ymin) {
+	ymi=ymin;
+	ymin=ymax;
+	ymax=ymi;
+      }
+      
+
+
+    };
+      /**
+     Gets region of interest in which data are processed
+       \param xmi reference to minimum x.
+       \param xma reference to maximum x. 
+       \param ymi reference to minimum y. 
+       \param yma reference to maximum y. 
+    */
+
+    void getROI(int &xmi, int &xma, int &ymi, int &yma) {xmi=xmin; xma=xmax; ymi=ymin; yma=ymax;};
+
+
+
+
+  /**
+      Adds all the data for the selected pixel to the pedestal
+       \param data pointer to the data
+       \param ix pixel x coordinate
+       \param iy pixel y coordinate
+    */
+
+
     virtual void addToPedestal(char *data, int ix, int iy=0) {
       
       
@@ -491,7 +625,14 @@ template <class dataType> class analogDetector {
       
     };
       
- 
+  
+  /**
+     Subtracts pedestal from the data array in the region of interest
+       \param data pointer to the data
+       \param val pointer where the pedestal subtracted data should be added. If NULL, the internal image is used
+       \returns pointer to the pedestal subtracted data
+    */
+
         
    virtual  double *subtractPedestal(char *data, double *val=NULL) {
       
@@ -500,8 +641,8 @@ template <class dataType> class analogDetector {
       if (val==NULL)
 	val=new double[nx*ny];
 
-      for (int ix=0; ix<nx; ix++) {
-	for (int iy=0; iy<ny; iy++) {
+      for (int ix=xmin; ix<xmax; ix++) {
+	for (int iy=ymin; iy<ymax; iy++) {
 	  val[iy*nx+ix]+=subtractPedestal(data, ix, iy);
 	}
       }
@@ -511,6 +652,15 @@ template <class dataType> class analogDetector {
 
 
 
+ /**
+     Subtracts pedestal from the data for a selected pixel
+       \param data pointer to the data
+       \param ix pixel x coordinate
+       \param iy pixel y coordinate
+       \returns pedestal subtracted value
+    */
+
+
 
    virtual  double subtractPedestal(char *data, int ix, int iy=0) {
      double g=1.;
@@ -528,52 +678,73 @@ template <class dataType> class analogDetector {
    };
       
 
+   /**
+      sets threshold value for conversion into number of photons
+      \param t threshold to be set 
+      \returns threshold value
+    */
+   double setThreshold(double t){thr=t; return thr;};
+     
+   /**
+      gets threshold value for conversion into number of photons
+      \returns threshold value
+    */
+   double getThreshold(){return thr;};
+     /**
+      converts the data into number of photons for the selected pixel
+      \param data pointer to the data
+      \param ix pixel x coordinate
+      \param iy pixel y coordinate
+      \returns converted number of photons. If no threshold is set, returns gain converted pedestal subtracted data.
+    */
 
-   virtual  int getNPhotons(char *data, int ix, int iy=0, int thr=-1) {
-     double g=1.;
-     int v;
+   virtual  int getNPhotons(char *data, int ix, int iy=0) {
+     int nph=0;
+     double v;
      if (ix>=0 && ix<nx && iy>=0 && iy<ny) {
-	
-       if (gmap) {
-	  g=gmap[iy*nx+ix];
-	  if (g==0) g=-1.;
-	}
-
-	if (thr<=0) thr=-1*thr*getPedestalRMS(ix,iy)/g;
-	
-	/* if (det) */
-	/*   return (dataSign*det->getValue(data, ix, iy)-getPedestal(ix,iy))/g/thr; */
-	/* else { */
-	//if (ix==30 && iy==50 )
-	  v=subtractPedestal(data,ix,iy)/g/thr;
-	  if (v>0)
-	  return v;
-	  //cout << v << endl;
-	  return 0;
-	  //	}
-      }
-      return 0;
-      
+       v=subtractPedestal(data,ix,iy);
+       if (thr>0) {
+	 v+=0.5*thr;
+	 nph=v/thr;
+	 return nph;
+       } else
+	 return v;
+     }
+     return 0;  
    };
+   
+   /**
+      converts the data into number of photons for all pixels
+      \param data pointer to the data
+      \param nph pointer where the photons should added. If NULL,the internal image is used
+      \returns pointer to array containing the number of photons
+   */
+     int *getNPhotons(char *data,  int *nph=NULL) {
+       
+       double val;
+     if (nph==NULL)
+       nph=image;
+     newFrame();
+     for (int ix=xmin; ix<xmax; ix++) {
+       for (int iy=ymin; iy<ymax; iy++) {
+	 nph[iy*nx+ix]+=getNPhotons(data, ix, iy);
+       }
+     }
+     return nph;
+     
+   }
 
-   int *getNPhotons(char *data, double thr=-1, int *nph=NULL) {
-
-      double val;
-      if (nph==NULL)
-	nph=image;//image=new int[nx*ny];   
-      double tthr=thr;
-      newFrame();
-      for (int ix=0; ix<nx; ix++) {
-	for (int iy=0; iy<ny; iy++) {
-	  nph[iy*nx+ix]+=getNPhotons(data, ix, iy, thr);
-	}
-      }
-      return nph;
-
-    }
-
-   virtual void clearImage(){  for (int ix=0; ix<nx; ix++) {
-       for (int iy=0; iy<ny; iy++) { image[iy*nx+ix]=0;}}};
+ /**
+      clears the image array
+     
+    */
+   virtual void clearImage(){  
+     for (int ix=0; ix<nx; ix++) {
+       for (int iy=0; iy<ny; iy++) { 
+	 image[iy*nx+ix]=0;
+       }
+     }
+   };
 
     /** sets/gets number of samples for moving average pedestal calculation
 	\param i number of samples to be set (0 or negative gets)
@@ -588,6 +759,9 @@ template <class dataType> class analogDetector {
       return stat[0][0].SetNPedestals();
     };
 
+ /** gets number of samples for moving average pedestal calculation
+	\returns actual number of samples
+    */
     int GetNPedestals(int ix, int iy) {
       if  (ix>=0 &&  ix<nx && iy>=0 && iy<ny) 
 	return stat[iy][ix].GetNPedestals(); 
@@ -596,29 +770,74 @@ template <class dataType> class analogDetector {
     };
 
  
-    double getROI(char *data, int xmin, int xmax, int ymin=0, int ymax=1) {
-      double val=0;
-      for (int ix=xmin; ix<xmax; ix++)
-	for (int iy=ymin; iy<ymax; iy++)
+ /** calculates the sum of photons in the specified region of interest. 
+     \param data pointer to the data
+     \param xmi minimum x for the calculation. If -1 the minimum x of the predefined region of interest is used
+     \param xma maximum x for the calculation. If -1 the maximum x of the predefined region of interest is used
+     \param ymi minimum y for the calculation. If -1 the minimum y of the predefined region of interest is used
+     \param yma maximum y for the calculation. If -1 the maximum y of the predefined region of interest is used
+     
+	\returns total number of photons in
+    */
+    virtual int getTotalNumberOfPhotons(char *data, int xmi=-1, int xma=-1, int ymi=-1, int yma=-1) {
+      int val=0;
+      if (xmi<0) xmi=xmin;
+      if (xma<0) xma=xmax;
+      if (ymi<0) ymi=ymin;
+      if (yma<0) yma=ymax;
+      
+      for (int ix=xmi; ix<xma; ix++)
+	for (int iy=ymi; iy<yma; iy++)
 	  if (ix>=0 && ix<nx && iy>=0 && iy<ny) 
-	    val+=subtractPedestal(data, ix, iy);
+	    val+=getNPhotons(data, ix, iy);
       return val;
       
     };
 
 
-    virtual void processData(char *data, frameMode i=eFrame, int *val=NULL) {
-      switch(i) {
+ /** 
+     calculates the image converted into number of photons. If the frame mode is pedestal, it also it to the pdedestal subtraction.
+     \param data pointer to the data to be processed
+     \param val pointer of the data to be added to. If NULL, the internal image will be used
+     \param pointer to the processed data
+     \returns 
+    */
+
+    virtual void processData(char *data,int *val=NULL) {
+      switch(fMode) {
       case ePedestal:
 	addToPedestal(data);
 	break;
       default:
-	getNPhotons(data,-1,val);
+	getNPhotons(data,val);
       }
     };
 
     virtual char *getInterpolation(){return NULL;};
 
+ /** sets the current frame mode for the detector
+     \param f frame mode to be set
+     
+     \returns current frame mode
+    */
+    frameMode setFrameMode(frameMode f) {fMode=f; return fMode;};
+    
+ /** gets the current frame mode for the detector
+     \returns current frame mode
+    */
+    frameMode getFrameMode() {return fMode;};
+    
+/** sets file pointer where to write the clusters to 
+    \param f file pointer
+    \returns current file pointer
+*/
+FILE *setFilePointer(FILE *f){myFile=f; return myFile;};
+
+/** gets file pointer where to write the clusters to 
+    \returns current file pointer
+*/
+FILE *getFilePointer(){return myFile;};
+ void setMutex(pthread_mutex_t *m){fm=m;};
  protected:
   
     slsDetectorData<dataType> *det; /**< slsDetectorData to be used */
@@ -631,7 +850,17 @@ template <class dataType> class analogDetector {
     double *gmap;
     int *image;
     int id;
-    //int xmin, xmax, ymin, ymax;
+    //int xmin, xmax, ymin, ymax;  int xmin; /**< minimum x of the region of interest */
+    int xmin; /**< minimum x of the region of interest */
+    int xmax; /**< maximum x of the region of interest */
+    int ymin;/**< minimum y of the region of interest */
+    int ymax;/**< maximum y of the region of interest */
+    double thr; /**< threshold to be used for conversion into number of photons */
+    //  int nSigma; /**< number of sigma to be used for conversion into number of photons if threshold is undefined */
+    frameMode fMode; /**< current detector frame mode */
+    FILE *myFile; /**< file pointer to write to */
+    
+    pthread_mutex_t *fm;
 };
 
 #endif
diff --git a/slsDetectorCalibration/Mythen3_01_jctbData.h b/slsDetectorCalibration/dataStructures/Mythen3_01_jctbData.h
similarity index 100%
rename from slsDetectorCalibration/Mythen3_01_jctbData.h
rename to slsDetectorCalibration/dataStructures/Mythen3_01_jctbData.h
diff --git a/slsDetectorCalibration/adcSar2_jctbData.h b/slsDetectorCalibration/dataStructures/adcSar2_jctbData.h
similarity index 100%
rename from slsDetectorCalibration/adcSar2_jctbData.h
rename to slsDetectorCalibration/dataStructures/adcSar2_jctbData.h
diff --git a/slsDetectorCalibration/chiptestBoardData.h b/slsDetectorCalibration/dataStructures/chiptestBoardData.h
similarity index 100%
rename from slsDetectorCalibration/chiptestBoardData.h
rename to slsDetectorCalibration/dataStructures/chiptestBoardData.h
diff --git a/slsDetectorCalibration/eigerHalfModuleData.h b/slsDetectorCalibration/dataStructures/eigerHalfModuleData.h
similarity index 100%
rename from slsDetectorCalibration/eigerHalfModuleData.h
rename to slsDetectorCalibration/dataStructures/eigerHalfModuleData.h
diff --git a/slsDetectorCalibration/gotthardModuleData.h b/slsDetectorCalibration/dataStructures/gotthardModuleData.h
similarity index 100%
rename from slsDetectorCalibration/gotthardModuleData.h
rename to slsDetectorCalibration/dataStructures/gotthardModuleData.h
diff --git a/slsDetectorCalibration/gotthardShortModuleData.h b/slsDetectorCalibration/dataStructures/gotthardShortModuleData.h
similarity index 100%
rename from slsDetectorCalibration/gotthardShortModuleData.h
rename to slsDetectorCalibration/dataStructures/gotthardShortModuleData.h
diff --git a/slsDetectorCalibration/jungfrau02Data.h b/slsDetectorCalibration/dataStructures/jungfrau02Data.h
similarity index 100%
rename from slsDetectorCalibration/jungfrau02Data.h
rename to slsDetectorCalibration/dataStructures/jungfrau02Data.h
diff --git a/slsDetectorCalibration/jungfrau10ModuleData.h b/slsDetectorCalibration/dataStructures/jungfrau10ModuleData.h
similarity index 100%
rename from slsDetectorCalibration/jungfrau10ModuleData.h
rename to slsDetectorCalibration/dataStructures/jungfrau10ModuleData.h
diff --git a/slsDetectorCalibration/moench02Ctb10GbData.h b/slsDetectorCalibration/dataStructures/moench02Ctb10GbData.h
similarity index 100%
rename from slsDetectorCalibration/moench02Ctb10GbData.h
rename to slsDetectorCalibration/dataStructures/moench02Ctb10GbData.h
diff --git a/slsDetectorCalibration/moench02CtbData.h b/slsDetectorCalibration/dataStructures/moench02CtbData.h
similarity index 100%
rename from slsDetectorCalibration/moench02CtbData.h
rename to slsDetectorCalibration/dataStructures/moench02CtbData.h
diff --git a/slsDetectorCalibration/moench02ModuleData.h b/slsDetectorCalibration/dataStructures/moench02ModuleData.h
similarity index 100%
rename from slsDetectorCalibration/moench02ModuleData.h
rename to slsDetectorCalibration/dataStructures/moench02ModuleData.h
diff --git a/slsDetectorCalibration/moench03Ctb10GbData.h b/slsDetectorCalibration/dataStructures/moench03Ctb10GbData.h
similarity index 100%
rename from slsDetectorCalibration/moench03Ctb10GbData.h
rename to slsDetectorCalibration/dataStructures/moench03Ctb10GbData.h
diff --git a/slsDetectorCalibration/moench03Ctb10GbT1Data.h b/slsDetectorCalibration/dataStructures/moench03Ctb10GbT1Data.h
similarity index 100%
rename from slsDetectorCalibration/moench03Ctb10GbT1Data.h
rename to slsDetectorCalibration/dataStructures/moench03Ctb10GbT1Data.h
diff --git a/slsDetectorCalibration/moench03CtbData.h b/slsDetectorCalibration/dataStructures/moench03CtbData.h
similarity index 100%
rename from slsDetectorCalibration/moench03CtbData.h
rename to slsDetectorCalibration/dataStructures/moench03CtbData.h
diff --git a/slsDetectorCalibration/moench03T1CtbData.h b/slsDetectorCalibration/dataStructures/moench03T1CtbData.h
similarity index 100%
rename from slsDetectorCalibration/moench03T1CtbData.h
rename to slsDetectorCalibration/dataStructures/moench03T1CtbData.h
diff --git a/slsDetectorCalibration/dataStructures/moench03T1ReceiverData.h b/slsDetectorCalibration/dataStructures/moench03T1ReceiverData.h
new file mode 100644
index 000000000..855bfb7c4
--- /dev/null
+++ b/slsDetectorCalibration/dataStructures/moench03T1ReceiverData.h
@@ -0,0 +1,285 @@
+#ifndef MOENCH03T1ZMQDATA_H
+#define  MOENCH03T1ZMQDATA_H
+#include "slsDetectorData.h"
+
+    /**
+        @short  structure for a Detector Packet or Image Header
+        @li frameNumber is the frame number
+        @li expLength is the subframe number (32 bit eiger) or real time exposure time in 100ns (others)
+        @li packetNumber is the packet number
+        @li bunchId is the bunch id from beamline
+        @li timestamp is the time stamp with 10 MHz clock
+        @li modId is the unique module id (unique even for left, right, top, bottom)
+        @li xCoord is the x coordinate in the complete detector system
+        @li yCoord is the y coordinate in the complete detector system
+        @li zCoord is the z coordinate in the complete detector system
+        @li debug is for debugging purposes
+        @li roundRNumber is the round robin set number
+        @li detType is the detector type see :: detectorType
+        @li version is the version number of this structure format
+    */
+    typedef struct {
+        uint64_t frameNumber;    /**< is the frame number */
+        uint32_t expLength;        /**< is the subframe number (32 bit eiger) or real time exposure time in 100ns (others) */
+        uint32_t packetNumber;    /**< is the packet number */
+        uint64_t bunchId;        /**< is the bunch id from beamline */
+        uint64_t timestamp;        /**< is the time stamp with 10 MHz clock */
+        uint16_t modId;            /**< is the unique module id (unique even for left, right, top, bottom) */
+        uint16_t xCoord;        /**< is the x coordinate in the complete detector system */
+        uint16_t yCoord;        /**< is the y coordinate in the complete detector system */
+        uint16_t zCoord;        /**< is the z coordinate in the complete detector system */
+        uint32_t debug;            /**< is for debugging purposes */
+        uint16_t roundRNumber;    /**< is the round robin set number */
+        uint8_t detType;        /**< is the detector type see :: detectorType */
+        uint8_t version;        /**< is the version number of this structure format */
+    } sls_detector_header;
+
+
+
+
+class moench03T1ReceiverData : public slsDetectorData<uint16_t> {
+ 
+ private:
+  
+  int iframe;
+  int nadc;
+  int sc_width;
+  int sc_height;
+  const int nPackets; /**<number of UDP packets constituting one frame */
+  const int packetSize; /**< size of a udp packet */
+
+
+ public:
+
+
+
+
+  /**
+     Implements the slsReceiverData structure for the moench02 prototype read out by a module i.e. using the slsReceiver
+     (160x160 pixels, 40 packets 1286 large etc.)
+     \param c crosstalk parameter for the output buffer
+
+  */
+    moench03T1ReceiverData(int npackets=40, int ps=8192): slsDetectorData<uint16_t>(400, 400, ps*npackets+sizeof(sls_detector_header)), packetSize(ps), nPackets(npackets) {
+
+    int nadc=32;
+    int sc_width=25;
+    int sc_height=200;
+
+    int adc_nr[32]={300,325,350,375,300,325,350,375,		\
+    		    200,225,250,275,200,225,250,275,\
+    		    100,125,150,175,100,125,150,175,\
+    		    0,25,50,75,0,25,50,75};
+
+    int row, col;
+
+    int isample;
+    int iadc;
+    int ix, iy;
+    
+    // int npackets=40;
+    int i;
+    int adc4(0);
+
+    for (int ip=0; ip<npackets; ip++) {
+      for (int is=0; is<128; is++) {
+
+	for (iadc=0; iadc<nadc; iadc++) {
+	  i=128*ip+is;
+	  adc4=(int)iadc/4;
+	  if (i<sc_width*sc_height) {
+	    //  for (int i=0; i<sc_width*sc_height; i++) {
+	    col=adc_nr[iadc]+(i%sc_width);
+	    if (adc4%2==0) {
+	      row=199-i/sc_width;
+	    } else {
+	      row=200+i/sc_width;
+	    }
+	    dataMap[row][col]=sizeof(sls_detector_header)+(nadc*i+iadc)*2;//+16*(ip+1);
+	    if (dataMap[row][col]<0 || dataMap[row][col]>=8192*40)
+	      cout << "Error: pointer " << dataMap[row][col] << " out of range "<< endl;
+	  }
+	}
+      }
+    }
+
+    int ipacket;
+    int ibyte;
+    int ii=0;
+    for (ibyte=0; ibyte<sizeof(sls_detector_header)/2; ibyte++){
+      xmap[ibyte]=-1;
+      ymap[ibyte]=-1;
+    }
+    int off=sizeof(sls_detector_header)/2;
+    for (ipacket=0; ipacket<npackets; ipacket++) {
+      for (ibyte=0;  ibyte< 8192/2; ibyte++) {
+	i=ipacket*8208/2+ibyte;
+	  isample=ii/nadc;
+	  iadc=ii%nadc;
+	  adc4 = (int)iadc/4;
+	  ix=isample%sc_width;
+	  iy=isample/sc_width;
+	  if (adc4%2==0) {
+	    xmap[i+off]=adc_nr[iadc]+ix;
+	    ymap[i+off]=ny/2-1-iy;
+	  } else {
+	    xmap[i+off]=adc_nr[iadc]+ix;
+	    ymap[i+off]=ny/2+iy;
+	  }
+	  
+	ii++;
+	//	}
+      }
+    }
+    
+    iframe=0;
+    //  cout << "data struct created" << endl;
+  };
+    
+
+
+     /**
+
+     Returns the frame number for the given dataset. Purely virtual func.
+     \param buff pointer to the dataset
+     \returns frame number
+
+  */
+
+/* class jfrau_packet_header_t { */
+/*  public: */
+/* 	unsigned char reserved[4]; */
+/* 	unsigned char packetNumber[1]; */
+/* 	unsigned char frameNumber[3]; */
+/* 	unsigned char bunchid[8]; */
+/* }; */
+
+
+
+  int getFrameNumber(char *buff){return ((sls_detector_header*)buff)->frameNumber;};//*((int*)(buff+5))&0xffffff;};   
+
+  /**
+
+     Returns the packet number for the given dataset. purely virtual func
+     \param buff pointer to the dataset
+     \returns packet number number
+
+
+
+  */
+  int getPacketNumber(char *buff){((sls_detector_header*)buff)->packetNumber;}//((*(((int*)(buff+4))))&0xff)+1;};   
+
+/*    /\** */
+
+/*      Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func */
+/*      \param data pointer to the memory to be analyzed */
+/*      \param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot */
+/*      \param dsize size of the memory slot to be analyzed */
+/*      \returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found  */
+
+/*   *\/ */
+/*     virtual  char *findNextFrame(char *data, int &ndata, int dsize){ndata=dsize; setDataSize(dsize);  return data;}; */
+
+
+/*    /\** */
+
+/*      Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors!  */
+/*      \param filebin input file stream (binary) */
+/*      \returns pointer to the begin of the last good frame, NULL if no frame is found or last frame is incomplete */
+
+/*   *\/ */
+/*     virtual char *readNextFrame(ifstream &filebin){ */
+/*       //	int afifo_length=0;   */
+/*       uint16_t *afifo_cont;  */
+/*       int ib=0; */
+/*       if (filebin.is_open()) { */
+/* 	afifo_cont=new uint16_t[dataSize/2]; */
+/*  	while (filebin.read(((char*)afifo_cont)+ib,2)) { */
+/* 	  ib+=2; */
+/* 	  if (ib==dataSize) break; */
+/* 	} */
+/* 	if (ib>0) { */
+/* 	  iframe++; */
+/* 	  // cout << ib << "-" << endl; */
+/* 	  return (char*)afifo_cont; */
+/* 	} else { */
+/* 	  delete [] afifo_cont; */
+/* 	  return NULL; */
+/* 	} */
+/*       }      */
+/*       return NULL; */
+/*     }; */
+
+
+  virtual char *readNextFrame(ifstream &filebin) {
+    int ff=-1, np=-1;
+    return readNextFrame(filebin, ff, np);
+  };
+
+  virtual char *readNextFrame(ifstream &filebin, int &ff) {
+    int np=-1;
+    return readNextFrame(filebin, ff, np);
+  };
+
+  virtual char *readNextFrame(ifstream &filebin, int& ff, int &np) {
+	  char *data=new char[dataSize];
+	  char *d=readNextFrame(filebin, ff, np, data);
+	  if (d==NULL) {delete [] data; data=NULL;}
+	  return data;
+  }
+
+
+
+
+  virtual char *readNextFrame(ifstream &filebin, int& ff, int &np, char *data) {
+	  char *retval=0;
+	  int  nd;
+	  int fnum = -1;
+	  np=0;
+	  int  pn;
+	  
+	  //  cout << dataSize << endl;
+	  if (ff>=0)
+	    fnum=ff;
+
+	  if (filebin.is_open()) {
+	    if (filebin.read(data, dataSize) ){
+	      ff=getFrameNumber(data);
+	      np=getPacketNumber(data);
+	      return data;
+	    }
+	  }
+	    return NULL;
+	    
+	    
+	  
+  };
+
+
+
+  /**
+
+     Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
+     \param data pointer to the memory to be analyzed
+     \param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
+     \param dsize size of the memory slot to be analyzed
+     \returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found 
+     
+  */
+  virtual  char *findNextFrame(char *data, int &ndata, int dsize){
+    if (dsize<dataSize) ndata=dsize;
+    else ndata=dataSize;
+    return data;
+
+  }
+
+
+
+int getPacketNumber(int x, int y) {return dataMap[y][x]/packetSize;};
+
+};
+
+
+
+
+#endif
diff --git a/slsDetectorCalibration/moench03T1ZmqData.h b/slsDetectorCalibration/dataStructures/moench03T1ZmqData.h
similarity index 100%
rename from slsDetectorCalibration/moench03T1ZmqData.h
rename to slsDetectorCalibration/dataStructures/moench03T1ZmqData.h
diff --git a/slsDetectorCalibration/dataStructures/moench03T1ZmqDataNew.h b/slsDetectorCalibration/dataStructures/moench03T1ZmqDataNew.h
new file mode 100644
index 000000000..5b94feabb
--- /dev/null
+++ b/slsDetectorCalibration/dataStructures/moench03T1ZmqDataNew.h
@@ -0,0 +1,268 @@
+#ifndef MOENCH03T1ZMQDATANEW_H
+#define  MOENCH03T1ZMQDATANEW_H
+#include "slsDetectorData.h"
+
+
+
+class moench03T1ZmqDataNew : public slsDetectorData<uint16_t> {
+ 
+ private:
+  
+  int iframe;
+  int nadc;
+  int sc_width;
+  int sc_height;
+  const int nSamples;
+
+ public:
+
+
+
+
+  /**
+     Implements the slsReceiverData structure for the moench02 prototype read out by a module i.e. using the slsReceiver
+     (160x160 pixels, 40 packets 1286 large etc.)
+     \param c crosstalk parameter for the output buffer
+
+  */
+ moench03T1ZmqDataNew(int ns=5000): slsDetectorData<uint16_t>(400, 400, ns*32*2), nSamples(ns) {
+
+    int nadc=32;
+    int sc_width=25;
+    int sc_height=200;
+
+    int adc_nr[32]={300,325,350,375,300,325,350,375,		\
+    		    200,225,250,275,200,225,250,275,\
+    		    100,125,150,175,100,125,150,175,\
+    		    0,25,50,75,0,25,50,75};
+
+    int row, col;
+
+    int isample;
+    int iadc;
+    int ix, iy;
+    
+     int npackets=40;
+    int i;
+    int adc4(0);
+  
+    for (int ip=0; ip<npackets; ip++) {
+      for (int is=0; is<128; is++) {
+
+	for (iadc=0; iadc<nadc; iadc++) {
+	  i=128*ip+is;
+	  adc4=(int)iadc/4;
+	  if (i<sc_width*sc_height) {
+	    //  for (int i=0; i<sc_width*sc_height; i++) {
+	    col=adc_nr[iadc]+(i%sc_width);
+	    if (adc4%2==0) {
+	      row=199-i/sc_width;
+	    } else {
+	      row=200+i/sc_width;
+	    }
+	    dataMap[row][col]=(nadc*i+iadc)*2;//+16*(ip+1);
+	    if (dataMap[row][col]<0 || dataMap[row][col]>=nSamples*2*32)
+	      cout << "Error: pointer " << dataMap[row][col] << " out of range "<< endl;
+	  }
+	}
+      }
+    }
+
+    int ipacket;
+    int ibyte;
+    int ii=0;
+    for (int ipacket=0; ipacket<npackets; ipacket++) {
+      for (int ibyte=0;  ibyte< 8192/2; ibyte++) {
+	i=ipacket*8208/2+ibyte;
+	/* if (ibyte<8) { */
+	/* //header! */
+	/*   xmap[i]=-1; */
+	/*   ymap[i]=-1; */
+	/* } else { */
+	  // ii=ibyte+128*32*ipacket;
+	  isample=ii/nadc;
+	  if (isample<nSamples) {
+	  iadc=ii%nadc;
+	  adc4 = (int)iadc/4;
+	  ix=isample%sc_width;
+	  iy=isample/sc_width;
+	  if (adc4%2==0) {
+	    xmap[i]=adc_nr[iadc]+ix;
+	    ymap[i]=ny/2-1-iy;
+	  } else {
+	    xmap[i]=adc_nr[iadc]+ix;
+	    ymap[i]=ny/2+iy;
+	  }
+	  }
+	  
+	ii++;
+	//	}
+      }
+    }
+    
+
+    
+    
+    iframe=0;
+    //  cout << "data struct created" << endl;
+  };
+    
+
+
+     /**
+
+     Returns the frame number for the given dataset. Purely virtual func.
+     \param buff pointer to the dataset
+     \returns frame number
+
+  */
+
+/* class jfrau_packet_header_t { */
+/*  public: */
+/* 	unsigned char reserved[4]; */
+/* 	unsigned char packetNumber[1]; */
+/* 	unsigned char frameNumber[3]; */
+/* 	unsigned char bunchid[8]; */
+/* }; */
+
+
+
+  int getFrameNumber(char *buff){return iframe;};//*((int*)(buff+5))&0xffffff;};   
+
+  /**
+
+     Returns the packet number for the given dataset. purely virtual func
+     \param buff pointer to the dataset
+     \returns packet number number
+
+
+
+  */
+  int getPacketNumber(char *buff){return 0;}//((*(((int*)(buff+4))))&0xff)+1;};   
+
+/*    /\** */
+
+/*      Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func */
+/*      \param data pointer to the memory to be analyzed */
+/*      \param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot */
+/*      \param dsize size of the memory slot to be analyzed */
+/*      \returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found  */
+
+/*   *\/ */
+/*     virtual  char *findNextFrame(char *data, int &ndata, int dsize){ndata=dsize; setDataSize(dsize);  return data;}; */
+
+
+/*    /\** */
+
+/*      Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors!  */
+/*      \param filebin input file stream (binary) */
+/*      \returns pointer to the begin of the last good frame, NULL if no frame is found or last frame is incomplete */
+
+/*   *\/ */
+/*     virtual char *readNextFrame(ifstream &filebin){ */
+/*       //	int afifo_length=0;   */
+/*       uint16_t *afifo_cont;  */
+/*       int ib=0; */
+/*       if (filebin.is_open()) { */
+/* 	afifo_cont=new uint16_t[dataSize/2]; */
+/*  	while (filebin.read(((char*)afifo_cont)+ib,2)) { */
+/* 	  ib+=2; */
+/* 	  if (ib==dataSize) break; */
+/* 	} */
+/* 	if (ib>0) { */
+/* 	  iframe++; */
+/* 	  // cout << ib << "-" << endl; */
+/* 	  return (char*)afifo_cont; */
+/* 	} else { */
+/* 	  delete [] afifo_cont; */
+/* 	  return NULL; */
+/* 	} */
+/*       }      */
+/*       return NULL; */
+/*     }; */
+
+
+  virtual char *readNextFrame(ifstream &filebin) {
+    int ff=-1, np=-1;
+    return readNextFrame(filebin, ff, np);
+  };
+
+  virtual char *readNextFrame(ifstream &filebin, int &ff) {
+    int np=-1;
+    return readNextFrame(filebin, ff, np);
+  };
+
+  virtual char *readNextFrame(ifstream &filebin, int& ff, int &np) {
+	  char *data=new char[32*2*nSamples];
+	  char *d=readNextFrame(filebin, ff, np, data);
+	  if (d==NULL) {delete [] data; data=NULL;}
+	  return data;
+  }
+
+
+
+
+  virtual char *readNextFrame(ifstream &filebin, int& ff, int &np, char *data) {
+	  char *retval=0;
+	  int  nd;
+	  int fnum = -1;
+	  np=0;
+	  int  pn;
+	  
+
+	  if (ff>=0)
+	    fnum=ff;
+
+	  if (filebin.is_open()) {
+	    if (filebin.read(data, 32*2*nSamples) ){
+	      iframe++;
+	      ff=iframe;
+	      return data;
+	    }
+	  }
+	    return NULL;
+	    
+	    
+	  
+  };
+
+
+
+  /**
+
+     Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
+     \param data pointer to the memory to be analyzed
+     \param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
+     \param dsize size of the memory slot to be analyzed
+     \returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found 
+     
+  */
+  virtual  char *findNextFrame(char *data, int &ndata, int dsize){
+    if (dsize<32*2*nSamples) ndata=dsize;
+    else ndata=32*2*nSamples;
+    return data;
+
+  }
+  
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+int getPacketNumber(int x, int y) {return 0;};
+
+};
+
+
+
+
+#endif
diff --git a/slsDetectorCalibration/moench03TCtb10GbData.h b/slsDetectorCalibration/dataStructures/moench03TCtb10GbData.h
similarity index 100%
rename from slsDetectorCalibration/moench03TCtb10GbData.h
rename to slsDetectorCalibration/dataStructures/moench03TCtb10GbData.h
diff --git a/slsDetectorCalibration/moench03TCtbData.h b/slsDetectorCalibration/dataStructures/moench03TCtbData.h
similarity index 100%
rename from slsDetectorCalibration/moench03TCtbData.h
rename to slsDetectorCalibration/dataStructures/moench03TCtbData.h
diff --git a/slsDetectorCalibration/demoCreateTree.C b/slsDetectorCalibration/demoCreateTree.C
deleted file mode 100644
index 773a9ddac..000000000
--- a/slsDetectorCalibration/demoCreateTree.C
+++ /dev/null
@@ -1,31 +0,0 @@
-{
-
-  //.L moenchReadData.C
-
-
-
-
-
-
-  TFile *fout;
-  THStack *hs2N;
-
-  fout=new TFile("/scratch/outfile.root","RECREATE");
-
-  hs2N=moenchReadData("/data/moench_xbox_20140113/MoTarget_45kV_0_8mA_12us_120V_cds_g4_f00000%04d000_0.raw","dum",0,20,1500,-500,2500,1,0.,1,159,1,159, 0,1); 
-  hs2N->SetName("cds_g4");
-  hs2N->SetTitle("cds_g4");
-  (TH2F*)(hs2N->GetHists()->At(0))->Write();
-
- (TH2F*)(hs2N->GetHists()->At(1))->Write();
- (TH2F*)(hs2N->GetHists()->At(2))->Write();
- (TH2F*)(hs2N->GetHists()->At(3))->Write();
- (TH2F*)(hs2N->GetHists()->At(4))->Write();
-
-
-  fout->Close();
-
-
-
-}
-
diff --git a/slsDetectorCalibration/etaVEL/imageMacro.C b/slsDetectorCalibration/etaVEL/imageMacro.C
deleted file mode 100644
index 16dc9117d..000000000
--- a/slsDetectorCalibration/etaVEL/imageMacro.C
+++ /dev/null
@@ -1,457 +0,0 @@
-TH2D *imageMacro(char *name) {
-
-  //TH2D *makeNorm(){
-
-  //TFile ff("/local_zfs_raid/tomcat_20160528/trees/img_blank_eta_gmap.root");
-  //TH2D *hff=(TH2D*)ff.Get("imgHR");
-    TFile *ff=new TFile("/mnt/moench_data/tomcat_20160528_img/img_blank_eta_nb25.root");
-  //  TFile ff("/local_zfs_raid/tomcat_20160528/trees/img_blank_eta_gcorr_nb25.root");
-  TH2D *hff=(TH2D*)ff->Get("blankHR");
-  hff->SetName("imgBlank");
-  TH2D *hpixel=new TH2D("hpixel","hpixel",25,0,25,25,0,25);
-  for (int ibx=10*25; ibx<hff->GetNbinsX()-10*25; ibx++) {
-    for (int iby=20*25; iby<hff->GetNbinsY()-20*25; iby++) {
-      hpixel->Fill((ibx-12)%25,(iby-12)%25,hff->GetBinContent(ibx+1,iby+1));
-    }
-  }
-  hpixel->Scale(1./hpixel->GetBinContent(13,13));
-
-  // new TCanvas();
-  // hpixel->Draw("colz"); 
-
-  //  TH2D *hraw=(TH2D*)hff->Clone("hraw");
-  TH2D *hpix=(TH2D*)hff->Clone("hpix");
-
-  for (int ibx=0; ibx<hff->GetNbinsX(); ibx++) {
-    for (int iby=0; iby<hff->GetNbinsY(); iby++) {
-      hpix->SetBinContent(ibx+1,iby+1,hpixel->GetBinContent(hpixel->GetXaxis()->FindBin((ibx-12)%25),hpixel->GetXaxis()->FindBin((iby-12)%25)));
-    }
-  }
-  //  return hpix;
-  //}
-
-  //void imageMacro(char *name,TH2D *hpix=NULL){
-  // hff->Divide(hpix);
-
-  //  new TCanvas();
-  // hff->Draw("colz");
-
-  // if (hpix==NULL)
-  //  hpix=makeNorm();
-  TH2D *hg;
-
-  char nn[1000];
-  if (strcmp(name,"blank")==NULL) {
-    hg=hff;
-  }    else {
-    
-  
-  sprintf(nn,"/mnt/moench_data/tomcat_20160528_img/img_%s_eta_nb25.root", name);
-  // if (strcmp(name,"blank"))
-    TFile *fg=new TFile(nn);
-    // else
-    // TFile fg=gDirectory;
-
-  //TFile fg("/local_zfs_raid/tomcat_20160528/trees/img_grating_1d_eta_gmap.root");
-  //TH2D *hg=(TH2D*)fg.Get("imgHR");
-  //   TFile fg("/local_zfs_raid/tomcat_20160528/trees/img_grating_1d_eta_nb25.root");
-  //  TFile fg("/local_zfs_raid/tomcat_20160528/trees/img_sample_eta_nb25.root");
-  // TFile fg("/local_zfs_raid/tomcat_20160528/trees/img_grating_1d_eta_gcorr_nb25.root");
-   sprintf(nn,"%sHR",name);
-   TH2D *hg=(TH2D*)fg->Get(nn);
-   // hg->SetName("imgGrating");
-
-  //hg->Divide(hff);
-  }
-   if (hpix)
-     hg->Divide(hpix);
-   new TCanvas();
-   hg->Draw("colz");
-
-   return hg;
-}
-
-
-void imageMacro(TH2D *hg){
-
-  Double_t imageData[200*400*25*25];
-  const int nsigma=5.;
-  int ip=0;
-  int max=0;
-  Double_t avg=0, rms=0;
-    for (int iby=0; iby<hg->GetNbinsY(); iby++) {
-   for (int ibx=0; ibx<hg->GetNbinsX(); ibx++) {
-     imageData[ip]=hg->GetBinContent(ibx+1,iby+1);
-     if (imageData[ip]>max) max=imageData[ip];
-     //  if (imageData[ip]>3000) imageData[ip]=3000.;
-     avg+=((Double_t)imageData[ip])/(hg->GetNbinsY()*hg->GetNbinsX());
-     rms+=((Double_t)imageData[ip])*((Double_t)imageData[ip])/(hg->GetNbinsY()*hg->GetNbinsX());
-     ip++;
-    }
-  }  
-    rms=TMath::Sqrt(rms-avg*avg);
-    ip=0;
-    for (int iby=0; iby<hg->GetNbinsY(); iby++) {
-      for (int ibx=0; ibx<hg->GetNbinsX(); ibx++) {
-     if (imageData[ip]>avg+nsigma*rms) imageData[ip]=avg+nsigma*rms;
-     //  if (imageData[ip]>3000) imageData[ip]=3000.;
-     ip++;
-    }
-  }
-    cout << "MAXIMUM IS "<< max << endl;
-    cout << "AVERAGE IS "<< avg << endl;
-    cout << "RMS IS "<< rms << endl;
-
-
- int nbx=hg->GetNbinsX();
-int nby=hg->GetNbinsY();
-Short_t *buffer=new Short_t[nbx];
-//   // cout << "Size of short int is "<<sizeof(char)<< endl;
-//   // cout << "width is "<<nbx<< endl;
-//   // cout << "height is "<<nby<< endl;
-  sprintf(nn,"%s_HR.bin", name);
- ofstream myFile (nn, ios::out | ios::binary);
- ip=0;
- for (int iy=0; iy<nby; iy++) {
-   for (int ix=0; ix<nbx; ix++) {
-     buffer[ix]=imageData[ip]*65535/nsigma/avg;
-     ip++;
-   }
-   myFile.write((char*)buffer, nbx*sizeof(Short_t));
- }
- myFile.close();
-
-
-
-
-
- TASImage *img=new TASImage 	( "img",imageData, 400*25, 200*25);//		TImagePalette *  	palette = 0 
-    new TCanvas();
-    img->SetImageCompression(0);
-    img->SetImageQuality(TAttImage::kImgBest);
-    //  img->Gray(kTRUE);
-    img->Draw();
-
-  sprintf(nn,"%s_HR.tiff", name);
-
-    img->WriteImage(nn, TImage::kTiff);	
-
-    // new TCanvas();
-    // hg->SetMaximum(3000);
-    // hg->DrawCopy("colz");
-
-
-    hg->Rebin2D(25,25);
-
-    Double_t imageDataLR[200*400];
-
-    ip=0; max=0;avg=0; rms=0;
-    for (int iby=0; iby<hg->GetNbinsY(); iby++) {
-   for (int ibx=0; ibx<hg->GetNbinsX(); ibx++) {
-     imageDataLR[ip]=hg->GetBinContent(ibx+1,iby+1);
-     if (imageDataLR[ip]>max) max=imageDataLR[ip];
-     avg+=((Double_t)imageDataLR[ip])/(hg->GetNbinsY()*hg->GetNbinsX());
-     rms+=((Double_t)imageDataLR[ip])*((Double_t)imageDataLR[ip])/(hg->GetNbinsY()*hg->GetNbinsX());
-     ip++;
-    }
-    }
-    rms=TMath::Sqrt(rms-avg*avg);
-    ip=0;
-    for (int iby=0; iby<hg->GetNbinsY(); iby++) {
-      for (int ibx=0; ibx<hg->GetNbinsX(); ibx++) {
-     if (imageDataLR[ip]>avg+nsigma*rms) imageDataLR[ip]=avg+nsigma*rms;
-     //  if (imageData[ip]>3000) imageData[ip]=3000.;
-     ip++;
-    }
-  }
-    cout << "MAXIMUM IS "<< max << endl;
-    cout << "AVERAGE IS "<< avg << endl;
-    cout << "RMS IS "<< rms << endl;
-
-    TASImage *imgLR=new TASImage 	( "imgLR",imageDataLR, 400, 200);//		TImagePalette *  	palette = 0 
-    new TCanvas();
-    imgLR->SetImageCompression(0);
-    imgLR->SetImageQuality(TAttImage::kImgBest);
-    // imgLR->Gray(kTRUE);
-    imgLR->Draw();
-
-
-    sprintf(nn,"%s_LR.tiff", name);
-
-    imgLR->WriteImage(nn, TImage::kTiff);	
-
-
- int nbx1=hg->GetNbinsX();
-int nby1=hg->GetNbinsY();
-Short_t *buffer1=new Short_t[nbx1];
-//   // cout << "Size of short int is "<<sizeof(char)<< endl;
-//   // cout << "width is "<<nbx<< endl;
-//   // cout << "height is "<<nby<< endl;
-  sprintf(nn,"%s_LR.bin", name);
- ofstream myFile1 (nn, ios::out | ios::binary);
- ip=0;
- for (int iy=0; iy<nby1; iy++) {
-   for (int ix=0; ix<nbx1; ix++) {
-     buffer1[ix]=imageDataLR[ip]*256/nsigma/avg;
-     ip++;
-   }
-   myFile1.write((char*)buffer1, nbx1*sizeof(Short_t));
- }
- myFile1.close();
-
- cout << sizeof(Short_t) << endl;
-    //for grating2D the gratings are in the pixels (150-260)x(80-190)
-
-
-
-
-//   //  hg->Draw("colz");
-//   int off=13;
-//   // hg->Divide(hpix);
-//   int ix,iy, sbx, sby, ibx2, iby2, sbx2, sby2;
-//   TH2F *hh13b=new TH2F("hh13b","hh13b",400*24,0,400,200*24,100,300);
-//   TH2F *hh13=new TH2F("hh13","hh13",400*23,0,400,200*23,100,300);
-//   TH2F *hh=new TH2F("hh","hh",400*21,0,400,200*21,100,300);
-//   TH2F *h1=new TH2F("h1","h1",400*23,0,400,200*23,100,300);
-//   for (int ibx=0; ibx<hg->GetNbinsX(); ibx++) {
-//     for (int iby=0; iby<hg->GetNbinsY(); iby++) {
-//       ix=(ibx-off)/25;
-//       iy=(iby-off)/25;
-//       sbx=(ibx-off)%25;
-//       sby=(iby-off)%25;
-//       sbx2=sbx-1;
-//       sby2=sby-1;
-//       if (sbx2<0) sbx2=0;
-//       if (sby2<0) sby2=0;
-//       if (sbx2>22) sbx2=22;
-//       if (sby2>22) sby2=22;
-//       ibx2=ix*23+(sbx2+off);
-//       iby2=iy*23+(sby2+off);
-
-//       hh13->Fill(hh13->GetXaxis()->GetBinCenter(ibx2+1),hh13->GetYaxis()->GetBinCenter(iby2+1),hg->GetBinContent(ibx+1,iby+1));
-//       //  h1->Fill(h1->GetXaxis()->GetBinCenter(ibx2+1),h1->GetYaxis()->GetBinCenter(iby2+1),hpix->GetBinContent(ibx+1,iby+1));
-
-//       off=13;
-
-//       ix=(ibx-off)/25;
-//       iy=(iby-off)/25;
-//       sbx=(ibx-off)%25;
-//       sby=(iby-off)%25;
-//       sbx2=sbx-1;
-//       sby2=sby-1;
-//       // if (sbx2<0) sbx2=0;
-//       // if (sby2<0) sby2=0;
-//       ibx2=ix*24+(sbx2+off);
-//       iby2=iy*24+(sby2+off);
-
-// 	if (sbx2<0 && sby2>=0) {
-// 	  ibx2=ix*24+(sbx2+off);
-// 	  hh13b->Fill(hh13b->GetXaxis()->GetBinCenter(ibx2+1),hh13b->GetYaxis()->GetBinCenter(iby2+1),0.5*hg->GetBinContent(ibx+1,iby+1));
-// 	  ibx2=ix*24+(sbx2+off)+1;
-// 	  hh13b->Fill(hh13b->GetXaxis()->GetBinCenter(ibx2+1),hh13b->GetYaxis()->GetBinCenter(iby2+1),0.5*hg->GetBinContent(ibx+1,iby+1));
-// 	} else if (sby2<0 && sbx2>=0){
-// 	  iby2=iy*24+(sby2+off);
-// 	  hh13b->Fill(hh13b->GetXaxis()->GetBinCenter(ibx2+1),hh13b->GetYaxis()->GetBinCenter(iby2+1),0.5*hg->GetBinContent(ibx+1,iby+1));
-// 	  iby2=iy*24+(sby2+off)+1;
-// 	  hh13b->Fill(hh13b->GetXaxis()->GetBinCenter(ibx2+1),hh13b->GetYaxis()->GetBinCenter(iby2+1),0.5*hg->GetBinContent(ibx+1,iby+1));
-// 	}  else if (sby2<0 && sbx2<0){
-// 	  iby2=iy*24+(sby2+off);
-// 	  ibx2=ix*24+(sbx2+off);
-// 	  hh13b->Fill(hh13b->GetXaxis()->GetBinCenter(ibx2+1),hh13b->GetYaxis()->GetBinCenter(iby2+1),0.25*hg->GetBinContent(ibx+1,iby+1));
-// 	  iby2=iy*24+(sby2+off)+1;
-// 	  ibx2=ix*24+(sbx2+off);
-// 	  hh13b->Fill(hh13b->GetXaxis()->GetBinCenter(ibx2+1),hh13b->GetYaxis()->GetBinCenter(iby2+1),0.25*hg->GetBinContent(ibx+1,iby+1));
-// 	  iby2=iy*24+(sby2+off);
-// 	  ibx2=ix*24+(sbx2+off)+1;
-// 	  hh13b->Fill(hh13b->GetXaxis()->GetBinCenter(ibx2+1),hh13b->GetYaxis()->GetBinCenter(iby2+1),0.25*hg->GetBinContent(ibx+1,iby+1));
-// 	  iby2=iy*24+(sby2+off)+1;
-// 	  ibx2=ix*24+(sbx2+off)+1;
-// 	  hh13b->Fill(hh13b->GetXaxis()->GetBinCenter(ibx2+1),hh13b->GetYaxis()->GetBinCenter(iby2+1),0.25*hg->GetBinContent(ibx+1,iby+1));
-// 	}else {
-
-
-// 	  hh13b->Fill(hh13b->GetXaxis()->GetBinCenter(ibx2+1),hh13b->GetYaxis()->GetBinCenter(iby2+1),hg->GetBinContent(ibx+1,iby+1));
-
-// 	}
-
-      
-
-//       ix=(ibx-off)/25;
-//       iy=(iby-off)/25;
-//       sbx=(ibx-off)%25;
-//       sby=(iby-off)%25;
-//       sbx2=sbx-2;
-//       sby2=sby-2;
-//       if (sbx2<0) sbx2=-1;
-//       if (sby2<0) sby2=-1;
-//       if (sbx2>20) sbx2=-1;
-//       if (sby2>20) sby2=-1;
-//       ibx2=ix*21+(sbx2+off);
-//       iby2=iy*21+(sby2+off);
-//       if (sbx2>=0 && sby2>=0)  hh->Fill(hh->GetXaxis()->GetBinCenter(ibx2+1),hh->GetYaxis()->GetBinCenter(iby2+1),hg->GetBinContent(ibx+1,iby+1));
-      
-//     }
-//   }  
-
-//   new TCanvas();
-//   hg->GetXaxis()->SetRangeUser(84,87);
-//   hg->GetYaxis()->SetRangeUser(120,124);
-//   hg->Draw("colz");
-  
-
-
-
-
-//   new TCanvas();
-//   //  hh->Divide(h1);
-//   hh->GetXaxis()->SetRangeUser(84,87);
-//   hh->GetYaxis()->SetRangeUser(120,124);
-//   hh->Draw("colz");
-
-
-//   new TCanvas();
-//   //  hh->Divide(h1);
-//   hh13b->GetXaxis()->SetRangeUser(84,87);
-//   hh13b->GetYaxis()->SetRangeUser(120,124);
-//   hh13b->Draw("colz");
-
-//   new TCanvas();
-//   //  hh->Divide(h1);
-//   hh13->GetXaxis()->SetRangeUser(84,87);
-//   hh13->GetYaxis()->SetRangeUser(120,124);
-//   hh13->Draw("colz");
-
-//   // //TFile fsg("/local_zfs_raid/tomcat_20160528/trees/img_sample_grating_1d_eta_gmap.root");
-//   // //TH2D *hsg=(TH2D*)fsg.Get("sample_grating_1dHR");
-//   // TFile fsg("/local_zfs_raid/tomcat_20160528/trees/img_sample_grating_1d_eta.root");
-//   // TH2D *hsg=(TH2D*)fsg.Get("imgHR");
-//   // hsg->SetName("imgGratingSample");
-
-
-//   // hsg->Divide(hpix);
-
-//   // Double_t nf=hff->Integral(100,hff->GetNbinsX()-100,hff->GetYaxis()->FindBin(130), hff->GetYaxis()->FindBin(140))/((hff->GetNbinsX()-200)*250);
-//   // hff->Scale(1./nf);
-
-//   // // hg->Divide(hff);
-//   // //hsg->Divide(hff);
-
-//   // Double_t ng=hg->Integral(100,hg->GetNbinsX()-100,hg->GetYaxis()->FindBin(130), hg->GetYaxis()->FindBin(140))/((hg->GetNbinsX()-200)*250);
-//   //  Double_t nsg=hsg->Integral(100,hsg->GetNbinsX()-100,hsg->GetYaxis()->FindBin(130), hsg->GetYaxis()->FindBin(140))/((hsg->GetNbinsX()-200)*250);
-
-//   //  hg->Scale(1/ng);
-//   //  hsg->Scale(1/nsg);
-
-//   //  // new TCanvas();
-//   //  // hg->SetMaximum(1.);
-//   //  // hg->Draw("colz");
-//   //  // new TCanvas();
-//   //  // hsg->SetMaximum(1.);
-//   //  // hsg->Draw("colz");
-   
-//   // //  TH1D *pg=hg->ProjectionX("pg",hg->GetYaxis()->FindBin(174.5)+1,hg->GetYaxis()->FindBin(175.5));
-//   // //  TH1D *psg=hsg->ProjectionX("psg",hsg->GetYaxis()->FindBin(174.5)+1,hsg->GetYaxis()->FindBin(175.5));
-//   // //  psg->SetLineColor(2);
-//   // // new TCanvas();
-  
-//   // // pg->Draw("l");
-//   // // psg->Draw("l same");
-  
-//   // int nbx=hg->GetNbinsX();
-//   // int nby=hg->GetNbinsY();
-//   // char buffer[nbx];
-//   // cout << "Size of short int is "<<sizeof(char)<< endl;
-//   // cout << "width is "<<nbx<< endl;
-//   // cout << "height is "<<nby<< endl;
-//   // ofstream myFile ("grating_1d.bin", ios::out | ios::binary);
-//   // for (int iy=0; iy<nby; iy++) {
-//   //   for (int ix=0; ix<nbx; ix++) {
-//   //     buffer[ix]=hg->GetBinContent(ix+1,iy+1);
-//   //   }
-//   //   myFile.write((char*)buffer, nbx*sizeof(char));
-//   // }
-//   // myFile.close();
-
-
-//   // nbx=hsg->GetNbinsX();
-//   // nby=hsg->GetNbinsY();
-
-//   // cout << "Size of short int is "<<sizeof(char)<< endl;
-//   // cout << "width is "<<nbx<< endl;
-//   // cout << "height is "<<nby<< endl;
-
-//   // ofstream myFile1 ("sample_grating_1d.bin", ios::out | ios::binary);
-//   // for (int iy=0; iy<nby; iy++) {
-//   //   for (int ix=0; ix<nbx; ix++) {
-//   //     buffer[ix]=hsg->GetBinContent(ix+1,iy+1);
-//   //   }
-//   //   myFile1.write((char*)buffer, nbx*sizeof(char));
-//   // }
-//   // myFile1.close();
-
-// // NAME
-// //        raw2tiff - create a TIFF file from a raw data
-
-// // SYNOPSIS
-// //        raw2tiff [ options ] input.raw output.tif
-
-// // DESCRIPTION
-// //        raw2tiff  converts  a  raw byte sequence into TIFF.  By default, the TIFF image is created with data samples packed (PlanarConfiguration=1), compressed with the PackBits algorithm (Compression=32773),
-// //        and with each strip no more than 8 kilobytes.  These characteristics can overridden, or explicitly specified with the options described below.
-
-// // OPTIONS
-// //        -H number
-// //               size of input image file header in bytes (0 by default). This amount of data just will be skipped from the start of file while reading.
-
-// //        -w number
-// //               width of input image in pixels (can be guessed, see GUESSING THE IMAGE GEOMETRY below).
-
-// //        -l number
-// //               length of input image in lines (can be guessed, see GUESSING THE IMAGE GEOMETRY below).
-
-// //        -b number
-// //               number of bands in input image (1 by default).
-
-// //        -d data_type
-// //               type of samples in input image, where data_type may be:
-// //               byte     8-bit unsigned integer (default),
-// //               short    16-bit unsigned integer,
-// //               long     32-bit unsigned integer,
-// //               sbyte    8-bit signed integer,
-// //               sshort   16-bit signed integer,
-// //               slong    32-bit signed integer,
-// //               float    32-bit IEEE floating point,
-// //               double   64-bit IEEE floating point.
-
-// //        -i config
-// //               type of samples interleaving in input image, where config may be:
-// //               pixel   pixel interleaved data (default),
-// //               band    band interleaved data.
-
-// //        -p photo
-// //               photometric interpretation (color space) of the input image, where photo may be:
-// //               miniswhite   white color represented with 0 value,
-// //               minisblack   black color represented with 0 value (default),
-// //               rgb          image has RGB color model,
-// //               cmyk         image has CMYK (separated) color model,
-// //               ycbcr        image has YCbCr color model,
-// //               cielab       image has CIE L*a*b color model,
-// //               icclab       image has ICC L*a*b color model,
-// //               itulab       image has ITU L*a*b color model.
-
-// //        -s     swap bytes fetched from the input file.
-
-// //        -L     input data has LSB2MSB bit order (default).
-
-// //        -M     input data has MSB2LSB bit order.
-
-// //        -c     Specify a compression scheme to use when writing image data: -c none for no compression, -c packbits for the PackBits compression algorithm (the default), -c jpeg for the baseline JPEG compres-
-// //               sion algorithm, -c zip for the Deflate compression algorithm, and -c lzw for Lempel-Ziv & Welch.
-
-// //        -r number
-// //               Write data with a specified number of rows per strip; by default the number of rows/strip is selected so that each strip is approximately 8 kilobytes.
-// //width is 10000
-// //height is 5000
-
-
-}
diff --git a/slsDetectorCalibration/etaVEL/imageMacroG2D.C b/slsDetectorCalibration/etaVEL/imageMacroG2D.C
deleted file mode 100644
index 6caa8eb31..000000000
--- a/slsDetectorCalibration/etaVEL/imageMacroG2D.C
+++ /dev/null
@@ -1,185 +0,0 @@
-{ 
-  TColor::InitializeColors();
-  const Int_t NRGBs = 5;
-  const Int_t NCont = 255;//90;
-
-  Double_t stops[NRGBs] = { 0.00, 0.34, 0.61, 0.84, 1.00 };
-  Double_t red[NRGBs]   = { 0.00, 0.00, 0.87, 1.00, 0.51 };
-  Double_t green[NRGBs] = { 0.00, 0.81, 1.00, 0.20, 0.00 };
-  Double_t blue[NRGBs]  = { 0.51, 1.00, 0.12, 0.00, 0.00 };
-  Double_t gray[NRGBs]  = { 1., 0.34, 0.61, 0.84, 1.00};
-  Double_t zero[NRGBs]  = { 0., 0.0,0.0, 0.0, 0.00};
-  //TColor::CreateGradientColorTable(NRGBs, stops, red, green, blue, NCont);
-   TColor::CreateGradientColorTable(NRGBs, stops, gray, gray, gray, NCont);
- 
-  gStyle->SetNumberContours(NCont);
-
-  gStyle->SetPadTopMargin(0);
-  gStyle->SetPadRightMargin(0);
-  gStyle->SetPadBottomMargin(0);
-  gStyle->SetPadLeftMargin(0);
-
-
-
-  gROOT->ForceStyle();
-
-  // TFile ff("/local_zfs_raid/tomcat_20160528/trees/img_blank_eta.root");
-  // TH2D *hff=(TH2D*)ff.Get("imgHR");
-  TFile ff("/mnt/moench_data/tomcat_20160528_img/img_blank_eta_nb25.root");
-  TH2D *hff=(TH2D*)ff.Get("blankHR");
-  hff->SetName("imgBlank");
-  TH2D *hpixel=new TH2D("hpixel","hpixel",25,0,25,25,0,25);
-  for (int ibx=10*25; ibx<hff->GetNbinsX()-10*25; ibx++) {
-    for (int iby=20*25; iby<hff->GetNbinsY()-20*25; iby++) {
-      hpixel->Fill((ibx-12)%25,(iby-12)%25,hff->GetBinContent(ibx+1,iby+1));
-    }
-  }
-  hpixel->Scale(1./hpixel->GetBinContent(13,13));
-
-  // new TCanvas();
-  // hpixel->Draw("colz"); 
-
-  TH2D *hraw=(TH2D*)hff->Clone("hraw");
-  TH2D *hpix=(TH2D*)hff->Clone("hpix");
-
-  for (int ibx=0; ibx<hff->GetNbinsX(); ibx++) {
-    for (int iby=0; iby<hff->GetNbinsY(); iby++) {
-      hpix->SetBinContent(ibx+1,iby+1,hpixel->GetBinContent(hpixel->GetXaxis()->FindBin((ibx-12)%25),hpixel->GetXaxis()->FindBin((iby-12)%25)));
-    }
-  }
-
-  hff->Divide(hpix);
-
-  //  new TCanvas();
-  // hff->Draw("colz");
-
-
-  // TFile fg("/local_zfs_raid/tomcat_20160528/trees/img_grating_2d_eta.root");
-  // TH2D *hg=(TH2D*)fg.Get("imgHR");
-  TFile fg("/mnt/moench_data/tomcat_20160528_img/img_grating_2d_eta_nb25.root");
-  TH2D *hg=(TH2D*)fg.Get("grating_2dHR");
-  hg->SetName("imgGrating");
-
-  hg->Divide(hpix);
-
-
-
-  Double_t nf=hff->Integral(100,hff->GetNbinsX()-100,hff->GetYaxis()->FindBin(130), hff->GetYaxis()->FindBin(140))/((hff->GetNbinsX()-200)*250);
-  hff->Scale(1./nf);
-
-  // hg->Divide(hff);
-  //hsg->Divide(hff);
-
-  Double_t ng=hg->Integral(100,hg->GetNbinsX()-100,hg->GetYaxis()->FindBin(130), hg->GetYaxis()->FindBin(140))/((hg->GetNbinsX()-200)*250);
- 
-   hg->Scale(1/ng);
-
-   new TCanvas("c1","c1",800,800);
-   hg->SetMaximum(2.);
-   Double_t xmin=hg->GetXaxis()->GetXmin();
-   Double_t xmax=hg->GetXaxis()->GetXmax();
-   Double_t ymin=hg->GetYaxis()->GetXmin();
-   Double_t ymax=hg->GetYaxis()->GetXmax();
-   hg->SetTitle(";mm;mm;Normalized intensity (a.u.)");
-   hg->GetXaxis()->Set(hg->GetXaxis()->GetNbins(),xmin*0.025-180.*0.025+0.1,xmax*0.025-180.*0.025+0.1);
-   hg->GetYaxis()->Set(hg->GetYaxis()->GetNbins(),ymin*0.025-180.*0.025-1.5,ymax*0.025-180*0.025-1.5);
-   
-   hg->GetXaxis()->SetRangeUser(0,0.5);
-   hg->GetYaxis()->SetRangeUser(0,0.5);
-   
-   hg->Draw("col");
-   hg->SetStats(kFALSE);
-   // new TCanvas();
-   // hsg->SetMaximum(1.);
-   // hsg->Draw("colz");
-   
-  //  TH1D *pg=hg->ProjectionX("pg",hg->GetYaxis()->FindBin(174.5)+1,hg->GetYaxis()->FindBin(175.5));
-  //  TH1D *psg=hsg->ProjectionX("psg",hsg->GetYaxis()->FindBin(174.5)+1,hsg->GetYaxis()->FindBin(175.5));
-  //  psg->SetLineColor(2);
-  // new TCanvas();
-  
-  // pg->Draw("l");
-  // psg->Draw("l same");
-  
-  int nbx=hg->GetNbinsX();
-  int nby=hg->GetNbinsY();
-  char buffer[nbx];
-  cout << "Size of short int is "<<sizeof(char)<< endl;
-  cout << "width is "<<nbx<< endl;
-  cout << "height is "<<nby<< endl;
-  ofstream myFile ("grating_2d.bin", ios::out | ios::binary);
-  for (int iy=0; iy<nby; iy++) {
-    for (int ix=0; ix<nbx; ix++) {
-      buffer[ix]=hg->GetBinContent(ix+1,iy+1);
-    }
-    myFile.write((char*)buffer, nbx*sizeof(char));
-  }
-  myFile.close();
-
-
-// NAME
-//        raw2tiff - create a TIFF file from a raw data
-
-// SYNOPSIS
-//        raw2tiff [ options ] input.raw output.tif
-
-// DESCRIPTION
-//        raw2tiff  converts  a  raw byte sequence into TIFF.  By default, the TIFF image is created with data samples packed (PlanarConfiguration=1), compressed with the PackBits algorithm (Compression=32773),
-//        and with each strip no more than 8 kilobytes.  These characteristics can overridden, or explicitly specified with the options described below.
-
-// OPTIONS
-//        -H number
-//               size of input image file header in bytes (0 by default). This amount of data just will be skipped from the start of file while reading.
-
-//        -w number
-//               width of input image in pixels (can be guessed, see GUESSING THE IMAGE GEOMETRY below).
-
-//        -l number
-//               length of input image in lines (can be guessed, see GUESSING THE IMAGE GEOMETRY below).
-
-//        -b number
-//               number of bands in input image (1 by default).
-
-//        -d data_type
-//               type of samples in input image, where data_type may be:
-//               byte     8-bit unsigned integer (default),
-//               short    16-bit unsigned integer,
-//               long     32-bit unsigned integer,
-//               sbyte    8-bit signed integer,
-//               sshort   16-bit signed integer,
-//               slong    32-bit signed integer,
-//               float    32-bit IEEE floating point,
-//               double   64-bit IEEE floating point.
-
-//        -i config
-//               type of samples interleaving in input image, where config may be:
-//               pixel   pixel interleaved data (default),
-//               band    band interleaved data.
-
-//        -p photo
-//               photometric interpretation (color space) of the input image, where photo may be:
-//               miniswhite   white color represented with 0 value,
-//               minisblack   black color represented with 0 value (default),
-//               rgb          image has RGB color model,
-//               cmyk         image has CMYK (separated) color model,
-//               ycbcr        image has YCbCr color model,
-//               cielab       image has CIE L*a*b color model,
-//               icclab       image has ICC L*a*b color model,
-//               itulab       image has ITU L*a*b color model.
-
-//        -s     swap bytes fetched from the input file.
-
-//        -L     input data has LSB2MSB bit order (default).
-
-//        -M     input data has MSB2LSB bit order.
-
-//        -c     Specify a compression scheme to use when writing image data: -c none for no compression, -c packbits for the PackBits compression algorithm (the default), -c jpeg for the baseline JPEG compres-
-//               sion algorithm, -c zip for the Deflate compression algorithm, and -c lzw for Lempel-Ziv & Welch.
-
-//        -r number
-//               Write data with a specified number of rows per strip; by default the number of rows/strip is selected so that each strip is approximately 8 kilobytes.
-//width is 10000
-//height is 5000
-
-
-}
diff --git a/slsDetectorCalibration/etaVEL/imageMacroSample.C b/slsDetectorCalibration/etaVEL/imageMacroSample.C
deleted file mode 100644
index 5fced606c..000000000
--- a/slsDetectorCalibration/etaVEL/imageMacroSample.C
+++ /dev/null
@@ -1,173 +0,0 @@
-{
-  // TFile ff("/local_zfs_raid/tomcat_20160528/trees/img_blank_eta.root");
-  // TH2D *hff=(TH2D*)ff.Get("imgHR");
-  // TFile ff("/local_zfs_raid/tomcat_20160528/trees/img_blank_eta_gmap_v2.root");
-  // TH2D *hff=(TH2D*)ff.Get("blankHR");
-  // hff->SetName("imgBlank");
-  // TH2D *hpixel=new TH2D("hpixel","hpixel",25,0,25,25,0,25);
-  // for (int ibx=10*25; ibx<hff->GetNbinsX()-10*25; ibx++) {
-  //   for (int iby=20*25; iby<hff->GetNbinsY()-20*25; iby++) {
-  //     hpixel->Fill((ibx-12)%25,(iby-12)%25,hff->GetBinContent(ibx+1,iby+1));
-  //   }
-  // }
-  // hpixel->Scale(1./hpixel->GetBinContent(13,13));
-
-  // // new TCanvas();
-  // // hpixel->Draw("colz"); 
-
-  // TH2D *hraw=(TH2D*)hff->Clone("hraw");
-  // TH2D *hpix=(TH2D*)hff->Clone("hpix");
-
-  // for (int ibx=0; ibx<hff->GetNbinsX(); ibx++) {
-  //   for (int iby=0; iby<hff->GetNbinsY(); iby++) {
-  //     hpix->SetBinContent(ibx+1,iby+1,hpixel->GetBinContent(hpixel->GetXaxis()->FindBin((ibx-12)%25),hpixel->GetXaxis()->FindBin((iby-12)%25)));
-  //   }
-  // }
-
-  // hff->Divide(hpix);
-
-  // Double_t nf=hff->Integral(100,hff->GetNbinsX()-100,hff->GetYaxis()->FindBin(130), hff->GetYaxis()->FindBin(140))/((hff->GetNbinsX()-200)*250);
-  // hff->Scale(1./nf);
-
-  //  new TCanvas();
-  // hff->Draw("colz");
-
-
-  // TFile fg("/local_zfs_raid/tomcat_20160528/trees/img_grating_2d_eta.root");
-  // TH2D *hg=(TH2D*)fg.Get("imgHR");
-  TFile fg("/mnt/moench_data/tomcat_20160528_img/img_sample_eta_gmap_v2.root");
-  TH2D *hg=(TH2D*)fg.Get("sampleHR");
-  hg->SetName("imgSample");
-
-  // hg->Divide(hpix);
-
-
-
-
-  // hg->Divide(hff);
-  //hsg->Divide(hff);
-
-  Double_t ng=hg->Integral(100,hg->GetNbinsX()-100,hg->GetYaxis()->FindBin(130), hg->GetYaxis()->FindBin(140))/((hg->GetNbinsX()-200)*250);
- 
-   hg->Scale(1/ng);
-
-   // new TCanvas();
-   // hsg->SetMaximum(1.);
-   // hsg->Draw("colz");
-   
-  //  TH1D *pg=hg->ProjectionX("pg",hg->GetYaxis()->FindBin(174.5)+1,hg->GetYaxis()->FindBin(175.5));
-  //  TH1D *psg=hsg->ProjectionX("psg",hsg->GetYaxis()->FindBin(174.5)+1,hsg->GetYaxis()->FindBin(175.5));
-  //  psg->SetLineColor(2);
-  // new TCanvas();
-  
-  // pg->Draw("l");
-  // psg->Draw("l same");
-   TH2D *hpixel1=new TH2D("hpixel1","hpixel1",25,0,25,25,0,25);
-  for (int ibx=10*25; ibx<35*25; ibx++) {
-    for (int iby=25*25; iby<50*25; iby++) {
-      hpixel1->Fill((ibx-12)%25,(iby-12)%25,hg->GetBinContent(ibx+1,iby+1));
-    }
-  }
-  hpixel1->Scale(1./hpixel1->GetBinContent(13,13));
-
-  // new TCanvas();
-  // hpixel->Draw("colz"); 
-
-  TH2D *hpix1=(TH2D*)hg->Clone("hpix1");
-
-  for (int ibx=0; ibx<hg->GetNbinsX(); ibx++) {
-    for (int iby=0; iby<hg->GetNbinsY(); iby++) {
-      hpix1->SetBinContent(ibx+1,iby+1,hpixel1->GetBinContent(hpixel1->GetXaxis()->FindBin((ibx-12)%25),hpixel1->GetXaxis()->FindBin((iby-12)%25)));
-    }
-  }
-
-  hg->Divide(hpix1);
-
-  new TCanvas();
-  hg->SetMaximum(4);
-  hg->SetMinimum(0.5);
-  hg->Draw("colz");
-  
-
-  int nbx=hg->GetNbinsX();
-  int nby=hg->GetNbinsY();
-  char buffer[nbx];
-  cout << "Size of short int is "<<sizeof(char)<< endl;
-  cout << "width is "<<nbx<< endl;
-  cout << "height is "<<nby<< endl;
-  ofstream myFile ("sample.bin", ios::out | ios::binary);
-  for (int iy=0; iy<nby; iy++) {
-    for (int ix=0; ix<nbx; ix++) {
-      buffer[ix]=hg->GetBinContent(ix+1,iy+1);
-    }
-    myFile.write((char*)buffer, nbx*sizeof(char));
-  }
-  myFile.close();
-
-
-// NAME
-//        raw2tiff - create a TIFF file from a raw data
-
-// SYNOPSIS
-//        raw2tiff [ options ] input.raw output.tif
-
-// DESCRIPTION
-//        raw2tiff  converts  a  raw byte sequence into TIFF.  By default, the TIFF image is created with data samples packed (PlanarConfiguration=1), compressed with the PackBits algorithm (Compression=32773),
-//        and with each strip no more than 8 kilobytes.  These characteristics can overridden, or explicitly specified with the options described below.
-
-// OPTIONS
-//        -H number
-//               size of input image file header in bytes (0 by default). This amount of data just will be skipped from the start of file while reading.
-
-//        -w number
-//               width of input image in pixels (can be guessed, see GUESSING THE IMAGE GEOMETRY below).
-
-//        -l number
-//               length of input image in lines (can be guessed, see GUESSING THE IMAGE GEOMETRY below).
-
-//        -b number
-//               number of bands in input image (1 by default).
-
-//        -d data_type
-//               type of samples in input image, where data_type may be:
-//               byte     8-bit unsigned integer (default),
-//               short    16-bit unsigned integer,
-//               long     32-bit unsigned integer,
-//               sbyte    8-bit signed integer,
-//               sshort   16-bit signed integer,
-//               slong    32-bit signed integer,
-//               float    32-bit IEEE floating point,
-//               double   64-bit IEEE floating point.
-
-//        -i config
-//               type of samples interleaving in input image, where config may be:
-//               pixel   pixel interleaved data (default),
-//               band    band interleaved data.
-
-//        -p photo
-//               photometric interpretation (color space) of the input image, where photo may be:
-//               miniswhite   white color represented with 0 value,
-//               minisblack   black color represented with 0 value (default),
-//               rgb          image has RGB color model,
-//               cmyk         image has CMYK (separated) color model,
-//               ycbcr        image has YCbCr color model,
-//               cielab       image has CIE L*a*b color model,
-//               icclab       image has ICC L*a*b color model,
-//               itulab       image has ITU L*a*b color model.
-
-//        -s     swap bytes fetched from the input file.
-
-//        -L     input data has LSB2MSB bit order (default).
-
-//        -M     input data has MSB2LSB bit order.
-
-//        -c     Specify a compression scheme to use when writing image data: -c none for no compression, -c packbits for the PackBits compression algorithm (the default), -c jpeg for the baseline JPEG compres-
-//               sion algorithm, -c zip for the Deflate compression algorithm, and -c lzw for Lempel-Ziv & Welch.
-
-//        -r number
-//               Write data with a specified number of rows per strip; by default the number of rows/strip is selected so that each strip is approximately 8 kilobytes.
-//width is 10000
-//height is 5000
-
-
-}
diff --git a/slsDetectorCalibration/etaVEL/interpolationMacro.C b/slsDetectorCalibration/etaVEL/interpolationMacro.C
deleted file mode 100644
index aebbb04d7..000000000
--- a/slsDetectorCalibration/etaVEL/interpolationMacro.C
+++ /dev/null
@@ -1,3109 +0,0 @@
-#include <TH1D.h>
-#include <TH2D.h>
-#include <TPad.h>
-#include <TDirectory.h>
-#include <TEntryList.h>
-#include <TFile.h>
-#include <TMath.h>
-#include <TTree.h>
-#include <TChain.h>
-#include <TStyle.h>
-#include <THStack.h>
-#include <TCanvas.h>
-#include <TROOT.h>
-#include <TMultiGraph.h>
-#include <TF1.h>
-#include <TLegend.h>
-#include <stdio.h>
-#include <iostream>
-#include <deque>
-#include <list>
-#include <queue>
-#include <fstream>
-#include <TPaletteAxis.h>
-//#include "interpolation_EtaVEL.h"
-#include "interpolation_etaVEL.cpp"
-#include "../energyCalibration.cpp"
-
-/*
-Zum erstellen der correction map ist createGainAndEtaFile(...)  in EVELAlg.C der entry point.
-Zum erstellen des HR images ist createImage(...) der entry point.
-*/
-#define YMIN 100
-#define XMIN 0
-#define NX 400
-#define NY 200
-
-// sets nice plotting settings
-int rootlogon ()
-{
-  gStyle->SetDrawBorder(0);
-  gStyle->SetCanvasColor(kWhite);     
-  gStyle->SetCanvasDefH(800);
-  gStyle->SetCanvasDefW(800);
-  gStyle->SetCanvasBorderMode(0);     
-  gStyle->SetPadBorderMode(0);
-  gStyle->SetPaintTextFormat("5.2f"); 
-  gStyle->SetLineWidth(2);
-  gStyle->SetTextSize(1.1);
-  gStyle->SetLabelSize(0.04,"xy");
-  gStyle->SetTitleSize(0.05,"xy");
-  gStyle->SetTitleOffset(1.0,"x");
-  gStyle->SetTitleOffset(1.6,"y");
-  gStyle->SetPadTopMargin(0.05);
-  gStyle->SetPadRightMargin(0.05);
-  gStyle->SetPadBottomMargin(0.15);
-  gStyle->SetPadLeftMargin(0.15);
-  gStyle->SetLegendBorderSize(1);
-  gStyle->SetFrameBorderMode(0);
-  gStyle->SetFrameFillColor(kWhite);
-  gStyle->SetTitleFillColor(kWhite);
-  gStyle->SetStatFontSize(0.03);
-  gStyle->SetStatBorderSize(1);
-  gStyle->SetStatFormat("6.4g");
-  gStyle->SetStatX(0.95);
-  gStyle->SetStatY(0.95);
-  gStyle->SetStatW(0.2);
-  gStyle->SetStatH(0.2);
-  gStyle->SetStatColor(kWhite);
-  gStyle->SetTitleX(0.3);
-  gStyle->SetTitleY(0.98);
-  gStyle->SetTitleBorderSize(1);
-  gStyle->SetTitleFontSize(0.06);
-  gStyle->SetLegendBorderSize(1);
-  gROOT->SetStyle("Default");
-  gROOT->ForceStyle();          
-  return 0;
-
-}
-
-
-interpolation_EtaVEL *fillEta(TChain *ch, Long64_t nentries=-1, TH2F *gmap=NULL, THStack *hs=NULL){
-
-  //  if (nentries<0)
-  //  nentries=ch->GetEntries();
-
-  //  cout << "Chain has " << nentries << " entries " << endl;
-
-
-
-  Long64_t ie;
-
-  Double_t dum[9],   data[9], gain=1;
-  Int_t x, y, f, ix, iy;
-  interpolation_EtaVEL *inte= new interpolation_EtaVEL(400, 200, 25, -0.05,1.05);
-  int skip=0;
-  TEntryList  *myelist=ch->GetEntryList();
-  Long64_t listEntries = myelist->GetN();
-  Double_t rr;
-  Long64_t treeEntry, chainEntry;
-  Int_t treenum;
-  TCanvas *c1=new TCanvas();
-  int corn;
-  TH1D *h1=NULL, *h2=NULL, *h3=NULL;
-  TH2F *heta=NULL, *hetaL=NULL, *heta3=NULL, *heta3X=NULL, *hcorn=NULL ;
-  Double_t tot, totquad, sDum[2][2];
-  Double_t etax, etay, etaxL, etayL, etax3, etay3,etax3x, etay3x,r ;
-  heta=inte->setEta((TH2F*)NULL);
-
-  if (hs) {    
-    hetaL=(TH2F*)(heta->Clone("hetaL"));
-    heta3=(TH2F*)(heta->Clone("heta3")); 
-    heta3X=(TH2F*)(heta->Clone("heta3X")); 
-    h1=new TH1D("h1","h1",1000,0,3);
-    h2=new TH1D("h2","h2",1000,0,3);
-    h3=new TH1D("h3","h3",1000,0,3);
-    hcorn=new TH2F("hcorn","hcorn",2,-1,1,2,-1,1);
-    hs->Add(heta);
-    hs->Add(hetaL);
-    hs->Add(heta3);
-    hs->Add(heta3X);
-    hs->Add(h1);
-    hs->Add(h2);
-    hs->Add(h3);
-    hs->Add(hcorn);
-    
-  }
-
-  cout << "List has " << listEntries*1E-6 << "M entries " << endl;
-
-  ch->SetBranchAddress("iFrame",&f);
-  ch->SetBranchAddress("x",&x);
-  ch->SetBranchAddress("y",&y);
-  ch->SetBranchAddress("data",dum);
-  
-  for (Long64_t el = 0; el < listEntries; el++) {
-    treeEntry = myelist->GetEntryAndTree(el,treenum);
-    chainEntry = treeEntry+ch->GetTreeOffset()[treenum];
-   
-    if (ch->GetEntry(chainEntry)) {
-      if (el%1000000==0) {
-	inte->DrawH();
-	c1->Modified();
-	c1->Update();
-	cout << "+";
-      }
-      skip=0;
-      for (ix=0; ix<3; ix++) {
-	if (skip==0) {
-	  for (iy=0; iy<3; iy++) {
-	    if (gmap==NULL) {
-	      data[ix+iy*3]=dum[ix+iy*3];
-	    } else {
-	      gain=gmap->GetBinContent(x+ix, y+iy);
-	      if (gain>2000 && gain<3000) {
-		data[ix+iy*3]=dum[ix+iy*3]/gain;
-		//	cout << dum[ix+iy*3] << " " << gain << " " << data[ix+iy*3] << endl;
-	      } else
-		skip=1;
-	    }
-	  }
-	}
-      }
-      if (skip==0) {
-	if (heta==NULL)
-	  inte->addToFlatField(data,etax,etay);
-	else {
-	  corn=slsInterpolation::calcQuad(data, tot, totquad, sDum);
-	  if (tot>0) {
-	    r=totquad/tot;
-	    // cout << totquad<< " " << tot << endl;
-	    if (r>0.8 && r<1.2) {
-	      slsInterpolation::calcEta(totquad, sDum, etax, etay);
-	      heta->Fill(etax,etay);
-	      slsInterpolation::calcEtaL(totquad, corn, sDum, etaxL, etayL);
-	      if (hetaL) hetaL->Fill(etaxL,etayL);
-	      slsInterpolation::calcEta3(data, etax3, etay3, tot);
-	      if (heta3) heta3->Fill(etax3,etay3);
-	      slsInterpolation::calcEta3X(data, etax3x, etay3x, tot);
-	      if (heta3X) heta3X->Fill(etax3x,etay3x);
-	      
-	      if (h1) h1->Fill(data[4]);
-	      if (h2) h2->Fill(totquad);
-	      if (h3) h3->Fill(tot);
-	      if (hcorn) {
-		switch(corn) {
-		case TOP_LEFT:
-		  hcorn->Fill(-0.5,0.5);
-		  break;
-		case TOP_RIGHT:
-		  hcorn->Fill(0.5,0.5);
-		  break;
-		case BOTTOM_LEFT:
-		  hcorn->Fill(-0.5,-0.5);
-		  break;
-		case BOTTOM_RIGHT:
-		  hcorn->Fill(0.5,-0.5);
-		  break;
-		default:
-		  break;
-		}
-	      
-	      }
-	    }
-	  }
-	}
-      }
-    }
-  }
-
-  // inte->DrawH();
-  // c1->Modified();
-  // c1->Update();
-  // cout << "+";
-  return inte;
-}
-
-
-
-
-TH2F *makeSpectrum(TChain *ch, Long64_t nentries=-1) {
-  Long64_t ie;
-  Double_t dum[9],  etax, etay;
-  Int_t x, y, f;
-  Double_t sum, totquad, sDum[2][2];
-  // if (nentries<0)
-  //   nentries=ch->GetEntries();
-  //  cout << "Chain has " << nentries*1E-6 << "M entries " << endl;
-  TH2F *h1=new TH2F("h1","h1",1000,0,5000,NY*NX,0,NY*NX);
- 
-  TCanvas *c1=new TCanvas();
-  h1->Draw("colz");
-  TEntryList  *myelist=ch->GetEntryList();
-  Long64_t listEntries = myelist->GetN();
-
-  ch->SetBranchAddress("iFrame",&f);
-  ch->SetBranchAddress("x",&x);
-  ch->SetBranchAddress("y",&y);
-  ch->SetBranchAddress("data",dum);
-
-  Long64_t treeEntry, chainEntry;
-  Int_t treenum;
-
-  cout << "List has " << listEntries*1E-6 << "M entries " << endl;
-
-  for (Long64_t el = 0; el < listEntries; el++) {
-    treeEntry = myelist->GetEntryAndTree(el,treenum);
-    chainEntry = treeEntry+ch->GetTreeOffset()[treenum];
-   
-    if (ch->GetEntry(chainEntry)) {
-      if (el%1000000==0) {
-	c1->Modified();
-	c1->Update();
-	cout << "+";
-      }
-      h1->Fill(dum[4],(y-YMIN)*NX+x-XMIN); 
-    }
-  }
-  return h1;
-}
-
-TChain *discardDoubles(TChain *ch, int xmin=0, int xmax=400, int ymin=0, int ymax=400, Double_t smin=2000, Double_t smax=3000, Long64_t nentries=-1) {
-
-  TEntryList *elist=new TEntryList(ch);
-  // TEntryList *elist1=new TEntryList(ch);
-  elist->SetName("nodoubles");
-  if (nentries<0)
-    nentries=ch->GetEntries();
-  Long64_t ie, ie0, iemax, i;
-  Double_t dum[9], tot;
-  Int_t x, y, f, ix, iy;
-
-  ch->SetBranchAddress("iFrame",&f);
-  ch->SetBranchAddress("x",&x);
-  ch->SetBranchAddress("y",&y);
-  ch->SetBranchAddress("data",dum);
-  
-  TH2I *hf=new TH2I("hf","frame",xmax-xmin, xmin, xmax, ymax-ymin, ymin, ymax);
-
-  Int_t ff=-1, bad=0;
-  Int_t ibad, igood, iph;
-   TCanvas *c1=new TCanvas();
-
-  for (ie=0; ie<nentries; ie++) {
-    // cout << ie;
-    hf->Reset();
-    ie0=ie;
-    iemax=ie0;
-    iph=0;
-    while (ff==-1 || f==ff) {
-      // cout << f << " " << ff << endl;
-      ch->GetEntry(iemax);
-      iemax++;
-      iph++;
-      if (ff<0) ff=f;
-
-      for (ix=-1; ix<2; ix++)
-	for (iy=-1; iy<2; iy++)
-	  hf->Fill(x+ix, y+iy);
-      // if (iph>160000) break; 
-    }
-    //  cout <<"*************************************"<<  iemax<< " " << ie0 << " " << ff << " " << f << " " << iph<< endl;
-      hf->Draw("colz");
-    c1->Modified();
-    c1->Update();
-    
-    ibad=0;
-    igood=0;
-    for (i=ie0; i<iemax; i++) {
-      bad=0;
-      ch->GetEntry(i);
-      tot=0;
-      for (ix=-1; ix<2; ix++) {
-	for (iy=-1; iy<2; iy++) {
-	  tot+=dum[ix+1+(iy+1)*3];
-	  if (hf->GetBinContent(x+ix-xmin+1, y+iy-ymin+1)>1.1) {
-	    // cout << "Bad " << x+ix<< " " << y+iy << endl;
-	    bad=1;
-	  }
-	}
-      }
-       if (tot<=smin || tot>=smax) {
-       	bad=1;
-      // 	//	cout << "Bad Tot "<< tot << endl;
-       }
-      if (bad==0) {
-	elist->Enter(i,ch); 
-	igood++;
-      } else {
-	ibad++;
-      }
-      
-    }
-    if (f%10000==0)
-      cout << "Frame " << f << " good " << igood << " bad " << ibad << endl;
-    
-    ff=-1;
-    ie=i;
-    //
-  }
-
-  //  delete hf;
-  ch->SetEntryList(elist);
-  return ch;
-}
-
-TChain *discardDoublesQuad(TChain *ch, int xmin=0, int xmax=400, int ymin=0, int ymax=400, Double_t smin=2000, Double_t smax=3000, Long64_t nentries=-1) {
-
-  TEntryList *elist=new TEntryList(ch);
-  // TEntryList *elist1=new TEntryList(ch);
-  elist->SetName("nodoubles");
-  if (nentries<0)
-    nentries=ch->GetEntries();
-  Long64_t ie, ie0, iemax, i;
-  Double_t dum[9], tot, totquad, sDum[2][2];
-  Int_t x, y, f, ix, iy, corn;
-
-  ch->SetBranchAddress("iFrame",&f);
-  ch->SetBranchAddress("x",&x);
-  ch->SetBranchAddress("y",&y);
-  ch->SetBranchAddress("data",dum);
-  
-  TH2I *hf=new TH2I("hf","frame",xmax-xmin, xmin, xmax, ymax-ymin, ymin, ymax);
-
-  Int_t ff=-1, bad=0;
-  Int_t ibad, igood, iph;
-  //  TCanvas *c1=new TCanvas();
-
-  for (ie=0; ie<nentries; ie++) {
-    // cout << ie;
-    hf->Reset();
-    ie0=ie;
-    iemax=ie0;
-    iph=0;
-    while (ff==-1 || f==ff) {
-      // cout << f << " " << ff << endl;
-      ch->GetEntry(iemax);
-      iemax++;
-      iph++;
-      if (ff<0) ff=f;
-      corn=slsInterpolation::calcQuad(dum, tot, totquad, sDum);
-      // for (ix=-1; ix<2; ix++)
-      //	for (iy=-1; iy<2; iy++)
-      //	  hf->Fill(x+ix, y+iy);
-      // if (iph>160000) break; 
-      hf->Fill(x,y);
-	switch(corn) {
-	case TOP_LEFT:
-	  hf->Fill(x-1,y);
-	  hf->Fill(x-1,y+1);
-	  hf->Fill(x,y+1);
-	  break;
-	case TOP_RIGHT:
-	  hf->Fill(x+1,y);
-	  hf->Fill(x+1,y+1);
-	  hf->Fill(x,y+1);
-	  break;
-	case BOTTOM_LEFT:
-	  hf->Fill(x-1,y);
-	  hf->Fill(x-1,y-1);
-	  hf->Fill(x,y-1);
-	  break;
-	case BOTTOM_RIGHT:
-	  hf->Fill(x+1,y);
-	  hf->Fill(x+1,y-1);
-	  hf->Fill(x,y-1);
-	  break;
-	default:
-	  break;
-	}
-    }
-    //  cout <<"*************************************"<<  iemax<< " " << ie0 << " " << ff << " " << f << " " << iph<< endl;
-    //     hf->Draw("colz");
-    // c1->Modified();
-    // c1->Update();
-    
-    ibad=0;
-    igood=0;
-    for (i=ie0; i<iemax; i++) {
-      bad=0;
-      ch->GetEntry(i);
-      tot=0;
-      for (ix=-1; ix<2; ix++) {
-	for (iy=-1; iy<2; iy++) {
-	  tot+=dum[ix+1+(iy+1)*3];
-	  if (hf->GetBinContent(x+ix-xmin+1, y+iy-ymin+1)>1.1) {
-	    // cout << "Bad " << x+ix<< " " << y+iy << endl;
-	    bad=1;
-	  }
-	}
-      }
-       if (tot<=smin || tot>=smax) {
-       	bad=1;
-      // 	//	cout << "Bad Tot "<< tot << endl;
-       }
-      if (bad==0) {
-	elist->Enter(i,ch); 
-	igood++;
-      } else {
-	ibad++;
-      }
-      
-    }
-    if (f%10000==0)
-      cout << "Frame " << f << " good " << igood << " bad " << ibad << endl;
-    
-    ff=-1;
-    ie=i;
-    //
-  }
-
-    delete hf;
-  ch->SetEntryList(elist);
-  return ch;
-}
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-TH2F *gainMap(TH2F *h1) {
-  TH1D *hh;
-  // fspixel->SetParNames("Background Pedestal","Background slope", "Peak position","Noise RMS", "Number of Photons","Charge Sharing Pedestal","Corner");
-  Double_t par[7], epar[7];
-  TH2F *gmap=new TH2F("gmap","gmap",NX,XMIN,XMIN+NX,NY,YMIN,YMIN+NY);
-  int ix, iy;
-  energyCalibration *ecal=new energyCalibration();
-  ecal->fixParameter(0,0);
-  ecal->fixParameter(1,0);
-  ecal->setScanSign(1);
-  ecal->setFitRange(2000,3000);
-  ecal->setPlotFlag(0);
-  for (int ich=0; ich<h1->GetNbinsY(); ich++) {
-    hh=h1->ProjectionX("hh",ich+1,ich+1);
-    if (hh->GetEntries()>10000) {
-      par[0]=0;
-      par[1]=0;
-      par[2]=2500;
-      par[3]=20;
-      par[4]=1000;
-      par[5]=0.1;
-      par[6]-0.1;
-      ecal->setStartParameters(par);
-      if (ecal->fitSpectrumPixel(hh,par, epar)) {
-	if (par[2]>2000 && par[2]<3000) {
-	  ix=ich%NX+XMIN;
-	  iy=ich/NX+YMIN;
-	  gmap->SetBinContent(ix+1-XMIN,iy+1-YMIN,par[2]);
-	}
-      }
-      
-    }
-    delete hh;
-  }
-
-  return gmap;
-
-}
-TChain *m1() {
-  Long64_t nen=1000000000; //-1;
-  rootlogon();
-  TChain *ch=new TChain("blank");
-
-  ch->Add("/local_zfs_raid/tomcat_20160528/trees/blank_*.root");
-  discardDoublesQuad(ch, 0, 400, 100, 300, 2000, 3000, nen);
-  TFile *fout=new TFile("/local_zfs_raid/tomcat_20160528/trees/elist.root", "RECREATE");
-  TEntryList *elist=ch->GetEntryList();
-  elist->Write("nodoubles",TObject::kOverwrite);
-  fout->Close();
-
-  return ch;
-
-}
-
-
-void mm() {
-
-  int nen=1000000; //-1
-
-  rootlogon();
-  // TFile *fout=new TFile("/local_zfs_raid/tomcat_20160528/trees/gmap_eta_blank.root", "RECREATE"); 
-
-
-  TFile *fL=new TFile("/local_zfs_raid/tomcat_20160528/trees/elist.root");
-  TEntryList *elist =(TEntryList*)fL->Get("nodoubles");
-
-  TFile *fg=new TFile("/local_zfs_raid/tomcat_20160528/trees/gmap_eta_blank.root");
-  TH2F *gmap=(TH2F*)fg->Get("gmap");
-  
-  TChain *ch=new TChain("blank");
-
-  ch->Add("/local_zfs_raid/tomcat_20160528/trees/blank_*.root");
-
-  //  cout << "Chain has " << ch->GetEntries()*1E-6 << "M entries " << endl;
-  cout << "creating entry list"<< endl;
-  // ch->Draw(">>elist", "Sum$(data)>2000 && Sum$(data)<3000", "entrylist");
-  //TEntryList *elist = (TEntryList*)gDirectory->Get("elist");
-
-  //  TEntryList *elist =(TEntryList*)fg->Get("elist");
-
-  ch->SetEntryList(elist);
-  
-  
-   
-  // fout->cd();
-  // elist->Write("elist",TObject::kOverwrite);
-
-  // cout << "creating spectrum"<< endl;
-  //TH2F *h1=makeSpectrum(ch);  
-  //fout->cd();
-  //h1->Write("hg",TObject::kOverwrite);
-
-
-  //cout << "creating gmap"<< endl;
-  //TH2F *gmap=gainMap(h1);
-  //new TCanvas();
-  //gmap->Draw("colz");
-  //fout->cd();
-  //gmap->Write("gmap",TObject::kOverwrite);
-
-
-  cout << "creating eta & c."<< endl; 
-  //TFile *fout=new TFile("/local_zfs_raid/tomcat_20160528/trees/eta_dists.root", "RECREATE");  THStack *hs=new THStack();
-  // TFile *fg=new TFile("/local_zfs_raid/tomcat_20160528/trees/gmap_blank.root");
-  // TH2F *gmap=(TH2F*)fg->Get("gmap");
-  // interpolation_EtaVEL *inte=fillEta(ch,nen, gmap, hs);
-  // cout << "Writing to file "<< endl;
-  // fout->cd();
-  // inte->setEta((TH2F*)NULL)->Write();
-  // inte->setEta((EtaVEL*)NULL)->Write();
-  // int nh=-1;
-  // if (hs->GetHists())nh=hs->GetHists()->GetEntries();
-  // for (int ih=0; ih<nh; ih++) 
-  //   (hs->GetHists()->At(ih))->Write();
-  // //  fout->Close();
-  // cout << "Finished "<< endl;
-}
-
-TH2F *fillFF(TChain *ch, interpolation_EtaVEL *eVel, Long64_t nentries=-1, TH2F *gmap=NULL, TH2F *hff=NULL) { 
-
-
-  cout << "****************** Filling flat field " << nentries << endl;
-  Double_t dum[9],   data[9], gain=1;
-  Int_t px, py;
-  Int_t x, y, f, ix, iy;
-  int skip=0;
-  Long64_t treeEntry, chainEntry;
-  Int_t treenum;
-  if (hff==NULL)
-    hff=new TH2F("hff","Flat field",25,-12.5,12.5,25,-12.5,12.5);
-  TAxis *ax=hff->GetXaxis();
-  TAxis *ay=hff->GetYaxis();
-
-
-  TEntryList  *myelist=ch->GetEntryList();
-  Long64_t listEntries = myelist->GetN();
-
-  cout << "List has " << listEntries*1E-6 << "M entries " << endl;
-
-  ch->SetBranchAddress("iFrame",&f);
-  ch->SetBranchAddress("x",&x);
-  ch->SetBranchAddress("y",&y);
-  ch->SetBranchAddress("data",dum);
-
-  if (nentries<=0) nentries=listEntries;
-
-  cout << "Nentries is " << nentries*1E-6 << "M entries " << endl;
-
-  for (Long64_t el = 0; el < nentries; el++) {
-    // if (el%1000==0) cout << (el*100.)/nentries<< "% " << nentries<< endl;
-    skip=0;
-    treeEntry = myelist->GetEntryAndTree(el,treenum);
-    chainEntry = treeEntry+ch->GetTreeOffset()[treenum];
-    
-    ch->GetEntry(chainEntry);
-      for (ix=0; ix<3; ix++) {
-	if (skip==0) {
-	  for (iy=0; iy<3; iy++) {
-	    if (gmap==NULL) {
-	      data[ix+iy*3]=dum[ix+iy*3];
-	    } else {
-	      gain=gmap->GetBinContent(x+ix, y+iy);
-	      if (gain>2000 && gain<3000) {
-		data[ix+iy*3]=dum[ix+iy*3]/gain;
-		//	cout << dum[ix+iy*3] << " " << gain << " " << data[ix+iy*3] << endl;
-	      } else
-		skip=1;
-	    }
-	  }
-	}
-      }
-  
-      if (skip==0) {
-	eVel->getInterpolatedBin(data, px, py);
-	if (px>=0 && py>=0) hff->Fill(ax->GetBinCenter(px+1),ay->GetBinCenter(py+1));
-      }
-  }
-  return hff;
-}
-
-
-
-
-void pos_dependent_etaX_etaY_normalization() {
-
-  //  int ok;
-  TFile *feta=new TFile("/local_zfs_raid/tomcat_20160528/trees/eta_dists.root");
-  TH2F* heta=(TH2F*)feta->Get("heta");
-
-  
-  Double_t bsize=1./25.;
-
-
-
-  cout << "Counts per bin required are "<< heta->Integral()/625. << endl;
-  cout << "Counts per projection required are "<< heta->Integral()/25. << endl;
-  
-  Double_t meanC=heta->Integral()/625.;
-
-
-  Double_t bx[26], by[26];
-
-  TH2I *hhx=new TH2I("hhx","hhx",heta->GetNbinsX(),-0.05, 1.05, heta->GetNbinsY(),-0.05, 1.05); 
-  TH2I *hhy=new TH2I("hhy","hhy",heta->GetNbinsX(),-0.05, 1.05, heta->GetNbinsY(),-0.05, 1.05); 
-
-  TH2D *hff=new TH2D("hff","hff",25,0, 25, 25,0, 25); 
-  
-  Double_t cc[50];
-  for (int i=0; i<50; i++) cc[i]=i+0.5;
-  hhx->SetContour(50,cc);
-  hhy->SetContour(50,cc);
-  
-
-  
-  TH1D *hx;
-  TH1D *hy;
-
-  TH1D *hix;
-  TH1D *hiy;
-  int ii=0;
-  cout << "X"<<endl;
-  int nb=1;
-  //  for (int ib=heta->GetYaxis()->FindBin(0.02); ib<heta->GetYaxis()->FindBin(1.02); ib++) {
-     for (int ib=0; ib<heta->GetNbinsY(); ib++) {
-       // if (ib<heta->GetYaxis()->FindBin(0.02) || ib>heta->GetYaxis()->FindBin(1.02))
-      // else
-      //nb=0;
-    hx=heta->ProjectionX("px",ib+1,ib+1);
-    // while (hx->Integral()<meanC) {
-    //   // cout << ib << " " << nb << " " << hx->Integral() << endl;
-    //   nb++;
-    //   hx=heta->ProjectionX("px",ib+1,ib+1+nb);
-    //   if ((ib+nb)>heta->GetNbinsY()) break;
-    // }
-    hix=(TH1D*)hx->Clone("hix");
-    for (int ibx=0; ibx<hix->GetNbinsX(); ibx++)
-      hix->SetBinContent(ibx+1,hix->GetBinContent(ibx)+hix->GetBinContent(ibx+1));
-    hix->Scale(1./hx->Integral());
-    ii=1;
-    for (int ibx=0; ibx<hix->GetNbinsX(); ibx++) {
-      //  for (int ibb=0; ibb<=nb; ibb++)
-	hhx->SetBinContent(ibx+1, ib+1,ii-1);
-      if (hix->GetBinContent(ibx+1)>=((double)ii)*bsize) {
-	ii++;
-      }
-    }
-    delete hx;
-    delete hix;
-    
-    //  ib=ib+nb;
-  
-  }
-  
-  cout << "Y"<<endl;
-  // for (int ib=heta->GetXaxis()->FindBin(0.02); ib<heta->GetXaxis()->FindBin(1.02); ib++) {
-  for (int ib=0; ib<heta->GetNbinsX(); ib++) {
-    // if (ib<heta->GetXaxis()->FindBin(0.02) || ib>heta->GetXaxis()->FindBin(1.02))
-      // else
-      // nb=0;
-      
-    hx=heta->ProjectionY("py",ib+1,ib+1);
-    // while (hx->Integral()<meanC) {
-    //   nb++;
-    //   hx=heta->ProjectionY("px",ib+1,ib+1+nb);
-    //   if ((ib+nb)>heta->GetNbinsX()) break;
-    // }
-    hix=(TH1D*)hx->Clone("hix");
-    for (int ibx=0; ibx<hix->GetNbinsX(); ibx++)
-      hix->SetBinContent(ibx+1,hix->GetBinContent(ibx)+hix->GetBinContent(ibx+1));
-    hix->Scale(1./hx->Integral());
-    ii=1;
-    for (int ibx=0; ibx<hix->GetNbinsX(); ibx++) {
-      //  for (int ibb=0; ibb<=nb; ibb++)
-	hhy->SetBinContent( ib+1, ibx+1,ii-1);
-      if (hix->GetBinContent(ibx+1)>=((double)ii)*bsize) {
-	ii++;
-      }
-    }
-    delete hx;
-    delete hix;
-    
-    // ib=ib+nb;
-  }
-
-  new TCanvas();
-  heta->Draw("colz");
-  hhy->Draw("cont2 same");
-  hhx->Draw("cont2 same");
-
-  Double_t chi_sq=0;
-  Double_t v;
-  cout << "FF"<<endl;
-       //  for (int ibx=heta->GetXaxis()->FindBin(0.02); ibx<heta->GetXaxis()->FindBin(1.02); ibx++) {
-        for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) { 
-       for (int iby=0; iby<heta->GetNbinsY(); iby++) { 
-       // for (int iby=heta->GetYaxis()->FindBin(0.02); iby<heta->GetYaxis()->FindBin(1.02); iby++) {
-      hff->Fill(hhx->GetBinContent(ibx+1,iby+1)+0.5,hhy->GetBinContent(ibx+1,iby+1)+0.5,heta->GetBinContent(ibx+1,iby+1)); 
-    }
-  }
-   for (int ibx=0; ibx<hff->GetNbinsX(); ibx++) { 
-    for (int iby=0; iby<hff->GetNbinsY(); iby++) {
-      v=hff->GetBinContent(ibx+1,iby+1);
-      if (v>0)
-	chi_sq+=(v-meanC)*(v-meanC)/v;
-      else
-	chi_sq+=(v-meanC)*(v-meanC);
-    }
-  }
-   cout <<"*******chi square is " << chi_sq/625. << endl;
-
-
-  new TCanvas();
-  hff->Draw("colz");
-  hff->Scale(1./meanC);
-
-  
-  TH2F *he2=new TH2F("he2","he2",heta->GetNbinsX(),-0.05, 1.05, heta->GetNbinsY(),-0.05, 1.05); 
-  
-  int ix, iy;
-
-       // for (int ibx=heta->GetXaxis()->FindBin(0.02); ibx<heta->GetXaxis()->FindBin(1.02); ibx++) {
-       // for (int iby=heta->GetYaxis()->FindBin(0.02); iby<heta->GetYaxis()->FindBin(1.02); iby++) {
-       for (int ibx=0; ibx<he2->GetNbinsX(); ibx++) { 
-       for (int iby=0; iby<he2->GetNbinsY(); iby++) { 
-      ix=hhx->GetBinContent(ibx+1,iby+1);
-      iy=hhy->GetBinContent(ibx+1,iby+1);
-      he2->SetBinContent(ibx+1,iby+1,hff->GetBinContent(ix+1,iy+1));
-    }
-  }
-
-  new TCanvas();
-  he2->Draw("colz");
-
-}
-
-
-void global_etaX_etaY_normalization() {
-
-  //  int ok;
-  TFile *feta=new TFile("/local_zfs_raid/tomcat_20160528/trees/eta_dists.root");
-  TH2F* heta=(TH2F*)feta->Get("heta");
-
-  
-  Double_t bsize=1./25.;
-
-
-
-  cout << "Counts per bin required are "<< heta->Integral()/625. << endl;
-  cout << "Counts per projection required are "<< heta->Integral()/25. << endl;
-  
-  Double_t meanC=heta->Integral()/625.;
-
-
-  Double_t bx[26], by[26];
-
-  TH2I *hhx=new TH2I("hhx","hhx",heta->GetNbinsX(),-0.05, 1.05, heta->GetNbinsY(),-0.05, 1.05); 
-  TH2I *hhy=new TH2I("hhy","hhy",heta->GetNbinsX(),-0.05, 1.05, heta->GetNbinsY(),-0.05, 1.05); 
-
-  TH2D *hff=new TH2D("hff","hff",25,0, 25, 25,0, 25); 
-  
-  Double_t cc[50];
-  for (int i=0; i<50; i++) cc[i]=i+0.5;
-  hhx->SetContour(50,cc);
-  hhy->SetContour(50,cc);
-  
-
-  
-  TH1D *hx;
-  TH1D *hy;
-
-  TH1D *hix;
-  TH1D *hiy;
-  int ii=0;
-  cout << "X"<<endl;
-  int nb=1;
-
-  hx=heta->ProjectionX();
-    hix=(TH1D*)hx->Clone("hix");
-    for (int ibx=0; ibx<hix->GetNbinsX(); ibx++)
-      hix->SetBinContent(ibx+1,hix->GetBinContent(ibx)+hix->GetBinContent(ibx+1));
-    hix->Scale(1./hx->Integral());
-  //  for (int ib=heta->GetYaxis()->FindBin(0.02); ib<heta->GetYaxis()->FindBin(1.02); ib++) {
-     for (int ib=0; ib<heta->GetNbinsY(); ib++) {
-       // if (ib<heta->GetYaxis()->FindBin(0.02) || ib>heta->GetYaxis()->FindBin(1.02))
-      // else
-      //nb=0;
-       //  hx=heta->ProjectionX("px",ib+1-0.5*nb,ib+1+0.5*nb);
-    // while (hx->Integral()<meanC) {
-    //   // cout << ib << " " << nb << " " << hx->Integral() << endl;
-    //   nb++;
-    //   hx=heta->ProjectionX("px",ib+1,ib+1+nb);
-    //   if ((ib+nb)>heta->GetNbinsY()) break;
-    // }
-    ii=1;
-    for (int ibx=0; ibx<hix->GetNbinsX(); ibx++) {
-      //  for (int ibb=0; ibb<=nb; ibb++)
-	hhx->SetBinContent(ibx+1, ib+1,ii-1);
-      if (hix->GetBinContent(ibx+1)>=((double)ii)*bsize) {
-	ii++;
-      }
-    }
-    
-    //  ib=ib+nb;
-  
-  }
-
-
-    delete hx;
-    delete hix;
-
-  hx=heta->ProjectionY();
-
-  hix=(TH1D*)hx->Clone("hix");
-  for (int ibx=0; ibx<hix->GetNbinsX(); ibx++)
-    hix->SetBinContent(ibx+1,hix->GetBinContent(ibx)+hix->GetBinContent(ibx+1));
-  hix->Scale(1./hx->Integral());
-
-
-
-  cout << "Y"<<endl;
-  // for (int ib=heta->GetXaxis()->FindBin(0.02); ib<heta->GetXaxis()->FindBin(1.02); ib++) {
-  for (int ib=0; ib<heta->GetNbinsX(); ib++) {
-    // if (ib<heta->GetXaxis()->FindBin(0.02) || ib>heta->GetXaxis()->FindBin(1.02))
-      // else
-      // nb=0;
-      
-    ii=1;
-    for (int ibx=0; ibx<hix->GetNbinsX(); ibx++) {
-      //  for (int ibb=0; ibb<=nb; ibb++)
-      hhy->SetBinContent( ib+1, ibx+1,ii-1);
-      if (hix->GetBinContent(ibx+1)>=((double)ii)*bsize) {
-	ii++;
-      }
-    }
-    
-    // ib=ib+nb;
-  }
-
-    delete hx;
-    delete hix;
-
-  new TCanvas();
-  heta->Draw("colz");
-  hhy->Draw("cont2 same");
-  hhx->Draw("cont2 same");
-
-  Double_t chi_sq=0;
-  Double_t v;
-  cout << "FF"<<endl;
-       //  for (int ibx=heta->GetXaxis()->FindBin(0.02); ibx<heta->GetXaxis()->FindBin(1.02); ibx++) {
-        for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) { 
-       for (int iby=0; iby<heta->GetNbinsY(); iby++) { 
-       // for (int iby=heta->GetYaxis()->FindBin(0.02); iby<heta->GetYaxis()->FindBin(1.02); iby++) {
-      hff->Fill(hhx->GetBinContent(ibx+1,iby+1)+0.5,hhy->GetBinContent(ibx+1,iby+1)+0.5,heta->GetBinContent(ibx+1,iby+1)); 
-    }
-  }
-   for (int ibx=0; ibx<hff->GetNbinsX(); ibx++) { 
-    for (int iby=0; iby<hff->GetNbinsY(); iby++) {
-      v=hff->GetBinContent(ibx+1,iby+1);
-      if (v>0)
-	chi_sq+=(v-meanC)*(v-meanC)/v;
-      else
-	chi_sq+=(v-meanC)*(v-meanC);
-    }
-  }
-   cout <<"*******chi square is " << chi_sq/625. << endl;
-
-
-  new TCanvas();
-  hff->Draw("colz");
-  hff->Scale(1./meanC);
-
-  
-  TH2F *he2=new TH2F("he2","he2",heta->GetNbinsX(),-0.05, 1.05, heta->GetNbinsY(),-0.05, 1.05); 
-  
-  int ix, iy;
-
-       // for (int ibx=heta->GetXaxis()->FindBin(0.02); ibx<heta->GetXaxis()->FindBin(1.02); ibx++) {
-       // for (int iby=heta->GetYaxis()->FindBin(0.02); iby<heta->GetYaxis()->FindBin(1.02); iby++) {
-       for (int ibx=0; ibx<he2->GetNbinsX(); ibx++) { 
-       for (int iby=0; iby<he2->GetNbinsY(); iby++) { 
-      ix=hhx->GetBinContent(ibx+1,iby+1);
-      iy=hhy->GetBinContent(ibx+1,iby+1);
-      he2->SetBinContent(ibx+1,iby+1,hff->GetBinContent(ix+1,iy+1));
-    }
-  }
-
-  new TCanvas();
-  he2->Draw("colz");
-
-}
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-void hh() {
-  rootlogon();
-
-
-  TFile *fL=new TFile("/local_zfs_raid/tomcat_20160528/trees/elist.root");
-  TEntryList *elist =(TEntryList*)fL->Get("nodoubles");
-
-  TFile *fg=new TFile("/local_zfs_raid/tomcat_20160528/trees/gmap_eta_blank.root");
-  TH2F *gmap=(TH2F*)fg->Get("gmap");
-  
-  TChain *ch=new TChain("blank");
-
-  ch->Add("/local_zfs_raid/tomcat_20160528/trees/blank_*.root");
-
-
-
-  ch->SetEntryList(elist);
-
-
-
-
-  int ok;
-  TFile *feta=new TFile("/local_zfs_raid/tomcat_20160528/trees/eta_dists.root");
-  // EtaVEL* *eVel=(TH2F*)feta->Get("EtaVEL");
-  TH2F* heta=(TH2F*)feta->Get("heta");
-  heta->SetName("hheta");
-  interpolation_EtaVEL *eVel=new interpolation_EtaVEL(400, 200, 25, -0.05,1.05);
-  int it=0;
-  char tit[10000];
-  eVel->setEta(heta); 
-  TH2F *hff=new TH2F("hff","Flat field",25,-12.5,12.5,25,-12.5,12.5);
-  hff->SetTitle("; #pi_{x} (#mum); #pi_{y} (#mum); Counts (A.U.)");
-  hff->SetStats(kFALSE);
-  hff->SetMinimum(0);
-  // hff->SetMaximum(20E3);
-  hff->GetZaxis()->SetTitleOffset(1.3);
-  hff->GetZaxis()->SetLabelSize(0.02);
-
-  // TH2F *hgrid=new TH2F("hgrid","",25,-12.5,12.5,25,-12.5,12.5);
-  // hgrid->SetTitle("; #pi_{x} (#mum); #pi_{y} (#mum); Counts (A.U.)");
-  // hgrid->GetXaxis()->SetNdivisions(25);
-  // hgrid->GetYaxis()->SetNdivisions(25);
-  // hgrid->GetYaxis()->SetLabelOffset(999.);
-  // hgrid->GetXaxis()->SetLabelOffset(999.); 
-  TGraph *g_chi=new TGraph();
-  g_chi->SetMarkerStyle(20);
-  TCanvas *c1=new TCanvas("c1","c1",1000,500);
-  TCanvas *c2=new TCanvas("c2","c2",500,500);
-  c2->SetLogy(kTRUE); 
-  c1->Divide(2,1);
-  
-  c1->cd(1);
-  TPad* pad = (TPad*)c1->GetPad(1);
-  //pad->SetLeftMargin(0.15);
-  // pad->SetBottomMargin(0.15);
-  // pad->SetTopMargin(0.2);
-  // pad->SetRightMargin(0.2);
-  // pad->SetFillColor(0);
-   pad->SetBorderMode(0);
-  pad->SetLogz(kTRUE); 
-  
-  c1->cd(2);
-  pad = (TPad*)c1->GetPad(2);
-  pad->SetLeftMargin(0.1);
-  // pad->SetBottomMargin(0.15);
-  // pad->SetTopMargin(0.2);
- pad->SetRightMargin(0.15);
-  // pad->SetFillColor(0);
- pad->SetBorderMode(0); 
- // pad->SetLogz(kTRUE);
-  pad->SetGridx(kTRUE);
-  pad->SetGridy(kTRUE);
-  
-
-
-
-  heta->SetStats(kFALSE);
-  //  c1->cd(2);
-  // hff->Fill(0.,0.);
-  // hff->Draw("colz");
-  // TPaletteAxis *palette1 =(TPaletteAxis*)hff->GetListOfFunctions()->FindObject("palette");
-  // palette1->SetLabelSize(0.02);
-
-
-  while (ok==0 && it<10000) {
-     sprintf(tit,"Iteration %d; #eta_{x}; #eta_{y}; Counts (A.U.)",it);
-    hff->Reset();
-     fillFF(ch, eVel, 100000, gmap, hff);
-
-    heta->SetTitle(tit);
-     c1->cd(1);
-     eVel->DrawH();
-
-     c1->cd(2);
-     //  hgrid->Draw();
-     hff->Draw("colz");
-
-     c1->cd();
-     c1->Modified();
-     c1->Update();
-     c1->SaveAs("test1.gif+");
-
-
-    eVel->prepareInterpolation(ok,1);
-    cout << "**************************** Iteration number " << it << endl;
-    if (eVel->getChiSq()<1E10)
-      g_chi->SetPoint(it,it,eVel->getChiSq());
-    else
-      g_chi->SetPoint(it,it,1E10);
-    it++;
-    if (g_chi->GetN()>0) {
-      c2->cd();
-      g_chi->Draw("ALP");
-      c2->Modified();
-      c2->Update();
-    }
-  }
-
-    sprintf(tit,"Iteration %d",it);
-    hff->Reset();
-    fillFF(ch, eVel, 100000, gmap, hff);
-
-    heta->SetTitle(tit);
-
-    c1->cd(1);
-    eVel->DrawH();
-
-    c1->cd(2);
-    // hgrid->Draw();
-    hff->Draw("colz");
-
-    c1->Modified();
-    c1->Update();
-    c1->SaveAs("test1.gif+");
-
-
-}
- 
-TH2D *interpGrating1D() {
-
-
-
-  TFile *fg=new TFile("/local_zfs_raid/tomcat_20160528/trees/gmap_eta_blank.root");
-  TH2F *gmap=NULL;//(TH2F*)fg->Get("gmap");
-  TH2F *heta=(TH2F*)fg->Get("heta");
-  
-  TChain *ch=new TChain("grating_1d");
-  ch->Add("/local_zfs_raid/tomcat_20160528/trees/grating_1d_t*_v4.root");
-
-  // TFile *ft=new TFile("/local_zfs_raid/tomcat_20160528/trees/grating_1d_t0_v4.root");
-  // TTree *ch=(TTree*)ft->Get("grating_1d");
-
-  // ch->Draw("y:x>>hh(400,0,400,400,0,400)","","colz");
-  // gPad->Modified();
-  // gPad->Update();
-  
-  
-
-
-  TH2F *hietaX=(TH2F*)heta->Clone("hietaX");
-  TH2F *hietaY=(TH2F*)heta->Clone("hietaY");
-  hietaX->SetTitle("hietaX");
-  hietaY->SetTitle("hietaY");
-
-
-  TH1D *hetaY=heta->ProjectionX();
-  TH1D *hetaX=heta->ProjectionY();
-
-  TH1D *h1etaX=(TH1D*)hetaX->Clone("h1etaX");
-  TH1D *h1etaY=(TH1D*)hetaY->Clone("h1etaY");
-  h1etaX->SetTitle("h1etaX");
-  h1etaY->SetTitle("h1etaY");
-  
-  for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-    for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-      if (iby==0)
-	hietaY->SetBinContent(ibx+1, iby+1,heta->GetBinContent(ibx+1, iby+1)/hetaX->GetBinContent(ibx+1));
-      else
-	hietaY->SetBinContent(ibx+1, iby+1,hietaY->GetBinContent(ibx+1, iby)+heta->GetBinContent(ibx+1, iby+1)/hetaX->GetBinContent(ibx+1));
-	
-      if (ibx==0)
-	hietaX->SetBinContent(ibx+1, iby+1,heta->GetBinContent(ibx+1, iby+1)/hetaY->GetBinContent(iby+1));
-      else
-	hietaX->SetBinContent(ibx+1, iby+1,hietaX->GetBinContent(ibx, iby+1)+heta->GetBinContent(ibx+1, iby+1)/hetaY->GetBinContent(iby+1));
-	
-      if (ibx==0) {
-      if (iby==0)
-	h1etaY->SetBinContent(iby+1,hetaY->GetBinContent(iby+1)/hetaY->Integral());
-      else
-	h1etaY->SetBinContent(iby+1,h1etaY->GetBinContent(iby)+hetaY->GetBinContent(iby+1)/hetaY->Integral());
-
-	}
-    }
-    if (ibx==0)
-      h1etaX->SetBinContent(ibx+1,hetaX->GetBinContent(ibx+1)/hetaX->Integral());
-    else
-      h1etaX->SetBinContent(ibx+1,h1etaX->GetBinContent(ibx)+hetaX->GetBinContent(ibx+1)/hetaX->Integral());
-      
-  }
- 
-
-   TFile *fout=new TFile("/local_zfs_raid/tomcat_20160528/trees/img_grating_1d_eta.root", "RECREATE");
-  
-
-
-  new TCanvas();
-  hietaY->Draw("colz");
-  gPad->Modified();
-  gPad->Update();
-  
-  new TCanvas();
-  hietaX->Draw("colz");
-  gPad->Modified();
-  gPad->Update();
-  new TCanvas();
-  h1etaX->Draw();
-  gPad->Modified();
-  gPad->Update();
-  new TCanvas();
-  h1etaY->Draw();
-  gPad->Modified();
-  gPad->Update();
-  
-  Double_t data[9], gain=1;
-  Double_t dum[9], sDum[2][2], etax, etay, sum, totquad;
-  Int_t x,y,f;
-  int ix, iy, skip;
-
-  Long64_t nentries=ch->GetEntries();
-  ch->SetBranchAddress("iFrame",&f);
-  ch->SetBranchAddress("x",&x);
-  ch->SetBranchAddress("y",&y);
-  ch->SetBranchAddress("data",dum);
-  Long64_t ie;
-
-  TH2D *imgLR=new TH2D("imgLR","imgLR",400,0,400,200,100,300);
-  TH2D *imgHR=new TH2D("imgHR","imgHR",400*25,0,400,200*25,100,300);
-  TH2D *imgHR1=new TH2D("imgHR1","imgHR1",400*25,0,400,200*25,100,300);
-  
-
-  TCanvas *c1=new TCanvas();
-  imgLR->Draw("colz");
-   TCanvas *c2=new TCanvas();
-   imgHR->Draw("colz");
-   TCanvas *c3=new TCanvas();
-   imgHR1->Draw("colz");
-
-  cout << "Chain has " << nentries*1E-6 << "M entries " << endl;
-  Double_t etamax=hietaX->GetXaxis()->GetBinCenter(hietaX->GetNbinsX());
-  Double_t etamin=hietaX->GetXaxis()->GetBinCenter(0);
-
-  for (ie=0; ie<nentries; ie++) {
-    skip=1;
-    if (ch->GetEntry(ie)) {  
-    skip=0;
-      for (ix=0; ix<3; ix++) {
-      	if (skip==0) {
-      	  for (iy=0; iy<3; iy++) {
-      	    if (gmap==NULL) {
-      	      data[ix+iy*3]=dum[ix+iy*3];
-      	    } else {
-      	      gain=gmap->GetBinContent(gmap->GetXaxis()->FindBin(x), gmap->GetYaxis()->FindBin(y));
-      	      if (gain>2000 && gain<3000) {
-      		data[ix+iy*3]=dum[ix+iy*3]/gain;
-      		//	cout << dum[ix+iy*3] << " " << gain << " " << data[ix+iy*3] << endl;
-      	      } else
-      		skip=1;
-      	    }
-      	  }
-      	}
-      }
-   
-    }  
-     if (skip==0) {
-      //slsInterpolation::calcEta(dum, etax, etay, sum, totquad, sDum);
-      slsInterpolation::calcEta(data, etax, etay, sum, totquad, sDum);
-       }
-      if (etax<etamin || etay<etamin || etax>etamax || etay>etamax || totquad/sum<0.8 || totquad/sum>1.2) skip=1;
-    
-      if (skip==0) {
-      imgLR->Fill(x,y);
-      imgHR->Fill(x-0.5+hietaX->GetBinContent(hietaX->GetXaxis()->FindBin(etax),hietaX->GetYaxis()->FindBin(etay)),y-0.5+hietaY->GetBinContent(hietaY->GetXaxis()->FindBin(etax),hietaY->GetYaxis()->FindBin(etay)));
-      imgHR1->Fill(x-0.5+h1etaX->GetBinContent(h1etaX->FindBin(etax)), y-0.5+h1etaY->GetBinContent(h1etaY->FindBin(etay)));
-    }
-     if (ie%1000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-     } 
-     if (ie%10000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();export PATH=/afs/psi.ch/project/sls_det_firmware/jungfrau_software/uClinux-2010_64bit/bfin-uclinux/bin:$PATH
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-       cout << " " << ((float)ie)*100./((float)nentries)<< "%" << endl;
-     }
-    
-  }
-  imgLR->Write("imgLR");
-  imgHR->Write("imgHR");
-  imgHR1->Write("imgHR1");
- 
-  c1->cd();
-  imgLR->DrawCopy("colz");
-  c2->cd();
-  imgHR->DrawCopy("colz");
-  c3->cd();
-  imgHR1->DrawCopy("colz");
-  
-  fout->Close();
-
-}
-
-
-
-
-
-
-
-
-
-TH2D *interpBlank() {
-
-
-  const Double_t Delta_eta=0.025;
-
-
-  TFile *fg=new TFile("/local_zfs_raid/tomcat_20160528/trees/gmap_eta_blank.root");
-  TH2F *gmap=NULL;//(TH2F*)fg->Get("gmap");
-  TH2F *heta=(TH2F*)fg->Get("heta");
-  
-  TChain *ch=new TChain("blank");
-  ch->Add("/local_zfs_raid/tomcat_20160528/trees/blank_t*.root");
-
-  // TFile *ft=new TFile("/local_zfs_raid/tomcat_20160528/trees/grating_1d_t0_v4.root");
-  // TTree *ch=(TTree*)ft->Get("grating_1d");
-
-  // ch->Draw("y:x>>hh(400,0,400,400,0,400)","","colz");
-  // gPad->Modified();
-  // gPad->Update();
-  
-
-  
-  
-
-
-  TH2F *hietaX=(TH2F*)heta->Clone("hietaX");
-  TH2F *hietaY=(TH2F*)heta->Clone("hietaY");
-  hietaX->SetTitle("hietaX");
-  hietaY->SetTitle("hietaY");
-
-
-  TH1D *hetaY=heta->ProjectionX();
-  TH1D *hetaX=heta->ProjectionY();
-
-  TH1D *h1etaX=(TH1D*)hetaX->Clone("h1etaX");
-  TH1D *h1etaY=(TH1D*)hetaY->Clone("h1etaY");
-  h1etaX->SetTitle("h1etaX");
-  h1etaY->SetTitle("h1etaY");
-  
-  int binminX=heta->GetXaxis()->FindBin(-Delta_eta);
-  int binmaxX=heta->GetXaxis()->FindBin(1+Delta_eta);
-  int binminY=heta->GetYaxis()->FindBin(-Delta_eta);
-  int binmaxY=heta->GetYaxis()->FindBin(1+Delta_eta);
-  
-
-  for (int ibx=binminX; ibx<binmaxX; ibx++) {
-    for (int iby=binminY; iby<binmaxY; iby++) {
-      if (iby==0)
-	hietaY->SetBinContent(ibx, iby,heta->GetBinContent(ibx, iby)/hetaX->GetBinContent(ibx));
-      else
-	hietaY->SetBinContent(ibx, iby,hietaY->GetBinContent(ibx, iby-1)+heta->GetBinContent(ibx, iby)/hetaX->GetBinContent(ibx));
-	
-      if (ibx==0)
-	hietaX->SetBinContent(ibx, iby,heta->GetBinContent(ibx, iby)/hetaY->GetBinContent(iby));
-      else
-	hietaX->SetBinContent(ibx, iby,hietaX->GetBinContent(ibx-1, iby)+heta->GetBinContent(ibx, iby)/hetaY->GetBinContent(iby));
-	
-      if (ibx==binminX) {
-      if (iby==0)
-	h1etaY->SetBinContent(iby+1,hetaY->GetBinContent(iby)/hetaY->Integral(binminY,binmaxY));
-      else
-	h1etaY->SetBinContent(iby+1,h1etaY->GetBinContent(iby-1)+hetaY->GetBinContent(iby)/hetaY->Integral(binminY,binmaxY));
-      
-      }
-    }
-    if (ibx==0)
-      h1etaX->SetBinContent(ibx+1,hetaX->GetBinContent(ibx+1)/hetaX->Integral(binminX,binmaxX));
-    else
-      h1etaX->SetBinContent(ibx+1,h1etaX->GetBinContent(ibx)+hetaX->GetBinContent(ibx+1)/hetaX->Integral(binminX,binmaxX));
-      
-  }
- 
-
-   TFile *fout=new TFile("/local_zfs_raid/tomcat_20160528/trees/img_blank_eta.root", "RECREATE");
-  
-
-
-  new TCanvas();
-  hietaY->Draw("colz");
-  gPad->Modified();
-  gPad->Update();
-  
-  new TCanvas();
-  hietaX->Draw("colz");
-  gPad->Modified();
-  gPad->Update();
-  new TCanvas();
-  h1etaX->Draw();
-  gPad->Modified();
-  gPad->Update();
-  new TCanvas();
-  h1etaY->Draw();
-  gPad->Modified();
-  gPad->Update();
-  
-  Double_t data[9], gain=1;
-  Double_t dum[9], sDum[2][2], etax, etay, sum, totquad;
-  Int_t x,y,f;
-  int ix, iy, skip;
-
-  Long64_t nentries=ch->GetEntries();
-  ch->SetBranchAddress("iFrame",&f);
-  ch->SetBranchAddress("x",&x);
-  ch->SetBranchAddress("y",&y);
-  ch->SetBranchAddress("data",dum);
-  Long64_t ie;
-
-  TH2D *imgLR=new TH2D("imgLR","imgLR",400,0,400,200,100,300);
-  TH2D *imgHR=new TH2D("imgHR","imgHR",400*25,0,400,200*25,100,300);
-  TH2D *imgHR1=new TH2D("imgHR1","imgHR1",400*25,0,400,200*25,100,300);
-  
-
-  TCanvas *c1=new TCanvas();
-  imgLR->Draw("colz");
-   TCanvas *c2=new TCanvas();
-   imgHR->Draw("colz");
-   TCanvas *c3=new TCanvas();
-   imgHR1->Draw("colz");
-
-  cout << "Chain has " << nentries*1E-6 << "M entries " << endl;
-  Double_t etamax=hietaX->GetXaxis()->GetBinCenter(hietaX->GetNbinsX());
-  Double_t etamin=hietaX->GetXaxis()->GetBinCenter(0);
-
-  for (ie=0; ie<nentries; ie++) {
-    skip=1;
-    if (ch->GetEntry(ie)) {  
-    skip=0;
-      for (ix=0; ix<3; ix++) {
-      	if (skip==0) {
-      	  for (iy=0; iy<3; iy++) {
-      	    if (gmap==NULL) {
-      	      data[ix+iy*3]=dum[ix+iy*3];
-      	    } else {
-      	      gain=gmap->GetBinContent(gmap->GetXaxis()->FindBin(x), gmap->GetYaxis()->FindBin(y));
-      	      if (gain>2000 && gain<3000) {
-      		data[ix+iy*3]=dum[ix+iy*3]/gain;
-      		//	cout << dum[ix+iy*3] << " " << gain << " " << data[ix+iy*3] << endl;
-      	      } else
-      		skip=1;
-      	    }
-      	  }
-      	}
-      }
-   
-    }  
-     if (skip==0) {
-      slsInterpolation::calcEta(data, etax, etay, sum, totquad, sDum);
-       }
-      if (etax<etamin || etay<etamin || etax>etamax || etay>etamax || totquad/sum<0.8 || totquad/sum>1.2) skip=1;
-    
-      if (skip==0) {
-      imgLR->Fill(x,y);
-      imgHR->Fill(x-0.5+hietaX->GetBinContent(hietaX->GetXaxis()->FindBin(etax),hietaX->GetYaxis()->FindBin(etay)),y-0.5+hietaY->GetBinContent(hietaY->GetXaxis()->FindBin(etax),hietaY->GetYaxis()->FindBin(etay)));
-      imgHR1->Fill(x-0.5+h1etaX->GetBinContent(h1etaX->FindBin(etax)), y-0.5+h1etaY->GetBinContent(h1etaY->FindBin(etay)));
-    }
-     if (ie%1000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-     } 
-     if (ie%10000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();export PATH=/afs/psi.ch/project/sls_det_firmware/jungfrau_software/uClinux-2010_64bit/bfin-uclinux/bin:$PATH
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-       cout << " " << ((float)ie)*100./((float)nentries)<< "%" << endl;
-       imgLR->Write("imgLR",TObject::kOverwrite);
-       imgHR->Write("imgHR",TObject::kOverwrite);
-       imgHR1->Write("imgHR1",TObject::kOverwrite);
-     }
-    
-  }
-  imgLR->Write("imgLR",TObject::kOverwrite);
-  imgHR->Write("imgHR",TObject::kOverwrite);
-  imgHR1->Write("imgHR1",TObject::kOverwrite);
- 
-  // c1->cd();
-  // imgLR->DrawCopy("colz");
-  // c2->cd();
-  // imgHR->DrawCopy("colz");
-  // c3->cd();
-  // imgHR1->DrawCopy("colz");
-  
-  fout->Close();
-
-}
-
-
-
-
-
-
-
-TH2D *interpSampleGrating() {
-
-
-
-  TFile *fg=new TFile("/local_zfs_raid/tomcat_20160528/trees/gmap_eta_blank.root");
-  TH2F *gmap=NULL;//(TH2F*)fg->Get("gmap");
-  TH2F *heta=(TH2F*)fg->Get("heta");
-  
-  TChain *ch=new TChain("sample_grating_1d");
-  ch->Add("/local_zfs_raid/tomcat_20160528/trees/sample_grating_1d_t*.root");
-
-  // TFile *ft=new TFile("/local_zfs_raid/tomcat_20160528/trees/grating_1d_t0_v4.root");
-  // TTree *ch=(TTree*)ft->Get("grating_1d");
-
-  // ch->Draw("y:x>>hh(400,0,400,400,0,400)","","colz");
-  // gPad->Modified();
-  // gPad->Update();
-  
-  
-
-
-  TH2F *hietaX=(TH2F*)heta->Clone("hietaX");
-  TH2F *hietaY=(TH2F*)heta->Clone("hietaY");
-  hietaX->SetTitle("hietaX");
-  hietaY->SetTitle("hietaY");
-
-
-  TH1D *hetaY=heta->ProjectionX();
-  TH1D *hetaX=heta->ProjectionY();
-
-  TH1D *h1etaX=(TH1D*)hetaX->Clone("h1etaX");
-  TH1D *h1etaY=(TH1D*)hetaY->Clone("h1etaY");
-  h1etaX->SetTitle("h1etaX");
-  h1etaY->SetTitle("h1etaY");
-  
-  for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-    for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-      if (iby==0)
-	hietaY->SetBinContent(ibx+1, iby+1,heta->GetBinContent(ibx+1, iby+1)/hetaX->GetBinContent(ibx+1));
-      else
-	hietaY->SetBinContent(ibx+1, iby+1,hietaY->GetBinContent(ibx+1, iby)+heta->GetBinContent(ibx+1, iby+1)/hetaX->GetBinContent(ibx+1));
-	
-      if (ibx==0)
-	hietaX->SetBinContent(ibx+1, iby+1,heta->GetBinContent(ibx+1, iby+1)/hetaY->GetBinContent(iby+1));
-      else
-	hietaX->SetBinContent(ibx+1, iby+1,hietaX->GetBinContent(ibx, iby+1)+heta->GetBinContent(ibx+1, iby+1)/hetaY->GetBinContent(iby+1));
-	
-      if (ibx==0) {
-      if (iby==0)
-	h1etaY->SetBinContent(iby+1,hetaY->GetBinContent(iby+1)/hetaY->Integral());
-      else
-	h1etaY->SetBinContent(iby+1,h1etaY->GetBinContent(iby)+hetaY->GetBinContent(iby+1)/hetaY->Integral());
-
-	}
-    }
-    if (ibx==0)
-      h1etaX->SetBinContent(ibx+1,hetaX->GetBinContent(ibx+1)/hetaX->Integral());
-    else
-      h1etaX->SetBinContent(ibx+1,h1etaX->GetBinContent(ibx)+hetaX->GetBinContent(ibx+1)/hetaX->Integral());
-      
-  }
- 
-
-   TFile *fout=new TFile("/local_zfs_raid/tomcat_20160528/trees/img_sample_grating_1d_eta.root", "RECREATE");
-  
-
-
-  new TCanvas();
-  hietaY->Draw("colz");
-  gPad->Modified();
-  gPad->Update();
-  
-  new TCanvas();
-  hietaX->Draw("colz");
-  gPad->Modified();
-  gPad->Update();
-  new TCanvas();
-  h1etaX->Draw();
-  gPad->Modified();
-  gPad->Update();
-  new TCanvas();
-  h1etaY->Draw();
-  gPad->Modified();
-  gPad->Update();
-  
-  Double_t data[9], gain=1;
-  Double_t dum[9], sDum[2][2], etax, etay, sum, totquad;
-  Int_t x,y,f;
-  int ix, iy, skip;
-
-  Long64_t nentries=ch->GetEntries();
-  ch->SetBranchAddress("iFrame",&f);
-  ch->SetBranchAddress("x",&x);
-  ch->SetBranchAddress("y",&y);
-  ch->SetBranchAddress("data",dum);
-  Long64_t ie;
-
-  TH2D *imgLR=new TH2D("imgLR","imgLR",400,0,400,200,100,300);
-  TH2D *imgHR=new TH2D("imgHR","imgHR",400*25,0,400,200*25,100,300);
-  TH2D *imgHR1=new TH2D("imgHR1","imgHR1",400*25,0,400,200*25,100,300);
-  
-
-  TCanvas *c1=new TCanvas();
-  imgLR->Draw("colz");
-   TCanvas *c2=new TCanvas();
-   imgHR->Draw("colz");
-   TCanvas *c3=new TCanvas();
-   imgHR1->Draw("colz");
-
-  cout << "Chain has " << nentries*1E-6 << "M entries " << endl;
-  Double_t etamax=hietaX->GetXaxis()->GetBinCenter(hietaX->GetNbinsX());
-  Double_t etamin=hietaX->GetXaxis()->GetBinCenter(0);
-
-  for (ie=0; ie<nentries; ie++) {
-    skip=1;
-    if (ch->GetEntry(ie)) {  
-    skip=0;
-      for (ix=0; ix<3; ix++) {
-      	if (skip==0) {
-      	  for (iy=0; iy<3; iy++) {
-      	    if (gmap==NULL) {
-      	      data[ix+iy*3]=dum[ix+iy*3];
-      	    } else {
-      	      gain=gmap->GetBinContent(gmap->GetXaxis()->FindBin(x), gmap->GetYaxis()->FindBin(y));
-      	      if (gain>2000 && gain<3000) {
-      		data[ix+iy*3]=dum[ix+iy*3]/gain;
-      		//	cout << dum[ix+iy*3] << " " << gain << " " << data[ix+iy*3] << endl;
-      	      } else
-      		skip=1;
-      	    }
-      	  }
-      	}
-      }
-   
-    }  
-     if (skip==0) {
-      slsInterpolation::calcEta(data, etax, etay, sum, totquad, sDum);
-       }
-      if (etax<etamin || etay<etamin || etax>etamax || etay>etamax || totquad/sum<0.8 || totquad/sum>1.2) skip=1;
-    
-      if (skip==0) {
-      imgLR->Fill(x,y);
-      imgHR->Fill(x-0.5+hietaX->GetBinContent(hietaX->GetXaxis()->FindBin(etax),hietaX->GetYaxis()->FindBin(etay)),y-0.5+hietaY->GetBinContent(hietaY->GetXaxis()->FindBin(etax),hietaY->GetYaxis()->FindBin(etay)));
-      imgHR1->Fill(x-0.5+h1etaX->GetBinContent(h1etaX->FindBin(etax)), y-0.5+h1etaY->GetBinContent(h1etaY->FindBin(etay)));
-    }
-     if (ie%1000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-     } 
-     if (ie%10000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();export PATH=/afs/psi.ch/project/sls_det_firmware/jungfrau_software/uClinux-2010_64bit/bfin-uclinux/bin:$PATH
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-       cout << " " << ((float)ie)*100./((float)nentries)<< "%" << endl;
-       imgLR->Write("imgLR",TObject::kOverwrite);
-       imgHR->Write("imgHR",TObject::kOverwrite);
-       imgHR1->Write("imgHR1",TObject::kOverwrite);
-     }
-    
-  }
-  imgLR->Write("imgLR",TObject::kOverwrite);
-  imgHR->Write("imgHR",TObject::kOverwrite);
-  imgHR1->Write("imgHR1",TObject::kOverwrite);
- 
-  // c1->cd();
-  // imgLR->DrawCopy("colz");
-  // c2->cd();
-  // imgHR->DrawCopy("colz");
-  // c3->cd();
-  // imgHR1->DrawCopy("colz");
-  
-  fout->Close();
-
-}
-
-TH2D *interp(char *name, int ip, int nb=25) {
-
-  char chainName[1000];
-  sprintf(chainName,"/local_zfs_raid/tomcat_20160528/trees/%s_t*.root",name);
-
-  const Double_t Delta_eta=0.05;
-
-
-  char gName[1000];
-  //sprintf(gName,"/local_zfs_raid/tomcat_20160528/trees/gmap_eta_blank_%d.root",ip);
-  sprintf(gName,"/local_zfs_raid/tomcat_20160528/trees/gmap_eta_gcorr_%d.root",ip);
-  TFile *fg=new TFile(gName);
-  TH2F *gmap=(TH2F*)fg->Get("gmap");
-  TH2F *heta=(TH2F*)fg->Get("heta");
-  
-  TChain *ch=new TChain(name);
-  ch->Add(chainName);
-
-  // TFile *ft=new TFile("/local_zfs_raid/tomcat_20160528/trees/grating_1d_t0_v4.root");
-  // TTree *ch=(TTree*)ft->Get("grating_1d");
-
-  // ch->Draw("y:x>>hh(400,0,400,400,0,400)","","colz");
-  // gPad->Modified();
-  // gPad->Update();
-  
-
-  
-  
-
-
-  TH2F *hietaX=(TH2F*)heta->Clone("hietaX");
-  TH2F *hietaY=(TH2F*)heta->Clone("hietaY");
-  hietaX->SetTitle("hietaX");
-  hietaY->SetTitle("hietaY");
-  hietaX->Reset();
-  hietaY->Reset();
-  
-
-
-  TH1D *hetaY=heta->ProjectionX();
-  TH1D *hetaX=heta->ProjectionY();
-
-  TH1D *h1etaX=(TH1D*)hetaX->Clone("h1etaX");
-  TH1D *h1etaY=(TH1D*)hetaY->Clone("h1etaY");
-  h1etaX->SetTitle("h1etaX");
-  h1etaY->SetTitle("h1etaY");
-  h1etaX->Reset();
-  h1etaY->Reset();
-  
-  int binminX=heta->GetXaxis()->FindBin(-Delta_eta);
-  int binmaxX=heta->GetXaxis()->FindBin(1+Delta_eta);
-  int binminY=heta->GetYaxis()->FindBin(-Delta_eta);
-  int binmaxY=heta->GetYaxis()->FindBin(1+Delta_eta);
-  
-  
-  TH1D *hetaYp=heta->ProjectionX("py",binminY,binmaxY);
-  TH1D *hetaXp=heta->ProjectionY("px",binminX,binmaxX);
-
-  for (int ibx=binminX; ibx<binmaxX; ibx++) {
-      for (int iby=binminY; iby<binmaxY; iby++) {
-	
-	  hietaY->SetBinContent(ibx, iby,hietaY->GetBinContent(ibx, iby-1)+heta->GetBinContent(ibx, iby));
-	  
-	  hietaX->SetBinContent(ibx, iby,hietaX->GetBinContent(ibx-1, iby)+heta->GetBinContent(ibx, iby));
-	 
-	  
-	  
-	}
-	   
-	     }  
-
-
-  for (int ibx=binminX; ibx<binmaxX; ibx++) {
-      for (int iby=binminY; iby<binmaxY; iby++) {
-
-	  hietaY->SetBinContent(ibx,iby,hietaY->GetBinContent(ibx,iby)/hietaY->GetBinContent(ibx,binmaxY-1));
-	  hietaX->SetBinContent(ibx,iby,hietaX->GetBinContent(ibx,iby)/hietaX->GetBinContent(binmaxX-1,iby));
-	  
-	}
-
-	     }
- 
-      for (int iby=binminY; iby<binmaxY; iby++) 
-	     h1etaY->SetBinContent(iby+1,h1etaY->GetBinContent(iby)+hetaY->GetBinContent(iby+1)/hetaY->Integral(binminY,binmaxY));
-
-	   for (int ibx=binminX; ibx<binmaxX; ibx++)
-		  h1etaX->SetBinContent(ibx+1,h1etaX->GetBinContent(ibx)+hetaX->GetBinContent(ibx+1)/hetaX->Integral(binminX,binmaxX));
-
-		for (int ibx=binmaxX; ibx<heta->GetNbinsX()+1; ibx++)
-		  h1etaX->SetBinContent(ibx,1);
-		for (int iby=binmaxX; iby<heta->GetNbinsY()+1; iby++)
-		  h1etaY->SetBinContent(iby,1);
-
-
-      for (int ibx=binmaxX-1; ibx<heta->GetNbinsX(); ibx++) {
-	  
-      for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	  hietaX->SetBinContent(ibx+1,iby+1,1);
-	}
-	     }
-	  
-
-      for (int iby=0; iby<binminY+1; iby++) {
-	  for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	      hietaX->SetBinContent(ibx+1,iby+1,hietaX->GetBinContent(ibx+1,binminY+1));
-	    }
-	}
-
-
-      for (int iby=binmaxY-1; iby<heta->GetNbinsY(); iby++) {
-	  for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	      hietaX->SetBinContent(ibx+1,iby+1,hietaX->GetBinContent(ibx+1,binmaxY-1));
-	    }
-	}
-
-
-
-      for (int iby=binmaxX-1; iby<heta->GetNbinsY(); iby++) {
-	  
-      for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	  hietaY->SetBinContent(ibx+1,iby+1,1);
-	}
-	     }
-	  
-
-
-      for (int ibx=0; ibx<binminX+1; ibx++) {
-	  for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	      hietaY->SetBinContent(ibx+1,iby+1,hietaY->GetBinContent(binminX+1, iby+1));
-	    }
-	}
-
-
-      for (int ibx=binmaxX-1; ibx<heta->GetNbinsX(); ibx++) {
-	  for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	      hietaY->SetBinContent(ibx+1,iby+1,hietaY->GetBinContent(binmaxX-1, iby+1));
-	    }
-	}
-
-  
-
-
-  // new TCanvas();
-  // hietaY->Draw("colz");
-  // gPad->Modified();
-  // gPad->Update();
-  
-  // new TCanvas();
-  // hietaX->Draw("colz");
-  // gPad->Modified();
-  // gPad->Update();
-  // new TCanvas();
-  // h1etaX->Draw();
-  // gPad->Modified();
-  // gPad->Update();
-  // new TCanvas();
-  // h1etaY->Draw();
-  // gPad->Modified();
-  // gPad->Update();
-  
-
-  char foutName[1000];
-  sprintf(foutName,"/local_zfs_raid/tomcat_20160528/trees/img_%s_eta_gcorr_nb%d.root",name,nb);
-    
-
-   TFile *fout=new TFile(foutName, "RECREATE");
-  Double_t data[9], gain=1;
-  Double_t dum[9], sDum[2][2], etax, etay, sum, totquad;
-  Int_t x,y,f;
-  int ix, iy, skip;
-
-  Long64_t nentries=ch->GetEntries();
-  ch->SetBranchAddress("iFrame",&f);
-  ch->SetBranchAddress("x",&x);
-  ch->SetBranchAddress("y",&y);
-  ch->SetBranchAddress("data",dum);
-  Long64_t ie;
-
-  TH2D *imgLR=new TH2D("imgLR","imgLR",400,0,400,200,100,300);
-  TH2D *imgHR=new TH2D("imgHR","imgHR",400*nb,0,400,200*nb,100,300);
-  // TH2D *imgHR1=new TH2D("imgHR1","imgHR1",400*25,0,400,200*25,100,300);
-  
-
-  // TCanvas *c1=new TCanvas();
-  // imgLR->Draw("colz");
-  //  TCanvas *c2=new TCanvas();
-  //  imgHR->Draw("colz");
-  //  TCanvas *c3=new TCanvas();
-  //  imgHR1->Draw("colz");
-
-  cout << "Chain has " << nentries*1E-6 << "M entries " << endl;
-  Double_t etamax=hietaX->GetXaxis()->GetBinCenter(hietaX->GetNbinsX());
-  Double_t etamin=hietaX->GetXaxis()->GetBinCenter(0);
-
-  char name1[100],name2[100],name3[100];
-  sprintf(name1,"%sLR",name);
-  sprintf(name2,"%sHR",name);
-  sprintf(name3,"%sHR1",name);
-
-  for (ie=0; ie<nentries; ie++) {
-    skip=1;
-    if (ch->GetEntry(ie)) {  
-    skip=0;
-      for (ix=0; ix<3; ix++) {
-      	if (skip==0) {
-      	  for (iy=0; iy<3; iy++) {
-      	    if (gmap==NULL) {
-      	      data[ix+iy*3]=dum[ix+iy*3];
-      	    } else {
-      	      gain=gmap->GetBinContent(gmap->GetXaxis()->FindBin(x), gmap->GetYaxis()->FindBin(y));
-      	      if (gain>2000 && gain<3000) {
-      		data[ix+iy*3]=dum[ix+iy*3]/gain;
-      		//	cout << dum[ix+iy*3] << " " << gain << " " << data[ix+iy*3] << endl;
-      	      } else
-      		skip=1;
-      	    }
-      	  }
-      	}
-      }
-   
-    }  
-     if (skip==0) {
-      slsInterpolation::calcEta(data, etax, etay, sum, totquad, sDum);
-       }
-      if (etax<etamin || etay<etamin || etax>etamax || etay>etamax || totquad/sum<0.8 || totquad/sum>1.2) skip=1;
-    
-      if (skip==0) {
-	imgLR->Fill(x,y);
-	imgHR->Fill(x-0.5+hietaX->GetBinContent(hietaX->GetXaxis()->FindBin(etax),hietaX->GetYaxis()->FindBin(etay)),y-0.5+hietaY->GetBinContent(hietaY->GetXaxis()->FindBin(etax),hietaY->GetYaxis()->FindBin(etay)));
-	//	imgHR1->Fill(x-0.5+h1etaX->GetBinContent(h1etaX->FindBin(etax)), y-0.5+h1etaY->GetBinContent(h1etaY->FindBin(etay)));
-    }
-     if (ie%1000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-     } 
-     if (ie%10000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();export PATH=/afs/psi.ch/project/sls_det_firmware/jungfrau_software/uClinux-2010_64bit/bfin-uclinux/bin:$PATH
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-       cout << " " << ((float)ie)*100./((float)nentries)<< "%" << endl;
-       imgLR->Write(name1,TObject::kOverwrite);
-       imgHR->Write(name2,TObject::kOverwrite);
-       //    imgHR1->Write(name3,TObject::kOverwrite);
-     }
-    
-  }
-  imgLR->Write(name1,TObject::kOverwrite);
-  imgHR->Write(name2,TObject::kOverwrite);
-  // imgHR1->Write(name3,TObject::kOverwrite);
- 
-  // c1->cd();
-  // imgLR->DrawCopy("colz");
-  // c2->cd();
-  // imgHR->DrawCopy("colz");
-  // c3->cd();
-  // imgHR1->DrawCopy("colz");
-  
-  fout->Close();
-
-}
-
-TH2D *interpPos(char *name, int ip) {
-
-  char chainName[1000];
-  sprintf(chainName,"/local_zfs_raid/tomcat_20160528/trees/%s_t*.root",name);
-
-  const Double_t Delta_eta=0.015;
-
-
-  char gName[1000];
-  sprintf(gName,"/local_zfs_raid/tomcat_20160528/trees/gmap_eta_blank_%d.root",ip);
-  TFile *fg=new TFile(gName);
-  TH2F *gmap=(TH2F*)fg->Get("gmap");
-  // TH2F *heta=(TH2F*)fg->Get("heta");
-  
-  sprintf(gName,"/local_zfs_raid/tomcat_20160528/trees/hpos_anna_%d.root",ip);
-  TFile *fp=new TFile(gName);
-  TH2F *hpos=(TH2F*)fp->Get("hpos");
-
-  TChain *ch=new TChain(name);
-  ch->Add(chainName);
-
-  // TFile *ft=new TFile("/local_zfs_raid/tomcat_20160528/trees/grating_1d_t0_v4.root");
-  // TTree *ch=(TTree*)ft->Get("grating_1d");
-
-  // ch->Draw("y:x>>hh(400,0,400,400,0,400)","","colz");
-  // gPad->Modified();
-  // gPad->Update();
-  
-
-  
-  char foutName[1000];
-  sprintf(foutName,"/local_zfs_raid/tomcat_20160528/trees/img_%s_pos_gmap_v2.root",name);
-    
-
-  TFile *fout=new TFile(foutName, "RECREATE");
-  Double_t data[9], gain=1;
-  Double_t dum[9], sDum[2][2], etax, etay, sum, totquad;
-  Int_t x,y,f;
-  int ix, iy, skip;
-
-  Long64_t nentries=ch->GetEntries();
-  ch->SetBranchAddress("iFrame",&f);
-  ch->SetBranchAddress("x",&x);
-  ch->SetBranchAddress("y",&y);
-  ch->SetBranchAddress("data",dum);
-  Long64_t ie;
-
-  TH2D *imgLR=new TH2D("imgLR","imgLR",400,0,400,200,100,300);
-  TH2D *imgHR=new TH2D("imgHR","imgHR",400*25,0,400,200*25,100,300);
-  TH2D *imgHR1=new TH2D("imgHR1","imgHR1",400*25,0,400,200*25,100,300);
-  
-
-  TCanvas *c1=new TCanvas();
-  imgLR->Draw("colz");
-   TCanvas *c2=new TCanvas();
-   imgHR->Draw("colz");
-   TCanvas *c3=new TCanvas();
-   imgHR1->Draw("colz");
-
-  cout << "Chain has " << nentries*1E-6 << "M entries " << endl;
-  int ppos, xpos, ypos;
-  char name1[100],name2[100],name3[100];
-  sprintf(name1,"%sLR",name);
-  sprintf(name2,"%sHR",name);
-  sprintf(name3,"%sHR1",name);
-
-  for (ie=0; ie<nentries; ie++) {
-    skip=1;
-    if (ch->GetEntry(ie)) {  
-    skip=0;
-      for (ix=0; ix<3; ix++) {
-      	if (skip==0) {
-      	  for (iy=0; iy<3; iy++) {
-      	    if (gmap==NULL) {
-      	      data[ix+iy*3]=dum[ix+iy*3];
-      	    } else {
-      	      gain=gmap->GetBinContent(gmap->GetXaxis()->FindBin(x), gmap->GetYaxis()->FindBin(y));
-      	      if (gain>2000 && gain<3000) {
-      		data[ix+iy*3]=dum[ix+iy*3]/gain;
-      		//	cout << dum[ix+iy*3] << " " << gain << " " << data[ix+iy*3] << endl;
-      	      } else
-      		skip=1;
-      	    }
-      	  }
-      	}
-      }
-   
-    }  
-     if (skip==0) {
-       slsInterpolation::calcEta(data, etax, etay, sum, totquad, sDum);
-     }
-     if (totquad/sum<0.8 || totquad/sum>1.2) skip=1;
-     
-     if (skip==0) {
-       imgLR->Fill(x,y);
-       ppos=hpos->GetBinContent(hpos->GetXaxis()->FindBin(etax),hpos->GetYaxis()->FindBin(etay));
-       xpos=ppos/25;
-       ypos=ppos%25;
-       imgHR->Fill(x-0.5+((Double_t)xpos+0.1)/25.,y-0.5+((Double_t)ypos+0.1)/25.);
-     }
-     if (ie%1000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-     } 
-     if (ie%10000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();export PATH=/afs/psi.ch/project/sls_det_firmware/jungfrau_software/uClinux-2010_64bit/bfin-uclinux/bin:$PATH
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-       cout << " " << ((float)ie)*100./((float)nentries)<< "%" << endl;
-       imgLR->Write(name1,TObject::kOverwrite);
-       imgHR->Write(name2,TObject::kOverwrite);
-       imgHR1->Write(name3,TObject::kOverwrite);
-     }
-    
-  }
-  imgLR->Write(name1,TObject::kOverwrite);
-  imgHR->Write(name2,TObject::kOverwrite);
-  imgHR1->Write(name3,TObject::kOverwrite);
- 
-  // c1->cd();
-  // imgLR->DrawCopy("colz");
-  // c2->cd();
-  // imgHR->DrawCopy("colz");
-  // c3->cd();
-  // imgHR1->DrawCopy("colz");
-  
-  fout->Close();
-
-}
-
-
-
-
-
-TH2F *iterate(TH2F *heta, TH2F *hpos, int i) {
-  int ipx,ipy;
-
-
-  TH2F *hpos2=(TH2F*)heta->Clone("hpos");
-  hpos2->Reset();
-  
-  if (i%2==0) {
-
-  TH1F *hx=new TH1F("hx","hx",heta->GetNbinsX(),heta->GetXaxis()->GetXmin(),heta->GetXaxis()->GetXmax());
-  TH1F *hix=(TH1F*)hx->Clone("hix");
-  for ( ipy=0; ipy<25; ipy++) {
-    hx->Reset();
-    hix->Reset();
-    for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-      for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	if ((((int)(hpos->GetBinContent(ibx+1,iby+1)))%25)==ipy) {
-	  hx->SetBinContent(ibx+1,hx->GetBinContent(ibx+1)+heta->GetBinContent(ibx+1,iby+1));
-	}
-      }
-    }
-    ipx=0;
-    for (int ibx=1; ibx<heta->GetNbinsX(); ibx++) {
-      hix->SetBinContent(ibx+1, hix->GetBinContent(ibx)+hx->GetBinContent(ibx+1));
-    }
-    // new TCanvas();
-    //hix->Draw();
-
-    hix->Scale(1./hix->GetBinContent(hix->GetNbinsX()));
-    for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-      if (hix->GetBinContent(ibx+1)>((float)(ipx+1))/25.) ipx++;
-      for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	if ((((int)hpos->GetBinContent(ibx+1,iby+1))%25)==ipy) {
-	  hpos2->SetBinContent(ibx+1,iby+1,25*ipx+ipy);
-	
-	}
-      }
-    }
-  }
-
-  delete hx;
-  delete hix;
-  
-  
-  } else {
-  TH1F *hy=new TH1F("hy","hy",heta->GetNbinsY(),heta->GetYaxis()->GetXmin(),heta->GetYaxis()->GetXmax());
-  TH1F *hiy=(TH1F*)hy->Clone("hiy");
-  for ( ipx=0; ipx<25; ipx++) {
-    hy->Reset();
-    hiy->Reset();
-    for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-      for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-  	if ((((int)hpos->GetBinContent(ibx+1,iby+1))/25)==ipx) {
-  	  hy->SetBinContent(iby+1,hy->GetBinContent(iby+1)+heta->GetBinContent(ibx+1,iby+1));
-  	}
-      }
-    }
-    ipy=0;
-    for (int iby=1; iby<heta->GetNbinsY(); iby++) {
-      hiy->SetBinContent(iby+1, hiy->GetBinContent(iby)+hy->GetBinContent(iby+1));
-    }
-    hiy->Scale(1./hiy->GetBinContent(hiy->GetNbinsX()));
-    for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-  	      if (hiy->GetBinContent(iby+1)>((float)(ipy+1))/25.) ipy++;
-  	      for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-  		if ((((int)hpos->GetBinContent(ibx+1,iby+1))/25)==ipx) {
-  		  hpos2->SetBinContent(ibx+1,iby+1,ipx*25+ipy);//hpos2->GetBinContent(ibx+1,iby+1)+ipy);
-  		}
-  	      }
-    }
-  }
-  delete hy;
-  delete hiy;
-  }
-
-
-
-  // new TCanvas();
-  // heta->Draw("colz");
-  // hnet->Draw("same");
-  
-  
-  // new TCanvas();
-  // hpos2->Draw("colz");
-  
-
-
-  
-
-
-
-
-
-
-  
-  return hpos2;
-
-  }
-
-
-
-TH2F *etaTest() {
-
-  TMultiGraph *mg=new TMultiGraph();
-  TGraph *g=new TGraph();
-  TGraph *g1=new TGraph();
-
-  mg->Add(g);
-  mg->Add(g1);
-
-  const Double_t Delta_eta=0.1;
-
-
-  char gName[1000];
-  sprintf(gName,"/local_zfs_raid/tomcat_20160528/trees/gmap_eta_blank.root");
-  TFile *fg=new TFile(gName);
-  TH2F *gmap=(TH2F*)fg->Get("gmap");
-  TH2F *heta=(TH2F*)fg->Get("heta");
-  
-
-
-  
-  
-
-
-  TH2F *hietaX=(TH2F*)heta->Clone("hietaX");
-  TH2F *hietaY=(TH2F*)heta->Clone("hietaY");
-  hietaX->SetTitle("hietaX");
-  hietaY->SetTitle("hietaY");
-  hietaX->Reset();
-  hietaY->Reset();
-  
-  TH2F *hnet=(TH2F*)heta->Clone("hnet");
-  hnet->Reset();
-  TH2F *hpos=(TH2F*)heta->Clone("hpos");
-  hpos->Reset();
-
-  TH1D *hetaY=heta->ProjectionX();
-  TH1D *hetaX=heta->ProjectionY();
-
-  TH1D *h1etaX=(TH1D*)hetaX->Clone("h1etaX");
-  TH1D *h1etaY=(TH1D*)hetaY->Clone("h1etaY");
-  h1etaX->SetTitle("h1etaX");
-  h1etaY->SetTitle("h1etaY");
-  h1etaX->Reset();
-  h1etaY->Reset();
-  
-  int binminX=heta->GetXaxis()->FindBin(-Delta_eta);
-  int binmaxX=heta->GetXaxis()->FindBin(1+Delta_eta);
-  int binminY=heta->GetYaxis()->FindBin(-Delta_eta);
-  int binmaxY=heta->GetYaxis()->FindBin(1+Delta_eta);
-  
-  
-  TH1D *hetaYp=heta->ProjectionX("py",binminY,binmaxY);
-  TH1D *hetaXp=heta->ProjectionY("px",binminX,binmaxX);
-
-  for (int ibx=binminX; ibx<binmaxX; ibx++) {
-      for (int iby=binminY; iby<binmaxY; iby++) {
-	
-	  hietaY->SetBinContent(ibx, iby,hietaY->GetBinContent(ibx, iby-1)+heta->GetBinContent(ibx, iby));
-	  
-	  hietaX->SetBinContent(ibx, iby,hietaX->GetBinContent(ibx-1, iby)+heta->GetBinContent(ibx, iby));
-	 
-	  
-	  
-	}
-	   
-	     }  
-
-
-  for (int ibx=binminX; ibx<binmaxX; ibx++) {
-      for (int iby=binminY; iby<binmaxY; iby++) {
-
-	  hietaY->SetBinContent(ibx,iby,hietaY->GetBinContent(ibx,iby)/hietaY->GetBinContent(ibx,binmaxY-1));
-	  hietaX->SetBinContent(ibx,iby,hietaX->GetBinContent(ibx,iby)/hietaX->GetBinContent(binmaxX-1,iby));
-	  
-	}
-
-	     }
- 
-      for (int iby=binminY; iby<binmaxY; iby++) 
-	     h1etaY->SetBinContent(iby+1,h1etaY->GetBinContent(iby)+hetaY->GetBinContent(iby+1)/hetaY->Integral(binminY,binmaxY));
-
-	   for (int ibx=binminX; ibx<binmaxX; ibx++)
-		  h1etaX->SetBinContent(ibx+1,h1etaX->GetBinContent(ibx)+hetaX->GetBinContent(ibx+1)/hetaX->Integral(binminX,binmaxX));
-
-		for (int ibx=binmaxX; ibx<heta->GetNbinsX()+1; ibx++)
-		  h1etaX->SetBinContent(ibx,1);
-		for (int iby=binmaxX; iby<heta->GetNbinsY()+1; iby++)
-		  h1etaY->SetBinContent(iby,1);
-
-
-      for (int ibx=binmaxX-1; ibx<heta->GetNbinsX(); ibx++) {
-	  
-      for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	  hietaX->SetBinContent(ibx+1,iby+1,1);
-	}
-	     }
-	  
-
-      for (int iby=0; iby<binminY+1; iby++) {
-	  for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	      hietaX->SetBinContent(ibx+1,iby+1,hietaX->GetBinContent(ibx+1,binminY+1));
-	    }
-	}
-
-
-      for (int iby=binmaxY-1; iby<heta->GetNbinsY(); iby++) {
-	  for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	      hietaX->SetBinContent(ibx+1,iby+1,hietaX->GetBinContent(ibx+1,binmaxY-1));
-	    }
-	}
-
-
-
-      for (int iby=binmaxX-1; iby<heta->GetNbinsY(); iby++) {
-	  
-      for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	  hietaY->SetBinContent(ibx+1,iby+1,1);
-	}
-	     }
-	  
-
-
-      for (int ibx=0; ibx<binminX+1; ibx++) {
-	  for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	      hietaY->SetBinContent(ibx+1,iby+1,hietaY->GetBinContent(binminX+1, iby+1));
-	    }
-	}
-
-
-      for (int ibx=binmaxX-1; ibx<heta->GetNbinsX(); ibx++) {
-	  for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	      hietaY->SetBinContent(ibx+1,iby+1,hietaY->GetBinContent(binmaxX-1, iby+1));
-	    }
-	}
-
-  
-      int ipx=0;
-      int ipy=0;
-
-      for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	ipy=0;
-	for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	  if (hietaY->GetBinContent(ibx+1,iby+1)>((float)ipy+1)/25.) {
-	    hnet->SetBinContent(ibx+1,iby+1,1);
-	    ipy++;
-	  }
-	  hpos->SetBinContent(ibx+1,iby+1,ipy);
-	}
-      } 
-      
-      for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	ipx=0;
-	for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	  if (hietaX->GetBinContent(ibx+1,iby+1)>((float)ipx+1)/25.)	    ipx++;
-	  hpos->SetBinContent(ibx+1,iby+1,hpos->GetBinContent(ibx+1,iby+1)+25*ipx);
-	}
-      }
-      new TCanvas();
-      heta->Draw("colz");
-
-
-      for (int iby=1; iby<heta->GetNbinsY(); iby++) {
-	for (int ibx=1; ibx<heta->GetNbinsX(); ibx++) {
-	  if (hpos->GetBinContent(ibx+1,iby+1)!=hpos->GetBinContent(ibx,iby+1)) hnet->SetBinContent(ibx+1,iby+1,1);
-	  if (hpos->GetBinContent(ibx+1,iby+1)!=hpos->GetBinContent(ibx+1,iby)) hnet->SetBinContent(ibx+1,iby+1,1);
-	  else hnet->SetBinContent(ibx+1,iby+1,0);
-	}
-      }
-      
-
-      hnet->DrawCopy("same");
-
-
-      TH2F *hff=new TH2F("hff","hff",25,0,25,25,0,25);
-      Double_t mm=heta->Integral()/(hff->GetNbinsX()*hff->GetNbinsY());
-      
-      int ibp;
-      for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	  ibp=hpos->GetBinContent(ibx+1,iby+1);
-	  hff->Fill(ibp/25,ibp%25,heta->GetBinContent(ibx+1,iby+1));
-	}
-      }
-      
-      Double_t chi2=0;
-      Double_t maxS=0;
-      for (int ibx=0; ibx<25; ibx++)
-	for (int iby=0; iby<25; iby++) {
-	  chi2+=(hff->GetBinContent(ibx+1,iby+1)-mm)*(hff->GetBinContent(ibx+1,iby+1)-mm)/mm;
-	  if ((hff->GetBinContent(ibx+1,iby+1)-mm)*(hff->GetBinContent(ibx+1,iby+1))>maxS) maxS=(hff->GetBinContent(ibx+1,iby+1)-mm)*(hff->GetBinContent(ibx+1,iby+1)-mm);
-	}										  
-      chi2/=625.;
-      maxS=TMath::Sqrt(maxS/mm);
-      
-	  cout << "Start Chi2 "<< chi2 << " maxS "<< maxS << endl;
-      
-      g->SetPoint(0,0,chi2);
-    g1->SetPoint(0,0,maxS);
-
-      new TCanvas();
-      char tit[1000];
-      sprintf(tit,"Start Chi2=%d",(int)chi2);
-      hff->SetTitle(tit);
-      hff->DrawCopy("colz");
-      
-
-  TH2F *hpos2;
-  int i;
-  new TCanvas();
-  for (i=0; i<500; i++) {
-    hpos2=iterate(heta,hpos,i);
-    delete hpos;
-    hpos=hpos2;
-    
-    
-    hff->Reset();
-
-    for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-      for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	ibp=hpos->GetBinContent(ibx+1,iby+1);
-	hff->Fill(ibp/25,ibp%25,heta->GetBinContent(ibx+1,iby+1));
-      }
-    }
-    
-    chi2=0;
-    maxS=0;
-    for (int ibx=0; ibx<25; ibx++)
-      for (int iby=0; iby<25; iby++) {
-	chi2+=(hff->GetBinContent(ibx+1,iby+1)-mm)*(hff->GetBinContent(ibx+1,iby+1)-mm)/mm;
-	if ((hff->GetBinContent(ibx+1,iby+1)-mm)*(hff->GetBinContent(ibx+1,iby+1))>maxS) maxS=(hff->GetBinContent(ibx+1,iby+1)-mm)*(hff->GetBinContent(ibx+1,iby+1)-mm);
-
-      }
-    chi2/=625.;
-    maxS=TMath::Sqrt(maxS/mm);
-  
-    cout << "Iteration " << i << " Chi2 "<< chi2 << " maxS "<< maxS<< endl;
- 
-    g->SetPoint(i+1,i+1,chi2);
-    g1->SetPoint(i+1,i+1,maxS);
-    if (i%100==0) {
-
-      g->Draw("ALP");
-      g1->Draw("LP");
-      gPad->Modified();
-      gPad->Update();
-    }
-    
-  }
-
-  new TCanvas();
-  heta->Draw("colz");
-
-
-  for (int iby=1; iby<heta->GetNbinsY(); iby++) {
-    for (int ibx=1; ibx<heta->GetNbinsX(); ibx++) {
-      if (hpos->GetBinContent(ibx+1,iby+1)!=hpos->GetBinContent(ibx,iby+1)) hnet->SetBinContent(ibx+1,iby+1,1);
-      else if (hpos->GetBinContent(ibx+1,iby+1)!=hpos->GetBinContent(ibx+1,iby)) hnet->SetBinContent(ibx+1,iby+1,1);
-      else hnet->SetBinContent(ibx+1,iby+1,0);
-    }
-  }
-      
-
-  hnet->DrawCopy("same");
-
-  new TCanvas();
-  sprintf(tit,"Iteration %d Chi2=%d",i,(int)chi2);
-  hff->SetTitle(tit);
-  hff->DrawCopy("colz");
-
-  TFile *fffff=new TFile("/local_zfs_raid/tomcat_20160528/trees/hpos_anna.root","RECREATE");
-  hpos->Write("hpos");
-  fffff->Close();
-
-
-
-  return hpos;
-  
-  
-}
-
-
-TH2D *interpV2(char *name, int ip, double sc=30./25.) {
-
-  char chainName[1000];
-  sprintf(chainName,"/local_zfs_raid/tomcat_20160528/trees/%s_t*.root",name);
-
-  const Double_t Delta_eta=0.05;
-
-
-  char gName[1000];
-  sprintf(gName,"/local_zfs_raid/tomcat_20160528/trees/gmap_eta_blank_%d.root",ip);
-  TFile *fg=new TFile(gName);
-  TH2F *gmap=(TH2F*)fg->Get("gmap");
-  TH2F *heta=(TH2F*)fg->Get("heta");
-  
-  TChain *ch=new TChain(name);
-  ch->Add(chainName);
-
-  // TFile *ft=new TFile("/local_zfs_raid/tomcat_20160528/trees/grating_1d_t0_v4.root");
-  // TTree *ch=(TTree*)ft->Get("grating_1d");
-
-  // ch->Draw("y:x>>hh(400,0,400,400,0,400)","","colz");
-  // gPad->Modified();
-  // gPad->Update();
-  
-
-  
-  
-
-
-  TH2F *hietaX=(TH2F*)heta->Clone("hietaX");
-  TH2F *hietaY=(TH2F*)heta->Clone("hietaY");
-  hietaX->SetTitle("hietaX");
-  hietaY->SetTitle("hietaY");
-  hietaX->Reset();
-  hietaY->Reset();
-  
-
-
-  TH1D *hetaY=heta->ProjectionX();
-  TH1D *hetaX=heta->ProjectionY();
-
-  TH1D *h1etaX=(TH1D*)hetaX->Clone("h1etaX");
-  TH1D *h1etaY=(TH1D*)hetaY->Clone("h1etaY");
-  h1etaX->SetTitle("h1etaX");
-  h1etaY->SetTitle("h1etaY");
-  h1etaX->Reset();
-  h1etaY->Reset();
-  
-  int binminX=heta->GetXaxis()->FindBin(-Delta_eta);
-  int binmaxX=heta->GetXaxis()->FindBin(1+Delta_eta);
-  int binminY=heta->GetYaxis()->FindBin(-Delta_eta);
-  int binmaxY=heta->GetYaxis()->FindBin(1+Delta_eta);
-  
-  
-  TH1D *hetaYp=heta->ProjectionX("py",binminY,binmaxY);
-  TH1D *hetaXp=heta->ProjectionY("px",binminX,binmaxX);
-
-  for (int ibx=binminX; ibx<binmaxX; ibx++) {
-      for (int iby=binminY; iby<binmaxY; iby++) {
-	
-	  hietaY->SetBinContent(ibx, iby,hietaY->GetBinContent(ibx, iby-1)+heta->GetBinContent(ibx, iby));
-	  
-	  hietaX->SetBinContent(ibx, iby,hietaX->GetBinContent(ibx-1, iby)+heta->GetBinContent(ibx, iby));
-	 
-	  
-	  
-	}
-	   
-	     }  
-
-
-  for (int ibx=binminX; ibx<binmaxX; ibx++) {
-      for (int iby=binminY; iby<binmaxY; iby++) {
-
-	  hietaY->SetBinContent(ibx,iby,hietaY->GetBinContent(ibx,iby)/hietaY->GetBinContent(ibx,binmaxY-1));
-	  hietaX->SetBinContent(ibx,iby,hietaX->GetBinContent(ibx,iby)/hietaX->GetBinContent(binmaxX-1,iby));
-	  
-	}
-
-	     }
- 
-      for (int iby=binminY; iby<binmaxY; iby++) 
-	     h1etaY->SetBinContent(iby+1,h1etaY->GetBinContent(iby)+hetaY->GetBinContent(iby+1)/hetaY->Integral(binminY,binmaxY));
-
-	   for (int ibx=binminX; ibx<binmaxX; ibx++)
-		  h1etaX->SetBinContent(ibx+1,h1etaX->GetBinContent(ibx)+hetaX->GetBinContent(ibx+1)/hetaX->Integral(binminX,binmaxX));
-
-		for (int ibx=binmaxX; ibx<heta->GetNbinsX()+1; ibx++)
-		  h1etaX->SetBinContent(ibx,1);
-		for (int iby=binmaxX; iby<heta->GetNbinsY()+1; iby++)
-		  h1etaY->SetBinContent(iby,1);
-
-
-      for (int ibx=binmaxX-1; ibx<heta->GetNbinsX(); ibx++) {
-	  
-      for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	  hietaX->SetBinContent(ibx+1,iby+1,1);
-	}
-	     }
-	  
-
-      for (int iby=0; iby<binminY+1; iby++) {
-	  for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	      hietaX->SetBinContent(ibx+1,iby+1,hietaX->GetBinContent(ibx+1,binminY+1));
-	    }
-	}
-
-
-      for (int iby=binmaxY-1; iby<heta->GetNbinsY(); iby++) {
-	  for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	      hietaX->SetBinContent(ibx+1,iby+1,hietaX->GetBinContent(ibx+1,binmaxY-1));
-	    }
-	}
-
-
-
-      for (int iby=binmaxX-1; iby<heta->GetNbinsY(); iby++) {
-	  
-      for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	  hietaY->SetBinContent(ibx+1,iby+1,1);
-	}
-	     }
-	  
-
-
-      for (int ibx=0; ibx<binminX+1; ibx++) {
-	  for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	      hietaY->SetBinContent(ibx+1,iby+1,hietaY->GetBinContent(binminX+1, iby+1));
-	    }
-	}
-
-
-      for (int ibx=binmaxX-1; ibx<heta->GetNbinsX(); ibx++) {
-	  for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	      hietaY->SetBinContent(ibx+1,iby+1,hietaY->GetBinContent(binmaxX-1, iby+1));
-	    }
-	}
-
-  
-
-
-  new TCanvas();
-  hietaY->Draw("colz");
-  gPad->Modified();
-  gPad->Update();
-  
-  new TCanvas();
-  hietaX->Draw("colz");
-  gPad->Modified();
-  gPad->Update();
-  new TCanvas();
-  h1etaX->Draw();
-  gPad->Modified();
-  gPad->Update();
-  new TCanvas();
-  h1etaY->Draw();
-  gPad->Modified();
-  gPad->Update();
-  
-
-  char foutName[1000];
-  sprintf(foutName,"/local_zfs_raid/tomcat_20160528/trees/img_%s_eta_gmap_v2.root",name);
-    
-
-   TFile *fout=new TFile(foutName, "RECREATE");
-  Double_t data[9], gain=1;
-  Double_t dum[9], sDum[2][2], etax, etay, sum, totquad;
-  Int_t x,y,f;
-  int ix, iy, skip;
-
-  Long64_t nentries=ch->GetEntries();
-  ch->SetBranchAddress("iFrame",&f);
-  ch->SetBranchAddress("x",&x);
-  ch->SetBranchAddress("y",&y);
-  ch->SetBranchAddress("data",dum);
-  Long64_t ie;
-
-  TH2D *imgLR=new TH2D("imgLR","imgLR",400,0,400,200,100,300);
-  TH2D *imgHR=new TH2D("imgHR","imgHR",400*25,0,400,200*25,100,300);
-  TH2D *imgHR1=new TH2D("imgHR1","imgHR1",400*25,0,400,200*25,100,300);
-  
-
-  TCanvas *c1=new TCanvas();
-  imgLR->Draw("colz");
-   TCanvas *c2=new TCanvas();
-   imgHR->Draw("colz");
-   TCanvas *c3=new TCanvas();
-   imgHR1->Draw("colz");
-
-  cout << "Chain has " << nentries*1E-6 << "M entries " << endl;
-  Double_t etamax=hietaX->GetXaxis()->GetBinCenter(hietaX->GetNbinsX());
-  Double_t etamin=hietaX->GetXaxis()->GetBinCenter(0);
-
-  char name1[100],name2[100],name3[100];
-  sprintf(name1,"%sLR",name);
-  sprintf(name2,"%sHR",name);
-  sprintf(name3,"%sHR1",name);
-
-  for (ie=0; ie<nentries; ie++) {
-    skip=1;
-    if (ch->GetEntry(ie)) {  
-    skip=0;
-      for (ix=0; ix<3; ix++) {
-      	if (skip==0) {
-      	  for (iy=0; iy<3; iy++) {
-      	    if (gmap==NULL) {
-      	      data[ix+iy*3]=dum[ix+iy*3];
-      	    } else {
-      	      gain=gmap->GetBinContent(gmap->GetXaxis()->FindBin(x), gmap->GetYaxis()->FindBin(y));
-      	      if (gain>2000 && gain<3000) {
-      		data[ix+iy*3]=dum[ix+iy*3]/gain;
-      		//	cout << dum[ix+iy*3] << " " << gain << " " << data[ix+iy*3] << endl;
-      	      } else
-      		skip=1;
-      	    }
-      	  }
-      	}
-      }
-   
-    }  
-     if (skip==0) {
-      slsInterpolation::calcEta(data, etax, etay, sum, totquad, sDum);
-       }
-      if (etax<etamin || etay<etamin || etax>etamax || etay>etamax || totquad/sum<0.8 || totquad/sum>1.2) skip=1;
-    
-      if (skip==0) {
-	imgLR->Fill(x,y);
-	imgHR->Fill(x-0.5+hietaX->GetBinContent(hietaX->GetXaxis()->FindBin(etax),hietaX->GetYaxis()->FindBin(etay))*sc-0.5*sc,y-0.5+hietaY->GetBinContent(hietaY->GetXaxis()->FindBin(etax),hietaY->GetYaxis()->FindBin(etay))*sc-0.5*sc);
-	imgHR1->Fill(x-0.5+h1etaX->GetBinContent(h1etaX->FindBin(etax))*sc-0.5*sc, y-0.5+h1etaY->GetBinContent(h1etaY->FindBin(etay)*sc-0.5*sc));
-    }
-     if (ie%1000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-     } 
-     if (ie%10000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-       cout << " " << ((float)ie)*100./((float)nentries)<< "%" << endl;
-       imgLR->Write(name1,TObject::kOverwrite);
-       imgHR->Write(name2,TObject::kOverwrite);
-       imgHR1->Write(name3,TObject::kOverwrite);
-     }
-    
-  }
-  imgLR->Write(name1,TObject::kOverwrite);
-  imgHR->Write(name2,TObject::kOverwrite);
-  imgHR1->Write(name3,TObject::kOverwrite);
- 
-  // c1->cd();
-  // imgLR->DrawCopy("colz");
-  // c2->cd();
-  // imgHR->DrawCopy("colz");
-  // c3->cd();
-  // imgHR1->DrawCopy("colz");
-  
-  fout->Close();
-
-}
-
-
-TH2D *interpV3(char *name, int ip, double sc=26./25.) {
-
-  char chainName[1000];
-  sprintf(chainName,"/local_zfs_raid/tomcat_20160528/trees/%s_t*.root",name);
-
-  const Double_t Delta_eta=0.05;
-
-
-  char gName[1000];
-  sprintf(gName,"/local_zfs_raid/tomcat_20160528/trees/gmap_eta_blank_%d.root",ip);
-  TFile *fg=new TFile(gName);
-  TH2F *gmap=(TH2F*)fg->Get("gmap");
-  TH2F *heta=(TH2F*)fg->Get("heta");
-  
-  TChain *ch=new TChain(name);
-  ch->Add(chainName);
-
-  // TFile *ft=new TFile("/local_zfs_raid/tomcat_20160528/trees/grating_1d_t0_v4.root");
-  // TTree *ch=(TTree*)ft->Get("grating_1d");
-
-  // ch->Draw("y:x>>hh(400,0,400,400,0,400)","","colz");
-  // gPad->Modified();
-  // gPad->Update();
-  
-
-  
-  
-
-
-  TH2F *hietaX=(TH2F*)heta->Clone("hietaX");
-  TH2F *hietaY=(TH2F*)heta->Clone("hietaY");
-  hietaX->SetTitle("hietaX");
-  hietaY->SetTitle("hietaY");
-  hietaX->Reset();
-  hietaY->Reset();
-  
-
-
-  TH1D *hetaY=heta->ProjectionX();
-  TH1D *hetaX=heta->ProjectionY();
-
-  TH1D *h1etaX=(TH1D*)hetaX->Clone("h1etaX");
-  TH1D *h1etaY=(TH1D*)hetaY->Clone("h1etaY");
-  h1etaX->SetTitle("h1etaX");
-  h1etaY->SetTitle("h1etaY");
-  h1etaX->Reset();
-  h1etaY->Reset();
-  
-  int binminX=heta->GetXaxis()->FindBin(-Delta_eta);
-  int binmaxX=heta->GetXaxis()->FindBin(1+Delta_eta);
-  int binminY=heta->GetYaxis()->FindBin(-Delta_eta);
-  int binmaxY=heta->GetYaxis()->FindBin(1+Delta_eta);
-  
-  
-  TH1D *hetaYp=heta->ProjectionX("py",binminY,binmaxY);
-  TH1D *hetaXp=heta->ProjectionY("px",binminX,binmaxX);
-
-  for (int ibx=binminX; ibx<binmaxX; ibx++) {
-      for (int iby=binminY; iby<binmaxY; iby++) {
-	
-	  hietaY->SetBinContent(ibx, iby,hietaY->GetBinContent(ibx, iby-1)+heta->GetBinContent(ibx, iby));
-	  
-	  hietaX->SetBinContent(ibx, iby,hietaX->GetBinContent(ibx-1, iby)+heta->GetBinContent(ibx, iby));
-	 
-	  
-	  
-	}
-	   
-	     }  
-
-
-  for (int ibx=binminX; ibx<binmaxX; ibx++) {
-      for (int iby=binminY; iby<binmaxY; iby++) {
-
-	  hietaY->SetBinContent(ibx,iby,hietaY->GetBinContent(ibx,iby)/hietaY->GetBinContent(ibx,binmaxY-1));
-	  hietaX->SetBinContent(ibx,iby,hietaX->GetBinContent(ibx,iby)/hietaX->GetBinContent(binmaxX-1,iby));
-	  
-	}
-
-	     }
- 
-      for (int iby=binminY; iby<binmaxY; iby++) 
-	     h1etaY->SetBinContent(iby+1,h1etaY->GetBinContent(iby)+hetaY->GetBinContent(iby+1)/hetaY->Integral(binminY,binmaxY));
-
-	   for (int ibx=binminX; ibx<binmaxX; ibx++)
-		  h1etaX->SetBinContent(ibx+1,h1etaX->GetBinContent(ibx)+hetaX->GetBinContent(ibx+1)/hetaX->Integral(binminX,binmaxX));
-
-		for (int ibx=binmaxX; ibx<heta->GetNbinsX()+1; ibx++)
-		  h1etaX->SetBinContent(ibx,1);
-		for (int iby=binmaxX; iby<heta->GetNbinsY()+1; iby++)
-		  h1etaY->SetBinContent(iby,1);
-
-
-      for (int ibx=binmaxX-1; ibx<heta->GetNbinsX(); ibx++) {
-	  
-      for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	  hietaX->SetBinContent(ibx+1,iby+1,1);
-	}
-	     }
-	  
-
-      for (int iby=0; iby<binminY+1; iby++) {
-	  for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	      hietaX->SetBinContent(ibx+1,iby+1,hietaX->GetBinContent(ibx+1,binminY+1));
-	    }
-	}
-
-
-      for (int iby=binmaxY-1; iby<heta->GetNbinsY(); iby++) {
-	  for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	      hietaX->SetBinContent(ibx+1,iby+1,hietaX->GetBinContent(ibx+1,binmaxY-1));
-	    }
-	}
-
-
-
-      for (int iby=binmaxX-1; iby<heta->GetNbinsY(); iby++) {
-	  
-      for (int ibx=0; ibx<heta->GetNbinsX(); ibx++) {
-	  hietaY->SetBinContent(ibx+1,iby+1,1);
-	}
-	     }
-	  
-
-
-      for (int ibx=0; ibx<binminX+1; ibx++) {
-	  for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	      hietaY->SetBinContent(ibx+1,iby+1,hietaY->GetBinContent(binminX+1, iby+1));
-	    }
-	}
-
-
-      for (int ibx=binmaxX-1; ibx<heta->GetNbinsX(); ibx++) {
-	  for (int iby=0; iby<heta->GetNbinsY(); iby++) {
-	      hietaY->SetBinContent(ibx+1,iby+1,hietaY->GetBinContent(binmaxX-1, iby+1));
-	    }
-	}
-
-  
-
-
-  new TCanvas();
-  hietaY->Draw("colz");
-  gPad->Modified();
-  gPad->Update();
-  
-  new TCanvas();
-  hietaX->Draw("colz");
-  gPad->Modified();
-  gPad->Update();
-  new TCanvas();
-  h1etaX->Draw();
-  gPad->Modified();
-  gPad->Update();
-  new TCanvas();
-  h1etaY->Draw();
-  gPad->Modified();
-  gPad->Update();
-  
-
-  char foutName[1000];
-  sprintf(foutName,"/local_zfs_raid/tomcat_20160528/trees/img_%s_eta_gmap_v2.root",name);
-    
-
-   TFile *fout=new TFile(foutName, "RECREATE");
-  Double_t data[9], gain=1;
-  Double_t dum[9], sDum[2][2], etax, etay, sum, totquad;
-  Int_t x,y,f;
-  int ix, iy, skip;
-
-  Long64_t nentries=ch->GetEntries();
-  ch->SetBranchAddress("iFrame",&f);
-  ch->SetBranchAddress("x",&x);
-  ch->SetBranchAddress("y",&y);
-  ch->SetBranchAddress("data",dum);
-  Long64_t ie;
-
-  TH2D *imgLR=new TH2D("imgLR","imgLR",400,0,400,200,100,300);
-  TH2D *imgHR=new TH2D("imgHR","imgHR",400*25,0,400,200*25,100,300);
-  TH2D *imgHR1=new TH2D("imgHR1","imgHR1",400*25,0,400,200*25,100,300);
-  
-
-  TCanvas *c1=new TCanvas();
-  imgLR->Draw("colz");
-   TCanvas *c2=new TCanvas();
-   imgHR->Draw("colz");
-   TCanvas *c3=new TCanvas();
-   imgHR1->Draw("colz");
-
-  cout << "Chain has " << nentries*1E-6 << "M entries " << endl;
-  Double_t etamax=hietaX->GetXaxis()->GetBinCenter(hietaX->GetNbinsX());
-  Double_t etamin=hietaX->GetXaxis()->GetBinCenter(0);
-
-  char name1[100],name2[100],name3[100];
-  sprintf(name1,"%sLR",name);
-  sprintf(name2,"%sHR",name);
-  sprintf(name3,"%sHR1",name);
-
-  for (ie=0; ie<nentries; ie++) {
-    skip=1;
-    if (ch->GetEntry(ie)) {  
-    skip=0;
-      for (ix=0; ix<3; ix++) {
-      	if (skip==0) {
-      	  for (iy=0; iy<3; iy++) {
-      	    if (gmap==NULL) {
-      	      data[ix+iy*3]=dum[ix+iy*3];
-      	    } else {
-      	      gain=gmap->GetBinContent(gmap->GetXaxis()->FindBin(x), gmap->GetYaxis()->FindBin(y));
-      	      if (gain>2000 && gain<3000) {
-      		data[ix+iy*3]=dum[ix+iy*3]/gain;
-      		//	cout << dum[ix+iy*3] << " " << gain << " " << data[ix+iy*3] << endl;
-      	      } else
-      		skip=1;
-      	    }
-      	  }
-      	}
-      }
-   
-    }  
-     if (skip==0) {
-      slsInterpolation::calcEta(data, etax, etay, sum, totquad, sDum);
-       }
-       if (etax<etamin || etay<etamin || etax>etamax || etay>etamax || totquad/sum<0.8 || totquad/sum>1.2) skip=1;
-    
-      if (skip==0) {
-	imgLR->Fill(x,y);
-	imgHR->Fill(x-0.5+hietaX->GetBinContent(hietaX->GetXaxis()->FindBin(etax),hietaX->GetYaxis()->FindBin(etay))*sc,y-0.5+hietaY->GetBinContent(hietaY->GetXaxis()->FindBin(etax),hietaY->GetYaxis()->FindBin(etay))*sc);
-	imgHR1->Fill(x-0.5+h1etaX->GetBinContent(h1etaX->FindBin(etax))*sc, y-0.5+h1etaY->GetBinContent(h1etaY->FindBin(etay)*sc));
-    }
-     if (ie%1000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-     } 
-     if (ie%10000000==0) {
-    //   c1->Modified();
-    //   c1->Update();
-    //   c2->Modified();
-    //   c2->Update();
-    //   c3->Modified();
-    //   c3->Update();
-       cout << " " << ((float)ie)*100./((float)nentries)<< "%" << endl;
-       imgLR->Write(name1,TObject::kOverwrite);
-       imgHR->Write(name2,TObject::kOverwrite);
-       imgHR1->Write(name3,TObject::kOverwrite);
-     }
-    
-  }
-  imgLR->Write(name1,TObject::kOverwrite);
-  imgHR->Write(name2,TObject::kOverwrite);
-  imgHR1->Write(name3,TObject::kOverwrite);
- 
-  // c1->cd();
-  // imgLR->DrawCopy("colz");
-  // c2->cd();
-  // imgHR->DrawCopy("colz");
-  // c3->cd();
-  // imgHR1->DrawCopy("colz");
-  
-  fout->Close();
-
-}
-
-TH2D *calcEtaGcorr(int ip) {
-  char name[1000];
-  strcpy(name,"blank");
-  char chainName[1000];
-  sprintf(chainName,"/local_zfs_raid/tomcat_20160528/trees/%s_t*.root",name);
-
-  const Double_t Delta_eta=0.05;
-
-
-  char gName[1000];
-  sprintf(gName,"/local_zfs_raid/tomcat_20160528/trees/gmap_eta_blank_%d.root",ip);
-  TFile *fg=new TFile(gName);
-  TH2F *gmap=(TH2F*)fg->Get("gmap");
-
-  TH2F *heta=(TH2F*)fg->Get("heta");
-
-  TH2F *heta_new=(TH2F*)heta->Clone("heta_gmap");
-
-  heta_new->Reset();
-  
-  TChain *ch=new TChain(name);
-  ch->Add(chainName);
-
-  // TFile *ft=new TFile("/local_zfs_raid/tomcat_20160528/trees/grating_1d_t0_v4.root");
-  // TTree *ch=(TTree*)ft->Get("grating_1d");
-
-  // ch->Draw("y:x>>hh(400,0,400,400,0,400)","","colz");
-  // gPad->Modified();
-  // gPad->Update();
-  
-
-  
-  char foutName[1000];
-  sprintf(foutName,"/local_zfs_raid/tomcat_20160528/trees/gmap_eta_gcorr.root");
-    
-
-   TFile *fout=new TFile(foutName, "RECREATE");
-  Double_t data[9], gain=1;
-  Double_t dum[9], sDum[2][2], etax, etay, sum, totquad;
-  Int_t x,y,f;
-  int ix, iy, skip;
-
-  Long64_t nentries=ch->GetEntries();
-  ch->SetBranchAddress("iFrame",&f);
-  ch->SetBranchAddress("x",&x);
-  ch->SetBranchAddress("y",&y);
-  ch->SetBranchAddress("data",dum);
-  Long64_t ie;
-
-
-  cout << "Chain has " << nentries*1E-6 << "M entries " << endl;
-
-
-
-  for (ie=0; ie<nentries; ie++) {
-    skip=1;
-    if (ch->GetEntry(ie)) {  
-    skip=0;
-      for (ix=0; ix<3; ix++) {
-      	if (skip==0) {
-      	  for (iy=0; iy<3; iy++) {
-      	    if (gmap==NULL) {
-      	      data[ix+iy*3]=dum[ix+iy*3];
-      	    } else {
-      	      gain=gmap->GetBinContent(gmap->GetXaxis()->FindBin(x), gmap->GetYaxis()->FindBin(y));
-      	      if (gain>2000 && gain<3000) {
-      		data[ix+iy*3]=dum[ix+iy*3]/gain;
-      		//	cout << dum[ix+iy*3] << " " << gain << " " << data[ix+iy*3] << endl;
-      	      } else
-      		skip=1;
-      	    }
-      	  }
-      	}
-      }
-   
-    }  
-     if (skip==0) {
-      slsInterpolation::calcEta(data, etax, etay, sum, totquad, sDum);
-      if (totquad/sum<0.8 || totquad/sum>1.2) skip=1;
-    
-      if (skip==0) {
-	heta_new->Fill(etax,etay);
-      }
-     }
-     if (ie%10000000==0) {
-       cout << " " << ((float)ie)*100./((float)nentries)<< "%" << endl;
-       gmap->Write("gmap",TObject::kOverwrite);
-       heta_new->Write("heta",TObject::kOverwrite);
-       //    imgHR1->Write(name3,TObject::kOverwrite);
-     }
-    
-  }
-  gmap->Write("gmap",TObject::kOverwrite);
-  heta_new->Write("heta",TObject::kOverwrite);
-  heta_new->DrawCopy("colz");
-  fout->Close();
-
-}
diff --git a/slsDetectorCalibration/gMapDemo.C b/slsDetectorCalibration/gMapDemo.C
deleted file mode 100644
index 51addf69a..000000000
--- a/slsDetectorCalibration/gMapDemo.C
+++ /dev/null
@@ -1,11 +0,0 @@
-{
-  //.L energyCalibration.cpp+
-  //.L gainMap.C+
-  TFile fin("/data/moench_xbox_20140113/MoTarget_45kV_0_8mA_120V_cds_g4.root");
-  TH2F *h2=fin.Get("h2");
-  TH2F *gMap=gainMap(h2,4);
-  gMap->Draw("colz");
-
-
-
-}
diff --git a/slsDetectorCalibration/gainMap.C b/slsDetectorCalibration/gainMap.C
deleted file mode 100644
index 7923fe687..000000000
--- a/slsDetectorCalibration/gainMap.C
+++ /dev/null
@@ -1,228 +0,0 @@
-#define MYROOT
-#include <TH2F.h>
-#include <TSpectrum.h>
-#include <TH1D.h>
-#include <TFile.h>
-#include <TList.h>
-#include <TPolyMarker.h>
-#include <THStack.h>
-#include <TF1.h>
-#include <TGraphErrors.h>
-#include <iostream>
-#include <energyCalibration.h>
-
-using namespace std;
-
-
-#define FOPT "0"
-
-TH2F *gainMap(TH2F *h2, float g) {
-  //  int npx, npy;
-  int npx=160, npy=160;
-  // det->getDetectorSize(npx, npy);
-
-  TH2F *gMap=new TH2F("gmap",h2->GetTitle(), npx, -0.5, npx-0.5, npy, -0.5, npy-0.5);
-
-  Double_t ens[3]={0,8,17.5}, eens[3]={0.,0.1,0.1};
-  Double_t peaks[3], epeaks[3];
-
-
-
-  int ibin;
-  TH1D *px;
-
-
-  energyCalibration *enCal=new energyCalibration();
-  enCal->setPlotFlag(0);
-  // enCal->setChargeSharing(0);
-  enCal->setScanSign(1);
-
-  Double_t gain, off, egain, eoff;
-
-
-  TList *functions;
-  TPolyMarker *pm ;
-  Double_t *peakX, *peakY;
-  TSpectrum *s=new TSpectrum();
-  Double_t mypar[10], emypar[10];
-  Double_t prms, np;
-  int iit=0;
-  TGraph *glin;
-  Double_t peakdum, hpeakdum;
-
-  for (int ix=1; ix<npx-1; ix++) {
-    for (int iy=1; iy<npy-1; iy++) {
-      // cout << ix << " " << iy << " " << ibin << endl;
-      ibin=ix*npy+iy;
-      px=h2->ProjectionX("px",ibin+1,ibin+1);
-      prms=10*g;
-      iit=0;
-      np=s->Search(px,prms,"",0.2);
-      while (np !=2) {
-	if (np>2)
-	  prms+=0.5*prms;
-	else
-	  prms-=0.5*prms;
-	iit++;
-	if (iit>=10)
-	  break;
-	np=s->Search(px,prms,"",0.2);
-      }
-      if (np!=2)
-	cout << "peak search could not converge " << ibin << endl;
-      if (np==2) {
-	pm=NULL;
-	functions=px->GetListOfFunctions();
-	if (functions)
-	  pm = (TPolyMarker*)functions->FindObject("TPolyMarker");
-	if (pm) {
-	  peakX=pm->GetX();
-	  peakY=pm->GetY();
-
-
-	  if (peakX[0]>peakX[1]) {
-	    peakdum=peakX[0];
-	    hpeakdum=peakY[0];
-	    peakX[0]= peakX[1];
-	    peakY[0]= peakY[1];
-	    peakX[1]= peakdum;
-	    peakY[1]= hpeakdum;
-	    
-	  }
-
-	  cout << "("<< ix << "," << iy << ") "  << endl;
-	  for (int ip=0; ip<np; ip++) {
-	    //  cout << ip << " " << peakX[ip] << " " << peakY[ip] << endl;
-	    
-	    enCal->setFitRange(peakX[ip]-10*g,peakX[ip]+10*g);
-	    mypar[0]=0;
-	    mypar[1]=0;
-	    mypar[2]=peakX[ip];
-	    mypar[3]=g*10;
-	    mypar[4]=peakY[ip];
-	    mypar[5]=0;
-	    
-
-
-	    enCal->setStartParameters(mypar);
-	    enCal->fitSpectrum(px,mypar,emypar);
-
-	    
-	    peaks[ip+1]=mypar[2];
-	    epeaks[ip+1]=emypar[2];
-	  }
-	  
-	  peaks[0]=0;
-	  epeaks[0]=1;
-
-	  //	  for (int i=0; i<3; i++) cout << i << " " << ens[i] << " " << eens[i]<< " "<< peaks[i]<< " " << epeaks[i] << endl;
-
-	  glin= enCal->linearCalibration(3,ens,eens,peaks,epeaks,gain,off,egain,eoff);
-
-	  //  cout << "Gain " << gain << " off " << off << endl;
-	  if (off>-10 && off<10) {
-	    gMap->SetBinContent(ix+1,iy+1,gain);
-	    gMap->SetBinError(ix+1,iy+1,egain);
-	  }
-	  if (glin)
-	    delete glin;
-	}
-      }
-
-
-    }
-  }
-
-  return gMap;
-}
-
-
-TH2F *noiseMap(TH2F *h2) {
-  //  int npx, npy;
-  int npx=160, npy=160;
-  // det->getDetectorSize(npx, npy);
-
-  TH2F *nMap=new TH2F("nmap",h2->GetTitle(), npx, -0.5, npx-0.5, npy, -0.5, npy-0.5);
-
-  int ibin;
-  TH1D *px;
-
-  for (int ix=0; ix<npx; ix++) {
-    for (int iy=0; iy<npy; iy++) {
-      cout << ix << " " << iy << " " << ibin << endl;
-      ibin=ix*npy+iy;
-      px=h2->ProjectionX("px",ibin+1,ibin+1);
-      px->Fit("gaus", FOPT);
-      if (px->GetFunction("gaus")) {
-	nMap->SetBinContent(ix+1,iy+1,px->GetFunction("gaus")->GetParameter(2));
-      }
-      // delete px;
-    }
-  }
-
-  return nMap;
-}
-
-
-THStack *noiseHistos(char *tit) {
-  char fname[10000];
-
-  sprintf(fname,"/data/moench_xbox_20140116/noise_map_%s.root",tit);
-  TFile *fn=new TFile(fname);
-  TH2F *nmap=(TH2F*)fn->Get("nmap");
-
-  if (nmap==NULL) {
-    cout << "No noise map in file " << fname << endl;
-
-    return NULL;
-  }
-
-  sprintf(fname,"/data/moench_xbox_20140113/gain_map_%s.root",tit);
-  TFile *fg=new TFile(fname);
-  TH2F *gmap=(TH2F*)fg->Get("gmap");
-
-  if (gmap==NULL) {
-    cout << "No gain map in file " << fname << endl;
-
-    return NULL;
-  }
-
-  nmap->Divide(gmap);
-  nmap->Scale(1000./3.6);
-
-  THStack *hs=new THStack(tit,tit);
-  hs->SetTitle(tit);
-
-  TH1F *h;
-  char hname[100];
-
-    cout << tit << endl;
-  for (int is=0; is<4; is++) {
-    sprintf(hname,"h%ds",is+1);
-
-    h=new TH1F(hname,tit,500,0,500);
-    hs->Add(h);
-    //  cout << hs->GetHists()->GetEntries() << endl;
-    for (int ix=40*is+2; ix<40*(is+1)-2; ix++) {
-
-      for (int iy=2; iy<158; iy++) {
-	if (ix<100 || ix>120)
-	  h->Fill(nmap->GetBinContent(ix+1,iy+1));
-      }
-    } 
-    cout << is+1 << "SC: " <<  "" << h->GetMean() << "+-" << h->GetRMS();
-    h->Fit("gaus","0Q");
-    h->SetLineColor(is+1);
-    if (h->GetFunction("gaus")) {
-      h->GetFunction("gaus")->SetLineColor(is+1);
-      cout << " or " << h->GetFunction("gaus")->GetParameter(1) << "+-" << h->GetFunction("gaus")->GetParError(1);
-    }
-    cout << endl;
-  }
-
-  //  cout << hs->GetHists()->GetEntries() << endl;
-
-  return hs;
-
-
-}
diff --git a/slsDetectorCalibration/interpolations/.__afs3A48 b/slsDetectorCalibration/interpolations/.__afs3A48
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HcmV?d00001

diff --git a/slsDetectorCalibration/etaVEL/etaInterpolationBase.h b/slsDetectorCalibration/interpolations/etaInterpolationBase.h
similarity index 85%
rename from slsDetectorCalibration/etaVEL/etaInterpolationBase.h
rename to slsDetectorCalibration/interpolations/etaInterpolationBase.h
index 4a3517151..d7fc2f8f3 100644
--- a/slsDetectorCalibration/etaVEL/etaInterpolationBase.h
+++ b/slsDetectorCalibration/interpolations/etaInterpolationBase.h
@@ -29,8 +29,8 @@ class etaInterpolationBase : public slsInterpolation {
 #endif
 #ifndef MYROOT1
     heta=new int[nbeta*nbeta];
-    hhx=new int[nbeta*nbeta];
-    hhy=new int[nbeta*nbeta];
+    hhx=new float[nbeta*nbeta];
+    hhy=new float[nbeta*nbeta];
     
 #endif
     
@@ -51,10 +51,10 @@ class etaInterpolationBase : public slsInterpolation {
 #ifndef MYROOT1
     heta=new int[nbeta*nbeta];
     memcpy(heta,orig->heta,nbeta*nbeta*sizeof(int));
-    hhx=new int[nbeta*nbeta];
-    memcpy(hhx,orig->hhx,nbeta*nbeta*sizeof(int));
-    hhy=new int[nbeta*nbeta];
-    memcpy(hhy,orig->hhy,nbeta*nbeta*sizeof(int));
+    hhx=new float[nbeta*nbeta];
+    memcpy(hhx,orig->hhx,nbeta*nbeta*sizeof(float));
+    hhy=new float[nbeta*nbeta];
+    memcpy(hhy,orig->hhy,nbeta*nbeta*sizeof(float));
     
 #endif
     
@@ -148,7 +148,7 @@ class etaInterpolationBase : public slsInterpolation {
     if (nnx!=nny) {
       cout << "different number of bins in x " << nnx << "  and y " << nny<< " !"<< endl;
       cout << "Aborting read"<< endl;
-      return NULL;
+      return 0;
     }
     nbeta=nnx;
     if (gm) {
@@ -159,8 +159,8 @@ class etaInterpolationBase : public slsInterpolation {
       }
       
       heta=new int[nbeta*nbeta];
-      hhx=new int[nbeta*nbeta];
-      hhy=new int[nbeta*nbeta];
+      hhx=new float[nbeta*nbeta];
+      hhy=new float[nbeta*nbeta];
       
       for (int ix=0; ix<nbeta; ix++) {
 	for (int iy=0; iy<nbeta; iy++) {
@@ -170,7 +170,7 @@ class etaInterpolationBase : public slsInterpolation {
       delete [] gm;
       return 1;
     }
-    return NULL;
+    return 0;
   };
   
     
@@ -199,13 +199,13 @@ TH2D *gethhx()
 #endif
     
 #ifndef MYROOT1
-int *gethhx()
+float *gethhx()
   {
     // hhx->Scale((double)nSubPixels);
     return hhx;
   };
   
-  int *gethhy()
+  float *gethhy()
   {
     // hhy->Scale((double)nSubPixels);
     return hhy;
@@ -224,7 +224,7 @@ int *gethhx()
     corner=calcQuad(data, tot, totquad, sDum); 
     if (nSubPixels>2) 
       calcEta(totquad, sDum, etax, etay); 
-      getInterpolatedPosition(x,y,etax,etay,corner,int_x,int_y);
+    getInterpolatedPosition(x,y,etax,etay,corner,int_x,int_y);
 
     return;
   };
@@ -285,20 +285,25 @@ int *gethhx()
     switch (corner)
       {
       case TOP_LEFT:
-	dX=-.99; 
-	dY=+.99; 
+	dX=-1.;//.99; 
+	dY=0;//+1.;//.99; 
+	//etay=1-etay;
 	break;
       case TOP_RIGHT:
-	dX=+.99; 
-	dY=+.99; 
+	;
+	dX=0;//+1.;//.99; 
+	dY=0;//+1.;//.99; 
 	break;
       case BOTTOM_LEFT:
-	dX=-.99; 
-	dY=-.99; 
+	//etax=1-etax;
+	//etay=1-etay;
+	dX=-1.;//99; 
+	dY=-1.;//.99; 
 	break;
       case BOTTOM_RIGHT:
-	dX=+.99; 
-	dY=-.99; 
+	//etay=1-etay;
+	dX=0;//1.;//+.99; 
+	dY=-1.;//-.99; 
 	break;
       default:
 	cout << "bad quadrant" << endl;
@@ -316,27 +321,47 @@ int *gethhx()
 #ifndef MYROOT1
     ex=(etax-etamin)/etastep;
     ey=(etay-etamin)/etastep;
-    if (ex<0) ex=0;
-    if (ex>=nbeta) ex=nbeta-1;
-    if (ey<0) ey=0;
-    if (ey>=nbeta) ey=nbeta-1;
+    if (ex<0) {
+      ex=0;
+      cout << "x*"<< ex << endl;
+	} 
+    if (ex>=nbeta) {
+      ex=nbeta-1;
+      cout << "x?"<< ex << endl;
+      
+    }
+    if (ey<0) {
+      ey=0;
+      cout << "y*"<< ey << endl;
+	} 
+    if (ey>=nbeta) {
+      ey=nbeta-1;
+      cout << "y?"<< ey << endl;
+      
+    }
+    
     
    
-    xpos_eta=(((double)hhx[(ey*nbeta+ex)]))/((double)nSubPixels);
-    ypos_eta=(((double)hhy[(ey*nbeta+ex)]))/((double)nSubPixels);
-      //else
-      //return 0;
-
+    xpos_eta=(((double)hhx[(ey*nbeta+ex)]))+dX ;///((double)nSubPixels);
+    ypos_eta=(((double)hhy[(ey*nbeta+ex)]))+dY ;///((double)nSubPixels);
+    //else
+    //return 0;
+    
 #endif
      } else {
-       xpos_eta=-dX*0.25;
-       ypos_eta=-0.25*dY;
+       xpos_eta=0.5*dX+0.25;
+       ypos_eta=0.5*dY+0.25;
      }
        
-    int_x=((double)x) + 0.5*dX + xpos_eta;
-    int_y=((double)y) + 0.5*dY + ypos_eta;
-    // cout << "***"<< x <<" " << y << " " << int_x << " " << int_y << endl;
-    //   cout << etax << " " << ex << " " << etay << " " << ey << " " << xpos_eta << " " << int_x << " " << ypos_eta << " " << int_y << endl;
+     //  int_x=((double)x) + 0.5*dX + xpos_eta;
+     //  int_y=((double)y) + 0.5*dY + ypos_eta;
+       int_x=((double)x) + xpos_eta;
+       int_y=((double)y) +  ypos_eta;
+     /*   if (int_x<x-0.5  || int_y<y-0.5 ) { */
+    /* // cout << "***"<< x <<" " << y << " " << int_x << " " << int_y << endl; */
+    /*   cout << corner << " X "<< x <<  " " << etax << " " << xpos_eta << " " << int_x <<" Y "<< y << " " << etay <<  " "  << ypos_eta << " "  <<int_y  <<  endl; */
+    /*   } */
+  
     //return 1;
 
   }
@@ -480,8 +505,8 @@ int *gethhx()
 #endif
 #ifndef MYROOT1
   int *heta;
-  int *hhx;
-  int *hhy;
+  float *hhx;
+  float *hhy;
 #endif
   int nbeta;
   double etamin, etamax, etastep;
diff --git a/slsDetectorCalibration/etaVEL/etaInterpolationGlobal.h b/slsDetectorCalibration/interpolations/etaInterpolationGlobal.h
similarity index 100%
rename from slsDetectorCalibration/etaVEL/etaInterpolationGlobal.h
rename to slsDetectorCalibration/interpolations/etaInterpolationGlobal.h
diff --git a/slsDetectorCalibration/etaVEL/etaInterpolationPosXY.h b/slsDetectorCalibration/interpolations/etaInterpolationPosXY.h
similarity index 73%
rename from slsDetectorCalibration/etaVEL/etaInterpolationPosXY.h
rename to slsDetectorCalibration/interpolations/etaInterpolationPosXY.h
index 8b90a2267..28ffce4eb 100644
--- a/slsDetectorCalibration/etaVEL/etaInterpolationPosXY.h
+++ b/slsDetectorCalibration/interpolations/etaInterpolationPosXY.h
@@ -71,26 +71,48 @@ class etaInterpolationPosXY : public etaInterpolationBase{
      ii=0;
      
      for (int ibx=0; ibx<nbeta; ibx++) {
-       if (hix[ibx]>(ii+1)*tot_eta_x*bsize) ii++;
+       if (tot_eta_x==0) {
+	 hhx[ibx+ib*nbeta]=((float)ibx)/((float)nbeta);
+	 ii=(ibx)/nbeta;
+       } else //if (hix[ibx]>(ii+1)*tot_eta_x*bsize) 
+	 {
+	 //ii++;
+	 // cout << ib << " x " << ibx << " " << tot_eta_x << " " << (ii)*tot_eta_x*bsize << " " << ii << endl;
+	 // }
 #ifdef MYROOT1  
        hhx->SetBinContent(ibx+1,ib+1,ii);
 #endif
 #ifndef MYROOT1  
-       hhx[ibx+ib*nbeta]=ii; 
+       hhx[ibx+ib*nbeta]=hix[ibx]/((float)tot_eta_x);//ii; 
 #endif
+	 }
      }
+     /* if (ii!=(nSubPixels-1)) */
+     /*   cout << ib << " x " <<  tot_eta_x << " " << (ii+1)*tot_eta_x*bsize << " " << ii << " " << hix[nbeta-1]<< endl; */
      
      ii=0;
      
      for (int ibx=0; ibx<nbeta; ibx++) {
-       if (hiy[ibx]>(ii+1)*tot_eta_y*bsize) ii++;
+       if (tot_eta_y==0) {
+	 hhx[ibx+ib*nbeta]=((float)ibx)/((float)nbeta);
+	 ii=(ibx*nSubPixels)/nbeta;
+       } else //if (hiy[ibx]>(ii+1)*tot_eta_y*bsize) 
+	 {
+	   //ii++;
+	 //cout << ib << " y " << ibx << " " << tot_eta_y << " "<< (ii)*tot_eta_y*bsize << " " << ii << endl;
+	   //}
 #ifdef MYROOT1  
        hhy->SetBinContent(ib+1,ibx+1,ii);
 #endif
 #ifndef MYROOT1  
-       hhy[ib+ibx*nbeta]=ii; 
+       hhy[ib+ibx*nbeta]=hiy[ibx]/((float)tot_eta_y);//ii; 
 #endif
+	 }
      }
+     /* if (ii!=(nSubPixels-1)) */
+     /*   cout << ib << " y " <<  tot_eta_y << " " << (ii+1)*tot_eta_y*bsize << " " << ii << " " << hiy[nbeta-1]<< endl; */
+     
+     //	 cout << "y " << nbeta << " " << (ii+1)*tot_eta_x*bsize << " " << ii << endl;
      
 
 
diff --git a/slsDetectorCalibration/etaVEL/EVELAlg.C b/slsDetectorCalibration/interpolations/etaVEL/EVELAlg.C
similarity index 100%
rename from slsDetectorCalibration/etaVEL/EVELAlg.C
rename to slsDetectorCalibration/interpolations/etaVEL/EVELAlg.C
diff --git a/slsDetectorCalibration/etaVEL/EtaVEL.cpp b/slsDetectorCalibration/interpolations/etaVEL/EtaVEL.cpp
similarity index 100%
rename from slsDetectorCalibration/etaVEL/EtaVEL.cpp
rename to slsDetectorCalibration/interpolations/etaVEL/EtaVEL.cpp
diff --git a/slsDetectorCalibration/etaVEL/EtaVEL.h b/slsDetectorCalibration/interpolations/etaVEL/EtaVEL.h
similarity index 100%
rename from slsDetectorCalibration/etaVEL/EtaVEL.h
rename to slsDetectorCalibration/interpolations/etaVEL/EtaVEL.h
diff --git a/slsDetectorCalibration/etaVEL/EtaVELTr.py b/slsDetectorCalibration/interpolations/etaVEL/EtaVELTr.py
similarity index 100%
rename from slsDetectorCalibration/etaVEL/EtaVELTr.py
rename to slsDetectorCalibration/interpolations/etaVEL/EtaVELTr.py
diff --git a/slsDetectorCalibration/etaVEL/interpolation_etaVEL.cpp b/slsDetectorCalibration/interpolations/etaVEL/interpolation_etaVEL.cpp
similarity index 100%
rename from slsDetectorCalibration/etaVEL/interpolation_etaVEL.cpp
rename to slsDetectorCalibration/interpolations/etaVEL/interpolation_etaVEL.cpp
diff --git a/slsDetectorCalibration/etaVEL/interpolation_EtaVEL.h b/slsDetectorCalibration/interpolations/interpolation_EtaVEL.h
similarity index 100%
rename from slsDetectorCalibration/etaVEL/interpolation_EtaVEL.h
rename to slsDetectorCalibration/interpolations/interpolation_EtaVEL.h
diff --git a/slsDetectorCalibration/etaVEL/linearInterpolation.h b/slsDetectorCalibration/interpolations/linearInterpolation.h
similarity index 96%
rename from slsDetectorCalibration/etaVEL/linearInterpolation.h
rename to slsDetectorCalibration/interpolations/linearInterpolation.h
index ae7f52e3a..1625e8651 100644
--- a/slsDetectorCalibration/etaVEL/linearInterpolation.h
+++ b/slsDetectorCalibration/interpolations/linearInterpolation.h
@@ -98,18 +98,18 @@ class linearInterpolation : public slsInterpolation{
       {
       case TOP_LEFT:
 	dX=-1.; 
-	dY=+1.; 
+	dY=0; 
 	break;
       case TOP_RIGHT:
-	dX=+1.; 
-	dY=+1.; 
+	dX=0; 
+	dY=0; 
 	break;
       case BOTTOM_LEFT:
 	dX=-1.; 
 	dY=-1.; 
 	break;
       case BOTTOM_RIGHT:
-	dX=+1.; 
+	dX=0; 
 	dY=-1.; 
 	break;
       default:
@@ -125,8 +125,8 @@ class linearInterpolation : public slsInterpolation{
       xpos_eta=0;
       xpos_eta=0;
     }
-    int_x=((double)x) + 0.5*dX + xpos_eta;
-    int_y=((double)y) + 0.5*dY + ypos_eta;
+    int_x=((double)x) + dX + xpos_eta;
+    int_y=((double)y) + dY + ypos_eta;
     
     return;
   };
diff --git a/slsDetectorCalibration/etaVEL/noInterpolation.h b/slsDetectorCalibration/interpolations/noInterpolation.h
similarity index 90%
rename from slsDetectorCalibration/etaVEL/noInterpolation.h
rename to slsDetectorCalibration/interpolations/noInterpolation.h
index 3f47d6c71..c5036a9f4 100644
--- a/slsDetectorCalibration/etaVEL/noInterpolation.h
+++ b/slsDetectorCalibration/interpolations/noInterpolation.h
@@ -40,11 +40,11 @@ class noInterpolation : public slsInterpolation{
   };
   virtual void getInterpolatedPosition(int x, int y, double etax, double etay, int corner, double &int_x, double &int_y)
   {
-    return getInterpolatedPosition(x, y, NULL, int_x, int_y);
+    getInterpolatedPosition(x, y, NULL, int_x, int_y);
+  };
+  virtual void getInterpolatedPosition(int x, int y, double totquad,int quad,double *cl,double &etax, double &etay){
+    getInterpolatedPosition(x, y, NULL, etax, etay);
   };
-  virtual int getInterpolatedPosition(int x, int y, double totquad,int quad,double *cl,double &etax, double &etay){
-    return getInterpolatedPosition(x, y, NULL, int_x, int_y);
-  }
   
   //////////////////////////////////////////////////////////////////////////////////////
   virtual void getPositionETA3(int x, int y, double *data, double &int_x, double &int_y)
diff --git a/slsDetectorCalibration/etaVEL/slsInterpolation.h b/slsDetectorCalibration/interpolations/slsInterpolation.h
similarity index 98%
rename from slsDetectorCalibration/etaVEL/slsInterpolation.h
rename to slsDetectorCalibration/interpolations/slsInterpolation.h
index 506bc1ae5..559f33597 100644
--- a/slsDetectorCalibration/etaVEL/slsInterpolation.h
+++ b/slsDetectorCalibration/interpolations/slsInterpolation.h
@@ -7,6 +7,7 @@
 #include <TH2F.h>
 #endif
 
+#include <cstdlib> 
 #include "tiffIO.h"
 #ifndef DEF_QUAD
 #define DEF_QUAD
@@ -18,7 +19,9 @@
     UNDEFINED_QUADRANT=-1
   };
 #endif
+#include <memory.h>
 
+using namespace std;
 //#ifdef MYROOT1
 //: public TObject
 //#endif
@@ -136,7 +139,7 @@ hint=new TH2F("hint","hint",ns*nx, 0, nx, ns*ny, 0, ny);
 
 #ifndef MYROOT1
   virtual int *addToImage(double int_x, double int_y){ int iy=nSubPixels*int_y; int ix=nSubPixels*int_x; 
-    //       cout << int_x << " " << int_y << " " << "  " << ix << " " << iy << " " << ix+iy*nPixelsX*nSubPixels << endl;
+    // cout << int_x << " " << int_y << " " << "  " << ix << " " << iy << " " << ix+iy*nPixelsX*nSubPixels << endl;
     if (ix>=0 && ix<(nPixelsX*nSubPixels) && iy<(nSubPixels*nPixelsY) && iy>=0 )(*(hint+ix+iy*nPixelsX*nSubPixels))+=1; 
     return hint;
   };
diff --git a/slsDetectorCalibration/jungfrauReadData.C b/slsDetectorCalibration/jungfrauReadData.C
deleted file mode 100644
index 743a88e70..000000000
--- a/slsDetectorCalibration/jungfrauReadData.C
+++ /dev/null
@@ -1,264 +0,0 @@
-#include <TH1D.h>
-#include <TH2D.h>
-#include <TPad.h>
-#include <TDirectory.h>
-#include <TEntryList.h>
-#include <TFile.h>
-#include <TMath.h>
-#include <TTree.h>
-#include <TChain.h>
-#include <THStack.h>
-#include <TCanvas.h>
-#include <stdio.h>
-//#include <deque>
-//#include <list>
-//#include <queue>
-#include <fstream>
-#include "jungfrau02Data.h"
-#include "jungfrau02CommonMode.h"
-#include "singlePhotonDetector.h"
-
-//#include "MovingStat.h"
-
-using namespace std;
-
-#define NC 48
-#define NR 48
-
-
-#define MY_DEBUG 1
-#ifdef MY_DEBUG
-#include <TCanvas.h>
-#endif
-
-/**
-
-Loops over data file to find single photons, fills the tree (and writes it to file, although the root file should be opened before) and creates 1x1, 2x2, 3x3 cluster histograms with ADCu on the x axis, channel number (48*x+y) on the y axis.
-
-  \param fformat file name format
-  \param tit title of the tree etc.
-  \param runmin minimum run number
-  \param runmax max run number
-  \param nbins  number of bins for spectrum hists
-  \param hmin histo minimum for spectrum hists
-  \param hmax histo maximum for spectrum hists
-  \param sign sign of the spectrum to find hits
-  \param hc readout correlation coefficient with previous pixel
-  \param xmin minimum x coordinate
-  \param xmax maximum x coordinate
-  \param ymin minimum y coordinate
-  \param ymax maximum y coordinate
-  \param cmsub  enable commonmode subtraction 
-  \param hitfinder if 0: performs pedestal subtraction, not hit finding; if 1: performs both pedestal subtraction and hit finding
-  \returns pointer to histo stack with cluster spectra
-*/
-
-
-THStack *jungfrauReadData(char *fformat, char *tit, int runmin, int runmax, int nbins=1500, int hmin=-500, int hmax=1000, int sign=1, double hc=0, int xmin=1, int xmax=NC-1, int ymin=1, int ymax=NR-1, int cmsub=0, int hitfinder=1){
-/*
-  // read in calibration file
-  ifstream calfile("/home/l_msdetect/TriesteBeam2014/dummy data for scripts/CalibrationParametersTest_fake.txt");
-  if (calfile.is_open()==0){cout << "Unable to open calibration file!" << endl;}
-  int pix;
-  double of0,sl0,of1,sl1,of2,sl2;
-  double of_0[NC*NR], of_1[NC*NR], of_2[NC*NR], sl_0[NC*NR], sl_1[NC*NR], sl_2[NC*NR];
-  while (calfile >> pix >> of0 >> sl0 >> of1 >> sl1 >> of2 >> sl2){ 
-    	of_0[pix]=of0;
-    	sl_0[pix]=sl0;
-    	of_1[pix]=of1;
-    	sl_1[pix]=sl1;
-    	of_2[pix]=of2;
-    	sl_2[pix]=sl2; //if(pix==200) cout << "sl_2[200] " << sl_2[200] << endl;
-  }
-  calfile.close();
-*/  
-  double adc_value, num_photon;
-
-  jungfrau02Data *decoder=new jungfrau02Data(1,0,0);//(1,0,0); // (adc,offset,crosstalk) //(1,0,0) //(3,0,0) for readout of GB
-  jungfrau02CommonMode *cmSub=NULL;
-   if (cmsub)
-     cmSub=new jungfrau02CommonMode();
-
-  int nph=0;
-  int iev=0;
-  singlePhotonDetector<uint16_t> *filter=new singlePhotonDetector<uint16_t>(decoder, 3, 5, sign, cmSub);
-
-  char *buff;
-  char fname[10000];
-  int nf=0;
-  
-  eventType thisEvent=PEDESTAL;
-
-  // int iframe;
-  // double *data, ped, sigma;
-
-  // data=decoder->getCluster();
-
-  TH2F *h2;
-  TH2F *h3;
-  TH2F *hetaX; // not needed for JF?
-  TH2F *hetaY; // not needed for JF?
-
-  THStack *hs=new THStack("hs",fformat);
-
-
-  TH2F *h1=new TH2F("h1",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-  hs->Add(h1);
-
-  if (hitfinder) {
-    h2=new TH2F("h2",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-    h3=new TH2F("h3",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-    hetaX=new TH2F("hetaX",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5); // not needed for JF?
-    hetaY=new TH2F("hetaY",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5); // not needed for JF?
-    hs->Add(h2);
-    hs->Add(h3);
-    hs->Add(hetaX); // not needed for JF?
-    hs->Add(hetaY); // not needed for JF?
-  }
-
-  
-  ifstream filebin;
-
-
-  int ix=20, iy=20, ir, ic;
-
-
-  Int_t iFrame;
-  TTree *tall;
-  if (hitfinder)
-    tall=filter->initEventTree(tit, &iFrame);
-
-
-  
-
-#ifdef MY_DEBUG
-  
-  TCanvas *myC;
-  TH2F *he;
-  TCanvas *cH1;
-  TCanvas *cH2;
-  TCanvas *cH3;
-
-  if (hitfinder) {
-    myC=new TCanvas();
-    he=new TH2F("he","Event Mask",xmax-xmin, xmin, xmax, ymax-ymin, ymin, ymax);
-    he->SetStats(kFALSE);
-    he->Draw("colz");
-    cH1=new TCanvas();
-    cH1->SetLogz();
-    h1->Draw("colz");
-    cH2=new TCanvas();
-    cH2->SetLogz();
-    h2->Draw("colz");
-    cH3=new TCanvas();
-    cH3->SetLogz();
-    h3->Draw("colz");
-  }
-#endif
-  filter->newDataSet();
-
-
-  for (int irun=runmin; irun<=runmax; irun++){ 
-    sprintf(fname,fformat,irun);
-    cout << "file name " << fname << endl;
-    filebin.open((const char *)(fname), ios::in | ios::binary);
-    nph=0;
-    while ((buff=decoder->readNextFrame(filebin))) {
-      
-
-      if (hitfinder) {
-	filter->newFrame();
-
-	//calculate pedestals and common modes
-	if (cmsub) {
-	//	cout << "cm" << endl;
-	  for (ix=xmin-1; ix<xmax+1; ix++)
-	    for (iy=ymin-1; iy<ymax+1; iy++) {
-	      thisEvent=filter->getEventType(buff, ix, iy,0);
-	    }
-	}
-      }
-
-      //   cout << "new frame " << endl;
-
-      for (ix=xmin-1; ix<xmax+1; ix++)
-	for (iy=ymin-1; iy<ymax+1; iy++) {
-	  //	  cout << ix << " " << iy << endl;
-	
-
-
-	  thisEvent=filter->getEventType(buff, ix, iy, cmsub);
-	  int gainBits=decoder->getGainBits(buff,ix,iy); //XXX
-
-#ifdef MY_DEBUG
-	  if (hitfinder) {
-	    if (iev%1000==0)
-	     //he->SetBinContent(ix+1-xmin, iy+1-ymin, (int)thisEvent); // show single photon hits // original
-	     //he->SetBinContent(ix+1-xmin, iy+1-ymin, cmSub->getCommonMode(ix,iy)); //show common mode!
- 	     he->SetBinContent(iy+1-ymin, ix+1-xmin, (int)gainBits); //show gain bits   
-             //he->SetBinContent(ix+1-xmin, iy+1-ymin, (int)gainBits); // rows and columns reversed!!! 
-	  }
-#endif	  
-	  
-	  if (nf>1000) { // only start filing data after 1000 frames
-
-	    //   h1->Fill(decoder->getValue(buff,ix,iy), iy+NR*ix);
-	    h1->Fill(filter->getClusterTotal(1), iy+NR*ix);
-
-
-	    if (hitfinder) {
-	      
-	      if (thisEvent==PHOTON_MAX ) {
-		nph++;
-
-		h2->Fill(filter->getClusterTotal(2), iy+NR*ix);
-		h3->Fill(filter->getClusterTotal(3), iy+NR*ix);
-		iFrame=decoder->getFrameNumber(buff);
-
-		tall->Fill();
-	   
-       
-	      }
-	  
-	    
-	    }
-	    
-
-	  }
-	}
-	  //////////////////////////////////////////////////////////
-    
-#ifdef MY_DEBUG
-      if (iev%1000==0) {
-	myC->Modified();
-	myC->Update();
-	cH1->Modified();
-	cH1->Update();
-	cH2->Modified();
-	cH2->Update();
-	cH3->Modified();
-	cH3->Update();
-      }
-      iev++;
-#endif		    
-      nf++;
-
-      cout << "="; // one "=" for every frame that's been processed
-      delete [] buff;
-    }
-    cout << nph << endl; // number of photons found in file
-    if (filebin.is_open())
-    filebin.close();	  
-    else
-      cout << "Could not open file :( ... " << fname << endl;
-  } 
-  if (hitfinder)
-    tall->Write(tall->GetName(),TObject::kOverwrite);
-  
-    
-  
-  delete decoder;
-  cout << "Read " << nf << " frames." << endl;
-  return hs;
-}
-  
diff --git a/slsDetectorCalibration/makefile b/slsDetectorCalibration/makefile
deleted file mode 100644
index dfd27b609..000000000
--- a/slsDetectorCalibration/makefile
+++ /dev/null
@@ -1,10 +0,0 @@
-CC=gcc
-CFLAGS=  -g -c -W  -lstdc++
-
-ROOTINCLUDE=$(ROOTSYS)/include
-
-energyCalibration.o: energyCalibration.cpp
-	$(CC) $(CFLAGS) energyCalibration.cpp -I $(ROOTINCLUDE) 
-
-clean:
-	rm -f energyCalibration.o
\ No newline at end of file
diff --git a/slsDetectorCalibration/moench03ReadData.C b/slsDetectorCalibration/moench03ReadData.C
deleted file mode 100644
index 0235231c2..000000000
--- a/slsDetectorCalibration/moench03ReadData.C
+++ /dev/null
@@ -1,1117 +0,0 @@
-#include <TH1D.h>
-#include <TH2D.h>
-#include <TPad.h>
-#include <TDirectory.h>
-#include <TEntryList.h>
-#include <TFile.h>
-#include <TMath.h>
-#include <TTree.h>
-#include <TChain.h>
-#include <THStack.h>
-#include <TCanvas.h>
-#include <TF1.h>
-#include <stdio.h>
-//#include <deque>
-//#include <list>
-//#include <queue>
-#include <map>
-#include <fstream>
-#include <sys/stat.h>
-#include "moench03CtbData.h"
-#include "moench03CommonMode.h"
-#define MYROOT1
-#include "singlePhotonDetector.h"
-
-//#include "MovingStat.h"
-
-using namespace std;
-
-#define NC 400
-#define NR 400
-
-
-#define MY_DEBUG 1
-
-#ifdef MY_DEBUG
-#include <TCanvas.h>
-#endif
-
-
-
-TH2F *readImage(ifstream &filebin,   TH2F *h2=NULL, TH2F *hped=NULL) {
-  moench03CtbData *decoder=new moench03CtbData();
-  char *buff=decoder->readNextFrame(filebin);
-  
-
-//   TH1F *h1=new TH1F("h1","",400*400,0,400*400);
-//   int ip=0;
-  if (buff) {
-    if (h2==NULL) {
-      h2=new TH2F("h2","",400,0,400,400,0,400);
-      h2->SetStats(kFALSE);
-    }
-    cout << "." << endl;
-    for (int ix=0; ix<400; ix++) {
-      for (int iy=0; iy<400; iy++) {
-	//	cout <<  decoder->getDataSize() << " " << decoder->getValue(buff,ix,iy)<< endl;
-	h2->SetBinContent(ix+1,iy+1,decoder->getValue(buff,ix,iy));
-	//	h1->SetBinContent(++ip,decoder->getValue(buff,ix,iy));
-      }
-    }
-    if (hped) h2->Add(hped,-1);
-    return h2;
-  }
-  return NULL;
-}
-
-
-TH2F *readImage(char *fname, int iframe=0, TH2F *hped=NULL) {
-  ifstream filebin;
-  filebin.open((const char *)(fname), ios::in | ios::binary);
-  TH2F *h2=new TH2F("h2","",400,0,400,400,0,400);
-  TH2F *hh;
-  hh=readImage(filebin, h2, hped );
-  if (hh==NULL) {
-
-    delete h2;
-    return NULL;
-  }
-  for (int i=0; i<iframe; i++) {
-    if (hh==NULL) break;
-    hh=readImage(filebin, h2, hped );
-    if (hh)
-      cout << "="<< endl;
-    else {
-      delete h2;
-      return NULL;
-    }
-  }
-  if (filebin.is_open())
-    filebin.close();
-  if (hped!=NULL)
-    h2->Add(hped,-1);
-
-  return h2;
-}
-
-
-TH2F *calcPedestal(char *fformat, int runmin, int runmax){
-  ifstream filebin;
-  char fname[10000];
-  moench03CtbData *decoder=new moench03CtbData();
-  singlePhotonDetector<uint16_t> *filter=new singlePhotonDetector<uint16_t>(decoder, 3, 5, 1, NULL);
-  char *buff;
-  int ix,iy;
-  int ii=0;
-  TH2F* h2=NULL;
-
-  for (int irun=runmin; irun<=runmax; irun++) {
-    sprintf(fname,fformat,irun);
-    
-
-    filebin.open((const char *)(fname), ios::in | ios::binary);
-    while ((buff=decoder->readNextFrame(filebin))) {
-      for (ix=0; ix<400; ix++) {
-	for (iy=0; iy<400; iy++) {
-	  filter->addToPedestal(decoder->getValue(buff,ix,iy), ix, iy);
-	}
-      }
-      delete [] buff;
-      cout << "="<< endl;
-      ii++;
-    }
-    if (filebin.is_open())
-      filebin.close(); 
-    
-  }
-  if (ii>0) {
-    h2=new TH2F("hped","",400,0,400,400,0,400);
-    
-      for (ix=0; ix<400; ix++) {
-	for (iy=0; iy<400; iy++) {
-	  h2->SetBinContent(ix+1, iy+1,filter->getPedestal(ix,iy));
-	}
-      }
-
-  }
-  return h2;
-
-}
-/******************************************************************************/
-TH2F * calcNoiseRMS(char *fformat, int runmin, int runmax){
-  ifstream filebin;
-  char fname[10000];
-  moench03CtbData *decoder=new moench03CtbData();
-  singlePhotonDetector<uint16_t> *filter=new singlePhotonDetector<uint16_t>(decoder, 3, 5, 1, NULL);
-  char *buff;
-  int ix,iy;
-  int ii=0;
-  TH2F* h2=NULL;
-
-  for (int irun=runmin; irun<=runmax; irun++) {
-    sprintf(fname,fformat,irun);
-    
-
-    filebin.open((const char *)(fname), ios::in | ios::binary);
-    while ((buff=decoder->readNextFrame(filebin))) {
-      for (ix=0; ix<400; ix++) {
-	for (iy=0; iy<400; iy++) {
-	  filter->addToPedestal(decoder->getValue(buff,ix,iy), ix, iy);
-	}
-      }
-      delete [] buff;
-      cout << "="<< endl;
-      ii++;
-    }
-    if (filebin.is_open())
-      filebin.close(); 
-    
-  }
-  if (ii>0) {
-    h2=new TH2F("hped","",400,0,400,400,0,400);
-    
-      for (ix=0; ix<400; ix++) {
-	for (iy=0; iy<400; iy++) {
-	  h2->SetBinContent(ix+1, iy+1,filter->getPedestalRMS(ix,iy));
-	}
-      }
-
-  }
-  return h2;
-
-}
-
-/**********************************************************************************/
-THStack * calcNoise(char *fformat,std::string flag, int runmin, int runmax, int nfiles){
-  std::map<int,TH1F *> pixelMap;
-  cerr<<"Creating pedestal map for frames: "<<flag<<endl;
-  cerr<<"/***************************************/"<<endl;
-
-
-  THStack * hs = new THStack();
-
-  int n(2);
-  int r(0);
-
-  if(flag=="even"){
-    n=2;
-    r=0;
-  }else if(flag=="odd"){
-    n=2;
-    r=1;
-  }else if(flag=="all"){
-    n=1;
-    r=0;
-  }
-
-  ifstream filebin;
-  char fname[10000];
-  moench03CtbData *decoder=new moench03CtbData();
-  singlePhotonDetector<uint16_t> *filter=new singlePhotonDetector<uint16_t>(decoder, 3, 5, 1, NULL);
-  char *buff;
-  int ix,iy;
-  int ii=0;
-  TH2F* hped=NULL;
-  TH2F* hnoise=NULL;
-  int ibin(0);
-  int iframe(0);
-  Float_t sigma(0.);
-  int filefound(0);
-  pixelMap.clear();
-  for (int irun=runmin; irun<=runmax; irun++) {
-    sprintf(fname,fformat,irun);
-    if( access(fname,F_OK) != -1){
-      if(filefound<nfiles){
-	filebin.open((const char *)(fname), ios::in | ios::binary);
-	while ((buff=decoder->readNextFrame(filebin))) {
-	  iframe=decoder->getFrameNumber(buff);
-	  if(iframe%n==r){
-	    for (ix=0; ix<400; ix++) {
-	      for (iy=0; iy<400; iy++) {
-		ibin = ix*NR+iy;
-		if(pixelMap.find(ibin)!=pixelMap.end()){
-		  pixelMap[ibin]->Fill(decoder->getValue(buff,ix,iy));
-		}else{
-		  pixelMap[ibin] = new TH1F(Form("h_%d",ibin),Form("h_%d",ibin),8000,-0.5,15999.5);
-		}
-	      }
-	    }
-	  }
-	  delete [] buff;
-	  if(ii%1000==0)cout << "="<<ii<< endl;
-	  ii++;
-	}
-	if (filebin.is_open())
-	  filebin.close(); 
-	filefound++;
-      }else{
-	break;
-      }
-    }else{//end chek if file exists
-      cerr<<fname<<" does not exist!"<<endl;
-    }
-    
-  }
-  if(ii>0){
-
-    hped=new TH2F("hped","",400,-0.5,399.5,400,-0.5,399.5);
-    hnoise=new TH2F("hnoise","",400,-0.5,399.5,400,-0.5,399.5);
-    hs->Add(hped);
-    hs->Add(hnoise);
-    Float_t p(0.);
-    Float_t perr(0.);
-    Float_t amp(0.);
-    Float_t sigmaerr(0.);
-    for(ix=0; ix<400; ix++){
-      for (iy=0; iy<400; iy++){
-	sigma=0.;
-	sigmaerr=0.;
-	p=0.;
-	perr=0.;
-	ibin = ix*NR+iy;
-	if(ibin%1000==0)cerr<<ibin<<endl;
-	if(pixelMap.find(ibin)!=pixelMap.end()){
-	  // cerr<<"/****************/"<<endl;
-	  // cerr<<"("<<ix<<","<<iy<<")"<<endl;
-	  p=pixelMap[ibin]->GetBinCenter(pixelMap[ibin]->GetMaximumBin());
-	  // cerr<<"peak: "<<p<<endl;
-	  amp=pixelMap[ibin]->GetBinContent(pixelMap[ibin]->GetMaximumBin());
-	  sigma=pixelMap[ibin]->GetRMS();
-
-	  TF1 * g = new TF1("g","gaus(0)",p-sigma,p+sigma);
-	  g->SetParameters(amp,p,sigma);
-	  g->SetParLimits(1,p-sigma,p+sigma);
-	  g->SetParLimits(2,0.1*sigma,2.*sigma);
-
-	  pixelMap[ibin]->Fit(g,"RQN0");
-	  p=g->GetParameter(1);
-	  perr=g->GetParError(1);
-	  sigma=g->GetParameter(2);
-	  sigmaerr=g->GetParError(2);
-	  // cerr<<"sigma: "<<sigma<<endl;
-	  delete g;
-	  delete pixelMap[ibin];
-
-	}
-	hped->SetBinContent(ix+1,iy+1,p);
-	hped->SetBinError(ix+1,iy+1,perr);
-	hnoise->SetBinContent(ix+1,iy+1,sigma);
-	hnoise->SetBinError(ix+1,iy+1,sigmaerr);
-
-      }
-    }
-
-  }
-
-  return hs;
-
-}
-/****************************************************/
-THStack * DrawFrames(char *fformat,int framemin, int framemax){
-
-  int nbins(400);
-  int xmin(0);
-  int xmax(400);
-
-  THStack * hs = new THStack();
-  ifstream filebin;
-  char fname[10000];
-  moench03CtbData *decoder=new moench03CtbData();
-  char *buff;
-  int ix,iy;
-  int iframe(0);
-  if(access(fformat,F_OK) != -1){
-    filebin.open((const char *)(fformat), ios::in | ios::binary);
-    while ((buff=decoder->readNextFrame(filebin))) {
-      iframe=decoder->getFrameNumber(buff);
-      if(iframe>=framemin && iframe<framemax){//check on frames
-	ix=0;
-	iy=0;
-	TH2F * h = new TH2F(Form("h_%d",iframe),Form("h_%d",iframe),nbins,xmin,xmax,nbins,xmin,xmax);
-	for(ix=xmin; ix<xmax; ix++){//loop on pixels
-	  for(iy=xmin; iy<xmax; iy++){
-	    h->SetBinContent(ix+1,iy+1,decoder->getValue(buff,ix,iy));
-	  }
-	}//end loop on pixels
-	hs->Add(h);
-      }//end check on frames
-      delete [] buff;
-    }
-  }else{//check if file exists
-    cerr<<fformat<<" does not exists!"<<endl;
-  }
-
-  return hs;
-}
-/****************************************************/
-TH1F * SinglePixelHisto(char *fformat,int nbins, float xmin, float xmax, int runmin, int runmax, int x0, int y0){
-  moench03CtbData *decoder=new moench03CtbData();
-  cout << "decoder allocated " << endl;
-
-  TH1F * _hout = new TH1F("hpix","",nbins,xmin,xmax);
-
-  char *buff;
-  char fname[10000];
-  ifstream filebin;
-  int iframe(0);
-  for (int irun=runmin; irun<=runmax; irun++){//loop on files
-    sprintf(fname,fformat,irun);
-    iframe=0;
-    if( access(fname,F_OK) != -1){//check if file exists
-      filebin.open((const char *)(fname), ios::in | ios::binary);
-      while ((buff=decoder->readNextFrame(filebin))){
-	iframe=decoder->getFrameNumber(buff);
-	if(iframe%1000==0) cerr<<iframe<<" frames"<<endl;
-	_hout->Fill(decoder->getValue(buff,x0,y0));
-	delete [] buff;
-
-      }//end readout of frame
-    }else{//end check on file
-      cerr<<fname<<" does not exists!"<<endl;
-    }
-    if(filebin.is_open()) filebin.close();
-  }//end loop on files
-
-  return _hout;
-
-
-}
-/****************************************************/
-void DrawAllPixelCorrelation(char *fformat, std::string frame,int runmin, int runmax, int xmin, int xmax, int ymin, int ymax, int sc_width,TH2F* hcorr){
-  int cmsub(0);
-  moench03CtbData *decoder=new moench03CtbData();
-  cout << "decoder allocated " << endl;
-
-  moench03CommonMode *cmSub=NULL;
-  if (cmsub) {
-    cmSub=new moench03CommonMode(100);
-    cout << "common mode allocated " << endl;
-
-  } else {
-     
-    cout << "non allocating common mode  " << endl;
-  }
-
-  int n(2);
-  int r(0);
-  if(frame=="even"){
-    n=2;
-    r=0;
-  }else if(frame=="odd"){
-    n=2;
-    r=1;
-  }else if(frame=="all"){
-    n=1;
-    r=0;
-  }
-  int sign(1);
-  singlePhotonDetector<uint16_t> *filter=new singlePhotonDetector<uint16_t>(decoder, 3, 5, sign, cmSub, 1000, 100);
-  char *buff;
-  char fname[10000];
-
-  float pix1(0.);
-  float pix2(0.);
-  ifstream filebin;
-  int iframe(0);
-
-  for (int irun=runmin; irun<=runmax; irun++){//loop on files
-    sprintf(fname,fformat,irun);
-    iframe=0;
-    pix1=0.;
-    pix2=0.;
-    if( access(fname,F_OK) != -1){//check if file exists
-      filebin.open((const char *)(fname), ios::in | ios::binary);
-      while ((buff=decoder->readNextFrame(filebin))){//loop on frames
-	iframe=decoder->getFrameNumber(buff);
-	if(iframe%n==r){//check if frame is even or odd
-	  for(int ix=xmin; ix<xmax; ix++){//loop on pixels
-	    for(int iy=ymin; iy<ymax; iy++){
-
-	    
-	      if((ix+1)%sc_width != 0){//check that pixel is not at the edge of supercolumn
-
-		pix1=decoder->getValue(buff,ix,iy);
-		pix2=decoder->getValue(buff,ix+1,iy);
-
-		hcorr->Fill(pix1,pix2);
-	      }//end check on s_c edge
-
-	    }
-	  }//end loop on pixels
-	}//edn check on frame number
-	delete [] buff;
-
-      }//end loop on frames
-
-    }else{//end check if file exists
-      cerr<<fname<<" does not exist!"<<endl;
-    }
-    if(filebin.is_open())filebin.close();
-  }//end loop on files
-  
-
-  return;
-
-
-}
-/***************************************************/
-void DrawPixelCorrelation(char *fformat, std::string frame,int runmin, int runmax, int px, int py,TH1F * h1,TH1F * h2, TH2F * hcorr){
-  int cmsub(0);
-  moench03CtbData *decoder=new moench03CtbData();
-  cout << "decoder allocated " << endl;
-
-  moench03CommonMode *cmSub=NULL;
-  if (cmsub) {
-    cmSub=new moench03CommonMode(100);
-    cout << "common mode allocated " << endl;
-
-  } else {
-     
-    cout << "non allocating common mode  " << endl;
-  }
-
-  int n(2);
-  int r(0);
-  if(frame=="even"){
-    n=2;
-    r=0;
-  }else if(frame=="odd"){
-    n=2;
-    r=1;
-  }else if(frame=="all"){
-    n=1;
-    r=0;
-  }
-
-
-  int sign(1);
-  singlePhotonDetector<uint16_t> *filter=new singlePhotonDetector<uint16_t>(decoder, 3, 5, sign, cmSub, 1000, 100);
-  char *buff;
-  char fname[10000];
-
-  float pix1(0.);
-  float pix2(0.);
-  ifstream filebin;
-  int ii=0;
-  int iframe(0);
-
-  for (int irun=runmin; irun<=runmax; irun++){//loop on files
-    sprintf(fname,fformat,irun);
-    pix1=0.;
-    pix2=0.;
-    iframe=0;
-    if( access(fname,F_OK) != -1){//check if file exists
-
-      filebin.open((const char *)(fname), ios::in | ios::binary);
-      while ((buff=decoder->readNextFrame(filebin))){//loop on frames
-	iframe=decoder->getFrameNumber(buff);
-	if(iframe%n==r){
-	
-
-	  pix1=decoder->getValue(buff,px,py);
-	  pix2=decoder->getValue(buff,px+1,py);
-
-	  h1->Fill(pix1);
-	  h2->Fill(pix2);
-	  hcorr->Fill(pix1,pix2);
-	  delete [] buff;
-
-	}
-	if(ii%1000==0)cerr<<"reading frame "<<ii<<endl;
-	ii++;
-      }//end loop on frames
-      if(filebin.is_open())filebin.close();
-
-    }else{//end check on file
-      cerr<<fname<<" does not exists!"<<endl;
-    }
-    if(filebin.is_open())filebin.close();
-  }//end loop on files
-
-  return;
-
-}
-/**
-
-Loops over data file to find single photons, fills the tree (and writes it to file, althoug the root file should be opened before) and creates 1x1, 2x2, 3x3 cluster histograms with ADCu on the x axis, channel number (160*x+y) on the y axis.
-
-  \param fformat file name format
-  \param tit title of the tree etc.
-  \param runmin minimum run number
-  \param runmax max run number
-  \param nbins  number of bins for spectrum hists
-  \param hmin histo minimum for spectrum hists
-  \param hmax histo maximum for spectrum hists
-  \param sign sign of the spectrum to find hits
-  \param hc readout correlation coefficient with previous pixel
-  \param xmin minimum x coordinate
-  \param xmax maximum x coordinate
-  \param ymin minimum y coordinate
-  \param ymax maximum y coordinate
-  \param cmsub  enable commonmode subtraction
-  \returns pointer to histo stack with cluster spectra
-*/
-
-THStack *moench03ReadData(char *fformat, char *tit, int runmin, int runmax, int nbins=1500, int hmin=-500, int hmax=1000, int xmin=1, int xmax=NC-1, int ymin=1, int ymax=NR-1, int cmsub=0, int hitfinder=1) {
-  
-  double hc(0);
-  int sign(1);
-  moench03CtbData *decoder=new moench03CtbData();
-  cout << "decoder allocated " << endl;
-
-  moench03CommonMode *cmSub=NULL;
-  if (cmsub) {
-    cmSub=new moench03CommonMode(100);
-    cout << "common mode allocated " << endl;
-
-  } else {
-     
-    cout << "non allocating common mode  " << endl;
-  }
-  int iev=0;
-  int nph=0;
-
-  singlePhotonDetector<uint16_t> *filter=new singlePhotonDetector<uint16_t>(decoder, 3, 5, sign, cmSub, 1000, 100);
-  cout << "filter allocated " << endl;
-
-  char *buff;
-  char fname[10000];
-  int nf=0;
-  
-  eventType thisEvent=PEDESTAL;
-
-  // int iframe;
-  // double *data, ped, sigma;
-
-  // data=decoder->getCluster();
-
-
-  THStack *hs=new THStack("hs",fformat);
-
-  cout << "hstack allocated " << endl;
-
-
-  TH2F *h1=new TH2F("h1",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-  hs->Add(h1);
-  cout << "h1 allocated " << endl;
-
-  // TH2F *h2=NULL;
-  // TH2F *h3=NULL;
-  if (hitfinder) {
-    // h2=new TH2F("h2",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-    // cout << "h2 allocated " << endl;
-    // h3=new TH2F("h3",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-    // cout << "h3 allocated " << endl;
-    // // hetaX=new TH2F("hetaX",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5);
-    // //  hetaY=new TH2F("hetaY",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5);
-    // hs->Add(h2);
-    // hs->Add(h3);
-    // hs->Add(hetaX);
-    // hs->Add(hetaY);
-  }
-  if (hs->GetHists()) {
-    for (int i=0; i<1; i++)
-      if (hs->GetHists()->At(i)) cout << i << " " ; 
-    cout << " histos allocated " << endl;
-  } else
-    cout << "no hists in stack " << endl;
-  
-  
-  
-
-
-  int ix=20, iy=20, ir, ic;
-  int adc(0);
-
-  ifstream filebin;
-  Int_t iFrame;
-  TTree *tall;
-
-  if (hitfinder){
-    tall=filter->initEventTree(tit, &iFrame);
-
-   }
-  
-
-#ifdef MY_DEBUG
-
-  cout << "debug mode " << endl;
-  
-  TCanvas *myC;
-  TH2F *he;
-  TCanvas *cH1;
-  // TCanvas *cH2;
-  // TCanvas *cH3;
-  cH1=new TCanvas("ch1");
-  cH1->SetLogz();
-  h1->Draw("colz");
-  if (hitfinder) {
-    myC=new TCanvas("myc");
-    he=new TH2F("he","Event Mask",xmax-xmin, xmin, xmax, ymax-ymin, ymin, ymax);
-    he->SetStats(kFALSE);
-    he->Draw("colz");
-
-    // cH2=new TCanvas("ch2");
-    // cH2->SetLogz();
-    // h2->Draw("colz");
-    // cH3=new TCanvas("ch3");
-    // cH3->SetLogz();
-    // h3->Draw("colz");
-  }
-#endif
-
-  filter->newDataSet();
-
-
-  for (int irun=runmin; irun<runmax; irun++) {
-    sprintf(fname,fformat,irun);
-    cout << "file name " << fname << endl;
-
-    if( access(fname,F_OK) != -1){//check if file exists
-      filebin.open((const char *)(fname), ios::in | ios::binary);
-      nph=0;
-      while ( (buff=decoder->readNextFrame(filebin))) {//getting frames on the buffer
-      
-
-	if (hitfinder) {
-	  filter->newFrame();
-
-	  //calculate pedestals and common modes
-	  if (cmsub) {
-	    //	cout << "cm" << endl;
-	    for (ix=xmin; ix<xmax+1; ix++)
-	      for (iy=ymin; iy<ymax+1; iy++) {
-		thisEvent=filter->getEventType(buff, ix, iy,0);	      
-	      }//loop on pixels
-	  }//end if cmsub
-	}//end if hitfinder
-
-	//   cout << "new frame " << endl;
-
-	for (ix=xmin; ix<xmax+1; ix++)
-	  for (iy=ymin; iy<ymax+1; iy++) {
-	    //	  cout << ix << " " << iy << endl;
-	    thisEvent=filter->getEventType(buff, ix, iy, cmsub);
-	    iFrame=decoder->getFrameNumber(buff);
-
-#ifdef MY_DEBUG
-	    if (hitfinder) {
-	      //  if (iev%10==0)
-	      he->SetBinContent(ix+1-xmin, iy+1-ymin, (int)thisEvent);
-	    }
-#endif	  
-	  
-	    //  if (nf>10) {
-	    h1->Fill(filter->getClusterTotal(1), iy+NR*ix);
-	    if (hitfinder) {
-	      
-	      if (thisEvent==PHOTON_MAX ) {
-		nph++;
-
-		// h2->Fill(filter->getClusterTotal(2), iy+NR*ix);
-		// h3->Fill(filter->getClusterTotal(3), iy+NR*ix);
-
-		tall->Fill();
-	      }//end if PHOTON_MAX
-	    }//end if hitfinder
-	  }//end loop on pixels
-	//////////////////////////////////////////////////////////
-    
-#ifdef MY_DEBUG
-	//  cout << iev << " " << h1->GetEntries() << " " << h2->GetEntries() << endl;
-	//       if (iev%10==0) {
-	// 	myC->Modified();
-	// 	myC->Update();
-	// 	cH1->Modified();
-	// 	cH1->Update();
-	// 	cH2->Modified();
-	// 	cH2->Update();
-	// 	cH3->Modified();
-	// 	cH3->Update();
-	//       }
-	iev++;
-#endif		    
-	nf++;
-      
-	cout << "=" ;
-	delete [] buff;
-      }//end frame
-      cout << nph <<" Photons found"<< endl;
-      if (filebin.is_open())
-	filebin.close();	  
-      else
-	cout << "could not open file " << fname << endl;
-    }else{
-      cerr<<"File does not exist"<<endl;
-    }//end check on file path
-
-
-
-  }//end loop on files
-
-  if (hitfinder){
-    tall->Write(tall->GetName(),TObject::kOverwrite);
-  }
-   //////////////////////////////////////////////////////////
-    
-#ifdef MY_DEBUG 
-  if(hitfinder){
-    myC->Modified();
-    myC->Update();
-  }
-  cH1->Modified();
-  cH1->Update(); 
-  // cH2->Modified();
-  // cH2->Update();
-  // cH3->Modified();
-  // cH3->Update();
-#endif	
-  
-  delete decoder;
-  cout << "Read " << nf << " frames" << endl;
-  return hs;
-}
-/*********************************************************************************************/ 
-THStack *moench03ReadDataEvenOdd(char *fformat, char *tit, int runmin, int runmax, int nbins=1500, int hmin=-500, int hmax=1000, int xmin=1, int xmax=NC-1, int ymin=1, int ymax=NR-1, int cmsub=0, int hitfinder=1){
-  
-  double hc(0);
-  int sign(1);
-  moench03CtbData *decoder=new moench03CtbData();
-  cout << "decoder allocated " << endl;
-
-  moench03CommonMode *cmSub=NULL;
-  if (cmsub) {
-    cmSub=new moench03CommonMode(100);
-    cout << "common mode allocated " << endl;
-
-  } else {
-     
-    cout << "non allocating common mode  " << endl;
-  }
-  int iev=0;
-  int nph=0;
-
-  singlePhotonDetector<uint16_t> *filterEven=new singlePhotonDetector<uint16_t>(decoder, 3, 5, sign, cmSub, 1000, 100);
-  cout << "filter for even frames allocated " << endl;
-  singlePhotonDetector<uint16_t> *filterOdd=new singlePhotonDetector<uint16_t>(decoder, 3, 5, sign, cmSub, 1000, 100);
-  cout << "filter for odd frames allocated " << endl;
-
-  char *buff;
-  char fname[10000];
-  int nf=0;
-  
-  eventType thisEvent=PEDESTAL;
-
-  // int iframe;
-  // double *data, ped, sigma;
-
-  // data=decoder->getCluster();
-
-
-  THStack *hs=new THStack("hs",fformat);
-
-  cout << "hstack allocated " << endl;
-
-
-  TH2F *h1=new TH2F("h1",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-  hs->Add(h1);
-  cout << "h1 allocated " << endl;
-
-  TH2F *h2=NULL;
-  TH2F *h3=NULL;
-  if (hitfinder) {
-    h2=new TH2F("h2",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-    cout << "h2 allocated " << endl;
-    h3=new TH2F("h3",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-    cout << "h3 allocated " << endl;
-    // hetaX=new TH2F("hetaX",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5);
-    //  hetaY=new TH2F("hetaY",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5);
-    hs->Add(h2);
-    hs->Add(h3);
-    // hs->Add(hetaX);
-    // hs->Add(hetaY);
-  }
-
-
-
-  if (hs->GetHists()) {
-    for (int i=0; i<3; i++)
-      if (hs->GetHists()->At(i)) cout << i << " " ; 
-    cout << " histos allocated " << endl;
-  } else
-    cout << "no hists in stack " << endl;
-  
-  
-  ifstream filebin;
-
-
-  int ix=20, iy=20, ir, ic;
- 
-
-
-  Int_t iFrame;
-  TTree *tEven;
-  TTree *tOdd;
-  if (hitfinder){
-    tEven=filterEven->initEventTree(Form("%s_Even",tit), &iFrame);
-    cout<< "TTree for even frames initialized"<<endl;
-    tOdd=filterOdd->initEventTree(Form("%s_Odd",tit), &iFrame);
-    cout<< "TTree for odd frames initialized"<<endl;
-  }
-  
-
-#ifdef MY_DEBUG
-
-  cout << "debug mode " << endl;
-  
-  TCanvas *myC;
-  TH2F *he;
-  TCanvas *cH1;
-  TCanvas *cH2;
-  TCanvas *cH3;
-
-  if (hitfinder) {
-    myC=new TCanvas("myc");
-    he=new TH2F("he","Event Mask",xmax-xmin, xmin, xmax, ymax-ymin, ymin, ymax);
-    he->SetStats(kFALSE);
-    he->Draw("colz");
-    cH1=new TCanvas("ch1");
-    cH1->SetLogz();
-    h1->Draw("colz");
-    cH2=new TCanvas("ch2");
-    cH2->SetLogz();
-    h2->Draw("colz");
-    cH3=new TCanvas("ch3");
-    cH3->SetLogz();
-    h3->Draw("colz");
-
-    cout<<"Canvas allocated"<<endl;
-
-  }
-#endif
-
-  filterEven->newDataSet();
-  filterOdd->newDataSet();
- 
-
-
-  for (int irun=runmin; irun<runmax; irun++) {
-    sprintf(fname,fformat,irun);
-    cout << "file name " << fname << endl;
-    filebin.open((const char *)(fname), ios::in | ios::binary);
-    nph=0;
-    while ((buff=decoder->readNextFrame(filebin))) {
-      iFrame=decoder->getFrameNumber(buff);
-
-      if (hitfinder) {
-	if(iFrame%2==0){
-	  filterEven->newFrame();
-	}else{
-	  filterOdd->newFrame();
-	}
-
-	//calculate pedestals and common modes
-	if (cmsub) {
-	  //	cout << "cm" << endl;
-	  for (ix=xmin-1; ix<xmax+1; ix++)
-	    for (iy=ymin-1; iy<ymax+1; iy++) {
-	      if(iFrame%2==0){
-		thisEvent=filterEven->getEventType(buff, ix, iy,0);
-	      }else{
-		thisEvent=filterOdd->getEventType(buff, ix, iy,0);
-	      }	      
-	    }
-	  }
-	}
-
-      //   cout << "new frame " << endl;
-
-      for (ix=xmin-1; ix<xmax+1; ix++)
-	for (iy=ymin-1; iy<ymax+1; iy++) {
-	  if(iFrame%2==0){
-	    thisEvent=filterEven->getEventType(buff, ix, iy, cmsub);
-	  }else{
-	    thisEvent=filterOdd->getEventType(buff, ix, iy,cmsub);
-	  }
-
-
-
-
-#ifdef MY_DEBUG
-	  if (hitfinder) {
-
-	    he->SetBinContent(ix+1-xmin, iy+1-ymin, (int)thisEvent);
-	  }
-#endif	  
-	  
-	  if(iFrame%2==0){
-	    h1->Fill(filterEven->getClusterTotal(1), iy+NR*ix);
-	  }else{
-	    h1->Fill(filterOdd->getClusterTotal(1), iy+NR*ix);
-	  }
-	  if (hitfinder) {
-	      
-	    if (thisEvent==PHOTON_MAX ) {
-	      nph++;
-	      if(iFrame%2==0){
-		h2->Fill(filterEven->getClusterTotal(2), iy+NR*ix);
-		h3->Fill(filterEven->getClusterTotal(3), iy+NR*ix);
-		tEven->Fill();
-	      }else{
-		h2->Fill(filterOdd->getClusterTotal(2), iy+NR*ix);
-		h3->Fill(filterOdd->getClusterTotal(3), iy+NR*ix);
-		tOdd->Fill();
-	      }	      
-       
-	    }
-	  }
-
-
-	  // }
-	}
-      //////////////////////////////////////////////////////////
-    
-#ifdef MY_DEBUG
-      //  cout << iev << " " << h1->GetEntries() << " " << h2->GetEntries() << endl;
-      //       if (iev%10==0) {
-      // 	myC->Modified();
-      // 	myC->Update();
-      // 	cH1->Modified();
-      // 	cH1->Update();
-      // 	cH2->Modified();
-      // 	cH2->Update();
-      // 	cH3->Modified();
-      // 	cH3->Update();
-      //       }
-      iev++;
-#endif		    
-      nf++;
-      
-      cout << "=" ;
-      delete [] buff;
-    }
-    cout << nph << endl;
-    if (filebin.is_open())
-      filebin.close();	  
-    else
-      cout << "could not open file " << fname << endl;
-  }
-
-  if (hitfinder){
-    tEven->Write(tEven->GetName(),TObject::kOverwrite);
-    tOdd->Write(tOdd->GetName(),TObject::kOverwrite);
-  }
-   //////////////////////////////////////////////////////////
-    
-#ifdef MY_DEBUG  
-  myC->Modified();
-  myC->Update();
-  cH1->Modified();
-  cH1->Update(); 
-  cH2->Modified();
-  cH2->Update();
-  cH3->Modified();
-  cH3->Update();
-#endif	
-  
-  delete decoder;
-  cout << "Read " << nf << " frames" << endl;
-  return hs;
-}
-
-/***********************************************************************************/
-Int_t moench03DrawPedestals(char *fformat, char *tit, int runmin, int runmax, int nbins=1500, int hmin=-500, int hmax=1000, int xmin=1, int xmax=NC-1, int ymin=1, int ymax=NR-1, int cmsub=0, int hitfinder=1){
-
-  double hc(0);
-  int sign(1);
-  moench03CtbData *decoder=new moench03CtbData();
-  cout << "decoder allocated " << endl;
-
-  moench03CommonMode *cmSub=NULL;
-  if (cmsub) {
-    cmSub=new moench03CommonMode(100);
-    cout << "common mode allocated " << endl;
-
-  } else {
-     
-    cout << "non allocating common mode  " << endl;
-  }
-  int iev=0;
-  int nph=0;
-
-  singlePhotonDetector<uint16_t> *filter=new singlePhotonDetector<uint16_t>(decoder, 3, 5, sign, cmSub, 1000, 100);
-  cout << "filter allocated " << endl;
-
-  char *buff;
-  char fname[10000];
-  int nf=0;
-  
-  eventType thisEvent=PEDESTAL;
-  int iFrame(0);
-
-  // int iframe;
-  // double *data, ped, sigma;
-
-  // data=decoder->getCluster();
-
-  int nChx(xmax-xmin+2);
-  int nChy(ymax-ymin+2);
-  TH1F * HistoMap_All[nChx][nChy];
-  TH1F * HistoMap_Even[nChx][nChy];
-  TH1F * HistoMap_Odd[nChx][nChy];
-  for(Int_t ix=0; ix<nChx; ix++){
-    for(Int_t iy=0; iy<nChy; iy++){
-      HistoMap_All[ix][iy] = new TH1F(Form("h_%d_%d_All",ix+xmin,iy+ymin),"",8000,0,16000);
-      HistoMap_Even[ix][iy] = new TH1F(Form("h_%d_%d_Even",ix+xmin,iy+ymin),"",8000,0,16000);
-      HistoMap_Odd[ix][iy] = new TH1F(Form("h_%d_%d_Odd",ix+xmin,iy+ymin),"",8000,0,16000);
-    }
-  }
-   
-  filter->newDataSet();
-  float adc(0.);
-  ifstream filebin;
-  for (int irun=runmin; irun<runmax; irun++) {
-    sprintf(fname,fformat,irun);
-    cout << "file name " << fname << endl;
-    filebin.open((const char *)(fname), ios::in | ios::binary);
-    nph=0;
-    while ((buff=decoder->readNextFrame(filebin))) {
-      iFrame=decoder->getFrameNumber(buff);
-      filter->newFrame();
-
-      for(Int_t ix=0; ix<nChx; ix++){//loop on pixels
-	for(Int_t iy=0; iy<nChy; iy++){
-
-	  thisEvent=filter->getEventType(buff, ix+xmin, iy+ymin,cmsub);
-	  adc=decoder->getValue(buff,ix+xmin,iy+ymin);
-	  HistoMap_All[ix][iy]->Fill(adc);
-	  if(iFrame%2==0){
-	    HistoMap_Even[ix][iy]->Fill(adc);
-	  }else{
-	    HistoMap_Odd[ix][iy]->Fill(adc);
-	  }
-	}
-      }//end loop on pixels
-
-    }
-    if (filebin.is_open())
-      filebin.close();	  
-    else
-      cout << "could not open file " << fname << endl;
-
-
-
-  }//end loop on files
-
-  for(Int_t ix=0; ix<nChx; ix++){
-    for(Int_t iy=0; iy<nChy; iy++){
-      HistoMap_All[ix][iy]->Write();
-      HistoMap_Even[ix][iy]->Write();
-      HistoMap_Odd[ix][iy]->Write();
-    }
-  }
-
-  delete decoder;
-  return 1;
-
-}
diff --git a/slsDetectorCalibration/moench03ReadData10Gb.C b/slsDetectorCalibration/moench03ReadData10Gb.C
deleted file mode 100644
index ca468f04e..000000000
--- a/slsDetectorCalibration/moench03ReadData10Gb.C
+++ /dev/null
@@ -1,496 +0,0 @@
-#include <TH1D.h>
-#include <TH2D.h>
-#include <TPad.h>
-#include <TDirectory.h>
-#include <TEntryList.h>
-#include <TFile.h>
-#include <TMath.h>
-#include <TTree.h>
-#include <TChain.h>
-#include <THStack.h>
-#include <TCanvas.h>
-#include <TGraph.h>
-#include <stdio.h>
-//#include <deque>
-//#include <list>
-//#include <queue>
-#include <fstream>
-#include "moench03Ctb10GbT1Data.h"
-#include "moench03CommonMode.h"
-#define MYROOT1
-#include "singlePhotonDetector.h"
-
-//#include "MovingStat.h"
-
-using namespace std;
-
-#define NC 400
-#define NR 400
-
-
-//#define MY_DEBUG 1
-
-#ifdef MY_DEBUG
-#include <TCanvas.h>
-#endif
-
-
-
-TH2F *readImage(ifstream &filebin,   TH2F *h2=NULL, TH2F *hped=NULL) {
-   moench03Ctb10GbT1Data *decoder=new moench03Ctb10GbT1Data();
-  char *buff=decoder->readNextFrame(filebin);
-  
-
-//   TH1F *h1=new TH1F("h1","",400*400,0,400*400);
-//   int ip=0;
-  if (buff) {
-    if (h2==NULL) {
-      h2=new TH2F("h2","",400,0,400,400,0,400);
-      h2->SetStats(kFALSE);
-    }
-    //  cout << "." << endl;
-    for (int ix=0; ix<400; ix++) {
-      for (int iy=0; iy<400; iy++) {
-	//	cout <<  decoder->getDataSize() << " " << decoder->getValue(buff,ix,iy)<< endl;
-	h2->SetBinContent(ix+1,iy+1,decoder->getValue(buff,ix,iy));
-	//	h1->SetBinContent(++ip,decoder->getValue(buff,ix,iy));
-      }
-    }
-    if (hped) h2->Add(hped,-1);
-    return h2;
-  }
-  return NULL;
-}
-
-
-TH2F *readImage(char *fname, int iframe=0, TH2F *hped=NULL) {
-  ifstream filebin;
-  filebin.open((const char *)(fname), ios::in | ios::binary);
-  TH2F *h2=new TH2F("h2","",400,0,400,400,0,400);
-  TH2F *hh;
-  hh=readImage(filebin, h2, hped );
-  if (hh==NULL) {
-
-    delete h2;
-    return NULL;
-  }
-  for (int i=0; i<iframe; i++) {
-    if (hh==NULL) break;
-    hh=readImage(filebin, h2, hped );
-    if (hh)
-      ;// cout << "="<< endl;
-    else {
-      delete h2;
-      return NULL;
-    }
-  }
-  if (filebin.is_open())
-    filebin.close();
-  if (hped!=NULL)
-    h2->Add(hped,-1);
-
-  return h2;
-}
-
-
-TH2F *calcPedestal(char *fformat, int runmin, int runmax){
-  ifstream filebin;
-  char fname[10000];
-   moench03Ctb10GbT1Data *decoder=new  moench03Ctb10GbT1Data();
-  singlePhotonDetector<uint16_t> *filter=new singlePhotonDetector<uint16_t>(decoder, 3, 5, 1, NULL);
-  char *buff;
-  int ix,iy;
-  int ii=0;
-  TH2F* h2=NULL;
-
-  for (int irun=runmin; irun<=runmax; irun++) {
-    sprintf(fname,fformat,irun);
-    
-    cout << fname << endl;
-
-    filebin.open((const char *)(fname), ios::in | ios::binary);
-    while ((buff=decoder->readNextFrame(filebin))) {
-      for (ix=0; ix<400; ix++) {
-	for (iy=0; iy<400; iy++) {
-	  if (decoder->getValue(buff,ix,iy)>1000)
-	    filter->addToPedestal(decoder->getValue(buff,ix,iy), ix, iy);
-	}
-      }
-      delete [] buff;
-      //cout << "="<< endl;
-      ii++;
-    }
-    if (filebin.is_open())
-      filebin.close(); 
-    
-  }
-  if (ii>0) {
-    h2=new TH2F("hped","",400,0,400,400,0,400);
-    
-      for (ix=0; ix<400; ix++) {
-	for (iy=0; iy<400; iy++) {
-	  h2->SetBinContent(ix+1, iy+1,filter->getPedestal(ix,iy));
-	}
-      }
-
-  }
-  return h2;
-
-}
-
-
-TH1D *calcSpectrum(char *fformat, int runmin, int runmax, TH2F *hped=NULL){
-  ifstream filebin;
-  char fname[10000];
-  moench03Ctb10GbT1Data *decoder=new  moench03Ctb10GbT1Data();
-  TH1D *hspectrum=new TH1D("hsp","hsp",2500,-500,10000);
-  char *buff;
-  int ix,iy;
-  int ii=0;
-  TH2F* h2=NULL;
-  int ich=0;
-  Double_t ped=0;
-  
-  for (int irun=runmin; irun<=runmax; irun++) {
-    sprintf(fname,fformat,irun);
-    
-    cout << fname << endl;
-    filebin.open((const char *)(fname), ios::in | ios::binary);
-    while ((buff=decoder->readNextFrame(filebin))) {
-      for (ix=0; ix<200; ix++) {
-	for (iy=200; iy<400; iy++) {
-	  if (decoder->getValue(buff,ix,iy)>1000) {
-	    if(hped) ped=hped->GetBinContent(ix+1,iy+1);
-	    hspectrum->Fill(decoder->getValue(buff,ix,iy)-ped);
-	  }
-	  ich++;
-	}
-      }
-      delete [] buff;
-      //cout << "="<< endl;
-      ii++;
-    }
-    if (filebin.is_open())
-      filebin.close(); 
-    
-  }
-  return hspectrum;
-
-}
-TH2F *drawImage(char *fformat, int runmin, int runmax, TH2F *hped=NULL){
-  ifstream filebin;
-  char fname[10000];
-  moench03Ctb10GbT1Data *decoder=new  moench03Ctb10GbT1Data();
-  TH2F *hspectrum=new TH2F("hsp","hsp",400,0,400,400,0,400);
-  char *buff;
-  int ix,iy;
-  int ii=0;
-  TH2F* h2=NULL;
-  int ich=0;
-  Double_t ped=0;
-  
-  for (int irun=runmin; irun<=runmax; irun++) {
-    sprintf(fname,fformat,irun);
-    
-    cout << fname << endl;
-    filebin.open((const char *)(fname), ios::in | ios::binary);
-    while ((buff=decoder->readNextFrame(filebin))) {
-      for (ix=0; ix<400; ix++) {
-	for (iy=0; iy<400; iy++) {
-	  if (decoder->getValue(buff,ix,iy)>1000) {
-	    if(hped) ped=hped->GetBinContent(ix+1,iy+1);
-	    hspectrum->Fill(ix, iy, decoder->getValue(buff,ix,iy)-ped);
-	  }
-	  ich++;
-	}
-      }
-      delete [] buff;
-      //cout << "="<< endl;
-      ii++;
-    }
-    if (filebin.is_open())
-      filebin.close(); 
-    
-  }
-  return hspectrum;
-
-}
-
-
-
-
-
-/**
-
-Loops over data file to find single photons, fills the tree (and writes it to file, althoug the root file should be opened before) and creates 1x1, 2x2, 3x3 cluster histograms with ADCu on the x axis, channel number (160*x+y) on the y axis.
-
-  \param fformat file name format
-  \param tit title of the tree etc.
-  \param runmin minimum run number
-  \param runmax max run number
-  \param nbins  number of bins for spectrum hists
-  \param hmin histo minimum for spectrum hists
-  \param hmax histo maximum for spectrum hists
-  \param xmin minimum x coordinate
-  \param xmax maximum x coordinate
-  \param ymin minimum y coordinate
-  \param ymax maximum y coordinate
-  \param cmsub  enable commonmode subtraction
-  \returns pointer to histo stack with cluster spectra
-*/
-
-THStack *moench03ReadData(char *fformat, char *tit, int runmin, int runmax, int nbins=1500, int hmin=-500, int hmax=1000,  int xmin=1, int xmax=NC-1, int ymin=1, int ymax=NR-1, int cmsub=0, int hitfinder=1) {
-  double hc=0;
-  int sign=1;
-
-   moench03Ctb10GbT1Data *decoder=new  moench03Ctb10GbT1Data();
-  cout << "decoder allocated " << endl;
-
-   moench03CommonMode *cmSub=NULL;
-   if (cmsub) {
-     cmSub=new moench03CommonMode(100);
-     cout << "common mode allocated " << endl;
-
-   } else {
-     
-     cout << "non allocating common mode  " << endl;
-   }
-   int iev=0;
-  int nph=0;
-
-  singlePhotonDetector<uint16_t> *filter=new singlePhotonDetector<uint16_t>(decoder, 3, 5, sign, cmSub, 100, 10);
-  cout << "filter allocated " << endl;
-
-  char *buff;
-  char fname[10000];
-  int nf=0;
-  
-  eventType thisEvent=PEDESTAL;
-
-  // int iframe;
-  // double *data, ped, sigma;
-
-  // data=decoder->getCluster();
-
-
-  THStack *hs=new THStack("hs",fformat);
-
-  cout << "hstack allocated " << endl;
-
-
-  TH2F *h1=NULL;//new TH2F("h1",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-  // hs->Add(h1);
-  // cout << "h1 allocated " << endl;
-
-  TH2F *h2=NULL;
-  TH2F *h3=NULL;
-  // if (hitfinder) {
-  //   h2=new TH2F("h2",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-  // cout << "h2 allocated " << endl;
-  //   h3=new TH2F("h3",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-  // cout << "h3 allocated " << endl;
-  //   // hetaX=new TH2F("hetaX",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5);
-  //   //  hetaY=new TH2F("hetaY",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5);
-  //   hs->Add(h2);
-  //   hs->Add(h3);
-  //   // hs->Add(hetaX);
-  //   // hs->Add(hetaY);
-  // }
-  // if (hs->GetHists()) {
-  //   for (int i=0; i<3; i++)
-  //     if (hs->GetHists()->At(1)) cout << i << " " ; 
-  //   cout << " histos allocated " << endl;
-  // } else
-  //   cout << "no hists in stack " << endl;
-  
-  
-  ifstream filebin;
-
-
-  int ix=20, iy=20, ir, ic;
-
-
-  Int_t iFrame=-1;
-  Int_t np=-1;
-  TTree *tall;
-  if (hitfinder)
-    tall=filter->initEventTree(tit, &iFrame);
-
-
-  
-
-#ifdef MY_DEBUG
-
-  cout << "debug mode " << endl;
-  
-  TCanvas *myC;
-  TH2F *he;
-  TCanvas *cH1;
-  TCanvas *cH2;
-  TCanvas *cH3;
-
-  if (hitfinder) {
-    myC=new TCanvas("myc");
-    he=new TH2F("he","Event Mask",xmax-xmin, xmin, xmax, ymax-ymin, ymin, ymax);
-    he->SetStats(kFALSE);
-    he->Draw("colz");
-    cH1=new TCanvas("ch1");
-    cH1->SetLogz();
-    h1->Draw("colz");
-    cH2=new TCanvas("ch2");
-    cH2->SetLogz();
-    h2->Draw("colz");
-    cH3=new TCanvas("ch3");
-    cH3->SetLogz();
-    h3->Draw("colz");
-  }
-#endif
-
-  filter->newDataSet();
-
-
-  for (int irun=runmin; irun<runmax; irun++) {
-    sprintf(fname,fformat,irun);
-    cout << "file name " << fname << endl;
-    filebin.open((const char *)(fname), ios::in | ios::binary);
-    nph=0;
-    if (filebin.is_open())
-      ;
-    else
-      cout << "Could not open file " << fname<< endl;
-    while ((buff=decoder->readNextFrame(filebin, iFrame))) {
-      //cout << (void*)buff << endl;
-      filter->newFrame();
-
-	// if (cmsub) {
-	// //	cout << "cm" << endl;
-	//   for (ix=xmin-1; ix<xmax+1; ix++)
-	//     for (iy=ymin-1; iy<ymax+1; iy++) {
-	//       thisEvent=filter->getEventType(buff, ix, iy,0);
-	//     }
-	// }
-      // if (hitfinder) {
-
-      // 	//calculate pedestals and common modes
-      // }
-
-      //   cout << "new frame " << endl;
-
-      for (ix=xmin-1; ix<xmax+1; ix++)
-	for (iy=ymin-1; iy<ymax+1; iy++) {
-	  //  cout << buff << " " << iFrame << " " << ix << " " << iy << endl;
-	    thisEvent=filter->getEventType(buff, ix, iy, cmsub);
-	  //  if (nf>10) {
-	    // h1->Fill(filter->getClusterTotal(1), iy+NR*ix);
-
-#ifdef MY_DEBUG
-	    //  if (iev%10==0)
-	    he->SetBinContent(ix+1-xmin, iy+1-ymin, (int)thisEvent);
-#endif	  
-	  
-	  if (hitfinder) {
-	      
-	      if (thisEvent==PHOTON_MAX ) {
-		nph++;
-
-		// h2->Fill(filter->getClusterTotal(2), iy+NR*ix);
-		// h3->Fill(filter->getClusterTotal(3), iy+NR*ix);
-		//	iFrame=decoder->getFrameNumber(buff);
-
-		tall->Fill();
-	   
-       
-	      }
-	  
-	    
-	  } // else {
-	  //   filter->addToPedestal(decoder->getValue(buff,ix,iy, cmsub));
-	    
-	  // }
-	    
-	  iFrame=-1;
-	  np=-1;
-	    // }
-	}
-	  //////////////////////////////////////////////////////////
-    
-#ifdef MY_DEBUG
-      //    cout << iev << " " << h1->GetEntries() << " " << h2->GetEntries() << endl;
-//       if (iev%10==0) {
-// 	myC->Modified();
-// 	myC->Update();
-// 	cH1->Modified();
-// 	cH1->Update();
-// 	cH2->Modified();
-// 	cH2->Update();
-// 	cH3->Modified();
-// 	cH3->Update();
-//       }
-      iev++;
-#endif		    
-      nf++;
-      
-      // cout << "=" ;
-      delete [] buff;
-    }
-    //  cout << nph << endl;
-    if (filebin.is_open())
-    filebin.close();	  
-    else
-      cout << "could not open file " << fname << endl;
-  } 
-  if (hitfinder)
-    tall->Write(tall->GetName(),TObject::kOverwrite);
-  
-   //////////////////////////////////////////////////////////
-    
-#ifdef MY_DEBUG  
-	myC->Modified();
-	myC->Update();
-	cH1->Modified();
-	cH1->Update();
-	cH2->Modified();
-	cH2->Update();
-	cH3->Modified();
-	cH3->Update();
-#endif	
-  
-  delete decoder;
-  cout << "Read " << nf << " frames" << endl;
-  return hs;
-}
-  
-TGraph* checkFrameNumber(char *fformat, int runmin, int runmax, int ix, int iy){
-  ifstream filebin;
-  char fname[10000];
-  moench03Ctb10GbT1Data *decoder=new  moench03Ctb10GbT1Data();
-  char *buff;
-  int ii=0;
- 
-  TGraph *g=new TGraph();
-
-  
-
-  for (int irun=runmin; irun<=runmax; irun++) {
-    sprintf(fname,fformat,irun);
-    
-    cout << fname << endl;
-
-    filebin.open((const char *)(fname), ios::in | ios::binary);
-    
-    if (filebin.is_open()) {
-    while ((buff=decoder->readNextFrame(filebin))) {
-      g->SetPoint(ii,decoder->getFrameNumber(buff),decoder->getValue(buff,ix,iy));   
-      ii++;
-      delete [] buff;
-    }
-      //cout << "="<< endl;
-    filebin.close(); 
-    } else
-      cout << "Could not open file " << fname << endl;
-    
-  }
- 
-  return g;
-
-}
diff --git a/slsDetectorCalibration/moenchExecutables/Makefile.cluster_finder b/slsDetectorCalibration/moenchExecutables/Makefile.cluster_finder
new file mode 100644
index 000000000..925111af0
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/Makefile.cluster_finder
@@ -0,0 +1,33 @@
+
+#CBFLIBDIR= /afs/psi.ch/project/sls_det_software/CBFlib-0.9.5/
+#ZMQLIB=../slsReceiverSoftware/include
+#LIBRARYCBF=$(CBFLIBDIR)/lib/*.o
+INCDIR=-IslsDetectorCalibration  -I. -IetaVEL -I../slsReceiverSoftware/include 
+#-I$(CBFLIBDIR)/include/
+#LIBHDF5=
+LDFLAG= -L/usr/lib64/ -lpthread -lm  -lstdc++ -L.  -pthread -lrt -L$(CBFLIBDIR)/lib/   -ltiff 
+#-L$(ZMQLIB) -lzmq
+#-L../../bin 
+MAIN=moench03ClusterFinder.cpp
+#-lhdf5
+#DESTDIR?=../bin
+
+all: moenchClusterFinder moenchMakeEta moenchInterpolation moenchNoInterpolation
+
+
+
+moenchClusterFinder:  $(MAIN)  $(INCS) clean
+			 g++ -o moenchClusterFinder  $(MAIN)  $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) tiffIO.cpp -DSAVE_ALL
+
+moenchMakeEta:  moench03MakeEta.cpp  $(INCS) clean
+			 g++ -o moenchMakeEta moench03MakeEta.cpp    $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) tiffIO.cpp -DSAVE_ALL
+
+moenchInterpolation:  moench03Interpolation.cpp  $(INCS) clean
+			 g++ -o moenchInterpolation moench03Interpolation.cpp    $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) tiffIO.cpp -DSAVE_ALL
+
+moenchNoInterpolation:  moench03NoInterpolation.cpp  $(INCS) clean
+			 g++ -o moenchNoInterpolation moench03NoInterpolation.cpp    $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) tiffIO.cpp -DSAVE_ALL
+
+clean: 	
+	rm -f  moenchClusterFinder moenchMakeEta 
+
diff --git a/slsDetectorCalibration/Makefile.moench b/slsDetectorCalibration/moenchExecutables/Makefile.moench
similarity index 100%
rename from slsDetectorCalibration/Makefile.moench
rename to slsDetectorCalibration/moenchExecutables/Makefile.moench
diff --git a/slsDetectorCalibration/Makefile.moench_eta b/slsDetectorCalibration/moenchExecutables/Makefile.moench_eta
similarity index 54%
rename from slsDetectorCalibration/Makefile.moench_eta
rename to slsDetectorCalibration/moenchExecutables/Makefile.moench_eta
index 5f9b8ed56..7f575d6cb 100644
--- a/slsDetectorCalibration/Makefile.moench_eta
+++ b/slsDetectorCalibration/moenchExecutables/Makefile.moench_eta
@@ -2,21 +2,22 @@
 CBFLIBDIR= /home/l_msdetect/CBFlib-0.9.5
 ZMQLIB=../slsReceiverSoftware/include
 LIBRARYCBF=$(CBFLIBDIR)/lib/*.o
-INCDIR=-IslsDetectorCalibration -I../slsReceiverSoftware/include -I$(CBFLIBDIR)/include/ -I. -IetaVEL
+INCDIR=-IslsDetectorCalibration -I../slsReceiverSoftware/include -I$(CBFLIBDIR)/include/ -I. 
+#-IetaVEL
 LIBHDF5=
 LDFLAG= -L/usr/lib64/ -lpthread -lm  -lstdc++ -L. -lzmq -pthread -lrt -L$(CBFLIBDIR)/lib/ -lhdf5 -ltiff -L$(ZMQLIB)
 #-L../../bin 
-MAIN=moench03ZmqOnTheFlyEta.cpp
+MAIN=moench03ClusterFinder.cpp
 
 #DESTDIR?=../bin
 
-all: moench03ZmqOnTheFlyEta
+all: moench03ClusterFinder
 
 
 
-moench03ZmqOnTheFlyEta:  $(MAIN)  $(INCS) clean
-			 g++ -o moench03ZmqOnTheFlyEta  $(MAIN)  $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) tiffIO.cpp -DSAVE_ALL
+moench03ClusterFinder:  $(MAIN)  $(INCS) clean
+			 g++ -o moenchClusterFinder  $(MAIN)  $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) tiffIO.cpp -DSAVE_ALL
 
 clean: 	
-	rm -f  moench03ZmqOnTheFlyEta
+	rm -f  moench03ClusterFinder
 
diff --git a/slsDetectorCalibration/Makefile.moench_zmq b/slsDetectorCalibration/moenchExecutables/Makefile.moench_zmq
similarity index 100%
rename from slsDetectorCalibration/Makefile.moench_zmq
rename to slsDetectorCalibration/moenchExecutables/Makefile.moench_zmq
diff --git a/slsDetectorCalibration/moenchExecutables/Makefile.phoenix b/slsDetectorCalibration/moenchExecutables/Makefile.phoenix
new file mode 100644
index 000000000..99465f439
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/Makefile.phoenix
@@ -0,0 +1,30 @@
+
+CBFLIBDIR= /afs/psi.ch/project/sls_det_software/CBFlib-0.9.5/
+#ZMQLIB=../slsReceiverSoftware/include
+LIBRARYCBF=$(CBFLIBDIR)/lib/*.o
+INCDIR=-IslsDetectorCalibration  -I. -IetaVEL -I../slsReceiverSoftware/include -I$(CBFLIBDIR)/include/
+#LIBHDF5=
+LDFLAG= -L/usr/lib64/ -lpthread -lm  -lstdc++ -L.  -pthread -lrt -L$(CBFLIBDIR)/lib/   -ltiff -lhdf5
+#-L$(ZMQLIB) -lzmq
+#-L../../bin 
+MAIN=moench03ClusterFinderPhoenix.cpp
+#
+#DESTDIR?=../bin
+
+all: moenchClusterFinderPhoenix 
+#moenchMakeEtaPhoenix moenchInterpolationPhoenix
+
+
+
+moenchClusterFinderPhoenix:  $(MAIN)  $(INCS) clean
+			 g++ -o moenchClusterFinderPhoenix  $(MAIN)  $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) tiffIO.cpp -DSAVE_ALL
+
+moenchMakeEtaPhoenix:  moench03MakeEtaPhoenix.cpp  $(INCS) clean
+			 g++ -o moenchMakeEta moench03MakeEta.cpp    $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) tiffIO.cpp -DSAVE_ALL
+
+moenchInterpolationPhoenix:  moench03InterpolationPhoenix.cpp  $(INCS) clean
+			 g++ -o moenchInterpolation moench03Interpolation.cpp    $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) tiffIO.cpp -DSAVE_ALL
+
+clean: 	
+	rm -f  moenchClusterFinderPhoenix moenchMakeEtaPhoenix  moenchInterpolationPhoenix
+
diff --git a/slsDetectorCalibration/moenchExecutables/Makefile.tiff_to_th2f b/slsDetectorCalibration/moenchExecutables/Makefile.tiff_to_th2f
new file mode 100644
index 000000000..95b9dba53
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/Makefile.tiff_to_th2f
@@ -0,0 +1,25 @@
+#INCSROOT= receiverGui.h 
+#INCS= $(INCSROOT) moench03_receiver.h 
+#LINKDEF=receiverGuiLinkDef.h 
+
+CBFLIBDIR= /afs/psi.ch/project/sls_det_software/CBFlib-0.9.5/
+ZMQLIB=../slsReceiverSoftware/include
+LIBRARYCBF=$(CBFLIBDIR)/lib/*.o
+INCDIR=-IslsDetectorCalibration  -I. -IetaVEL -I../slsReceiverSoftware/include -I$(CBFLIBDIR)/include/ -I$(ROOTSYS)/include
+#LIBHDF5=
+LDFLAG= -L/usr/lib64/ -lpthread -lm  -lstdc++ -L.  -pthread -lrt -L$(CBFLIBDIR)/lib/ -lhdf5  -ltiff -L$(ZMQLIB) -lzmq
+
+MAIN=tiff_to_th2f.cpp 
+
+
+all: tiff_to_th2f 
+
+
+
+tiff_to_th2f: $(MAIN)  $(INCS) 
+	      	
+	   g++ -o tiff_to_th2f  $(MAIN) `root-config --cflags --glibs` -lMinuit -lm -ltiff -lstdc++ $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) tiffIO.cpp 
+
+clean: 	
+	rm -f tiff_to_th2f
+
diff --git a/slsDetectorCalibration/moenchExecutables/moench03ClusterFinder.cpp b/slsDetectorCalibration/moenchExecutables/moench03ClusterFinder.cpp
new file mode 100644
index 000000000..6ce7380d5
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/moench03ClusterFinder.cpp
@@ -0,0 +1,255 @@
+//#include "ansi.h"
+#include <iostream>
+
+//#include "moench03T1ZmqData.h"
+#include "moench03T1ReceiverData.h"
+
+// #include "interpolatingDetector.h"
+//#include "etaInterpolationPosXY.h"
+// #include "linearInterpolation.h"
+// #include "noInterpolation.h"
+#include "multiThreadedAnalogDetector.h"
+#include "singlePhotonDetector.h"
+//#include "interpolatingDetector.h"
+
+#include <stdio.h>
+#include <map>
+#include <fstream>
+#include <sys/stat.h>
+
+#include <ctime>
+using namespace std;
+
+
+int main(int argc, char *argv[]) {
+
+
+  if (argc<7) {
+    cout << "Usage is " << argv[0] << "indir outdir fname runmin runmax pedfname" << endl;
+  }
+  int p=10000;
+  int fifosize=1000;
+  int nthreads=20;
+  int nsubpix=25;
+  int etabins=nsubpix*10;
+  double etamin=-1, etamax=2;
+  int csize=3;
+  int nx=400, ny=400;
+  int save=1;
+  int nsigma=5;
+  int nped=1000;
+  int ndark=100;
+  int ok;
+  int iprog=0;
+
+  moench03T1ReceiverData *decoder=new  moench03T1ReceiverData();
+  //moench03T1ZmqData *decoder=new  moench03T1ZmqData();
+  singlePhotonDetector *filter=new singlePhotonDetector(decoder,csize, nsigma, 1, 0, nped, 200);
+  //  char tit[10000];
+
+
+
+
+  // filter->readPedestals("/scratch/ped_100.tiff");
+  // interp->readFlatField("/scratch/eta_100.tiff",etamin,etamax);
+  // cout << "filter "<< endl;
+  
+
+  int size = 327680;////atoi(argv[3]);
+  
+  int* image;
+	//int* image =new int[327680/sizeof(int)];
+  filter->newDataSet();
+
+
+  int ff, np;
+  int dsize=decoder->getDataSize();
+  cout << " data size is " << dsize;
+  
+
+  char data[dsize];
+
+  ifstream filebin;
+  char *indir=argv[1];
+  char *outdir=argv[2];
+  char *fformat=argv[3];
+  int runmin=atoi(argv[4]);
+  int runmax=atoi(argv[5]);
+  
+  char fname[10000];
+  char outfname[10000];
+  char imgfname[10000];
+  char pedfname[10000];
+  strcpy(pedfname,argv[6]);
+  char fn[10000];
+  
+  std::time_t end_time;
+
+  FILE *of=NULL;
+  cout << "input directory is " << indir << endl;
+  cout << "output directory is " << outdir << endl;
+  cout << "fileformat is " << fformat << endl;
+  cout << "pedestal file is " << fformat << endl;
+  
+
+  std::time(&end_time);
+  cout << std::ctime(&end_time) <<   endl;
+filter->setFrameMode(eFrame);
+	//  mt->setFrameMode(ePedestal);
+  cout <<   pedfname<< endl;
+
+    filebin.open((const char *)(pedfname), ios::in | ios::binary);
+    //filebin.open((const char *)(fname), ios::in | ios::binary);
+
+  //      //open file
+  if (filebin.is_open()){
+      //     //while read frame 
+    cout << "pedestal file " << endl;
+    while (decoder->readNextFrame(filebin, ff, np,data)) {
+      //   cout << ff << " " << np << endl;
+      //         //push
+      // mt->pushData(buff);
+      // //         //pop
+      //mt->nextThread();
+      // // 		//	cout << " " << (void*)buff;
+      //mt->popFree(buff);
+      filter->processData(data);
+      }
+    filebin.close();	 
+    //      //close file 
+    //     //join threads
+    //   while (mt->isBusy()) {;}//wait until all data are processed from the queues
+    // cout << outfname << endl; 
+    // filter->writePedestals(outfname); 
+    // sprintf(outfname,"%s/%s_pedimg.tiff",outdir,fn);
+
+    // cout << outfname << endl; 
+    
+    // filter->writeImage(outfname);
+    // //mt->clearImage();
+  } else 
+     cout << "Could not open "<< pedfname << " for reading " << endl;
+  
+
+
+  // for (int ix=0; ix<400; ix++)
+  //   for (int iy=0; iy<400; iy++)
+  //     cout << ix << " " << iy << " " << filter->getPedestal(ix,iy) << " " << filter->getPedestalRMS(ix,iy) << endl;
+
+
+
+
+
+
+
+
+  char* buff;
+  multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
+
+  
+  // mt->setFrameMode(eFrame); //need to find a way to switch between flat and frames!
+  // mt->prepareInterpolation(ok);
+ mt->setFrameMode(eFrame);
+  mt->StartThreads();
+  mt->popFree(buff);
+
+
+
+  int ifr=0;
+  // //loop on files
+  // mt->setFrameMode(eFrame);
+ //mt->setFrameMode(eFlat);
+
+
+
+
+
+
+  for (int irun=runmin; irun<runmin+5; irun++) {
+    sprintf(fn,fformat,irun);
+    sprintf(fname,"%s/%s.raw",indir,fn);
+
+
+
+    filebin.open((const char *)(fname), ios::in | ios::binary);
+    //      //open file
+    if (filebin.is_open()){
+      //     //while read frame 
+      while (decoder->readNextFrame(filebin, ff, np,buff)) {
+	//	cout << "*"<<ifr++<<"*"<<ff<< endl;
+	//	cout << ff << " " << np << endl;
+  	//         //push
+  		mt->pushData(buff);
+  // 	//         //pop
+  		mt->nextThread();
+  // // 		//	cout << " " << (void*)buff;
+   		mt->popFree(buff);
+	
+      }
+      //  cout << "--" << endl;
+      filebin.close();	 
+    
+
+    }
+
+  }
+
+  while (mt->isBusy()) {;}//wait until all data are processed from the queues
+  mt->clearImage();
+
+  for (int irun=runmin; irun<runmax; irun++) {
+    sprintf(fn,fformat,irun);
+    sprintf(fname,"%s/%s.raw",indir,fn);
+    sprintf(outfname,"%s/%s.clust",outdir,fn);
+    sprintf(imgfname,"%s/%s.tiff",outdir,fn);
+    std::time(&end_time);
+    cout << std::ctime(&end_time) <<    endl;
+    cout <<  fname << " " << outfname << " " << imgfname <<  endl;
+    filebin.open((const char *)(fname), ios::in | ios::binary);
+    //      //open file
+    if (filebin.is_open()){
+      of=fopen(outfname,"w");
+      if (of) {
+  	mt->setFilePointer(of);
+	//	cout << "file pointer set " << endl;
+      } else {
+  	cout << "Could not open "<< outfname << " for writing " << endl;
+  	mt->setFilePointer(NULL);
+  	return 1;
+      }
+      //     //while read frame 
+      while (decoder->readNextFrame(filebin, ff, np,buff)) {
+	//	cout << "*"<<ifr++<<"*"<<ff<< endl;
+	//	cout << ff << " " << np << endl;
+  	//         //push
+  		mt->pushData(buff);
+  // 	//         //pop
+  		mt->nextThread();
+  // // 		//	cout << " " << (void*)buff;
+   		mt->popFree(buff);
+	
+      }
+      //  cout << "--" << endl;
+      filebin.close();	 
+      //      //close file 
+      //     //join threads
+      while (mt->isBusy()) {;}//wait until all data are processed from the queues
+      if (of)
+  	fclose(of);
+      
+      mt->writeImage(imgfname);
+      mt->clearImage();
+   
+      std::time(&end_time);
+      cout << std::ctime(&end_time) <<   endl;
+
+    } else 
+     cout << "Could not open "<< fname << " for reading " << endl;
+      
+    
+  }
+    
+
+  return 0;
+}
+
diff --git a/slsDetectorCalibration/moenchExecutables/moench03ClusterFinderPhoenix.cpp b/slsDetectorCalibration/moenchExecutables/moench03ClusterFinderPhoenix.cpp
new file mode 100644
index 000000000..569f104be
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/moench03ClusterFinderPhoenix.cpp
@@ -0,0 +1,192 @@
+//#include "ansi.h"
+#include <iostream>
+
+//#include "moench03T1ZmqData.h"
+//#include "moench03T1ReceiverData.h"
+
+#include "moench03Ctb10GbT1Data.h"
+
+// #include "interpolatingDetector.h"
+//#include "etaInterpolationPosXY.h"
+// #include "linearInterpolation.h"
+// #include "noInterpolation.h"
+#include "multiThreadedAnalogDetector.h"
+#include "singlePhotonDetector.h"
+//#include "interpolatingDetector.h"
+
+#include <stdio.h>
+#include <map>
+#include <fstream>
+#include <sys/stat.h>
+
+#include <ctime>
+using namespace std;
+
+
+int main(int argc, char *argv[]) {
+
+
+  if (argc<6) {
+    cout << "Usage is " << argv[0] << "indir outdir fname runmin runmax " << endl;
+    return 0;
+  }
+  int p=10000;
+  int fifosize=1000;
+  int nthreads=20;
+  int nsubpix=25;
+  int etabins=nsubpix*10;
+  double etamin=-1, etamax=2;
+  int csize=3;
+  int nx=400, ny=400;
+  int save=1;
+  int nsigma=5;
+  int nped=1000;
+  int ndark=100;
+  int ok;
+  int iprog=0;
+  moench03Ctb10GbT1Data *decoder=new  moench03Ctb10GbT1Data();
+  cout << "decoder" << endl;
+  //moench03T1ReceiverData *decoder=new  moench03T1ReceiverData();
+  //moench03T1ZmqData *decoder=new  moench03T1ZmqData();
+  singlePhotonDetector *filter=new singlePhotonDetector(decoder,csize, nsigma, 1, 0, nped, 200);
+  //  char tit[10000];
+  cout << "filter" << endl;
+
+
+
+
+  // filter->readPedestals("/scratch/ped_100.tiff");
+  // interp->readFlatField("/scratch/eta_100.tiff",etamin,etamax);
+  // cout << "filter "<< endl;
+  
+
+  int size = 327680;////atoi(argv[3]);
+  
+  int* image;
+	//int* image =new int[327680/sizeof(int)];
+  filter->newDataSet();
+
+  cout << "dataset" << endl;
+
+  int ff, np;
+  int dsize=decoder->getDataSize();
+  cout << " data size is " << dsize << endl;
+  
+
+  char data[dsize];
+
+  ifstream filebin;
+  char *indir=argv[1];
+  cout << "input directory is " << indir << endl;
+  char *outdir=argv[2];
+  cout << "output directory is " << outdir << endl;
+  char *fformat=argv[3];
+  cout << "fileformat is " << fformat << endl;
+  int runmin=atoi(argv[4]);
+  cout << "runmin : " << runmin << endl;
+  int runmax=atoi(argv[5]);
+  cout << "runmax : " << runmax << endl;
+  
+  char fname[10000];
+  char outfname[10000];
+  char imgfname[10000];
+  char pedfname[10000];
+  char fn[10000];
+  
+  std::time_t end_time;
+
+  FILE *of=NULL;
+  
+  
+  cout << "time " << endl;
+  std::time(&end_time);
+  cout << std::ctime(&end_time) <<   endl;
+  filter->setFrameMode(eFrame);
+	//  mt->setFrameMode(ePedestal);
+ 
+
+  // for (int ix=0; ix<400; ix++)
+  //   for (int iy=0; iy<400; iy++)
+  //     cout << ix << " " << iy << " " << filter->getPedestal(ix,iy) << " " << filter->getPedestalRMS(ix,iy) << endl;
+
+
+  char* buff;
+  cout << "aa " << endl;
+  multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
+  cout << "mt " << endl;
+  
+  // mt->setFrameMode(eFrame); //need to find a way to switch between flat and frames!
+  // mt->prepareInterpolation(ok);
+ mt->setFrameMode(eFrame);
+  mt->StartThreads();
+  mt->popFree(buff);
+
+
+
+  int ifr=0;
+  // //loop on files
+  // mt->setFrameMode(eFrame);
+ //mt->setFrameMode(eFlat);
+
+
+
+
+
+  for (int irun=runmin; irun<runmax; irun++) {
+    sprintf(fn,fformat,irun);
+    sprintf(fname,"%s/%s.raw",indir,fn);
+    sprintf(outfname,"%s/%s.clust",outdir,fn);
+    sprintf(imgfname,"%s/%s.tiff",outdir,fn);
+    std::time(&end_time);
+    cout << std::ctime(&end_time) <<    endl;
+    cout <<  fname << " " << outfname << " " << imgfname <<  endl;
+    filebin.open((const char *)(fname), ios::in | ios::binary);
+    //      //open file
+    if (filebin.is_open()){
+      of=fopen(outfname,"w");
+      if (of) {
+  	mt->setFilePointer(of);
+	//	cout << "file pointer set " << endl;
+      } else {
+  	cout << "Could not open "<< outfname << " for writing " << endl;
+  	mt->setFilePointer(NULL);
+  	return 1;
+      }
+      //     //while read frame 
+      ff=-1;
+      while (decoder->readNextFrame(filebin, ff, np,buff)) {
+	//	cout << "*"<<ifr++<<"*"<<ff<< endl;
+	//	cout << ff << " " << np << endl;
+  	//         //push
+  		mt->pushData(buff);
+  // 	//         //pop
+  		mt->nextThread();
+  // // 		//	cout << " " << (void*)buff;
+   		mt->popFree(buff);
+	
+      ff=-1;
+      }
+      //  cout << "--" << endl;
+      filebin.close();	 
+      //      //close file 
+      //     //join threads
+      while (mt->isBusy()) {;}//wait until all data are processed from the queues
+      if (of)
+  	fclose(of);
+      
+      mt->writeImage(imgfname);
+      mt->clearImage();
+   
+      std::time(&end_time);
+      cout << std::ctime(&end_time) <<   endl;
+
+    } else 
+     cout << "Could not open "<< fname << " for reading " << endl;
+      
+    
+  }
+    
+
+  return 0;
+}
+
diff --git a/slsDetectorCalibration/moenchExecutables/moench03Interpolation.cpp b/slsDetectorCalibration/moenchExecutables/moench03Interpolation.cpp
new file mode 100644
index 000000000..d2932bfa8
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/moench03Interpolation.cpp
@@ -0,0 +1,171 @@
+
+#include "ansi.h"
+#include <iostream>
+
+#include "moench03T1ZmqData.h"
+#include "single_photon_hit.h"
+
+ #include "etaInterpolationPosXY.h"
+
+using namespace std;
+#define NC 400
+#define NR 400
+
+
+int main(int argc, char *argv[]) {
+/**
+ * trial.o [socket ip] [starting port number] [outfname]
+ *
+ */
+
+  if (argc<7) {
+    cout << "Wrong usage! Should be: "<< argv[0] << " infile " << " etafile outfile runmin runmax ns" << endl;
+    return 1;
+  }
+
+  char infname[10000];
+  char outfname[10000];
+  int runmin=atoi(argv[4]);
+  int runmax=atoi(argv[5]);
+  int nsubpix=atoi(argv[6]);
+  
+  int etabins=1000;//nsubpix*2*100;
+  double etamin=-1, etamax=2;
+  int quad;
+  double sum, totquad;
+  double sDum[2][2];
+  double etax, etay, int_x, int_y;
+  int ok;
+
+  int ix, iy, isx, isy;
+
+
+    FILE *f=NULL;
+
+    single_photon_hit cl(3,3);
+    etaInterpolationPosXY *interp=new etaInterpolationPosXY(NC, NR, nsubpix, etabins, etamin, etamax);
+    interp->readFlatField(argv[2]);
+    interp->prepareInterpolation(ok);
+
+    int *img;
+    float *totimg=new float[NC*NR*nsubpix*nsubpix];
+    for (ix=0; ix<NC; ix++) {
+      for (iy=0; iy<NR; iy++) {
+	for (isx=0; isx<nsubpix; isx++) {
+	  for (isy=0; isy<nsubpix; isy++) {
+	    totimg[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)]=0;
+	      }
+	}
+      }
+    }
+#ifdef FF
+    
+    float ff[nsubpix*nsubpix];
+    float *ffimg=new float[NC*NR*nsubpix*nsubpix];
+    float totff=0;
+
+	
+#endif
+
+    for (int irun=runmin; irun<runmax; irun++) {
+      sprintf(infname,argv[1],irun);
+      sprintf(outfname,argv[3],irun);
+      
+      f=fopen(infname,"r");
+      
+      if (f) {
+	while (cl.read(f)) {
+	  quad=interp->calcQuad(cl.get_cluster(), sum, totquad, sDum);
+	  if (sum>200 && sum<580) {
+	    interp->getInterpolatedPosition(cl.x,cl.y, totquad,quad,cl.get_cluster(),int_x, int_y);
+	    interp->addToImage(int_x, int_y);
+	  }
+	}
+	fclose(f);
+#ifdef FF
+	img=interp->getInterpolatedImage();
+	for (isx=0; isx<nsubpix; isx++) {
+	  for (isy=0; isy<nsubpix; isy++) {
+	    ff[isy*nsubpix+isx]=0;
+	  }
+	}
+	totff=0;
+	for (ix=0; ix<NC; ix++) {
+	  for (iy=0; iy<NR-100; iy++) {
+	    for (isx=0; isx<nsubpix; isx++) {
+	      for (isy=0; isy<nsubpix; isy++) {
+		ff[isy*nsubpix+isx]+=img[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)];
+	      }
+	    }
+	  }
+	}
+	
+	for (isx=0; isx<nsubpix; isx++) {
+	  for (isy=0; isy<nsubpix; isy++) {
+	    totff+=ff[isy*nsubpix+isx];
+	  }
+	}
+	totff/=nsubpix*nsubpix;
+
+
+	if (totff) {
+
+	  cout << "ff: " << totff << endl;
+
+	  for (isx=0; isx<nsubpix; isx++) {
+	    for (isy=0; isy<nsubpix; isy++) {
+	      ff[isy*nsubpix+isx]/=totff;
+	      cout << ff[isy*nsubpix+isx] << "\t";
+	    }
+	    cout << endl;
+	  }
+	  
+
+
+	  for (ix=0; ix<NC; ix++) {
+	    for (iy=0; iy<NR; iy++) {
+	      for (isx=0; isx<nsubpix; isx++) {
+		for (isy=0; isy<nsubpix; isy++) {
+		  ffimg[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)]=img[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)]/ff[isy*nsubpix+isx];
+		  totimg[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)]+=ffimg[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)];
+		}
+	      }
+	    }
+	  }
+	
+
+	  WriteToTiff(ffimg, outfname,NC*nsubpix,NR*nsubpix); 
+
+
+
+
+
+	}	    
+#endif
+#ifndef FF
+	interp->writeInterpolatedImage(outfname); 
+	img=interp->getInterpolatedImage();
+	  for (ix=0; ix<NC; ix++) {
+	    for (iy=0; iy<NR; iy++) {
+	      for (isx=0; isx<nsubpix; isx++) {
+		for (isy=0; isy<nsubpix; isy++) {
+		  totimg[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)]+=img[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)];
+		}
+	      }
+	    }
+	  }
+	
+#endif
+
+	interp->clearInterpolatedImage();
+
+      }
+    }
+
+
+    sprintf(outfname,argv[3],11111);
+    WriteToTiff(totimg, outfname,NC*nsubpix,NR*nsubpix); 
+    
+    return 0;
+}
+
diff --git a/slsDetectorCalibration/moenchExecutables/moench03MakeEta.cpp b/slsDetectorCalibration/moenchExecutables/moench03MakeEta.cpp
new file mode 100644
index 000000000..4f1119471
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/moench03MakeEta.cpp
@@ -0,0 +1,62 @@
+
+#include "ansi.h"
+#include <iostream>
+
+#include "moench03T1ZmqData.h"
+#include "single_photon_hit.h"
+
+ #include "etaInterpolationPosXY.h"
+
+using namespace std;
+#define NC 400
+#define NR 400
+
+
+int main(int argc, char *argv[]) {
+/**
+ * trial.o [socket ip] [starting port number] [outfname]
+ *
+ */
+  int nsubpix=10;
+  int etabins=nsubpix*100;
+  double etamin=-1, etamax=2;
+  int quad;
+  double sum, totquad;
+  double sDum[2][2];
+  char fname[10000];
+  double etax, etay;
+  int runmin, runmax;
+    single_photon_hit cl(3,3);
+
+  if (argc<5) {
+    cout << "Wrong usage! Should be: "<< argv[0] << " infile " << " outfile runmin runmax" << endl;
+    return 1;
+  }
+
+  etaInterpolationPosXY *interp=new etaInterpolationPosXY(NR, NC, nsubpix, etabins, etamin, etamax);
+  runmin=atoi(argv[3]);
+  runmax=atoi(argv[4]);
+  
+
+    FILE *f;
+    for (int i=runmin; i<runmax; i++) {
+	sprintf(fname,argv[1],i);
+      f=fopen(fname,"r");
+      if (f) {
+	cout << "*" << endl;
+	while (cl.read(f)) {
+	  interp->calcQuad(cl.get_cluster(), sum, totquad, sDum);
+	  if (sum>200 && sum<580 && cl.y<350)
+	    interp->addToFlatField(cl.get_cluster(),etax, etay);
+	}
+	fclose(f);
+	interp->writeFlatField(argv[2]);
+	
+      }
+      else cout << "could not open file " << fname << endl;
+    }
+    
+	interp->writeFlatField(argv[2]);
+    return 0;
+}
+
diff --git a/slsDetectorCalibration/moenchExecutables/moench03NoInterpolation.cpp b/slsDetectorCalibration/moenchExecutables/moench03NoInterpolation.cpp
new file mode 100644
index 000000000..9ff0ea900
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/moench03NoInterpolation.cpp
@@ -0,0 +1,171 @@
+
+#include "ansi.h"
+#include <iostream>
+
+#include "moench03T1ZmqData.h"
+#include "single_photon_hit.h"
+
+#include "noInterpolation.h"
+
+using namespace std;
+#define NC 400
+#define NR 400
+
+
+int main(int argc, char *argv[]) {
+/**
+ * trial.o [socket ip] [starting port number] [outfname]
+ *
+ */
+
+  if (argc<7) {
+    cout << "Wrong usage! Should be: "<< argv[0] << " infile " << " etafile outfile runmin runmax ns" << endl;
+    return 1;
+  }
+
+  char infname[10000];
+  char outfname[10000];
+  int runmin=atoi(argv[4]);
+  int runmax=atoi(argv[5]);
+  int nsubpix=atoi(argv[6]);
+  
+  int etabins=1000;//nsubpix*2*100;
+  double etamin=-1, etamax=2;
+  int quad;
+  double sum, totquad;
+  double sDum[2][2];
+  double etax, etay, int_x, int_y;
+  int ok;
+
+  int ix, iy, isx, isy;
+
+
+    FILE *f=NULL;
+
+    single_photon_hit cl(3,3);
+    // etaInterpolationPosXY *interp=new etaInterpolationPosXY(NC, NR, nsubpix, etabins, etamin, etamax);
+    noInterpolation *interp=new noInterpolation(NC, NR, nsubpix);
+    //  interp->readFlatField(argv[2]);
+    // interp->prepareInterpolation(ok);
+
+    int *img;
+    float *totimg=new float[NC*NR*nsubpix*nsubpix];
+    for (ix=0; ix<NC; ix++) {
+      for (iy=0; iy<NR; iy++) {
+	for (isx=0; isx<nsubpix; isx++) {
+	  for (isy=0; isy<nsubpix; isy++) {
+	    totimg[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)]=0;
+	      }
+	}
+      }
+    }
+#ifdef FF
+    
+    float ff[nsubpix*nsubpix];
+    float *ffimg=new float[NC*NR*nsubpix*nsubpix];
+    float totff=0;
+
+	
+#endif
+
+    for (int irun=runmin; irun<runmax; irun++) {
+      sprintf(infname,argv[1],irun);
+      sprintf(outfname,argv[3],irun);
+      
+      f=fopen(infname,"r");
+      
+      if (f) {
+	while (cl.read(f)) {
+	  quad=interp->calcQuad(cl.get_cluster(), sum, totquad, sDum);
+	  if (sum>200 && sum<580) {
+	    interp->getInterpolatedPosition(cl.x,cl.y, totquad,quad,cl.get_cluster(),int_x, int_y);
+	    interp->addToImage(int_x, int_y);
+	  }
+	}
+	fclose(f);
+#ifdef FF
+	img=interp->getInterpolatedImage();
+	for (isx=0; isx<nsubpix; isx++) {
+	  for (isy=0; isy<nsubpix; isy++) {
+	    ff[isy*nsubpix+isx]=0;
+	  }
+	}
+	totff=0;
+	for (ix=0; ix<NC; ix++) {
+	  for (iy=0; iy<NR-100; iy++) {
+	    for (isx=0; isx<nsubpix; isx++) {
+	      for (isy=0; isy<nsubpix; isy++) {
+		ff[isy*nsubpix+isx]+=img[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)];
+	      }
+	    }
+	  }
+	}
+	
+	for (isx=0; isx<nsubpix; isx++) {
+	  for (isy=0; isy<nsubpix; isy++) {
+	    totff+=ff[isy*nsubpix+isx];
+	  }
+	}
+	totff/=nsubpix*nsubpix;
+
+
+	if (totff) {
+
+	  cout << "ff: " << totff << endl;
+
+	  for (isx=0; isx<nsubpix; isx++) {
+	    for (isy=0; isy<nsubpix; isy++) {
+	      ff[isy*nsubpix+isx]/=totff;
+	      cout << ff[isy*nsubpix+isx] << "\t";
+	    }
+	    cout << endl;
+	  }
+	  
+
+
+	  for (ix=0; ix<NC; ix++) {
+	    for (iy=0; iy<NR; iy++) {
+	      for (isx=0; isx<nsubpix; isx++) {
+		for (isy=0; isy<nsubpix; isy++) {
+		  ffimg[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)]=img[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)]/ff[isy*nsubpix+isx];
+		  totimg[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)]+=ffimg[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)];
+		}
+	      }
+	    }
+	  }
+	
+
+	  WriteToTiff(ffimg, outfname,NC*nsubpix,NR*nsubpix); 
+
+
+
+
+
+	}	    
+#endif
+#ifndef FF
+	interp->writeInterpolatedImage(outfname); 
+	img=interp->getInterpolatedImage();
+	  for (ix=0; ix<NC; ix++) {
+	    for (iy=0; iy<NR; iy++) {
+	      for (isx=0; isx<nsubpix; isx++) {
+		for (isy=0; isy<nsubpix; isy++) {
+		  totimg[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)]+=img[ix*nsubpix+isx+(iy*nsubpix+isy)*(NC*nsubpix)];
+		}
+	      }
+	    }
+	  }
+	
+#endif
+
+	interp->clearInterpolatedImage();
+
+      }
+    }
+
+    sprintf(outfname,argv[3],11111);
+    WriteToTiff(totimg, outfname,NC*nsubpix,NR*nsubpix); 
+    
+    return 0;
+}
+
diff --git a/slsDetectorCalibration/moench03OnTheFlyAnalysis.C b/slsDetectorCalibration/moenchExecutables/moench03OnTheFlyAnalysis.C
similarity index 100%
rename from slsDetectorCalibration/moench03OnTheFlyAnalysis.C
rename to slsDetectorCalibration/moenchExecutables/moench03OnTheFlyAnalysis.C
diff --git a/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFly.cpp b/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFly.cpp
new file mode 100644
index 000000000..3b8d7c649
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFly.cpp
@@ -0,0 +1,272 @@
+#include "ZmqSocket.h"
+
+#include "ansi.h"
+#include <iostream>
+
+#include "moench03T1ZmqData.h"
+
+// #include "interpolatingDetector.h"
+//#include "etaInterpolationPosXY.h"
+// #include "linearInterpolation.h"
+// #include "noInterpolation.h"
+#include "multiThreadedAnalogDetector.h"
+#include "singlePhotonDetector.h"
+#include "interpolatingDetector.h"
+
+
+using namespace std;
+#define NC 400
+#define NR 400
+
+
+#define SLS_DETECTOR_JSON_HEADER_VERSION 0x2
+
+
+int main(int argc, char *argv[]) {
+/**
+ * trial.o [socket ip] [starting port number] [outfname]
+ *
+ */
+
+  int p=10000;
+  int fifosize=1000;
+  int nthreads=20;
+  int nsubpix=25;
+  int etabins=nsubpix*10;
+  double etamin=-1, etamax=2;
+  int csize=3;
+  int nx=400, ny=400;
+  int save=1;
+  int nsigma=5;
+  int nped=1000;
+  int ndark=100;
+  int ok;
+  int iprog=0;
+  char outfname[10000];
+
+
+  moench03T1ZmqData *decoder=new  moench03T1ZmqData();
+  // cout << "decoder "<< endl;
+  //etaInterpolationPosXY *interp=new etaInterpolationPosXY(nx, ny, nsubpix, etabins, etamin, etamax);
+  // linearInterpolation *interp=new linearInterpolation(NC, NR, nsubpix);
+  //noInterpolation *interp=new noInterpolation(NC, NR, nsubpix);
+  //interpolatingDetector *filter=new interpolatingDetector(decoder,interp, nsigma, 1, 0, nped, 100);
+     singlePhotonDetector *filter=new singlePhotonDetector(decoder,csize, nsigma, 1, 0, nped, 100);
+  char tit[10000];
+
+
+
+
+  // filter->readPedestals("/scratch/ped_100.tiff");
+  // interp->readFlatField("/scratch/eta_100.tiff",etamin,etamax);
+  // cout << "filter "<< endl;
+  
+
+	int size = 327680;////atoi(argv[3]);
+
+	char* buff;
+	int* image;
+	//int* image =new int[327680/sizeof(int)];
+  filter->newDataSet();
+
+
+
+  multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
+
+
+  //mt->setFrameMode(eFrame);
+  mt->setFrameMode(eFlat);
+  
+  // mt->setFrameMode(eFrame); //need to find a way to switch between flat and frames!
+  // mt->prepareInterpolation(ok);
+  mt->StartThreads();
+  mt->popFree(buff);
+
+
+	// help
+	if (argc < 2 || (argc > 2)) {
+	  cprintf(RED, "Help: %s [receive socket ip]\n", argv[0]);
+		return EXIT_FAILURE;
+	}
+
+	// receive parameters
+	bool send = false;
+	char* socketip = argv[1];
+	uint32_t portnum = 30001;//atoi(argv[2]);
+	//	char fn[10000];
+	//	strcpy(fn, argv[2]);
+	// send parameters if any
+	// char* socketip2 = 0;
+	// uint32_t portnum2 = 0;
+	// if (argc > 4) {
+	// 	send = true;
+	// 	socketip2 = argv[4];
+	// 	portnum2 = atoi(argv[5]);
+	// }
+	cout << "\nrx socket ip : " << socketip ; // <<
+	  // "\nrx port num  : " <<  portnum <<
+	//	"\nsize         : " <<  size;
+	// "\nfname  : " <<  fn ;
+	// if (send) {
+	// 	cout << "\nsd socket ip : " << socketip2 <<
+	// 			"\nsd port num  : " <<  portnum2;
+	// }
+	cout << endl;
+
+
+
+
+
+
+	// receive socket
+	ZmqSocket* zmqsocket = new ZmqSocket(socketip,portnum);
+	if (zmqsocket->IsError()) {
+		cprintf(RED, "Error: Could not create Zmq socket on port %d with ip %s\n", portnum, socketip);
+		delete zmqsocket;
+		return EXIT_FAILURE;
+	}
+	printf("Zmq Client at %s\n", zmqsocket->GetZmqServerAddress());
+
+	// send socket
+	// ZmqSocket* zmqsocket2 = 0;
+	// if (send) {
+	// 	zmqsocket2 = new ZmqSocket(portnum2, socketip2);
+	// 	if (zmqsocket2->IsError()) {
+	// 		bprintf(RED, "Error: Could not create Zmq socket server on port %d and ip %s\n",  portnum2, socketip2);
+	// 		delete zmqsocket2;
+	// 		delete zmqsocket;
+	// 		return EXIT_FAILURE;
+	// 	}
+	// 	printf("Zmq Server started at %s\n", zmqsocket2->GetZmqServerAddress());
+	// }
+
+
+	//	cout << "size " <<  327680/sizeof(int) << endl;
+
+	// header variables
+	uint64_t acqIndex = -1;
+	uint64_t frameIndex = -1;
+	uint32_t subframeIndex = -1;
+	string filename = "";
+	int nnx, nny, nns;
+	int imsize=filter->getImageSize(nnx,nny,nns);
+	//int imsize=nx*ny;
+	int i_image=0;
+	cout << "Image size is "<< nnx << " " << nny << " " << nns << " " << imsize << endl;
+	int iframe=0;
+	int ff=0;
+	
+	// infinite loop
+	while(1) {
+
+
+	  //	cprintf(GREEN, "Got ?\n");
+		// get header, (if dummy, fail is on parse error or end of acquisition)
+		if (!zmqsocket->ReceiveHeader(0, acqIndex, frameIndex, subframeIndex, filename)) {
+		  cprintf(RED, "Acquisition finished\n");
+
+			
+
+		  cout << "Received " << ff <<  " frames for a total of "<< iframe << endl;
+			while (mt->isBusy()) {;}//wait until all data are processed from the queues
+			
+			// stream dummy  to socket2 to signal end of acquisition
+			// if (send) {	
+			//   zmqsocket2->SendData((char*)(mt->getImage()),imsize*sizeof(int));
+			//   cprintf(BLUE, "Sent Interpolated image\n");
+			// 	// zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
+			// 	// cprintf(RED, "Sent Dummy\n");
+			// }
+			//	if (save) {
+			sprintf(tit,"%s_%05d.tiff",filename.c_str(), ff);
+			//	cout << tit << endl;
+			 mt->writeImage(tit);
+				 mt->clearImage();
+			   //	}
+			// sprintf(tit,"%s_%05d_eta_i.tiff",filename.c_str(), ff);
+			// interp->writeFlatField(tit);
+			// sprintf(tit,"%s_%05d_eta.tiff",filename.c_str(), ff);
+			// cout << tit << endl;
+			// mt->writeFlatField(tit);
+
+			i_image++;
+			ff=0;
+			// dont get data
+			continue; //continue to not get out
+		}
+
+		if (ff==0)
+		  cprintf(GREEN, "Start acquisition \n");
+		  //	  cout << filename << endl;
+		//	cprintf(GREEN, "Got Header \n");
+		// get data
+		//	cprintf(GREEN, "Got Header\n");
+		//image=(int*)buff;
+		//cout << buff << endl;
+		int length = zmqsocket->ReceiveData(0, (int*)buff, size);
+		//	int length = zmqsocket->ReceiveData(0, (int*)image, size);
+		//	cprintf(GREEN, "Got Data\n");
+
+		//processing with image
+		//...
+
+
+
+
+		mt->pushData(buff);
+		mt->nextThread();
+		//	cout << " " << (void*)buff;
+		mt->popFree(buff);
+		
+		
+		iframe++;
+		ff++;
+		//  if (iframe%p==0) {
+		  
+		//   while (mt->isBusy()) {;}//wait until all data are processed from the queues 
+		//   sprintf(tit,"tmp.tiff",filename.c_str(), i_image);
+		//   mt->writeImage(tit);
+		//   // mt->clearImage();
+		//   //	}
+		//   //interp->writeFlatField(tit);
+		//   //  i_image++;
+		//   //   sprintf(tit,"%s_tmp.tiff",fn);
+		// //   mt->writeImage(tit);
+		// //   //mt->clearImage();
+		  
+		// //   cout <<"*"<< iprog++ << endl;
+		  
+		//  }
+
+
+
+
+
+
+
+
+
+		// //stream data from socket 2
+		// if (send) {
+		// 	zmqsocket2->SendHeaderData(0, false, SLS_DETECTOR_JSON_HEADER_VERSION,
+		// 			0,0,0,acqIndex,frameIndex,(char*)"run", acqIndex, 0,0,0,0,0,0,0,0,0,0,0,1);
+		// 	cprintf(GREEN, "Sent Header\n");
+
+		// 	zmqsocket2->SendData((char*)image,length);
+		// 	cprintf(GREEN, "Sent Data\n");
+		// }
+
+
+	}// exiting infinite loop
+
+
+
+	delete zmqsocket;
+	// if (send)
+	// 	delete zmqsocket2;
+
+
+	//	cout<<"Goodbye"<<  endl;
+	return 0;
+}
+
diff --git a/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlyEta.cpp b/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlyEta.cpp
new file mode 100644
index 000000000..f8ee9c694
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlyEta.cpp
@@ -0,0 +1,306 @@
+#include "ZmqSocket.h"
+
+#include "ansi.h"
+#include <iostream>
+
+#include "moench03T1ZmqData.h"
+
+// #include "interpolatingDetector.h"
+ #include "etaInterpolationPosXY.h"
+// #include "linearInterpolation.h"
+// #include "noInterpolation.h"
+#include "multiThreadedAnalogDetector.h"
+#include "singlePhotonDetector.h"
+#include "interpolatingDetector.h"
+
+
+using namespace std;
+#define NC 400
+#define NR 400
+
+
+#define SLS_DETECTOR_JSON_HEADER_VERSION 0x2
+
+
+int main(int argc, char *argv[]) {
+/**
+ * trial.o [socket ip] [starting port number] [outfname]
+ *
+ */
+
+  int p=1000; //1.5s with 15ms period
+  int fifosize=1000;
+  int nthreads=8;
+  int nsubpix=2;
+  int etabins=nsubpix*10;
+  double etamin=-1, etamax=2;
+  int csize=3;
+  int nx=400, ny=400;
+  int save=1;
+  int nsigma=5;
+  int nped=1000;
+  int ndark=100;
+  int ok;
+  int iprog=0;
+  char outfname[10000];
+
+  if (nsubpix>2) p=5000;
+
+
+  moench03T1ZmqData *decoder=new  moench03T1ZmqData();
+  // cout << "decoder "<< endl;
+  etaInterpolationPosXY *interp=new etaInterpolationPosXY(nx, ny, nsubpix, etabins, etamin, etamax);
+  // linearInterpolation *interp=new linearInterpolation(NC, NR, nsubpix);
+  //noInterpolation *interp=new noInterpolation(NC, NR, nsubpix);
+  interpolatingDetector *filter=new interpolatingDetector(decoder,interp, nsigma, 1, 0, nped, 100);
+  //   singlePhotonDetector *filter=new singlePhotonDetector(decoder,csize, nsigma, 1, 0, nped, 100);
+  char tit[10000];
+
+
+
+
+  // filter->readPedestals("/scratch/ped_100.tiff");
+  // interp->readFlatField("/scratch/eta_100.tiff",etamin,etamax);
+  // cout << "filter "<< endl;
+  
+
+	int size = 327680;////atoi(argv[3]);
+
+	char* buff;
+	int* image;
+	//int* image =new int[327680/sizeof(int)];
+  filter->newDataSet();
+
+
+
+  multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
+
+
+  //
+  if (nsubpix>2)
+    mt->setFrameMode(eFlat);
+  else
+    mt->setFrameMode(eFrame);
+
+  // mt->setFrameMode(eFrame); //need to find a way to switch between flat and frames!
+  // mt->prepareInterpolation(ok);
+  mt->StartThreads();
+  mt->popFree(buff);
+
+
+	// help
+	if (argc < 2 || (argc > 2)) {
+	  cprintf(RED, "Help: %s [receive socket ip]\n", argv[0]);
+		return EXIT_FAILURE;
+	}
+
+	// receive parameters
+	bool send = false;
+	char* socketip = argv[1];
+	uint32_t portnum = 30001;//atoi(argv[2]);
+	//	char fn[10000];
+	//	strcpy(fn, argv[2]);
+	// send parameters if any
+	// char* socketip2 = 0;
+	// uint32_t portnum2 = 0;
+	// if (argc > 4) {
+	// 	send = true;
+	// 	socketip2 = argv[4];
+	// 	portnum2 = atoi(argv[5]);
+	// }
+	cout << "\nrx socket ip : " << socketip ; // <<
+	  // "\nrx port num  : " <<  portnum <<
+	//	"\nsize         : " <<  size;
+	// "\nfname  : " <<  fn ;
+	// if (send) {
+	// 	cout << "\nsd socket ip : " << socketip2 <<
+	// 			"\nsd port num  : " <<  portnum2;
+	// }
+	cout << endl;
+
+
+
+
+
+
+	// receive socket
+	ZmqSocket* zmqsocket = new ZmqSocket(socketip,portnum);
+	if (zmqsocket->IsError()) {
+		cprintf(RED, "Error: Could not create Zmq socket on port %d with ip %s\n", portnum, socketip);
+		delete zmqsocket;
+		return EXIT_FAILURE;
+	}
+	printf("Zmq Client at %s\n", zmqsocket->GetZmqServerAddress());
+
+	// send socket
+	// ZmqSocket* zmqsocket2 = 0;
+	// if (send) {
+	// 	zmqsocket2 = new ZmqSocket(portnum2, socketip2);
+	// 	if (zmqsocket2->IsError()) {
+	// 		bprintf(RED, "Error: Could not create Zmq socket server on port %d and ip %s\n",  portnum2, socketip2);
+	// 		delete zmqsocket2;
+	// 		delete zmqsocket;
+	// 		return EXIT_FAILURE;
+	// 	}
+	// 	printf("Zmq Server started at %s\n", zmqsocket2->GetZmqServerAddress());
+	// }
+
+
+	//	cout << "size " <<  327680/sizeof(int) << endl;
+
+	// header variables
+	uint64_t acqIndex = -1;
+	uint64_t frameIndex = -1;
+	uint32_t subframeIndex = -1;
+	string filename = "";
+	int nnx, nny, nns;
+	int imsize=filter->getImageSize(nnx,nny,nns);
+	//int imsize=nx*ny;
+	int i_image=0;
+	cout << "Image size is "<< nnx << " " << nny << " " << nns << " " << imsize << endl;
+	int iframe=0;
+	int ff=0;
+	
+	// infinite loop
+	while(1) {
+
+
+	  //	cprintf(GREEN, "Got ?\n");
+		// get header, (if dummy, fail is on parse error or end of acquisition)
+		if (!zmqsocket->ReceiveHeader(0, acqIndex, frameIndex, subframeIndex, filename)) {
+		  cprintf(RED, "Acquisition finished\n");
+
+			
+
+		  cout << "Received " << ff <<  " frames for a total of "<< iframe << endl;
+			while (mt->isBusy()) {;}//wait until all data are processed from the queues
+			
+			// stream dummy  to socket2 to signal end of acquisition
+			// if (send) {	
+			//   zmqsocket2->SendData((char*)(mt->getImage()),imsize*sizeof(int));
+			//   cprintf(BLUE, "Sent Interpolated image\n");
+			// 	// zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
+			// 	// cprintf(RED, "Sent Dummy\n");
+			// }
+			//	if (save) {
+			//	if (iframe>p) {
+			sprintf(tit,"%s_%05d_%05d.tiff",filename.c_str(), ff, i_image);
+			  cout << tit << endl;
+			  mt->writeImage(tit);
+			  sprintf(tit,"/home/l_msdetect/slsbl/x07mb/x07mbop/Data1/2017/11/06/tmp.tiff");
+			  cout <<"*"<< iframe<< endl;
+			  mt->writeImage(tit);
+			  mt->clearImage();
+			  //}
+			
+
+
+			   //	}
+				 //sprintf(tit,"%s_%05d_eta_i.tiff",filename.c_str(), ff);
+			//interp->writeFlatField(tit);
+			// sprintf(tit,"%s_%05d_eta_%d.tiff",filename.c_str(), ff, acqIndex);
+			// //  cout << tit << endl;
+			//   mt->writeFlatField(tit);
+
+			i_image++;
+			ff=0;
+			//filter->newDataSet();
+
+			// dont get data
+			continue; //continue to not get out
+		}
+
+		if (ff==0) 
+		  cprintf(GREEN, "Start acquisition %d\n",acqIndex);
+		  //	  cout << filename << endl;
+		//	cprintf(GREEN, "Got Header \n");
+		// get data
+		//	cprintf(GREEN, "Got Header\n");
+		//image=(int*)buff;
+		//cout << buff << endl;
+		int length = zmqsocket->ReceiveData(0, (int*)buff, size);
+		//	int length = zmqsocket->ReceiveData(0, (int*)image, size);
+		//	cprintf(GREEN, "Got Data\n");
+
+		//processing with image
+		//...
+
+
+
+
+		mt->pushData(buff);
+		mt->nextThread();
+		//	cout << " " << (void*)buff;
+		mt->popFree(buff);
+		
+		
+		iframe++;
+		if (nsubpix>2) {
+		  if (iframe==p) {
+		    mt->setFrameMode(eFrame);
+		    mt->prepareInterpolation(ok);
+		    
+		    sprintf(tit,"%s_%05d_eta.tiff",filename.c_str(), ff);
+		    cout << tit << endl;
+		    mt->writeFlatField(tit);
+		  }
+		} //else {
+		//	cout << iframe << " " << p << endl;
+		  if (iframe%p==0) {	
+		    while (mt->isBusy()) {;}//wait until all data are processed from the queues
+		    sprintf(tit,"/home/l_msdetect/slsbl/x07mb/x07mbop/Data1/2017/11/06/tmp.tiff");
+		    cout <<"*"<< iframe<< endl;
+		    mt->writeImage(tit);
+		    //   mt->clearImage();
+		  }
+		  //}
+		ff++;
+		//  if (iframe%p==0) {
+		  
+		//   while (mt->isBusy()) {;}//wait until all data are processed from the queues 
+		//   sprintf(tit,"tmp.tiff",filename.c_str(), i_image);
+		//   mt->writeImage(tit);
+		//   // mt->clearImage();
+		//   //	}
+		//   //interp->writeFlatField(tit);
+		//   //  i_image++;
+		//   //   sprintf(tit,"%s_tmp.tiff",fn);
+		// //   mt->writeImage(tit);
+		// //   //mt->clearImage();
+		  
+		// //   cout <<"*"<< iprog++ << endl;
+		  
+		//  }
+
+
+
+
+
+
+
+
+
+		// //stream data from socket 2
+		// if (send) {
+		// 	zmqsocket2->SendHeaderData(0, false, SLS_DETECTOR_JSON_HEADER_VERSION,
+		// 			0,0,0,acqIndex,frameIndex,(char*)"run", acqIndex, 0,0,0,0,0,0,0,0,0,0,0,1);
+		// 	cprintf(GREEN, "Sent Header\n");
+
+		// 	zmqsocket2->SendData((char*)image,length);
+		// 	cprintf(GREEN, "Sent Data\n");
+		// }
+
+
+	}// exiting infinite loop
+
+
+
+	delete zmqsocket;
+	// if (send)
+	// 	delete zmqsocket2;
+
+
+	//	cout<<"Goodbye"<<  endl;
+	return 0;
+}
+
diff --git a/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlyInterpolating.cpp b/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlyInterpolating.cpp
new file mode 100644
index 000000000..58527705a
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlyInterpolating.cpp
@@ -0,0 +1,251 @@
+#include "ZmqSocket.h"
+
+#include "ansi.h"
+#include <iostream>
+
+#include "moench03T1ZmqData.h"
+
+// #include "interpolatingDetector.h"
+ #include "etaInterpolationPosXY.h"
+// #include "linearInterpolation.h"
+// #include "noInterpolation.h"
+#include "multiThreadedAnalogDetector.h"
+//#include "singlePhotonDetector.h"
+#include "interpolatingDetector.h"
+
+
+using namespace std;
+#define NC 400
+#define NR 400
+
+
+#define SLS_DETECTOR_JSON_HEADER_VERSION 0x2
+
+
+int main(int argc, char *argv[]) {
+/**
+ * trial.o [socket ip] [starting port number] [outfname]
+ *
+ */
+
+  int p=1000;
+  int fifosize=1000;
+  int nthreads=6;
+  int nsubpix=25;
+  int etabins=nsubpix*10;
+  double etamin=-1, etamax=2;
+  int csize=3;
+  int nx=400, ny=400;
+  int save=1;
+  int nsigma=5;
+  int nped=1000;
+  int ndark=100;
+  int ok;
+  int iprog=0;
+  char outfname[10000];
+
+
+  moench03T1ZmqData *decoder=new  moench03T1ZmqData();
+  // cout << "decoder "<< endl;
+  etaInterpolationPosXY *interp=new etaInterpolationPosXY(nx, ny, nsubpix, etabins, etamin, etamax);
+  // linearInterpolation *interp=new linearInterpolation(NC, NR, nsubpix);
+  //noInterpolation *interp=new noInterpolation(NC, NR, nsubpix);
+  // interpolatingDetector *filter=new interpolatingDetector(decoder,interp, nsigma, 1, 0, nped, 100);
+     singlePhotonDetector *filter=new singlePhotonDetector(decoder,csize, nsigma, 1, 0, nped, 100);
+  char tit[10000];
+
+
+
+
+  // filter->readPedestals("/scratch/ped_100.tiff");
+  // interp->readFlatField("/scratch/eta_100.tiff",etamin,etamax);
+  // cout << "filter "<< endl;
+  
+
+	int size = 327680;////atoi(argv[3]);
+
+	char* buff;
+	int* image;
+	//int* image =new int[327680/sizeof(int)];
+  filter->newDataSet();
+
+
+
+  multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
+
+
+ mt->setFrameMode(eFrame);
+  // mt->setFrameMode(eFrame); //need to find a way to switch between flat and frames!
+  // mt->prepareInterpolation(ok);
+  mt->StartThreads();
+  mt->popFree(buff);
+
+
+	// help
+	if (argc < 3 || (argc > 3)) {
+	  cprintf(RED, "Help: %s [receive socket ip] [fname]\n", argv[0]);
+		return EXIT_FAILURE;
+	}
+
+	// receive parameters
+	bool send = false;
+	char* socketip = argv[1];
+	uint32_t portnum = 30001;//atoi(argv[2]);
+	char fn[10000];
+	strcpy(fn, argv[2]);
+	// send parameters if any
+	// char* socketip2 = 0;
+	// uint32_t portnum2 = 0;
+	// if (argc > 4) {
+	// 	send = true;
+	// 	socketip2 = argv[4];
+	// 	portnum2 = atoi(argv[5]);
+	// }
+	cout << "\nrx socket ip : " << socketip <<
+	  // "\nrx port num  : " <<  portnum <<
+	//	"\nsize         : " <<  size;
+	  "\nfname  : " <<  fn ;
+	// if (send) {
+	// 	cout << "\nsd socket ip : " << socketip2 <<
+	// 			"\nsd port num  : " <<  portnum2;
+	// }
+	cout << endl;
+
+
+
+
+
+
+	// receive socket
+	ZmqSocket* zmqsocket = new ZmqSocket(socketip,portnum);
+	if (zmqsocket->IsError()) {
+		cprintf(RED, "Error: Could not create Zmq socket on port %d with ip %s\n", portnum, socketip);
+		delete zmqsocket;
+		return EXIT_FAILURE;
+	}
+	printf("Zmq Client at %s\n", zmqsocket->GetZmqServerAddress());
+
+	// send socket
+	// ZmqSocket* zmqsocket2 = 0;
+	// if (send) {
+	// 	zmqsocket2 = new ZmqSocket(portnum2, socketip2);
+	// 	if (zmqsocket2->IsError()) {
+	// 		bprintf(RED, "Error: Could not create Zmq socket server on port %d and ip %s\n",  portnum2, socketip2);
+	// 		delete zmqsocket2;
+	// 		delete zmqsocket;
+	// 		return EXIT_FAILURE;
+	// 	}
+	// 	printf("Zmq Server started at %s\n", zmqsocket2->GetZmqServerAddress());
+	// }
+
+
+	cout << "size " <<  327680/sizeof(int) << endl;
+
+	// header variables
+	uint64_t acqIndex = -1;
+	uint64_t frameIndex = -1;
+	uint32_t subframeIndex = -1;
+	string filename = "";
+	int nnx, nny, nns;
+	int imsize=filter->getImageSize(nnx,nny,nns);
+	//int imsize=nx*ny;
+	int i_image=0;
+	cout << "Image size is "<< nnx << " " << nny << " " << nns << " " << imsize << endl;
+	int iframe=0;
+
+	// infinite loop
+	while(1) {
+
+
+	  //	cprintf(GREEN, "Got ?\n");
+		// get header, (if dummy, fail is on parse error or end of acquisition)
+		if (!zmqsocket->ReceiveHeader(0, acqIndex, frameIndex, subframeIndex, filename)) {
+			cprintf(RED, "Acquisition finished\n");
+
+			
+
+			cout << "Recieved " << iframe << " frames " << endl;
+			while (mt->isBusy()) {;}//wait until all data are processed from the queues
+			
+			// stream dummy  to socket2 to signal end of acquisition
+			// if (send) {	
+			//   zmqsocket2->SendData((char*)(mt->getImage()),imsize*sizeof(int));
+			//   cprintf(BLUE, "Sent Interpolated image\n");
+			// 	// zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
+			// 	// cprintf(RED, "Sent Dummy\n");
+			// }
+			//	if (save) {
+			 sprintf(tit,"%s_%d.tiff",fn, i_image);
+			 mt->writeImage(tit);
+			 mt->clearImage();
+			   //	}
+			 //interp->writeFlatField(tit);
+			i_image++;
+			// dont get data
+			continue; //continue to not get out
+		}
+		//	cprintf(GREEN, "Got Header \n");
+		// get data
+		//	cprintf(GREEN, "Got Header\n");
+		//image=(int*)buff;
+		//cout << buff << endl;
+		int length = zmqsocket->ReceiveData(0, (int*)buff, size);
+		//	int length = zmqsocket->ReceiveData(0, (int*)image, size);
+		//	cprintf(GREEN, "Got Data\n");
+
+		//processing with image
+		//...
+
+
+
+
+		mt->pushData(buff);
+		mt->nextThread();
+		//	cout << " " << (void*)buff;
+		mt->popFree(buff);
+		
+		
+		iframe++;
+		// if (iframe%p==0) {
+		  
+		//   while (mt->isBusy()) {;}//wait until all data are processed from the queues
+		//   sprintf(tit,"%s_tmp.tiff",fn);
+		//   mt->writeImage(tit);
+		//   //mt->clearImage();
+		  
+		//   cout <<"*"<< iprog++ << endl;
+		  
+		// }
+
+
+
+
+
+
+
+
+
+		// //stream data from socket 2
+		// if (send) {
+		// 	zmqsocket2->SendHeaderData(0, false, SLS_DETECTOR_JSON_HEADER_VERSION,
+		// 			0,0,0,acqIndex,frameIndex,(char*)"run", acqIndex, 0,0,0,0,0,0,0,0,0,0,0,1);
+		// 	cprintf(GREEN, "Sent Header\n");
+
+		// 	zmqsocket2->SendData((char*)image,length);
+		// 	cprintf(GREEN, "Sent Data\n");
+		// }
+
+
+	}// exiting infinite loop
+
+
+
+	delete zmqsocket;
+	// if (send)
+	// 	delete zmqsocket2;
+
+
+	//	cout<<"Goodbye"<<  endl;
+	return 0;
+}
+
diff --git a/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlyInterpolation.cpp b/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlyInterpolation.cpp
new file mode 100644
index 000000000..a2b1cb11d
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlyInterpolation.cpp
@@ -0,0 +1,219 @@
+#include "ZmqSocket.h"
+
+#include "ansi.h"
+#include <iostream>
+
+#include "moench03T1ZmqData.h"
+
+#include "interpolatingDetector.h"
+#include "etaInterpolationPosXY.h"
+#include "linearInterpolation.h"
+#include "noInterpolation.h"
+#include "multiThreadedDetector.h"
+
+using namespace std;
+
+
+#define SLS_DETECTOR_JSON_HEADER_VERSION 0x2
+
+
+int main(int argc, char *argv[]) {
+/**
+ * trial.o [socket ip] [starting port number] [image size] [send_socket ip] [send port number]
+ *
+ */
+
+
+
+  int nthreads=3;
+  int nsubpix=5;
+  int etabins=550;
+  double etamin=-1, etamax=2;
+  int nx=400, ny=400;
+  int save=1;
+  int nsigma=5;
+  int nped=1000;
+  int ok;
+  //int* image = new int[(size/sizeof(int))]();
+  char* buff;
+
+  moench03T1ZmqData *decoder=new  moench03T1ZmqData();
+  // cout << "decoder "<< endl;
+  etaInterpolationPosXY *interp=new etaInterpolationPosXY(nx, ny, nsubpix, etabins, etamin, etamax);
+  //linearInterpolation *interp=new linearInterpolation(NC, NR, nsubpix);
+  //noInterpolation *interp=new noInterpolation(NC, NR, nsubpix);
+  interpolatingDetector *filter=new interpolatingDetector(decoder,interp, nsigma, 1, 0, nped, 10);
+
+
+
+
+  filter->readPedestals("/scratch/ped_100.tiff");
+  interp->readFlatField("/scratch/eta_100.tiff",etamin,etamax);
+  cout << "filter "<< endl;
+  
+
+
+  filter->newDataSet();
+
+
+
+  multiThreadedDetector *mt=new multiThreadedDetector(filter,nthreads,100);
+
+
+
+  mt->setFrameMode(eFrame); //need to find a way to switch between flat and frames!
+  mt->prepareInterpolation(ok);
+  mt->StartThreads();
+  mt->popFree(buff);
+
+
+	// help
+	if (argc < 4 || (argc > 4 && argc != 6)) {
+		cprintf(RED, "Help: ./trial [receive socket ip] [receive starting port number] [image size]  [send_socket ip] [send starting port number]\n");
+		return EXIT_FAILURE;
+	}
+
+	// receive parameters
+	bool send = false;
+	char* socketip = argv[1];
+	uint32_t portnum = atoi(argv[2]);
+	int size = atoi(argv[3]);
+
+	// send parameters if any
+	char* socketip2 = 0;
+	uint32_t portnum2 = 0;
+	if (argc > 4) {
+		send = true;
+		socketip2 = argv[4];
+		portnum2 = atoi(argv[5]);
+	}
+	cout << "\nrx socket ip : " << socketip <<
+			"\nrx port num  : " <<  portnum <<
+			"\nsize         : " <<  size;
+	if (send) {
+		cout << "\nsd socket ip : " << socketip2 <<
+				"\nsd port num  : " <<  portnum2;
+	}
+	cout << endl;
+
+
+
+
+
+
+	// receive socket
+	ZmqSocket* zmqsocket = new ZmqSocket(socketip,portnum);
+	if (zmqsocket->IsError()) {
+		cprintf(RED, "Error: Could not create Zmq socket on port %d with ip %s\n", portnum, socketip);
+		delete zmqsocket;
+		return EXIT_FAILURE;
+	}
+	printf("Zmq Client at %s\n", zmqsocket->GetZmqServerAddress());
+
+	// send socket
+	ZmqSocket* zmqsocket2 = 0;
+	if (send) {
+		zmqsocket2 = new ZmqSocket(portnum2, socketip2);
+		if (zmqsocket2->IsError()) {
+			bprintf(RED, "Error: Could not create Zmq socket server on port %d and ip %s\n",  portnum2, socketip2);
+			delete zmqsocket2;
+			delete zmqsocket;
+			return EXIT_FAILURE;
+		}
+		printf("Zmq Server started at %s\n", zmqsocket2->GetZmqServerAddress());
+	}
+
+
+
+
+	// header variables
+	uint64_t acqIndex = -1;
+	uint64_t frameIndex = -1;
+	uint32_t subframeIndex = -1;
+	string filename = "";
+	int imsize=nx*ny*nsubpix*nsubpix;
+	int i_image=0;
+
+	// infinite loop
+	while(1) {
+
+
+		// get header, (if dummy, fail is on parse error or end of acquisition)
+		if (!zmqsocket->ReceiveHeader(0, acqIndex, frameIndex, subframeIndex, filename)) {
+			cprintf(RED, "Acquisition finished\n");
+
+
+
+			while (mt->isBusy()) {;}//wait until all data are processed from the queues
+			
+			
+			// stream dummy  to socket2 to signal end of acquisition
+			if (send) {	
+			  zmqsocket2->SendData((char*)(mt->getInterpolatedImage()),imsize*sizeof(int));
+			  cprintf(BLUE, "Sent Interpolated image\n");
+				// zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
+				// cprintf(RED, "Sent Dummy\n");
+			}
+			if (save) {
+			   char tit[10000];
+			   sprintf(tit,"/scratch/int_image_%d.tiff",i_image);
+			   mt->writeInterpolatedImage(tit);
+			   mt->clearInterpolatedImage(tit);
+			}
+			i_image++;
+			// dont get data
+			break; //continue to not get out
+		}
+		cprintf(GREEN, "Got Header \n");
+		// get data
+		int length = zmqsocket->ReceiveData(0, (int*)buff, size);
+		cprintf(GREEN, "Got Data\n");
+
+		//processing with image
+		//...
+
+
+
+
+
+	mt->pushData(buff);
+	mt->nextThread();
+	//	cout << " " << (void*)buff;
+	mt->popFree(buff);
+
+
+
+
+
+
+
+
+
+
+
+
+
+		// //stream data from socket 2
+		// if (send) {
+		// 	zmqsocket2->SendHeaderData(0, false, SLS_DETECTOR_JSON_HEADER_VERSION,
+		// 			0,0,0,acqIndex,frameIndex,(char*)"run", acqIndex, 0,0,0,0,0,0,0,0,0,0,0,1);
+		// 	cprintf(GREEN, "Sent Header\n");
+
+		// 	zmqsocket2->SendData((char*)image,length);
+		// 	cprintf(GREEN, "Sent Data\n");
+		// }
+
+
+	}// exiting infinite loop
+
+
+
+	delete zmqsocket;
+	if (send)
+		delete zmqsocket2;
+
+
+	cout<<"Goodbye"<<  endl;
+	return 0;
+}
+
diff --git a/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlySinglePhoton.cpp b/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlySinglePhoton.cpp
new file mode 100644
index 000000000..b65d4fddf
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/moench03ZmqOnTheFlySinglePhoton.cpp
@@ -0,0 +1,248 @@
+#include "ZmqSocket.h"
+
+#include "ansi.h"
+#include <iostream>
+
+#include "moench03T1ZmqData.h"
+
+// #include "interpolatingDetector.h"
+// #include "etaInterpolationPosXY.h"
+ #include "linearInterpolation.h"
+// #include "noInterpolation.h"
+#include "multiThreadedAnalogDetector.h"
+//#include "singlePhotonDetector.h"
+#include "interpolatingDetector.h"
+
+
+using namespace std;
+#define NC 400
+#define NR 400
+
+
+#define SLS_DETECTOR_JSON_HEADER_VERSION 0x2
+
+
+int main(int argc, char *argv[]) {
+/**
+ * trial.o [socket ip] [starting port number] [outfname]
+ *
+ */
+
+  int p=1000;
+  int fifosize=1000;
+  int nthreads=6;
+  int nsubpix=2;
+  // int etabins=550;
+  // double etamin=-1, etamax=2;
+  int csize=3;
+  int nx=400, ny=400;
+  int save=1;
+  int nsigma=5;
+  int nped=1000;
+  int ndark=100;
+  int ok;
+  //int* image = new int[(size/sizeof(int))]();
+  char* buff;
+  int iprog=0;
+  char outfname[10000];
+
+
+  moench03T1ZmqData *decoder=new  moench03T1ZmqData();
+  // cout << "decoder "<< endl;
+  //etaInterpolationPosXY *interp=new etaInterpolationPosXY(nx, ny, nsubpix, etabins, etamin, etamax);
+  // linearInterpolation *interp=new linearInterpolation(NC, NR, nsubpix);
+  //noInterpolation *interp=new noInterpolation(NC, NR, nsubpix);
+  // interpolatingDetector *filter=new interpolatingDetector(decoder,interp, nsigma, 1, 0, nped, 10);
+    singlePhotonDetector *filter=new singlePhotonDetector(decoder,csize, nsigma, 1, 0, nped, 100);
+  char tit[10000];
+
+
+
+
+  // filter->readPedestals("/scratch/ped_100.tiff");
+  // interp->readFlatField("/scratch/eta_100.tiff",etamin,etamax);
+  // cout << "filter "<< endl;
+  
+
+
+  filter->newDataSet();
+
+
+
+  multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
+
+
+
+  mt->setFrameMode(eFrame); //need to find a way to switch between flat and frames!
+  // mt->prepareInterpolation(ok);
+  mt->StartThreads();
+  mt->popFree(buff);
+
+
+	// help
+	if (argc < 4 || (argc > 4 && argc != 6)) {
+	  cprintf(RED, "Help: %s [receive socket ip] [receive starting port number] [fname]\n", argv[0]);
+		return EXIT_FAILURE;
+	}
+
+	// receive parameters
+	bool send = false;
+	char* socketip = argv[1];
+	uint32_t portnum = atoi(argv[2]);
+	int size = 327680;////atoi(argv[3]);
+
+	char fn[10000];
+	strcpy(fn, argv[3]);
+	// send parameters if any
+	// char* socketip2 = 0;
+	// uint32_t portnum2 = 0;
+	// if (argc > 4) {
+	// 	send = true;
+	// 	socketip2 = argv[4];
+	// 	portnum2 = atoi(argv[5]);
+	// }
+	cout << "\nrx socket ip : " << socketip <<
+	  "\nrx port num  : " <<  portnum <<
+	//	"\nsize         : " <<  size;
+	  "\nfname  : " <<  fn ;
+	// if (send) {
+	// 	cout << "\nsd socket ip : " << socketip2 <<
+	// 			"\nsd port num  : " <<  portnum2;
+	// }
+	cout << endl;
+
+
+
+
+
+
+	// receive socket
+	ZmqSocket* zmqsocket = new ZmqSocket(socketip,portnum);
+	if (zmqsocket->IsError()) {
+		cprintf(RED, "Error: Could not create Zmq socket on port %d with ip %s\n", portnum, socketip);
+		delete zmqsocket;
+		return EXIT_FAILURE;
+	}
+	printf("Zmq Client at %s\n", zmqsocket->GetZmqServerAddress());
+
+	// send socket
+	// ZmqSocket* zmqsocket2 = 0;
+	// if (send) {
+	// 	zmqsocket2 = new ZmqSocket(portnum2, socketip2);
+	// 	if (zmqsocket2->IsError()) {
+	// 		bprintf(RED, "Error: Could not create Zmq socket server on port %d and ip %s\n",  portnum2, socketip2);
+	// 		delete zmqsocket2;
+	// 		delete zmqsocket;
+	// 		return EXIT_FAILURE;
+	// 	}
+	// 	printf("Zmq Server started at %s\n", zmqsocket2->GetZmqServerAddress());
+	// }
+
+
+
+
+	// header variables
+	uint64_t acqIndex = -1;
+	uint64_t frameIndex = -1;
+	uint32_t subframeIndex = -1;
+	string filename = "";
+	int nnx, nny, nns;
+	int imsize=filter->getImageSize(nnx,nny,nns);
+	//int imsize=nx*ny;
+	int i_image=0;
+
+	int iframe=0;
+
+	// infinite loop
+	while(1) {
+
+
+		// get header, (if dummy, fail is on parse error or end of acquisition)
+		if (!zmqsocket->ReceiveHeader(0, acqIndex, frameIndex, subframeIndex, filename)) {
+			cprintf(RED, "Acquisition finished\n");
+
+			
+
+			cout << "Recieved " << iframe << " frames " << endl;
+			while (mt->isBusy()) {;}//wait until all data are processed from the queues
+			cout << "threads done " << endl;
+			
+			// stream dummy  to socket2 to signal end of acquisition
+			// if (send) {	
+			//   zmqsocket2->SendData((char*)(mt->getImage()),imsize*sizeof(int));
+			//   cprintf(BLUE, "Sent Interpolated image\n");
+			// 	// zmqsocket2->SendHeaderData(0, true, SLS_DETECTOR_JSON_HEADER_VERSION);
+			// 	// cprintf(RED, "Sent Dummy\n");
+			// }
+			//	if (save) {
+			  sprintf(tit,"%s_%d.tiff",fn, i_image);
+			  cout << tit << endl;
+			   mt->writeImage(tit);
+			  cout << "wrote" << endl;
+			   mt->clearImage();
+			   //	}
+			i_image++;
+			// dont get data
+			continue; //continue to not get out
+		}
+		//	cprintf(GREEN, "Got Header \n");
+		// get data
+		int length = zmqsocket->ReceiveData(0, (int*)buff, size);
+		//	cprintf(GREEN, "Got Data\n");
+
+		//processing with image
+		//...
+
+
+
+
+	mt->pushData(buff);
+	mt->nextThread();
+	//	cout << " " << (void*)buff;
+	mt->popFree(buff);
+	
+	
+		iframe++;
+		if (iframe%p==0) {
+
+	while (mt->isBusy()) {;}//wait until all data are processed from the queues
+	  sprintf(tit,"%s_tmp.tiff",fn);
+			  mt->writeImage(tit);
+			  //mt->clearImage();
+
+			  cout <<"*"<< iprog++ << endl;
+
+		}
+
+
+
+
+
+
+
+
+
+		// //stream data from socket 2
+		// if (send) {
+		// 	zmqsocket2->SendHeaderData(0, false, SLS_DETECTOR_JSON_HEADER_VERSION,
+		// 			0,0,0,acqIndex,frameIndex,(char*)"run", acqIndex, 0,0,0,0,0,0,0,0,0,0,0,1);
+		// 	cprintf(GREEN, "Sent Header\n");
+
+		// 	zmqsocket2->SendData((char*)image,length);
+		// 	cprintf(GREEN, "Sent Data\n");
+		// }
+
+
+	}// exiting infinite loop
+
+
+
+	delete zmqsocket;
+	// if (send)
+	// 	delete zmqsocket2;
+
+
+	cout<<"Goodbye"<<  endl;
+	return 0;
+}
+
diff --git a/slsDetectorCalibration/moenchExecutables/readClusters.C b/slsDetectorCalibration/moenchExecutables/readClusters.C
new file mode 100644
index 000000000..8fc56e8c1
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/readClusters.C
@@ -0,0 +1,209 @@
+#include "single_photon_hit.h"
+//#include "etaVEL/etaInterpolationPosXY.h"
+
+TH2F *readClusters(char *fname, int nx, int ny, TH2F *h2=NULL) {
+  FILE *f=fopen(fname,"r");
+  int iph=0; 
+  int ns=4;
+  double px, py;
+  double left, right, top, bottom;
+  if (f) {
+    int x1,y1;
+    if (h2==NULL)
+      h2=new TH2F("h2",fname,nx, -0.5, nx-0.5, ny, -0.5, ny-0.5);
+      h2mult=new TH2F("h2mult",fname,nx, -0.5, nx-0.5, ny, -0.5, ny-0.5);
+    TH2F *hint=new TH2F("hint",fname,nx*ns, -0.5, nx-0.5, ny*ns, -0.5, ny-0.5); 
+      TH2F *hff=new TH2F("hff","hff",ns, -0.5, 0.5, ns, -0.5, +0.5); 
+    TH1F *hsp=new TH1F("hsp",fname,500,0,2000);
+    TCanvas *c=new TCanvas();
+    c->SetLogz(kTRUE);
+    h2->Draw("colz");
+    TCanvas *c1=new TCanvas();
+    hsp->Draw();
+    TCanvas *c2=new TCanvas();
+    hint->Draw("colz");
+    c2->SetLogz(kTRUE);
+    single_photon_hit cl(3,3);
+    double tot;
+    int w;
+    double phw=340, phs=62;
+    while (cl.read(f)) {
+      //cl.get_pixel(x1, y1);
+      //cout << cl.iframe << " " << cl.x << " " << cl.y << endl;
+      //if (cl.x>80 && cl.x<280 && cl.y>80 && cl.y<300) {
+	tot=0;
+	left=0;
+	right=0;
+	top=0;
+	bottom=0;
+	for (int ix=-1; ix<2; ix++)
+	  for (int iy=-1; iy<2; iy++){
+	    tot+=cl.get_data(ix,iy);
+	    if (ix<0) left+=cl.get_data(ix,iy);
+	    if (ix>0) right+=cl.get_data(ix,iy);
+	    if (iy<0) bottom+=cl.get_data(ix,iy);
+	    if (iy>0) top+=cl.get_data(ix,iy);
+	    
+	  }
+	px=(-left+right)/tot;
+	py=(-bottom+top)/tot;
+	//max at 340
+	if (tot>200) {
+	  w=(tot+3.5*phs)/phw;
+	} else
+	  w=0;
+	if (w) {
+	  hsp->Fill(tot);
+	  if (w==1) {
+	    h2->Fill(cl.x,cl.y,w);
+	    hint->Fill(px+cl.x,py+cl.y,w);
+	    if (cl.y<350)
+	      hff->Fill(px,py,w);
+	  }
+	 
+	  h2mult->Fill(cl.x,cl.y,w);
+	    
+	//}
+	  iph+=w;
+	  if (iph%100000==0) {
+	    // c->Modified();
+	    // c->Update();
+	    c1->Modified();;
+	    c1->Update();
+	    // c2->Modified();;
+	    // c2->Update();
+	  }
+	}
+	//	if (iph>0.5E7) break;
+    }
+    fclose(f);
+    hff->Scale(hff->GetNbinsX()*hff->GetNbinsY()/hff->Integral());
+    TH2F *hint2=(TH2F*)hint->Clone("hint2");
+    double ff;
+    for (int ibx=0; ibx<hint->GetNbinsX(); ibx++) {
+      for (int iby=0; iby<hint->GetNbinsY(); iby++) {
+    	ff=hff->GetBinContent(ibx%ns+1, iby%ns+1);
+    	//	cout << ibx << " " << iby << " " << ibx%ns << " " << iby%ns << " " << ff << endl;
+    	if (ff>0)
+    	  hint2->SetBinContent(ibx+1, iby+1,hint->GetBinContent(ibx+1,iby+1)/ff); 
+      }
+    }
+
+
+    
+
+
+
+    return h2;
+  
+  } else
+    cout << "could not open file " << fname << endl;
+  return NULL;
+
+
+}
+
+// TH2F *getEta(char *fname, int nx, int ny, TH2F *h2=NULL) {
+//   int ns=10;
+//   slsInterpolation *inte=new etaInterpolationPosXY(nx,ny,ns,
+
+//   FILE *f=fopen(fname,"r");
+//   int iph=0; 
+//   int ns=4;
+//   double px, py;
+//   double left, right, top, bottom;
+//   if (f) {
+//     int x1,y1;
+//     if (h2==NULL)
+//       h2=new TH2F("h2",fname,nx, -0.5, nx-0.5, ny, -0.5, ny-0.5);
+//       h2mult=new TH2F("h2mult",fname,nx, -0.5, nx-0.5, ny, -0.5, ny-0.5);
+//     TH2F *hint=new TH2F("hint",fname,nx*ns, -0.5, nx-0.5, ny*ns, -0.5, ny-0.5); 
+//     //  TH2F *hff=new TH2F("hff","hff",ns, -0.5, 0.5, ns, -0.5, +0.5); 
+//     TH1F *hsp=new TH1F("hsp",fname,500,0,2000);
+//     TCanvas *c=new TCanvas();
+//     c->SetLogz(kTRUE);
+//     h2->Draw("colz");
+//     TCanvas *c1=new TCanvas();
+//     hsp->Draw();
+//     TCanvas *c2=new TCanvas();
+//     hint->Draw("colz");
+//     c2->SetLogz(kTRUE);
+//     single_photon_hit cl(3,3);
+//     double tot;
+//     int w;
+//     double phw=340, phs=62;
+//     while (cl.read(f)) {
+//       //cl.get_pixel(x1, y1);
+//       //cout << cl.iframe << " " << cl.x << " " << cl.y << endl;
+//       //if (cl.x>80 && cl.x<280 && cl.y>80 && cl.y<300) {
+// 	tot=0;
+// 	left=0;
+// 	right=0;
+// 	top=0;
+// 	bottom=0;
+// 	for (int ix=-1; ix<2; ix++)
+// 	  for (int iy=-1; iy<2; iy++){
+// 	    tot+=cl.get_data(ix,iy);
+// 	    if (ix<0) left+=cl.get_data(ix,iy);
+// 	    if (ix>0) right+=cl.get_data(ix,iy);
+// 	    if (iy<0) bottom+=cl.get_data(ix,iy);
+// 	    if (iy>0) top+=cl.get_data(ix,iy);
+	    
+// 	  }
+// 	px=(-left+right)/tot;
+// 	py=(-bottom+top)/tot;
+// 	//max at 340
+// 	if (tot>200) {
+// 	  w=(tot+3.5*phs)/phw;
+// 	} else
+// 	  w=0;
+// 	if (w) {
+// 	  hsp->Fill(tot);
+// 	  if (w==1) {
+// 	    h2->Fill(cl.x,cl.y,w);
+// 	    hint->Fill(px+cl.x,py+cl.y,w);
+// 	  }
+	 
+// 	  h2mult->Fill(cl.x,cl.y,w);
+	    
+// 	  // if (cl.y<350)
+// 	  //   hff->Fill(px,py,w);
+// 	//}
+// 	  iph+=w;
+// 	  if (iph%100000==0) {
+// 	    // c->Modified();
+// 	    // c->Update();
+// 	    c1->Modified();;
+// 	    c1->Update();
+// 	    // c2->Modified();;
+// 	    // c2->Update();
+// 	  }
+// 	}
+// 	//	if (iph>0.5E7) break;
+//     }
+//     fclose(f);
+//     // hff->Scale(hff->GetNbinsX()*hff->GetNbinsY()/hff->Integral());
+//     // TH2F *hint2=(TH2F*)hint->Clone("hint2");
+//     // double ff;
+//     // for (int ibx=0; ibx<hint->GetNbinsX(); ibx++) {
+//     //   for (int iby=0; iby<hint->GetNbinsY(); iby++) {
+//     // 	ff=hff->GetBinContent(ibx%ns+1, iby%ns+1);
+//     // 	//	cout << ibx << " " << iby << " " << ibx%ns << " " << iby%ns << " " << ff << endl;
+//     // 	if (ff>0)
+//     // 	  hint2->SetBinContent(ibx+1, iby+1,hint->GetBinContent(ibx+1,iby+1)/ff); 
+//     //   }
+//     // }
+
+
+    
+
+
+
+//     return h2;
+  
+//   } else
+//     cout << "could not open file " << fname << endl;
+//   return NULL;
+
+
+// }
diff --git a/slsDetectorCalibration/moenchExecutables/tiff_to_th2f.cpp b/slsDetectorCalibration/moenchExecutables/tiff_to_th2f.cpp
new file mode 100644
index 000000000..3e248feaa
--- /dev/null
+++ b/slsDetectorCalibration/moenchExecutables/tiff_to_th2f.cpp
@@ -0,0 +1,57 @@
+#include <TPaveText.h> 
+#include <TLegend.h> 
+#include <TF1.h> 
+#include <TGraphErrors.h> 
+#include <TH2F.h> 
+#include <TASImage.h> 
+#include <TImage.h> 
+#include <TFile.h> 
+#include <vector> 
+#include <string> 
+#include <sstream> 
+#include <iomanip> 
+#include <fstream> 
+#include "tiffIO.h"
+
+#include<iostream>
+
+using namespace std;
+
+
+int main(int argc, char *argv[]) {
+/**
+ * trial.o [socket ip] [starting port number] [outfname]
+ *
+ */
+
+  if (argc<3) {
+    cout << "Wrong usage! Should be: "<< argv[0] << " infile " << " outfile " << endl;
+    return 1;
+  }
+
+  uint32  nx, ny;
+  
+  float *data=ReadFromTiff(argv[1],nx, ny);
+
+  TH2F *h2=NULL;
+  if (data) {
+    TFile *fout=new TFile(argv[2],"RECREATE");
+    if (fout) {
+      h2=new TH2F("h2",argv[1],nx,0,nx,ny,0, ny);
+      for (int ix=0; ix<nx ; ix++) {
+	for (int iy=0; iy<ny ; iy++) {
+	  
+	  h2->SetBinContent(ix+1, iy+1, data[ix+iy*nx]);
+	}
+      }
+      h2->Write();
+      fout->Close();
+    }
+    delete [] data;
+  }
+    
+
+ 
+  return 0;
+}
+
diff --git a/slsDetectorCalibration/moenchMakeTree.C b/slsDetectorCalibration/moenchMakeTree.C
deleted file mode 100644
index 372052285..000000000
--- a/slsDetectorCalibration/moenchMakeTree.C
+++ /dev/null
@@ -1,244 +0,0 @@
-#include <TH1D.h>
-#include <TH2D.h>
-#include <TPad.h>
-#include <TDirectory.h>
-#include <TEntryList.h>
-#include <TFile.h>
-#include <TMath.h>
-#include <TTree.h>
-#include <TChain.h>
-#include <THStack.h>
-#include <TCanvas.h>
-#include <stdio.h>
-#include <deque>
-#include <list>
-#include <queue>
-#include <fstream>
-#include "RunningStat.h"
-#include "MovingStat.h"
-#include "moench02ModuleData.h"
-#include <TThread.h>
-
-using namespace std;
-
-
-//tree variables 
- int xC,yC,iFrameC;
- double meC,sigC;
- Double_t dataC[3][3];
-TTree* tall;
-
-typedef struct task_s{
-  char *fformat;
-  char *tname;
-  int runmin;
-  int runmax;
-  int sign;
-} Task;
-
-void setUpTree(char *tname){
-  tall=new TTree(tname,tname);
-  tall->Branch("iFrame",&iFrameC,"iframe/I");
-  tall->Branch("x",&xC,"x/I");
-  tall->Branch("y",&yC,"y/I");
-  tall->Branch("data",dataC,"data[3][3]/D");
-  tall->Branch("pedestal",&meC,"pedestal/D");
-  tall->Branch("rms",&sigC,"rms/D");
-}
-
-inline void storeEvent(int iF,int x,int y, Double_t data[][3], double me, double sig){
-  TThread::Lock();
-  xC = x; yC = y; iFrameC = iF;
-  memcpy(dataC,data,sizeof(Double_t)*3*3);
-  //cout << "X: " << x << " Y: " << y      << endl;
-  /*  for(int i = 0; i < 3; i++){
-    for(int j = 0; j < 3; j++){
-      cout << "i: " << i << " j: " << j << " dataC " << dataC[i][j] << " data " << data[i][j] << endl;
-    }
-    }*/
-  meC = me; sigC = sig;
-  tall->Fill(); 
-  TThread::UnLock();
-}
-
-void moenchMakeTree(char *fformat, char *tname, int runmin, int runmax, int sign=1) {
-  double nThSigma = 3.;
-  moench02ModuleData *decoder=new moench02ModuleData();
-  char *buff;
-  char fname[10000];
-  
-  int nf=0;
-  
-  int dum, nPhotons;
-  double me, sig, tot, maxNei, val, valNei;
-
-  MovingStat stat[160][160];
-  MovingStat nPhotonsStat;
-
-  ifstream filebin;
-
-  int nbg=20;
-
-  int ix, iy, ir, ic, mx,my;
-  Double_t data[3][3];
-
-  nPhotonsStat.Clear();
-  nPhotonsStat.SetN(1000);
-
-  for (ir=0; ir<160; ir++) {
-    for (ic=0; ic<160; ic++) {
-      stat[ir][ic].Clear();
-      stat[ir][ic].SetN(nbg);
-    }
-  }
-
-  for (int irun=runmin; irun<runmax; irun++) {
-    sprintf(fname,fformat,irun);
-    //cout << "process file " << fname; // cout.flush();
-    filebin.open((const char *)(fname), ios::in | ios::binary);
-   
-    while ((buff=decoder->readNextFrame(filebin))) {
-      nPhotons=0;
-      //for (ix=0; ix<160; ix++){
-      for (ix=0; ix<40; ix++){
-	for (iy=0; iy<160; iy++) {
-	
-
-
-	   dum=0; //no hit
-	   // tot=0;	     
-	    
-	    me=stat[iy][ix].Mean();
-	    sig=stat[iy][ix].StandardDeviation();
-	    val=sign*(decoder->getChannelShort(buff,ix,iy)-me);
-
-
-	    if (nf>nbg) {
-	      me=stat[iy][ix].Mean();
-	      sig=stat[iy][ix].StandardDeviation();
-	      val=sign*decoder->getChannel(buff,ix,iy)-me;
-
-	      //    dum=0; //no hit
-	      tot=0;
-	      maxNei = 0;
-
-	      if (val>nThSigma*sig)//{ //hit check if neighbors are higher
-		dum=1;
-	      for (ir=-1; ir<2; ir++){
-		for (ic=-1; ic<2; ic++){
-		  if ((ix+ic)>=0 && (ix+ic)<160 && (iy+ir)>=0 && (iy+ir)<160) {
-		    valNei = sign*decoder->getChannel(buff,ix+ic,iy+ir)-stat[iy+ir][ix+ic].Mean();
-		    if (sign*decoder->getChannel(buff,ix+ic,iy+ir)>(stat[iy+ir][ix+ic].Mean()+3.*stat[iy+ir][ix+ic].StandardDeviation())) dum=1; //is a hit or neighbour is a hit!
-		    tot+=valNei;
-		    data[ir+1][ic+1] = valNei;
-		    if(valNei/stat[iy+ir][ix+ic].StandardDeviation() > maxNei){
-		      maxNei = valNei/stat[iy+ir][ix+ic].StandardDeviation();		    
-		      mx = ir;
-		      my = ic;
-		    }
-		  }
-		}
-	      }
-		// }
-
-	      if (val<(-nThSigma*sig)) dum=2; //discard negative events!
-
-	      if(dum == 1 && mx == 0 && my == 0){ // this is an event and we are in the center
-		storeEvent(nf,ix,iy,data,me,sig);
-		nPhotons++;
-		//cout << "BF X: " << ix << " Y: " << iy << " val: " << val << " tot: " << tot << " me: " << me << " sig: " << sig <<  endl; 
-	      }
-	      
-
-	      //if (tot>9.*sig && dum == 1){ dum=3;} 	      
-	      //cout << dum;
-	    }  
-	    //if (ix==20 && iy==40)
-	    //cout << decoder->getChannelShort(buff,ix,iy)<< " " << val << " " << me << " " << sig << " " << dum << endl;
-
-	    if ( dum==0) {
-	   
-	      stat[iy][ix].Calc(decoder->getChannelShort(buff,ix,iy));
-	    }
-	    if (nf<nbg || dum==0) 
-	      stat[iy][ix].Calc(sign*decoder->getChannel(buff,ix,iy));
-	   
-	  }
-      }
-      delete [] buff;
-      //cout << "="; cout.flush();
-      if(nf>nbg) nPhotonsStat.Calc((double)nPhotons);
-      nf++;
-    }
-    //cout << endl;
-    cout << "processed File " << fname << "  done. Avg. Photons/Frame: " << nPhotonsStat.Mean() << " sig: " <<  nPhotonsStat.StandardDeviation() << " " << runmax-irun << " files need processing" << endl;
-    if (filebin.is_open())
-      filebin.close();	  
-    else
-      cout << "could not open file " << fname << endl;
-  }
-
-  delete decoder;
-  cout << "Read " << nf << " frames" << endl;
-
- 
-}
-
-void *moenchMakeTreeTask(void *p){
-  Task *t = (Task *)p;
-  moenchMakeTree(t->fformat,t->tname,t->runmin,t->runmax,t->sign);
-  return 0;
-}
-
-
-//to compile: g++ -DMYROOT -g `root-config --cflags --glibs` -o moenchMakeTree moenchMakeTree.C
-int main(int argc, char **argv){
-  if(argc != 6){ cout << "Usage: inFile outdir tname fileNrStart fileNrEnd" << endl; exit(-1); }
-  
-  int nThreads = 10;
-  TThread *threads[nThreads];
-
-  char *inFile = argv[1];
-  char *outDir = argv[2];
-  char *tName = argv[3];
-  int start = atoi(argv[4]);
-  int end = atoi(argv[5]);
-
-  TFile *f;
-  char outfname[1000];
-  char threadName[1000];
-
-  sprintf(outfname,"%s/%s.root",outDir,tName);
-  f=new TFile(outfname,"RECREATE");
-
-  cout << "outputfile: " << outfname << endl;
-  setUpTree(tName);
-  
-  for(int i = 0; i < nThreads; i++){
-    sprintf(threadName,"t%i",i);
-    Task *t = (Task *)malloc(sizeof(Task));
-    t->fformat = inFile;
-    t->tname = tName;
-    t->sign = 1.;
-    t->runmin = start + (end-start)/(nThreads)*i;
-    t->runmax = start + (end-start)/(nThreads)*(i+1);
-    if(i == nThreads - 1) t->runmax = end;
-    cout << "start thread " << i << " start: " << t->runmin << " end " << t->runmax << endl;
-    threads[i] = new TThread(threadName, moenchMakeTreeTask, t);
-    threads[i]->Run();
-    //moenchMakeTreeTask(t);
-  }
-  
-
-  //TThread::Ps();
-
-    for(int i = 0; i < nThreads; i++){
-    threads[i]->Join();
-  }
-
-
-  tall->Write();
-  tall->Print();  
-  f->Close();
-}
-
diff --git a/slsDetectorCalibration/moenchReadData.C b/slsDetectorCalibration/moenchReadData.C
deleted file mode 100644
index 632f743c3..000000000
--- a/slsDetectorCalibration/moenchReadData.C
+++ /dev/null
@@ -1,238 +0,0 @@
-#include <TH1D.h>
-#include <TH2D.h>
-#include <TPad.h>
-#include <TDirectory.h>
-#include <TEntryList.h>
-#include <TFile.h>
-#include <TMath.h>
-#include <TTree.h>
-#include <TChain.h>
-#include <THStack.h>
-#include <TCanvas.h>
-#include <stdio.h>
-//#include <deque>
-//#include <list>
-//#include <queue>
-#include <fstream>
-#include "moench02ModuleData.h"
-#include "moenchCommonMode.h"
-
-#include "singlePhotonDetector.h"
-
-//#include "MovingStat.h"
-
-using namespace std;
-
-#define NC 160
-#define NR 160
-
-
-#define MY_DEBUG 1
-
-#ifdef MY_DEBUG
-#include <TCanvas.h>
-#endif
-
-/**
-
-Loops over data file to find single photons, fills the tree (and writes it to file, althoug the root file should be opened before) and creates 1x1, 2x2, 3x3 cluster histograms with ADCu on the x axis, channel number (160*x+y) on the y axis.
-
-  \param fformat file name format
-  \param tit title of the tree etc.
-  \param runmin minimum run number
-  \param runmax max run number
-  \param nbins  number of bins for spectrum hists
-  \param hmin histo minimum for spectrum hists
-  \param hmax histo maximum for spectrum hists
-  \param sign sign of the spectrum to find hits
-  \param hc readout correlation coefficient with previous pixel
-  \param xmin minimum x coordinate
-  \param xmax maximum x coordinate
-  \param ymin minimum y coordinate
-  \param ymax maximum y coordinate
-  \param cmsub  enable commonmode subtraction
-  \returns pointer to histo stack with cluster spectra
-*/
-
-
-THStack *moenchReadData(char *fformat, char *tit, int runmin, int runmax, int nbins=1500, int hmin=-500, int hmax=1000, int sign=1, double hc=0, int xmin=1, int xmax=NC-1, int ymin=1, int ymax=NR-1, int cmsub=0, int hitfinder=1) {
-  
-  moench02ModuleData *decoder=new moench02ModuleData(hc);
-  moenchCommonMode *cmSub=NULL;
-  if (cmsub)
-    cmSub=new moenchCommonMode();
-
-  int nph=0;
-
-  singlePhotonDetector<uint16_t> *filter=new singlePhotonDetector<uint16_t>(decoder, 3, 5, sign, cmSub);
-
-  char *buff;
-  char fname[10000];
-  int nf=0;
-  
-  eventType thisEvent=PEDESTAL;
-
-  // int iframe;
-  // double *data, ped, sigma;
-
-  // data=decoder->getCluster();
-
-  TH2F *h2;
-  TH2F *h3;
-  TH2F *hetaX;
-  TH2F *hetaY;
-
-  THStack *hs=new THStack("hs",fformat);
-
-
-
-  TH2F *h1=new TH2F("h1",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-  hs->Add(h1);
-
-  if (hitfinder) {
-    h2=new TH2F("h2",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-    h3=new TH2F("h3",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
-    hetaX=new TH2F("hetaX",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5);
-    hetaY=new TH2F("hetaY",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5);
-    hs->Add(h2);
-    hs->Add(h3);
-    hs->Add(hetaX);
-    hs->Add(hetaY);
-  }
-
-  
-  
-  ifstream filebin;
-
-
-  int ix=20, iy=20, ir, ic;
-
-
-  Int_t iFrame;
-  TTree *tall;
-  if (hitfinder)
-    tall=filter->initEventTree(tit, &iFrame);
-
-
-  
-
-#ifdef MY_DEBUG
-  
-  TCanvas *myC;
-  TH2F *he;
-  TCanvas *cH1;
-  TCanvas *cH2;
-  TCanvas *cH3;
-
-  if (hitfinder) {
-    myC=new TCanvas();
-    he=new TH2F("he","Event Mask",xmax-xmin, xmin, xmax, ymax-ymin, ymin, ymax);
-    he->SetStats(kFALSE);
-    he->Draw("colz");
-    cH1=new TCanvas();
-    cH1->SetLogz();
-    h1->Draw("colz");
-    cH2=new TCanvas();
-    cH2->SetLogz();
-    h2->Draw("colz");
-    cH3=new TCanvas();
-    cH3->SetLogz();
-    h3->Draw("colz");
-  }
-#endif
-  filter->newDataSet();
-
-
-  for (int irun=runmin; irun<runmax; irun++) {
-    sprintf(fname,fformat,irun);
-    cout << "file name " << fname << endl;
-    filebin.open((const char *)(fname), ios::in | ios::binary);
-    nph=0;
-    while ((buff=decoder->readNextFrame(filebin))) {
-      
-
-      if (hitfinder) {
-	filter->newFrame();
-
-	//calculate pedestals and common modes
-	if (cmsub) {
-	//	cout << "cm" << endl;
-	  for (ix=xmin-1; ix<xmax+1; ix++)
-	    for (iy=ymin-1; iy<ymax+1; iy++) {
-	      thisEvent=filter->getEventType(buff, ix, iy,0);
-	    }
-	}
-      }
-
-      //   cout << "new frame " << endl;
-
-      for (ix=xmin-1; ix<xmax+1; ix++)
-	for (iy=ymin-1; iy<ymax+1; iy++) {
-	  //	  cout << ix << " " << iy << endl;
-	  thisEvent=filter->getEventType(buff, ix, iy, cmsub);
-
-#ifdef MY_DEBUG
-	  if (hitfinder) {
-	    if (iev%1000==0)
-	      he->SetBinContent(ix+1-xmin, iy+1-ymin, (int)thisEvent);
-	  }
-#endif	  
-	  
-	  if (nf>1000) {
-	    h1->Fill(filter->getClusterTotal(1), iy+NR*ix);
-	    if (hitfinder) {
-	      
-	      if (thisEvent==PHOTON_MAX ) {
-		nph++;
-
-		h2->Fill(filter->getClusterTotal(2), iy+NR*ix);
-		h3->Fill(filter->getClusterTotal(3), iy+NR*ix);
-		iFrame=decoder->getFrameNumber(buff);
-
-		tall->Fill();
-	   
-       
-	      }
-	  
-	    
-	    }
-	    
-
-	  }
-	}
-	  //////////////////////////////////////////////////////////
-    
-#ifdef MY_DEBUG
-      if (iev%1000==0) {
-	myC->Modified();
-	myC->Update();
-	cH1->Modified();
-	cH1->Update();
-	cH2->Modified();
-	cH2->Update();
-	cH3->Modified();
-	cH3->Update();
-      }
-      iev++;
-#endif		    
-      nf++;
-      
-      cout << "=" ;
-      delete [] buff;
-    }
-    cout << nph << endl;
-    if (filebin.is_open())
-    filebin.close();	  
-    else
-      cout << "could not open file " << fname << endl;
-  } 
-  if (hitfinder)
-    tall->Write(tall->GetName(),TObject::kOverwrite);
-  
-    
-  
-  delete decoder;
-  cout << "Read " << nf << " frames" << endl;
-  return hs;
-}
-  
diff --git a/slsDetectorCalibration/moenchReadDataMT.C b/slsDetectorCalibration/moenchReadDataMT.C
deleted file mode 100644
index 0720909c4..000000000
--- a/slsDetectorCalibration/moenchReadDataMT.C
+++ /dev/null
@@ -1,52 +0,0 @@
-#include <TFile.h>
-#include <TThread.h>
-#include "moenchReadData.C"
-
-typedef struct task_s{
-  char *fformat;
-  char *tname;
-  char *tdir;
-  int runmin;
-  int runmax;
-  int treeIndex;
-} Task;
-
-void *moenchMakeTreeTask(void *p){
-  TThread::Lock();
-  char fname[1000];
-  Task *t = (Task *)p;
-  sprintf(fname,"%s%s_%i.root",t->tdir,t->tname,t->treeIndex);
-  TFile *f = new TFile(fname,"RECREATE");
-  cout << "Call moenchReadData(" << t->fformat << "," << t->tname << "," << t->runmin<< "," << t->runmax <<")" << endl;
-  TThread::UnLock();
-  moenchReadData(t->fformat,t->tname,t->runmin,t->runmax);
-  f->Close();
-  return 0;
-}
-
-
-void moenchReadDataMT(char *fformat, char *tit, char *tdir, int runmin, int runoffset, int nThreads, int treeIndexStart=0){
-  char threadName[1000];
-  TThread *threads[nThreads];
-  for(int i = 0; i < nThreads; i++){
-    sprintf(threadName,"t%i",i);
-    Task *t = (Task *)malloc(sizeof(Task));
-    t->fformat = fformat;
-    t->tname = tit;
-    t->tdir = tdir;
-    t->runmin = runmin + i*runoffset;
-    t->runmax = runmin + (i+1)*runoffset - 1;
-    t->treeIndex = treeIndexStart + i;
-    cout << "start thread " << i << " start: " << t->runmin << " end " << t->runmax << endl;
-    threads[i] = new TThread(threadName, moenchMakeTreeTask, t);
-    threads[i]->Run();
-  }
-
-  for(int i = 0; i < nThreads; i++){
-    threads[i]->Join();
-  }
-
-}
-
-
-
diff --git a/slsDetectorCalibration/multiThreadedAnalogDetector.h b/slsDetectorCalibration/multiThreadedAnalogDetector.h
new file mode 100644
index 000000000..02969a609
--- /dev/null
+++ b/slsDetectorCalibration/multiThreadedAnalogDetector.h
@@ -0,0 +1,572 @@
+#ifndef MULTITHREADED_ANALOG_DETECTOR_H
+#define MULTITHREADED_ANALOG_DETECTOR_H
+
+#include <vector>
+#include <string>
+#include <sstream>
+#include <iomanip>
+#include <fstream>
+#include <stdio.h>
+//#include <deque>
+//#include <list>
+//#include <queue>
+#include <fstream>
+#include <cstdlib> 
+#include <pthread.h>
+
+//#include "analogDetector.h"
+#include "singlePhotonDetector.h"
+//#include "interpolatingDetector.h"
+#include "circularFifo.h"
+#include "slsInterpolation.h"
+#include <unistd.h>
+#include <stdio.h>
+#include <stdlib.h>
+//#include <mutex>
+
+
+using namespace std;
+
+
+class threadedAnalogDetector
+{
+public:
+  threadedAnalogDetector(analogDetector<uint16_t> *d, int fs=10000) {
+    char *mem, *mm;
+    det=d;
+    fifoFree=new CircularFifo<char>(fs);
+    fifoData=new CircularFifo<char>(fs);
+    mem=(char*)malloc(fs*det->getDataSize());
+    // cout << "data size is " << det->getDataSize()*fs << endl;
+    for (int i=0; i<fs; i++) {
+      mm=mem+i*det->getDataSize();
+      fifoFree->push(mm);
+    }  
+    busy=0;
+    stop=1;
+    fMode=eFrame;
+    ff=NULL;
+  }
+  
+
+  virtual int setFrameMode(int fm) {fMode=fm; if (fMode>=0) det->setFrameMode((frameMode)fMode);};
+
+      //fMode=fm; return fMode;}
+
+  /* void prepareInterpolation(int &ok) { */
+  /*   cout << "-" << endl; */
+  /*   det->prepareInterpolation(ok); */
+  /* }; */
+
+  virtual int *getImage() {
+    return det->getImage();
+  }
+  virtual int getImageSize(int &nnx, int &nny, int &ns) {return det->getImageSize(nnx, nny, ns);};
+  virtual int getDetectorSize(int &nnx, int &nny) {return det->getDetectorSize(nnx, nny);};
+
+  ~threadedAnalogDetector() {StopThread(); free(mem); delete fifoFree; delete fifoData;}
+
+   /** Returns true if the thread was successfully started, false if there was an error starting the thread */
+   virtual bool StartThread()
+   { stop=0; 
+     return (pthread_create(&_thread, NULL, processData, this) == 0);
+   }
+
+   virtual void StopThread()
+   { stop=1;
+     (void) pthread_join(_thread, NULL);
+   }
+   
+
+   virtual bool pushData(char* &ptr) {
+     fifoData->push(ptr);
+   }
+
+   virtual bool popFree(char* &ptr) {
+     fifoFree->pop(ptr);
+   }
+
+   virtual int isBusy() {return busy;}
+   
+   //protected:
+   /** Implement this method in your subclass with the code you want your thread to run. */
+   //virtual void InternalThreadEntry() = 0;
+   virtual void *writeImage(const char * imgname) {cout << "a" <<endl; return det->writeImage(imgname);};
+
+   virtual void clearImage(){det->clearImage();};
+
+   virtual void prepareInterpolation(int &ok){
+     slsInterpolation *interp=(slsInterpolation*)det->getInterpolation();
+     if (interp) 
+       interp->prepareInterpolation(ok);
+   }
+
+   virtual int *getFlatField(){
+     slsInterpolation *interp=(slsInterpolation*)det->getInterpolation();
+     if (interp) 
+       return interp->getFlatField();
+     else
+       return NULL;
+   }
+   
+   virtual int *setFlatField(int *ff, int nb, double emin, double emax){
+     slsInterpolation *interp=(slsInterpolation*)det->getInterpolation();
+     if (interp) 
+       return interp->setFlatField(ff, nb, emin, emax);
+     else
+       return NULL;
+   }
+   
+   virtual int *getFlatField(int &nb, double emi, double ema){
+     slsInterpolation *interp=(slsInterpolation*)det->getInterpolation();
+     int *ff;
+     if (interp) { 
+       ff=interp->getFlatField(nb,emi,ema);
+       //   cout << "tdgff* ff has " << nb << " bins " << endl;
+       return ff;
+     }     else
+       return NULL;
+   }
+   
+   virtual char *getInterpolation() {
+     return det->getInterpolation();
+   }
+   
+   virtual void setPedestal(double *ped, double *rms=NULL, int m=-1){det->setPedestal(ped,rms,m);};
+   
+   
+   virtual void setPedestalRMS(double *rms){ det->setPedestalRMS(rms);};
+   
+ virtual double *getPedestal(double *ped=NULL){return det->getPedestal(ped);};
+   
+   
+   virtual double *getPedestalRMS(double *rms=NULL){ return det->getPedestalRMS(rms);};
+   
+   
+   
+
+/** sets file pointer where to write the clusters to 
+    \param f file pointer
+    \returns current file pointer
+*/
+   FILE *setFilePointer(FILE *f){return det->setFilePointer(f); };
+
+/** gets file pointer where to write the clusters to 
+    \returns current file pointer
+*/
+FILE *getFilePointer(){return det->getFilePointer();};
+
+
+ void setMutex(pthread_mutex_t *fmutex){det->setMutex(fmutex);};
+
+private:
+   analogDetector<uint16_t> *det;
+   int fMode;
+   int *dataSize;
+   pthread_t _thread;
+   char *mem;
+   CircularFifo<char> *fifoFree;
+   CircularFifo<char> *fifoData;
+   int stop;
+   int busy;
+   char *data;
+   int *ff;
+
+   static void * processData(void * ptr) {
+     threadedAnalogDetector *This=((threadedAnalogDetector *)ptr); 
+     return This->processData();
+   }
+   void * processData() {
+     busy=1;
+     while (!stop) {
+       if (fifoData->isEmpty()) {
+	 busy=0;
+	 usleep(100);
+       } else {
+	 busy=1;
+	 fifoData->pop(data); //blocking!
+	 det->processData(data);
+	 fifoFree->push(data); 
+       }
+     }
+     return NULL;
+   }
+
+
+
+};
+
+
+
+class multiThreadedAnalogDetector
+{
+public:
+ multiThreadedAnalogDetector(analogDetector<uint16_t> *d, int n, int fs=1000) : nThreads(n), ithread(0) { 
+    dd[0]=d;
+    if (nThreads==1)
+      dd[0]->setId(100);
+    else 
+      dd[0]->setId(0);
+    for (int i=1; i<nThreads; i++) {
+      dd[i]=d->Clone();
+      dd[i]->setId(i);
+    }
+    
+    for (int i=0; i<nThreads; i++) {
+      dets[i]=new threadedAnalogDetector(dd[i], fs);
+    }
+    
+    int nnx, nny, ns;
+    int nn=dets[0]->getImageSize(nnx, nny,ns);
+    image=new int[nn];
+    ff=NULL;
+    ped=NULL;
+  }
+  
+  ~multiThreadedAnalogDetector() { 
+    StopThreads();
+    for (int i=0; i<nThreads; i++) 
+      delete dets[i]; 
+    for (int i=1; i<nThreads; i++) 
+      delete dd[i];
+    delete [] image;
+  }
+
+
+  int setFrameMode(int fm) { int ret; for (int i=0; i<nThreads; i++) ret=dets[i]->setFrameMode(fm); return ret;};
+  
+  int *getImage(int &nnx, int &nny, int &ns) {
+    int *img;
+    // int nnx, nny, ns;
+    int nn=dets[0]->getImageSize(nnx, nny, ns);
+    //for (i=0; i<nn; i++) image[i]=0;
+    
+    for (int ii=0; ii<nThreads; ii++) {
+      //  cout << ii << " " << dets[ii]->getImageSize(nnx, nny, ns) << " " << nnx << " " << nny << " " << ns << endl;
+      img=dets[ii]->getImage();
+      for (int i=0; i<nn; i++) {
+	if (ii==0)
+	  image[i]=img[i];
+	else
+	  image[i]+=img[i];
+      }
+    
+    }
+    return image;
+    
+  }
+
+
+  void clearImage() {
+  
+    for (int ii=0; ii<nThreads; ii++) {
+      dets[ii]->clearImage();
+    }
+    
+  }
+
+   virtual void *writeImage(const char * imgname) {   
+/* #ifdef SAVE_ALL   */
+/*      for (int ii=0; ii<nThreads; ii++) { */
+/*        char tit[10000];cout << "m" <<endl; */
+/*        sprintf(tit,"/scratch/int_%d.tiff",ii); */
+/*        dets[ii]->writeImage(tit); */
+/*      } */
+/* #endif */
+     int nnx, nny, ns;
+     getImage(nnx, nny, ns);
+     //int nnx, nny, ns;
+     int nn=dets[0]->getImageSize(nnx, nny, ns);
+     float *gm=new float[nn];
+     if (gm) {
+       for (int ix=0; ix<nn; ix++) {
+	 //	 if (image[ix]>0) cout << ix << " " << image[ix]<< endl;
+	 gm[ix]=image[ix];
+       }
+       //cout << "image " << nnx << " " << nny << endl;
+       WriteToTiff(gm,imgname ,nnx, nny); 
+       delete [] gm;
+     } else cout << "Could not allocate float image " << endl;
+     return NULL;
+   }
+  
+
+  virtual void StartThreads() { 
+    for (int i=0; i<nThreads; i++) 
+      dets[i]->StartThread(); 
+      
+    }
+   
+
+
+  virtual void StopThreads() { 
+    for (int i=0; i<nThreads; i++) 
+      dets[i]->StopThread(); 
+      
+    }
+
+  
+  int isBusy() {
+    int ret=0, ret1;  
+    for (int i=0; i<nThreads; i++) {
+      ret1=dets[i]->isBusy();
+      ret|=ret1;
+      //   if (ret1) cout << "thread " << i <<" still busy " << endl;
+    }
+    return ret;
+  }
+  
+   
+   bool pushData(char* &ptr) {
+     dets[ithread]->pushData(ptr);
+   }
+
+   bool popFree(char* &ptr) {
+     dets[ithread]->popFree(ptr);
+   }
+   
+   int nextThread() {
+     ithread++;
+     if (ithread==nThreads) ithread=0;
+     return ithread;
+   }
+
+   virtual void prepareInterpolation(int &ok){
+     getFlatField(); //sum up all etas
+     setFlatField(); //set etas to all detectors
+     for (int i=0; i<nThreads; i++) {
+       dets[i]->prepareInterpolation(ok);
+     }
+   }
+   
+   virtual int *getFlatField(){
+     int nb=0;
+     double emi, ema;
+     int *f0;
+     slsInterpolation* inte=(slsInterpolation*)dets[0]->getInterpolation();
+     if (inte) {
+       if (inte->getFlatField(nb,emi,ema)) {
+	 if (ff) delete [] ff;
+	 ff=new int[nb*nb];
+	 for (int i=0; i<nThreads; i++) {
+	   //   cout << "mtgff* ff has " << nb << " bins " << endl;
+	   inte=(slsInterpolation*)dets[i]->getInterpolation();
+	   f0=inte->getFlatField();
+	   if (f0) {
+	     //    cout << "ff " << i << endl;
+	     for (int ib=0; ib<nb*nb; ib++) {
+	       if (i==0)
+		   ff[ib]=f0[ib];
+		 else
+		   ff[ib]+=f0[ib];	  
+	       /* if (i==0 && f0[ib]>0) */
+	       /* 	 cout << i << " " << ib << " " << f0[ib] << " " << ff[ib] << endl; */
+
+	     }
+	   }
+	 }
+	 return ff;
+       }
+     } 
+     return NULL;
+   }
+   
+   
+   virtual int *setFlatField(int *h=NULL, int nb=-1, double emin=1, double emax=0){
+     //int nb=0;
+     double emi, ema;
+     slsInterpolation* inte=(slsInterpolation*)dets[0]->getFlatField(nb,emi,ema);
+     if (inte) {
+       if (h==NULL) h=ff;
+      for (int i=0; i<nThreads; i++) {
+	dets[i]->setFlatField(h, nb, emin, emax);
+      }
+     }
+     return NULL;
+   }; 
+
+   void *writeFlatField(const char * imgname){
+     
+     int nb=0;
+     double emi, ema;
+     slsInterpolation* inte=(slsInterpolation*)dets[0]->getFlatField(nb,emi,ema);
+     if (inte) {
+      if (getFlatField()) {
+	//	cout << "mtwff* ff has " << nb << " bins " << endl;
+	float *gm=new float[nb*nb];
+	if (gm) {
+	  for (int ix=0; ix<nb*nb; ix++) {
+	    gm[ix]=ff[ix];
+	  }    
+	  WriteToTiff(gm,imgname ,nb, nb); 
+	  delete [] gm;
+	} else cout << "Could not allocate float image " << endl;
+      }
+    } else
+      cout << "Not interpolating detector! " << endl;
+    
+    return NULL;
+    
+   };
+
+
+  void *readFlatField(const char * imgname, int nb=-1, double emin=1, double emax=0){
+    
+    int* inte=(int*)dets[0]->getFlatField(nb,emin,emax);
+    if (inte) {
+    uint32 nnx;
+    uint32 nny;
+    float *gm=ReadFromTiff(imgname, nnx, nny);
+    if (ff) delete [] ff;
+    if (nnx>nb) nb=nnx;
+    if (nny>nb) nb=nny;
+    ff=new int[nb*nb];
+    
+    for (int ix=0; ix<nb*nb; ix++) {
+      ff[ix]=gm[ix];
+    }
+    delete [] gm;
+      return setFlatField(ff,nb,emin,emax);
+    } else
+       cout << "Not interpolating detector! " << endl;
+    
+    return NULL;
+  };
+  
+
+
+
+
+  virtual double *getPedestal(){
+    int nx, ny;
+    dets[0]->getDetectorSize(nx,ny);
+    if (ped) delete [] ped;
+    ped=new double[nx*ny];
+    double *p0=new double[nx*ny];
+    
+    for (int i=0; i<nThreads; i++) {
+      //inte=(slsInterpolation*)dets[i]->getInterpolation(nb,emi,ema);
+      p0=dets[i]->getPedestal(p0);
+      if (p0) {
+	for (int ib=0; ib<nx*ny; ib++) {
+	  ped[ib]+=p0[ib];
+	}
+      }
+	
+      delete [] p0;
+    } 
+    return ped;
+  };
+   
+   
+   virtual double *setPedestal(double *h=NULL){
+     //int nb=0;
+    
+     int nx, ny;
+     dets[0]->getDetectorSize(nx,ny);
+     if (h==NULL) h=ped;
+     for (int i=0; i<nThreads; i++) {
+       dets[i]->setPedestal(h);
+     }
+     
+     return NULL;
+   }; 
+
+
+
+
+   void *writePedestal(const char * imgname){     
+    
+     int nx, ny;
+     dets[0]->getDetectorSize(nx,ny);
+   
+      getPedestal();
+      float *gm=new float[nx*ny];
+      if (gm) {
+       for (int ix=0; ix<nx*ny; ix++) {
+	 gm[ix]=ped[ix];
+       }    
+       WriteToTiff(gm,imgname ,nx, ny); 
+       delete [] gm;
+     } else cout << "Could not allocate float image " << endl;
+    
+    return NULL;
+
+   };
+
+
+  void *readPedestal(const char * imgname, int nb=-1, double emin=1, double emax=0){
+    
+     int nx, ny;
+     dets[0]->getDetectorSize(nx,ny);
+    uint32 nnx;
+    uint32 nny;
+    float *gm=ReadFromTiff(imgname, nnx, nny);
+    if (ped) delete [] ped;
+    if (nnx>nx) nx=nnx;
+    if (nny>ny) ny=nny;
+    ped=new double[nx*ny];
+    
+    for (int ix=0; ix<nx*ny; ix++) {
+      ped[ix]=gm[ix];
+    }
+    delete [] gm;
+    return setPedestal();
+    
+  };
+  
+
+
+
+
+
+/** sets file pointer where to write the clusters to 
+    \param f file pointer
+    \returns current file pointer
+*/
+   FILE *setFilePointer(FILE *f){
+     for (int i=0; i<nThreads; i++) {
+       dets[i]->setFilePointer(f);
+       //dets[i]->setMutex(&fmutex);
+     }
+     return dets[0]->getFilePointer();
+   };
+
+/** gets file pointer where to write the clusters to 
+    \returns current file pointer
+*/
+FILE *getFilePointer(){return dets[0]->getFilePointer();};
+
+
+
+ private:
+  bool stop;
+  const int nThreads;
+  threadedAnalogDetector *dets[20];
+  analogDetector<uint16_t> *dd[20];
+  int ithread;
+  int *image;
+  int *ff;
+  double *ped;
+  pthread_mutex_t fmutex;
+};
+
+#endif
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/slsDetectorCalibration/multiThreadedDetector.h b/slsDetectorCalibration/multiThreadedDetector.h
deleted file mode 100644
index 959d75199..000000000
--- a/slsDetectorCalibration/multiThreadedDetector.h
+++ /dev/null
@@ -1,459 +0,0 @@
-#include <vector>
-#include <string>
-#include <sstream>
-#include <iomanip>
-#include <fstream>
-#include <stdio.h>
-//#include <deque>
-//#include <list>
-//#include <queue>
-#include <fstream>
-
-#include <pthread.h>
-
-#include "analogDetector.h"
-#include "circularFifo.h"
-include "etaVEL/slsInterpolation.h"
-
-
-
-
-class threadedDetector
-{
-public:
-  threadedDetector(analogDetector *d, int fs=10000) {
-    char *mem, *mm;
-    det=d;
-    fifoFree=new CircularFifo<char>(fs);
-    fifoData=new CircularFifo<char>(fs);
-    mem=(char*)malloc(fs*det->getDataSize());
-    for (int i=0; i<fs; i++) {
-      mm=mem+i*det->getDataSize();
-      fifoFree->push(mm);
-    }  
-    busy=0;
-    stop=1;
-    fMode=eFrame;
-  }
-  
-
-  virtual int setFrameMode(int fm) {if (fMode>=0) fMode=fm; return fMode;}
-
-  /* void prepareInterpolation(int &ok) { */
-  /*   cout << "-" << endl; */
-  /*   det->prepareInterpolation(ok); */
-  /* }; */
-
-  virtual int *getImage() {
-    return det->getInterpolatedImage();
-  }
-  virtual int getImageSize(int &nnx, int &nny, int &ns) {return det->getImageSize(nnx, nny, ns);};
-
-  ~threadedDetector() {StopThread(); free(mem); delete fifoFree; delete fifoData;}
-
-   /** Returns true if the thread was successfully started, false if there was an error starting the thread */
-   virtual bool StartThread()
-   { stop=0; 
-     return (pthread_create(&_thread, NULL, processData, this) == 0);
-   }
-
-   virtual void StopThread()
-   { stop=1;
-     (void) pthread_join(_thread, NULL);
-   }
-   
-
-   virtual bool pushData(char* &ptr) {
-     fifoData->push(ptr);
-   }
-   virtual bool popFree(char* &ptr) {
-     fifoFree->pop(ptr);
-   }
-
-   virtual int isBusy() {return busy;}
-   
-   //protected:
-   /** Implement this method in your subclass with the code you want your thread to run. */
-   //virtual void InternalThreadEntry() = 0;
-   virtual void *writeImage(const char * imgname) {cout << "a" <<endl; return det->writeImage(imgname);};
-
-   virtual void clearImage(){det->clearImage();};
-
-private:
-   interpolatingDetector *det;
-   int fMode;
-   int *dataSize;
-   pthread_t _thread;
-   char *mem;
-   CircularFifo<char> *fifoFree;
-   CircularFifo<char> *fifoData;
-   int stop;
-   int busy;
-   char *data;
-
-   static void * processData(void * ptr) {
-     threadedDetector *This=((threadedDetector *)ptr); 
-     return This->processData();
-   }
-   void * processData() {
-     busy=1;
-     while (!stop) {
-       if (fifoData->isEmpty()) {
-	 busy=0;
-	 usleep(100);
-       } else {
-	 busy=1;
-	 fifoData->pop(data); //blocking!
-	 det->processData(data,(frameMode)fMode);
-	 fifoFree->push(data); 
-       }
-     }
-     return NULL;
-   }
-
-
-
-};
-
-
-
-class multiThreadedDetector
-{
-public:
- multiThreadedDetector(analogDetector *d, int n, int fs=1000) : nThreads(n), ithread(0) { 
-    dd[0]=d;
-    if (nThreads==1)
-      dd[0]->setId(100);
-    else 
-      dd[0]->setId(0);
-    for (int i=1; i<nThreads; i++) {
-      dd[i]=d->Clone();
-      dd[i]->setId(i);
-    }
-    
-    for (int i=0; i<nThreads; i++) {
-      dets[i]=new threadedDetector(dd[i], fs);
-    }
-    
-    int nnx, nny, ns;
-    int nn=dets[0]->getImageSize(nnx, nny,ns);
-    image=new int[nn];
-    
-  }
-  
-  ~multiThreadedDetector() { 
-    StopThreads();
-    for (int i=0; i<nThreads; i++) 
-      delete dets[i]; 
-    for (int i=1; i<nThreads; i++) 
-      delete dd[i];
-    delete [] image;
-  }
-
-
-  int setFrameMode(int fm) { int ret; for (int i=0; i<nThreads; i++) ret=dets[i]->setFrameMode(fm); return ret;};
-
-  
-  int *getImage() {
-    int *img;
-    int nnx, nny, ns;
-    int nn=dets[0]->getImageSize(nnx, nny, ns);
-    //for (i=0; i<nn; i++) image[i]=0;
-    
-    for (int ii=0; ii<nThreads; ii++) {
-      img=dets[ii]->getImage();
-      for (int i=0; i<nn; i++) {
-	if (ii==0)
-	  image[i]=img[i];
-	else
-	  image[i]+=img[i];
-      }
-    
-    }
-    return image;
-    
-  }
-
-
-  void clearImage() {
-  
-    for (int ii=0; ii<nThreads; ii++) {
-      dets[ii]->clearImage();
-    }
-    
-  }
-
-
-
-
-
-
-
-   void *writeImage(const char * imgname) {   
-#ifdef SAVE_ALL  
-     for (int ii=0; ii<nThreads; ii++) {
-       char tit[10000];cout << "m" <<endl;
-       sprintf(tit,"/scratch/int_%d.tiff",ii);
-       dets[ii]->writeImage(tit);
-     }
-#endif
-     getImage();
-     int nnx, nny, ns;
-     int nn=dets[0]->getImageSize(nnx, nny, ns);
-     float *gm=new float[ nn];
-     if (gm) {
-       for (int ix=0; ix<nn; ix++) {
-	 gm[ix]=image[ix];
-       }
-     
-       WriteToTiff(gm,imgname ,nnx, nny); 
-       delete [] gm;
-     } else cout << "Could not allocate float image " << endl;
-     return NULL;
-   }
-  
-
-  void StartThreads() { 
-    for (int i=0; i<nThreads; i++) 
-      dets[i]->StartThread(); 
-      
-    }
-   
-
-
-  void StopThreads() { 
-    for (int i=0; i<nThreads; i++) 
-      dets[i]->StopThread(); 
-      
-    }
-
-  
-  int isBusy() {
-    int ret=0, ret1;  
-    for (int i=0; i<nThreads; i++) {
-      ret1=dets[ithread]->isBusy();
-      ret|=ret1;
-      if (ret1) cout << "thread " << i <<" still busy " << endl;
-    }
-    return ret;
-  }
-  
-   
-   bool pushData(char* &ptr) {
-     dets[ithread]->pushData(ptr);
-   }
-
-   bool popFree(char* &ptr) {
-     dets[ithread]->popFree(ptr);
-   }
-   
-   int nextThread() {
-     ithread++;
-     if (ithread==nThreads) ithread=0;
-     return ithread;
-   }
-
-   virtual void prepareInterpolation(int &ok){
-     slsInterpolation *
-     
-};
-     
-
-
-
-private:
-    bool stop;
-    const int nThreads;
-    threadedDetector *dets[20];
-    interpolatingDetector *dd[20];
-    int ithread;
-    int *image;
-  };
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-/* void *moenchProcessFrame() { */
-/*   char fname[10000]; */
-/*   strcpy(fname,"/mnt/moench_data/m03-15_mufocustube/plant_40kV_10uA/m03-15_100V_g4hg_300us_dtf_0.raw"); */
-  
-
-/*   int nph, nph1; */
-/*   single_photon_hit clusters[NR*NC]; */
-/*   // cout << "hits "<< endl; */
-/*   int etabins=550; */
-/*   double etamin=-1, etamax=2; */
-/*   int nsubpix=2; */
-/*   float *etah=new float[etabins*etabins]; */
-/*   // cout << "etah "<< endl; */
-/*   cout << "image size "<< nsubpix*nsubpix*NC*NR << endl; */
-/*   float *image=new float[nsubpix*nsubpix*NC*NR]; */
-/*   int *heta, *himage; */
-
-/*   moench03Ctb10GbT1Data *decoder=new  moench03Ctb10GbT1Data(); */
-/*   // cout << "decoder "<< endl; */
-/*   etaInterpolationPosXY *interp=new etaInterpolationPosXY(NC, NR, nsubpix, etabins, etamin, etamax); */
-/*   // cout << "interp "<< endl; */
-/*   //  linearInterpolation *interp=new linearInterpolation(NC, NR, nsubpix); */
-
-/*   interpolatingDetector *filter=new interpolatingDetector(decoder,interp, 5, 1, 0, 1000, 100); */
-/*   cout << "filter "<< endl; */
-  
-
-/*   char *buff; */
-/*   int nf=0; */
-/*   int ok=0; */
-/*   ifstream filebin; */
-/*   std::time_t end_time; */
- 
-/*   int iFrame=-1; */
-/*   int np=-1; */
-
-  
-/*   filter->newDataSet(); */
-
-
-/*   nph=0; */
-/*   nph1=0; */
-/*   int iph; */
-
-/*   cout << "file name " << fname << endl; */
-/*   filebin.open((const char *)(fname), ios::in | ios::binary); */
-/*   if (filebin.is_open()) */
-/*      cout << "Opened file " << fname<< endl; */
-/*   else */
-/*     cout << "Could not open file " << fname<< endl; */
-/*     while ((buff=decoder->readNextFrame(filebin, iFrame)) && nf<1.5E4) {   */
-/*       if (nf<9E3)  */
-/* 	; */
-/*       else if (nf<1.1E4) { */
-/*       	filter->processData(buff,eFlat); */
-/*       } else { */
-/* 	if (ok==0) { */
-/* 	  cout << "**************************************************************************"<< endl; */
-/* 	  heta=interp->getFlatField(); */
-/* 	  // for (int ii=0; ii<etabins*etabins; ii++) { */
-/* 	  //   etah[ii]=(float)heta[ii]; */
-/* 	  // } */
-
-
-/* 	  std::time(&end_time); */
-/* 	  cout << std::ctime(&end_time) << " " << nf <<  endl; */
-/* 	  // WriteToTiff(etah, "/scratch/eta.tiff", etabins, etabins); */
-	  
-/* 	  interp->prepareInterpolation(ok); */
-/* 	  cout << "**************************************************************************"<< endl; */
-/* 	  std::time(&end_time); */
-/* 	  cout << std::ctime(&end_time) << " " << nf <<  endl; */
-/* 	} */
-/* 	filter->processData(buff,eFrame); */
-/* 	  } */
-      
-/*       nph+=nph1; */
-
-/*       if (nf%1000==0) { */
-/* 	std::time(&end_time); */
-/* 	cout << std::ctime(&end_time) << " " << nf <<   endl; */
-/*       } */
-
-/*       nf++; */
-/*       delete [] buff; */
-/*       iFrame=-1; */
-/*     }  */
- 
-/*     if (filebin.is_open()) */
-/*       filebin.close();	   */
-/*     else */
-/*       cout << "could not open file " << fname << endl; */
-    
-    
-/*     himage=interp->getInterpolatedImage(); */
-/*     for (int ii=0; ii<nsubpix*nsubpix*NC*NR; ii++) { */
-/*       image[ii]=(float)himage[ii]; */
-/*     } */
-/*     WriteToTiff(image, "/scratch/int_image.tiff", nsubpix*NR, nsubpix*NC); */
-/*     delete [] etah; */
-/*     delete [] image; */
-/*     delete interp; */
-/*     delete decoder; */
-/*     cout << "Read " << nf << " frames" << endl; */
-/*     return NULL; */
-/* } */
-  
-/* int main(int argc, char *argv[]){ */
-
-/*    moenchProcessFrame(); */
-
-/* } */
diff --git a/slsDetectorCalibration/raedNoiseData.C b/slsDetectorCalibration/raedNoiseData.C
deleted file mode 100644
index b2021b29f..000000000
--- a/slsDetectorCalibration/raedNoiseData.C
+++ /dev/null
@@ -1,136 +0,0 @@
-#include "moenchReadData.C"
-
-
-
-void raedNoiseData(char *tit, int sign=1){
-
-
-
-
-
-  char fname[1000];
-  char f[1000];
-  TFile *fout;
-  THStack *hs2N;
-
-  sprintf(fname,"/data/moench_xbox_20140113/MoTarget_45kV_0_8mA_120V_%s_0.root",tit);
-  fout=new TFile(fname,"RECREATE");
-
-  sprintf(fname,"/data/moench_xbox_20140113/MoTarget_45kV_0_8mA_120V_%s_f00000%%04d000_0.raw",tit);
-
-  hs2N=moenchReadData(fname,0,3000,1500,-500,2500,1,0.,1,159,1,159, 0,1); 
-  hs2N->SetName(tit);
-  hs2N->SetTitle(tit);
-  (TH2F*)(hs2N->GetHists()->At(0))->Write();
-
- (TH2F*)(hs2N->GetHists()->At(1))->Write();
- (TH2F*)(hs2N->GetHists()->At(2))->Write();
- (TH2F*)(hs2N->GetHists()->At(3))->Write();
- (TH2F*)(hs2N->GetHists()->At(4))->Write();
-
-
-  fout->Close();
-
-
-
-}
-
-
-
-void raedNoiseDataN(char *tit, int sign=1){
-
-
-
-  char fname[1000];
-  char f[1000];
-  TFile *fout;
-  THStack *hs2N;
-
-  sprintf(fname,"/data/moench_xbox_20140116/noise_%s.root",tit);
-  fout=new TFile(fname,"RECREATE");
-
-  sprintf(fname,"/data/moench_xbox_20140116/noise_%s_f00000%%04d000_0.raw",tit);
-
-  hs2N=moenchReadData(fname,tit,0,3000,1500,-500,2500,sign,0.,1,159,1,159, 0,0); 
-  hs2N->SetName(tit);
-  hs2N->SetTitle(tit);
-  (TH2F*)(hs2N->GetHists()->At(0))->Write();
-
-  // (TH2F*)(hs2N->GetHists()->At(1))->Write();
-  // (TH2F*)(hs2N->GetHists()->At(2))->Write();
-  // (TH2F*)(hs2N->GetHists()->At(3))->Write();
-  // (TH2F*)(hs2N->GetHists()->At(4))->Write();
-
-
-  fout->Close();
-
-
-
-}
-
-
-
-void g4() {
-
-  raedNoiseData("cds_g4_low_gain");
-  raedNoiseData("cds_g4_sto1_only");
-  raedNoiseData("cds_g4_no sto");
-  
-
-
-}
-
-void no_cds() {
-
-  raedNoiseData("cds_disable_low_gain",-1);
-  raedNoiseData("cds_disable_sto1_only",-1);
-  raedNoiseData("cds_disable_no sto",-1);
-  
-
-
-}
-
-void all_gains() {
-
-  raedNoiseData("cds_g2");
-  raedNoiseData("cds_g2HC");
-  raedNoiseData("cds_g1_2");
-  raedNoiseData("cds_g2_3");
-  
-
-
-}
-
-void all_low_gains() {
-
-  raedNoiseData("cds_g2_low_gain");
-  raedNoiseData("cds_g2HC_low_gain");
-  raedNoiseData("cds_g1_2_low_gain");
-  raedNoiseData("cds_g2_3_low_gain");
-}
-
-/*
-clkdivider data
-/data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv17_f000000010000_0.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 12:40 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv25_f000000010000_0.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 13:26 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv35_f000000010000_0.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 14:09 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv50_f000000010000_0.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 14:54 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv70_f000000010000_0.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 16:42 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv110_f000000010000_0.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 17:27 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv170_f000000010000_0.raw
-*/
-
-
-/* oversampled data
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 18:12 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_0.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 18:47 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_1.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 19:22 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_2.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 20:02 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_3.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 20:41 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_4.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 21:16 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_5.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 21:56 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_6.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 22:35 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_7.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 23:11 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_8.raw
--rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 23:50 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_9.raw
-*/
-
diff --git a/slsDetectorCalibration/readJungfrauData.C b/slsDetectorCalibration/readJungfrauData.C
deleted file mode 100644
index 504a15258..000000000
--- a/slsDetectorCalibration/readJungfrauData.C
+++ /dev/null
@@ -1,31 +0,0 @@
-{ // script to run Jungfrau data analysis
-
-  gROOT->ProcessLine(".L jungfrauReadData.C++");//");
-
-  TFile *fout; 		// output file
-  THStack *hs2N; 	// collection of objects
-
-  //fout=new TFile("/mnt/slitnas/datadir_jungfrau02/analysis_tests/tests_random.root","RECREATE"); // 
-    fout=new TFile("/mnt/slitnas/datadir_jungfrau02/20140404_lowEXrays/test.root","RECREATE");
-
-  hs2N=jungfrauReadData("/mnt/slitnas/datadir_jungfrau02/20140404_lowEXrays/Ti_1000clk_13kV40mA_%d.bin","tit",0,86,3000,-499.5,2500.5,1,0,1,47,1,47,1,1); //1,1); 
-  
- //hs2N=jungfrauReadData("/mnt/slitnas/datadir_jungfrau02/20140228_GainBits/GSdata_laser_%d.bin","tit",0,5,1500,-500,2500,1,0.,1,47,1,47,0,1);//,"/mnt/slitnas/datadir_jungfrau02/analysis_tests/CalibrationParametersTest_fake.txt"); //1,1); // data set test GB -> set (3,0,0) in junfrauReadData.C
-
-  //hs2N=jungfrauReadData("/mnt/slitnas/datadir_jungfrau02/digital_bit_adc_test/vb_1825_%d.bin","tit",0,7,1500,-500,2500,1,0.,1,47,1,47,0,1);//,"/mnt/slitnas/datadir_jungfrau02/analysis_tests/CalibrationParametersTest_fake.txt"); //1,1); // data set test GB -> set (3,0,0) in junfrauReadData.C
-
-  //hs2N->SetName("cds_g4");
-  //hs2N->SetTitle("cds_g4");
-
- (TH2F*)(hs2N->GetHists()->At(0))->Write(); // write hists 
- (TH2F*)(hs2N->GetHists()->At(1))->Write();
- (TH2F*)(hs2N->GetHists()->At(2))->Write();
- (TH2F*)(hs2N->GetHists()->At(3))->Write();
- (TH2F*)(hs2N->GetHists()->At(4))->Write();
- //(TH2F*)(hs2N->GetHists()->At(5))->Write();
- //(TH2F*)(hs2N->GetHists()->At(6))->Write();
-
-  fout->Close(); // uncomment
-
-}
-
diff --git a/slsDetectorCalibration/readMoench03Data.C b/slsDetectorCalibration/readMoench03Data.C
deleted file mode 100644
index 591fe7437..000000000
--- a/slsDetectorCalibration/readMoench03Data.C
+++ /dev/null
@@ -1,366 +0,0 @@
-#include "moench03ReadData.C"
-
-
-
-void readMoench03Data(std::string path,char* tit, std::string phase, std::string wtime,int sign=1,int runmin=0, int runmax=100, int sc_num=0,int hitfinder=1){
-
-  // int runmin(150);
-  // int runmax(200);
-  int nbins(2000);
-  int hmin(-1000);
-  int hmax(3000);
-  int xmin(1);
-  int xmax(399);
-  int ymin(1);
-  int ymax(399);
-  int cmsub(0);
- 
-  
-
-
-  char fname[1000];
-  TFile *fout;
-  // TFile *fouth1;
-  THStack *hs;
-  sprintf(fname,"%s/%s_%s_%s_%d_%d_Csub%d_HF%d.root",path.c_str(),tit,phase.c_str(),wtime.c_str(),runmin,runmax-1,cmsub,hitfinder);
-  fout=new TFile(fname,"RECREATE");
-  cerr<<"creating output file:"<<endl;
-  cerr<<fname<<endl;
-  cerr<<"/****************************/"<<endl;
-
-   sprintf(fname,"%s/%s_%s_%s_f0_%%d.raw",path.c_str(),tit,phase.c_str(),wtime.c_str()); //  sprintf(fname,"%s/%s_phase%s_wtime%s_period0.075_OD%1.1f_f0_%%d.raw",path.c_str(),tit,phase.c_str(),wtime.c_str(),OD);
-
-  cerr<<fname<<endl;
-
-  // Int_t out = moench03DrawPedestals(fname,"Mo",runmin,runmax,nbins,hmin,hmax,xmin,xmax,ymin,ymax, cmsub,hitfinder); 
- 
-  fout->cd();
-  hs=moench03ReadData(fname,tit,runmin,runmax,nbins,hmin,hmax,xmin,xmax,ymin,ymax, cmsub,hitfinder); 
-
-
-  cout << "returned" << endl;
-  hs->SetName(tit);
-  hs->SetTitle(tit);
-  cout << "name/title set" << endl;
-
-  Int_t nH=1;
-
-  TH2F * h=NULL;
-
-
-  
-  if (hs->GetHists()) {
-    for (int i=0; i<nH; i++) {
-      if (hs->GetHists()->At(i)) {
-	(TH2F*)(hs->GetHists()->At(i))->Write();
-	// h->SetName(Form("h%d",i+1));
-	// h->SetTitle(Form("h%d",i+1));
-	// cerr<<h->GetEntries()<<" entries"<<endl;
-	// can->cd(i+1);
-	// h->Draw("colz");
-	// fout->cd();
-	// h->Write();
-	cout << i << " " ;
-      }
-    } 
-
-    cout << " histos written " << endl;
-  } else
-    cout << "no hists in stack " << endl;
-  if(fout->IsOpen())fout->Close();
-
-
-  return;
-
-}
-/**********************************************************/
-void readPixelCharge(std::string path,char* tit, std::string phase, std::string wtime, float OD, int sign,int runmin, int runmax, int x0, int y0){
-  char fname[1000];
-  sprintf(fname,"%s/%s_%s_%2.0fumSi_%s_f0_%%d.raw",path.c_str(),tit,phase.c_str(),OD,wtime.c_str());
-  char fnameout[1000];
-  sprintf(fnameout,"%s/%s_%s_%2.0fumSi_%s.root",path.c_str(),tit,phase.c_str(),OD,wtime.c_str());
-  // sprintf(fnameout,"%s/%s_phase%s_wtime%s_period0.2_OD%1.1f.root",path.c_str(),tit,phase.c_str(),wtime.c_str(),OD);
-  TFile * fout = new TFile(fnameout,"recreate");
-
-  for(int i=0; i<12; i++){
-    TH1F * hpix = SinglePixelHisto(fname,15000,-0.5,29999.5,runmin,runmax,x0+i,y0);
-    hpix->SetName(Form("h_%d_%d",x0+i,y0));
-    fout->cd();
-    hpix->Write();
-  }
-
-
-  return;
-}
-/*************************************************/
-void LoopOnPixelCharge(std::string path,char* tit, std::string phase, std::string wtime, int sign,int runmin, int runmax, int x0, int y0){
-  float OD=700;
-
-  for(int i=0; i<6; i++){
-    readPixelCharge(path,tit,phase,wtime,OD,sign,runmin,runmax,x0,y0);
-    OD += 200;
-  }
-  return;
-}
-
-/**********************************************************/
-void readPixelCorrelation(std::string path,char* tit, std::string frame, std::string phase, std::string wtime,int sign,int runmin, int runmax,int supercolumn){
-
-  int npx(400);
-  int npy(400);
-
-  char fname[1000];
-  int sc_width(25);
-  int sc_height(200);
-  int sc_number=supercolumn;
-  int xmin(0);
-  int xmax(0);
-  int ymin(0);
-  int ymax(0);
-
-
-  ADCMap * map = new ADCMap(npx,npy,sc_width,sc_height);
-  int ret = map->Init();
-  
-  xmin=map->getXmin(sc_number);
-  xmax=map->getXmax(sc_number);
-  ymin=map->getYmin(sc_number);
-  ymax=map->getYmax(sc_number);
-
-  cerr<<"/**********************************/"<<endl;
-  cerr<<"Checking super column "<<sc_number<<endl;
-  cerr<<"x: "<<map->getXmin(sc_number)<<" - "<<map->getXmax(sc_number)<<endl;
-  cerr<<"y: "<<map->getYmin(sc_number)<<" - "<<map->getYmax(sc_number)<<endl;
-  cerr<<"/**********************************/"<<endl;
-
-
-
-
-  char fnameout[1000];
-  sprintf(fnameout,"%s/%s_wtime%s_%d_%d_Corr_SC%d.root",path.c_str(),tit,wtime.c_str(),runmin,runmax-1,sc_number);
-  TFile * fout = new TFile(fnameout,"recreate");
-  Int_t nbins(3000);
-  Float_t xlow(6999.5);
-  Float_t xup(9999.5);
-  TH2F * hcorr=NULL;
-  for(int i=0; i<25; i++){
-    phase.clear();
-    phase=(std::string)Form("%d",i*5);
-    cerr<<"check ADC phase "<<phase.c_str()<<endl;
-
-    sprintf(fname,"%s/%s_phase%s_wtime%s_period0.075_f0_%%d.raw",path.c_str(),tit,phase.c_str(),wtime.c_str());
-  // TH1F * h1 = new TH1F("h1",Form("ch%d",nchan1),nbins,xlow,xup);
-  // TH1F * h2 = new TH1F("h2",Form("ch%d",nchan2),nbins,xlow,xup);
-
-    hcorr= new TH2F(Form("hcorr_ph%s",phase.c_str()),Form("hcorr_ph%s",phase.c_str()),nbins,xlow,xup,nbins,xlow,xup);
-
-    DrawAllPixelCorrelation(fname,frame,runmin,runmax,xmin,xmax,ymin,ymax,sc_width,hcorr);
-  // h1->GetXaxis()->SetTitle("ADC");
-  // h2->GetXaxis()->SetTitle("ADC");
-  
-
-
-  fout->cd();
-  // h1->Write();
-  // h2->Write();
-  hcorr->Write();
-  }
-  return;
-  fout->Close();
-}
-
-
-/****************************************************/
-void readNoise(std::string path, char *tit, std::string flag, std::string phase, std::string wtime,float OD,int sign,int runmin, int runmax){
-  TFile * fout = new TFile(Form("%s/%s_%s_%s_noiseMap%s.root",path.c_str(),tit,phase.c_str(),wtime.c_str(),flag.c_str()),"recreate");
-  char fname[1000];
-  int nfiles=runmax-runmin;
-  // int runmin(382);
-  // int runmax(442);
-  // std::string target("Cu");
-  
-
-
-  // THStack * hsnoise = NULL;
-  TH2F * hped=NULL;
-  TH2F * hnoise=NULL;
-  // for(int i=0; i<25; i++){
-  //   phase.clear();
-    // phase=(std::string)Form("%d",i*5);
-  //    sprintf(fname,"%s/%s_phase%s_wtime%s_period0.2_OD%1.1f_f0_%%d.raw",path.c_str(),tit,phase.c_str(),wtime.c_str(),OD); 
-    // sprintf(fname,"%s/%s_phase%s_wtime%s_period0.2_f0_%%d.raw",path.c_str(),tit,phase.c_str(),wtime.c_str()); 
-  sprintf(fname,"%s/%s_%s_%s_f0_%%d.raw",path.c_str(),tit,phase.c_str(),wtime.c_str()); 
-    THStack * hsnoise=calcNoise(fname,flag,runmin,runmax,nfiles);
-    hsnoise->SetName(Form("%s_noiseMap_ph%s",tit,phase.c_str()));
-
-    fout->cd();
-
-    if (hsnoise->GetHists()) {
-      hped=(TH2F*)(hsnoise->GetHists()->At(0));
-      hped->SetName(Form("hped_ph%s",phase.c_str()));
-      hped->Write();
-      hnoise=(TH2F*)(hsnoise->GetHists()->At(1));
-      hnoise->SetName(Form("hnoise_ph%s",phase.c_str()));
-      hnoise->Write();
-      cout << " histos written for ADC Phase " << phase.c_str()<<endl;
-    } else
-      cout << "no hists in stack " << endl;
-    delete hsnoise;
-
-  // }
-
-
-
-  fout->Close();
-  return;
-
-
-}
-/************************************************************************/
-void readFrames(std::string path, char *tit, std::string phase, std::string wtime,int sign,int runnum, int framemin, int framemax){
-  char fformat[1000];
-  char fname[1000];
-  sprintf(fformat,"%s/%s_phase%s_wtime%s_period0.075_f0_%d.raw",path.c_str(),tit,phase.c_str(),wtime.c_str(),runnum);
-  THStack * hs = DrawFrames(fformat,framemin,framemax);
-  int nframes=framemax-framemin;
-  TFile * fout = new TFile(Form("%s/Frames_phase%s_wtime%s_period0.075_f0_%d_fr%d-%d.root",path.c_str(),phase.c_str(),wtime.c_str(),runnum,framemin,framemax),"recreate");
-
-  TCanvas * c1= new TCanvas("c1","",800,600);
-  c1->Print(Form("%s/Frames_phase%s_wtime%s_period0.075_f0_%d_fr%d-%d.pdf[",path.c_str(),phase.c_str(),wtime.c_str(),runnum,framemin,framemax));
-  TH2F * h=NULL;
-
-  for(int hnum=0; hnum<nframes; hnum++){
-    h=(TH2F*)hs->GetHists()->At(hnum);
-    h->SetName(Form("h_%d",hnum+framemin));
-    h->SetTitle(Form("h_%d",hnum+framemin));
-    h->GetZaxis()->SetRangeUser(5000.,10000.);
-    h->Draw("colz");
-    
-
-    c1->Print(Form("%s/Frames_phase%s_wtime%s_period0.075_f0_%d_fr%d-%d.pdf",path.c_str(),phase.c_str(),wtime.c_str(),runnum,framemin,framemax));
-    fout->cd();
-    h->Write();
-
-
-  }
-
-  c1->Print(Form("%s/Frames_phase%s_wtime%s_period0.075_f0_%d_fr%d-%d.pdf]",path.c_str(),phase.c_str(),wtime.c_str(),runnum,framemin,framemax));
-
-  fout->Close();
-
-  return;
-
-}
-/************************************************************************************/
-void PlotSinglePixelHisto(std::string path, char *tit, std::string flag, std::string phase, std::string wtime,float OD,int sign,int runmin, int runmax, int x0, int y0){
-  char fname[1000];
-  sprintf(fname,"%s/%s_%s_%s_f0_%%d.raw",path.c_str(),tit,phase.c_str(),wtime.c_str());
-
-  int nbins(8000);
-  float xmin(-0.5);
-  float xmax(15999.5);
-  
-  TH1F * h1 = SinglePixelHisto(fname,nbins,xmin,xmax,runmin,runmax,x0,y0);
-  h1->Draw("hist");
-
-
-  return;
-
-}
-// void raedNoiseDataN(char *tit, int sign=1){
-
-
-
-//   char fname[1000];
-//   char f[1000];
-//   TFile *fout;
-//   THStack *hs2N;
-
-//   sprintf(fname,"/data/moench_xbox_20140116/noise_%s.root",tit);
-//   fout=new TFile(fname,"RECREATE");
-
-//   sprintf(fname,"/data/moench_xbox_20140116/noise_%s_f00000%%04d000_0.raw",tit);
-
-//   hs2N=moenchReadData(fname,tit,0,3000,1500,-500,2500,sign,0.,1,159,1,159, 0,0); 
-//   hs2N->SetName(tit);
-//   hs2N->SetTitle(tit);
-//   (TH2F*)(hs2N->GetHists()->At(0))->Write();
-
-//   // (TH2F*)(hs2N->GetHists()->At(1))->Write();
-//   // (TH2F*)(hs2N->GetHists()->At(2))->Write();
-//   // (TH2F*)(hs2N->GetHists()->At(3))->Write();
-//   // (TH2F*)(hs2N->GetHists()->At(4))->Write();
-
-
-//   fout->Close();
-
-
-
-// }
-
-
-
-// void g4() {
-
-//   raedNoiseData("cds_g4_low_gain");
-//   raedNoiseData("cds_g4_sto1_only");
-//   raedNoiseData("cds_g4_no sto");
-  
-
-
-// }
-
-// void no_cds() {
-
-//   raedNoiseData("cds_disable_low_gain",-1);
-//   raedNoiseData("cds_disable_sto1_only",-1);
-//   raedNoiseData("cds_disable_no sto",-1);
-  
-
-
-// }
-
-// void all_gains() {
-
-//   raedNoiseData("cds_g2");
-//   raedNoiseData("cds_g2HC");
-//   raedNoiseData("cds_g1_2");
-//   raedNoiseData("cds_g2_3");
-  
-
-
-// }
-
-// void all_low_gains() {
-
-//   raedNoiseData("cds_g2_low_gain");
-//   raedNoiseData("cds_g2HC_low_gain");
-//   raedNoiseData("cds_g1_2_low_gain");
-//   raedNoiseData("cds_g2_3_low_gain");
-// }
-
-// /*
-// clkdivider data
-// /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv17_f000000010000_0.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 12:40 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv25_f000000010000_0.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 13:26 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv35_f000000010000_0.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 14:09 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv50_f000000010000_0.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 14:54 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv70_f000000010000_0.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 16:42 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv110_f000000010000_0.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 17:27 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_cds_g1_clkdiv170_f000000010000_0.raw
-// */
-
-
-// /* oversampled data
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 18:12 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_0.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 18:47 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_1.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 19:22 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_2.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 20:02 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_3.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 20:41 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_4.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 21:16 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_5.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 21:56 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_6.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 22:35 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_7.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 23:11 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_8.raw
-// -rw-rw-r-- 1 l_msdetect l_msdetect 51440000 Jan 14 23:50 /data/moench_xbox_20140114/MoTarget_45kV_0_8mA_12us_120V_os10_16rows_f000000010000_9.raw
-// */
-
diff --git a/slsDetectorCalibration/singlePhotonDetector.h b/slsDetectorCalibration/singlePhotonDetector.h
index 4e9f81123..8d46b6871 100644
--- a/slsDetectorCalibration/singlePhotonDetector.h
+++ b/slsDetectorCalibration/singlePhotonDetector.h
@@ -16,13 +16,14 @@
 
 #ifndef EVTYPE_DEF
 #define EVTYPE_DEF
+/** enum to define the even types */
 enum eventType {
-  PEDESTAL=0,
-  NEIGHBOUR=1,
-  PHOTON=2,
-  PHOTON_MAX=3,
-  NEGATIVE_PEDESTAL=4,
-  UNDEFINED_EVENT=-1
+  PEDESTAL=0, /** pedestal */
+  NEIGHBOUR=1, /** neighbour i.e. below threshold, but in the cluster of a photon */
+  PHOTON=2, /** photon i.e. above threshold */
+  PHOTON_MAX=3, /** maximum of a cluster satisfying the photon conditions */
+  NEGATIVE_PEDESTAL=4, /** negative value, will not be accounted for as pedestal in order to avoid drift of the pedestal towards negative values */
+  UNDEFINED_EVENT=-1 /** undefined */
 };
 #endif
 
@@ -70,26 +71,31 @@ public analogDetector<uint16_t> {
     if (ny==1)
       clusterSizeY=1;
 
-    cluster=new single_photon_hit(clusterSize,clusterSizeY);
+    // cluster=new single_photon_hit(clusterSize,clusterSizeY);
+    clusters=new single_photon_hit[nx*ny];
+   
+    cluster=clusters;
     setClusterSize(csize);
-    
+    nphTot=0;
+    nphFrame=0;
   };
     /**
-       destructor. Deletes the cluster structure and the pdestalSubtraction array
+       destructor. Deletes the cluster structure, the pdestalSubtraction and the image array
     */
   virtual ~singlePhotonDetector() {delete cluster; for (int i=0; i<ny; i++) delete [] eventMask[i]; delete [] eventMask; };
 
     
   
-    /* /\** resets the eventMask to undefined and the commonModeSubtraction *\/ */
-    /* void newFrame(){analogDetector::newFrame(); for (int iy=0; iy<ny; iy++) for (int ix=0; ix<nx; ix++) eventMask[iy][ix]=UNDEFINED_EVENT; }; */
-
-    
+  /**
+     copy constructor
+     \param orig detector to be copied
+     
+  */
  
  singlePhotonDetector(singlePhotonDetector *orig) : analogDetector<uint16_t>(orig) {
 
     nDark=orig->nDark;
-    
+    myFile=orig->myFile;
     
     eventMask=new eventType*[ny];
     for (int i=0; i<ny; i++) {
@@ -100,16 +106,29 @@ public analogDetector<uint16_t> {
     nSigma=orig->nSigma;
     clusterSize=orig->clusterSize;
     clusterSizeY=orig->clusterSizeY;
-    cluster=new single_photon_hit(clusterSize,clusterSizeY);
+    // cluster=new single_photon_hit(clusterSize,clusterSizeY);
+    clusters=new single_photon_hit[nx*ny];
 
+    cluster=clusters;
+    
+    setClusterSize(clusterSize);
+    
     quad=UNDEFINED_QUADRANT;
     tot=0;
     quadTot=0;
     gmap=orig->gmap;
+    nphTot=0;
+    nphFrame=0;
 
   }
   
 
+  
+  /**
+     duplicates the detector structure
+     \returns new single photon detector with same parameters
+     
+  */
   virtual singlePhotonDetector *Clone() {
     return new singlePhotonDetector(this);
   }
@@ -130,17 +149,29 @@ public analogDetector<uint16_t> {
 	clusterSize=n;
 	if (cluster)
 	  delete cluster;
-	if (ny>1)
+	if (ny>clusterSize)
 	  clusterSizeY=clusterSize;
-	cluster=new single_photon_hit(clusterSize,clusterSizeY);
+	else
+	  clusterSizeY=1;
+	for (int ip=0; ip<nx*ny; ip++)
+	  (clusters+ip)->set_cluster_size(clusterSize,clusterSizeY);
+	    //cluster=new single_photon_hit(clusterSize,clusterSizeY);
       }
       return clusterSize;
     }
 
 
 
-    virtual int *getNPhotons(char *data, double thr=-1, int *nph=NULL) {
-      
+    /**
+       converts the image into number of photons
+       \param data pointer to data
+       \param nph pointer where to add the calculated photons. If NULL, the internal image will be used
+       \returns array with data converted into number of photons.
+    */
+    
+    virtual int *getNPhotons(char *data,  int *nph=NULL) {
+
+      nphFrame=0;
       double val;
       if (nph==NULL)
 	nph=image;
@@ -174,50 +205,25 @@ public analogDetector<uint16_t> {
 	return nph;
       }	else {
 	if (thr>0) {
-	cout << "threshold" << endl;
-	for (int ix=0; ix<nx; ix++) {
-	  for (int iy=0; iy<ny; iy++) {
-	    //	cout << id << " " << ix << " " << iy << endl;
-	    
-	    if (gmap) {
-	      g=gmap[iy*nx+ix];
-	      if (g==0) g=-1.;
+	 
+	  for (int ix=xmin; ix<xmax; ix++) {
+	    for (int iy=ymin; iy<ymax; iy++) {
+	      
+	      val=subtractPedestal(data,ix,iy);
+	      
+	      nn=analogDetector<uint16_t>::getNPhotons(data,ix,iy);
+	      nph[ix+nx*iy]+=nn;
+	      rest[iy][ix]=(val-nn*tthr);
+	      
 	    }
-	    
-
-	    //return UNDEFINED_EVENT;
-    
-	    val=subtractPedestal(data,ix,iy);
-	    
-	    
-	    /* if (thr<=0) { */
-	      
-	    /*   tthr=nSigma*getPedestalRMS(ix,iy)/g; */
-	      
-	    /* } */
-	    
-	    /*  */
-		  nn=analogDetector<uint16_t>::getNPhotons(data,ix,iy,tthr);
-		  nph[ix+nx*iy]+=nn;
-		  rest[iy][ix]=(val-nn*tthr);
-	    
 	  }
-	}
-	}
-	for (int ix=0; ix<nx; ix++) {
-	  for (int iy=0; iy<ny; iy++) {
+	  //	}
+	for (int ix=xmin; ix<xmax; ix++) {
+	  for (int iy=ymin; iy<ymax; iy++) {
 	    
 	    //  for (int ix=clusterSize/2; ix<clusterSize/2-1; ix++) {
 	    // for (int iy=clusterSizeY/2; iy<ny-clusterSizeY/2; iy++) {
 	    eventMask[iy][ix]=PEDESTAL;
-	    
-	    if (thr<=0) {
-	      tthr=nSigma*getPedestalRMS(ix,iy)/g;
-	      if (ix==0 || iy==0)
-		rest[iy][ix]=subtractPedestal(data,ix,iy);
-	     
-	    }
-	    
 	    max=0;
 	    tl=0;
 	    tr=0;
@@ -231,9 +237,7 @@ public analogDetector<uint16_t> {
 		if ((iy+ir)>=0 && (iy+ir)<ny && (ix+ic)>=0 && (ix+ic)<nx) {
 		  //cluster->set_data(rest[iy+ir][ix+ic], ic, ir);
 		  
-		  if (thr<=0 && ir>=0 && ic>=0 ) 
-		    rest[iy+ir][ix+ic]=subtractPedestal(data,ix+ic,iy+ir);
-		  
+		
 		  v=rest[iy+ir][ix+ic];//cluster->get_data(ic,ir);
 		  tot+=v;
 		  
@@ -257,10 +261,7 @@ public analogDetector<uint16_t> {
 		}
 	      }
 	    }
-	    if (rest[iy][ix]<=-tthr) {
-	      eventMask[iy][ix]=NEGATIVE_PEDESTAL;
-	      //if (cluster->get_data(0,0)>=max) {
-	    } else if (rest[iy][ix]>=max) { 
+	    if (rest[iy][ix]>=max) { 
 	      if (bl>=br && bl>=tl && bl>=tr) {
 		quad=BOTTOM_LEFT;
 		quadTot=bl;
@@ -275,35 +276,21 @@ public analogDetector<uint16_t> {
 		quadTot=tr;
 	      }
 	      if (max>tthr || tot>sqrt(ccy*ccs)*tthr || quadTot>sqrt(cy*cs)*tthr) {
-	      /* 	cout << ix << " " << iy << " " << rest[iy][ix] <<" " <<  tot << " " << quadTot << endl; */
-	      /* 	 for (int ir=-(clusterSizeY/2); ir<(clusterSizeY/2)+1; ir++) { */
-	      /* for (int ic=-(clusterSize/2); ic<(clusterSize/2)+1; ic++) */
-	      /* 	cout << rest[iy+ir][ix+ic] << " " ; */
-	      /* cout << endl; */
-	      /* 	 } */
 		eventMask[iy][ix]=PHOTON;
 		nph[ix+nx*iy]++;
-		// rest[iy][ix]-=tthr;
-	      } //else if (thr<=0 ) {
-		//addToPedestal(data,ix,iy);
-	      // }
-	    }
-	    if (thr<0 && eventMask[iy][ix]==PEDESTAL) {
-	      addToPedestal(data,ix,iy);
+		nphFrame+=nph[ix+nx*iy];
+		nphTot+=nph[ix+nx*iy];
+		
+	      } 
 	    }
 	  }
 	}
+	
+	return nph;
+	} else return getClusters(data);
       }
-      
-      //	}
-      // }
-      
-      
-      
-      return nph;
-
-    }
-
+      return NULL;
+    };
 
 
     /** finds event type for pixel and fills cluster structure. The algorithm loops only if the evenMask for this pixel is still undefined.
@@ -415,7 +402,16 @@ public analogDetector<uint16_t> {
   };
 
 
-int getClusters(char *data, single_photon_hit *clusters) {
+
+
+/**
+   Loops in the region of interest to find the clusters
+   \param data pointer to the data structure
+   \returns number of clusters found
+
+ */
+
+int *getClusters(char *data) {
 
  
   int nph=0;
@@ -431,8 +427,8 @@ int getClusters(char *data, single_photon_hit *clusters) {
     return 0;
   }
   newFrame();
-  for (int ix=0; ix<nx; ix++) {
-    for (int iy=0; iy<ny; iy++) {
+  for (int ix=xmin; ix<xmax; ix++) {
+    for (int iy=ymin; iy<ymax; iy++) {
       
       max=0;
       tl=0;
@@ -502,6 +498,7 @@ int getClusters(char *data, single_photon_hit *clusters) {
 	  (clusters+nph)->tot=tot;
 	  (clusters+nph)->x=ix;
 	  (clusters+nph)->y=iy;
+	  (clusters+nph)->iframe=det->getFrameNumber(data);
 	  (clusters+nph)->ped=getPedestal(ix,iy,0);
 	  for (int ir=-(clusterSizeY/2); ir<(clusterSizeY/2)+1; ir++) {
 	    for (int ic=-(clusterSize/2); ic<(clusterSize/2)+1; ic++) {
@@ -509,7 +506,7 @@ int getClusters(char *data, single_photon_hit *clusters) {
 	    }
 	  }
 	  nph++;
-
+	  image[iy*nx+ix]++;
 
 	  } else {
 	    eventMask[iy][ix]=PHOTON;
@@ -521,8 +518,12 @@ int getClusters(char *data, single_photon_hit *clusters) {
 
     }
   }
-
-  return  nph;
+  nphFrame=nph;
+  nphTot+=nph;
+  //cout << nphFrame << endl;
+  // cout <<"**********************************"<< endl;
+  writeClusters();
+  return  image;
   
 };
 
@@ -593,27 +594,46 @@ int getClusters(char *data, single_photon_hit *clusters) {
       return tall;
     };
 #else
-    /** write cluster to filer*/
-    void writeCluster(FILE* myFile){cluster->write(myFile);};
+/** write cluster to filer
+     \param f file pointer
+*/
+    void writeCluster(FILE* f){cluster->write(f);};
 
+/** 
+    write clusters to file
+    \param f file pointer
+    \param clusters array of clusters structures
+    \param nph number of clusters to be written to file
+
+*/
+
+static void writeClusters(FILE *f, single_photon_hit *clusters, int nph){for (int i=0; i<nph; i++) (clusters+i)->write(f);};
+void writeClusters(FILE *f){for (int i=0; i<nphFrame; i++) (clusters+i)->write(f);};
+ void writeClusters(){if (myFile) {  
+     //cout << "++" << endl;  
+     pthread_mutex_lock(fm);
+     for (int i=0; i<nphFrame; i++) 
+       (clusters+i)->write(myFile);
+     pthread_mutex_unlock(fm); 
+     //cout << "--" << endl; 
+   } 
+ };
 #endif
 
-    virtual void processData(char *data, frameMode i=eFrame, int *val=NULL) {
+    virtual void processData(char *data, int *val=NULL) {
       // cout << "sp" << endl;
-      switch(i) {
+      switch(fMode) {
       case ePedestal:
 	addToPedestal(data);
 	break;
       default:
-	getNPhotons(data,-1,val);
+	getNPhotons(data,val);
       }
       iframe++;
       //	cout << "done" << endl;
     };
 
-
  protected:
-  
 
     int nDark; /**< number of frames to be used at the beginning of the dataset to calculate pedestal without applying photon discrimination */
     eventType **eventMask; /**< matrix of event type or each pixel */
@@ -621,12 +641,15 @@ int getClusters(char *data, single_photon_hit *clusters) {
     int clusterSize; /**< cluster size in the x direction */
     int clusterSizeY; /**< cluster size in the y direction i.e. 1 for strips, clusterSize for pixels */
     single_photon_hit *cluster; /**< single photon hit data structure */
+    single_photon_hit *clusters; /**< single photon hit data structure */
     quadrant quad; /**< quadrant where the photon is located */
     double tot; /**< sum of the 3x3 cluster */
     double quadTot; /**< sum of the maximum 2x2cluster */
+    int nphTot;
+    int nphFrame;
 
 
-};
+    };
 
 
 
diff --git a/slsDetectorCalibration/single_photon_hit.h b/slsDetectorCalibration/single_photon_hit.h
index ba06c363a..c992123d8 100644
--- a/slsDetectorCalibration/single_photon_hit.h
+++ b/slsDetectorCalibration/single_photon_hit.h
@@ -33,13 +33,24 @@ class single_photon_hit {
   /** binary write to file of all elements of the structure, except size of the cluster
       \param myFile file descriptor
   */
-  void write(FILE *myFile) {fwrite((void*)this, 1, 3*sizeof(int)+4*sizeof(double)+sizeof(quad), myFile); fwrite((void*)data, 1, dx*dy*sizeof(double), myFile);};   
+  size_t write(FILE *myFile) {
+    //fwrite((void*)this, 1, 3*sizeof(int)+4*sizeof(double)+sizeof(quad), myFile); 
+    if (fwrite((void*)this, 1, 3*sizeof(int), myFile)) 
+      return fwrite((void*)data, 1, dx*dy*sizeof(double), myFile);
+    return 0;
+  };   
   
   /** 
       binary read from file of all elements of the structure, except size of the cluster. The structure is then filled with those args
       \param myFile file descriptor
   */
-  void read(FILE *myFile) {fread((void*)this, 1,  3*sizeof(int)+4*sizeof(double)+sizeof(quad), myFile); fread((void*)data, 1, dx*dy*sizeof(double), myFile);};
+  size_t read(FILE *myFile) {
+    //fread((void*)this, 1,  3*sizeof(int)+4*sizeof(double)+sizeof(quad), myFile); 
+    
+    if (fread((void*)this, 1,  3*sizeof(int), myFile))  
+      return fread((void*)data, 1, dx*dy*sizeof(double), myFile);
+    return 0;
+  };
 
     /** 
 	assign the value to the element of the cluster matrix, with relative coordinates where the center of the cluster is (0,0)
@@ -49,6 +60,9 @@ class single_photon_hit {
   */
   void set_data(double v, int ix, int iy=0){data[(iy+dy/2)*dx+ix+dx/2]=v;};
 
+  void set_cluster_size(int nx, int ny) {if (nx>0) dx=nx; if (ny>0) dy=ny; delete [] data; data=new double[dx*dy];};
+  void get_cluster_size(int &nx, int &ny) {nx=dx; ny=dy;};
+  void get_pixel(int &x1, int &y1) {x1=x; y1=y;};
 
     /** 
 	gets the value to the element of the cluster matrix, with relative coordinates where the center of the cluster is (0,0)
@@ -58,16 +72,17 @@ class single_photon_hit {
   */
   double get_data(int ix, int iy=0){return data[(iy+dy/2)*dx+ix+dx/2];};
   double *get_cluster() {return data;};
+
+  int	iframe; 	        /**< frame number */
   int 	x; 			/**< x-coordinate of the center of hit */
   int	y; 			/**< x-coordinate of the center of hit */
   double	rms; 		/**< noise of central pixel l -- at some point it can be removed*/
   double 	ped; 		/**< pedestal of the central pixel -- at some point it can be removed*/
-  int	iframe; 	        /**< frame number */
-  const int dx;	                /**< size of data cluster in x */
-  const int dy;                 /**< size of data cluster in y */   
-  quadrant quad; /**< quadrant where the photon is located */
-  double tot; /**< sum of the 3x3 cluster */
-  double quadTot; /**< sum of the maximum 2x2cluster */
+   double tot; /**< sum of the 3x3 cluster */
+   quadrant quad; /**< quadrant where the photon is located */
+   double quadTot; /**< sum of the maximum 2x2cluster */ 
+  int dx;	                /**< size of data cluster in x */
+  int dy;                 /**< size of data cluster in y */  
   double *data;		        /**< pointer to data */
 };
 
diff --git a/slsDetectorCalibration/slsDetectorCalibration.doxy b/slsDetectorCalibration/slsDetectorCalibration.doxy
index a1d50fe5b..4ea3784d3 100644
--- a/slsDetectorCalibration/slsDetectorCalibration.doxy
+++ b/slsDetectorCalibration/slsDetectorCalibration.doxy
@@ -80,8 +80,24 @@ LATEX_HIDE_INDICES = YES
 
 PREDEFINED           = __cplusplus
 
-INPUT		= analogDetector.h pedestalSubtraction.h MovingStat.h singlePhotonDetector.h interpolatingDetector.h tiffIO.h single_photon_hit.h slsDetectorData.h moench03Ctb10GbT1Data.h moench03TCtbData.h moench03T1CtbData.h moench03CtbData.h moench03Ctb10GbData.h moench03TCtb10GbData.h Mythen3_01_jctbData.h adcSar2_jctbData.h eigerHalfModuleData.h energyCalibration.h slsReceiverData.h gotthardModuleData.h gotthardShortModuleData.h jungfrau02Data.h jungfrau10ModuleData.h moench02Ctb10GbData.h moench02CtbData.h moench02ModuleData.h moench03CommonMode.h moenchCommonMode.h chiptestBoardData.h commonModeSubtraction.h RunningStat.h etaVEL/etaInterpolationBase.h etaVEL/slsInterpolation.h etaVEL/etaInterpolationPosXY.h etaVEL/linearInterpolation.h etaVEL/noInterpolation.h etaVEL/etaInterpolationGlobal.h etaVEL/interpolation_EtaVEL.h etaVEL/EtaVEL.h etaVEL/iterativeEtaInterpolation.h multiThreadedDetector.h moench03T1ZmqData.h	
+INPUT		= analogDetector.h \
+		pedestalSubtraction.h \ 
+		MovingStat.h  \
+		singlePhotonDetector.h  \
+		interpolatingDetector.h tiffIO.h \
+		single_photon_hit.h \
+		dataStructures/slsDetectorData.h \
+		commonModeSubtraction.h \			 
+		RunningStat.h \
+		interpolations/etaInterpolationBase.h \
+		interpolations/slsInterpolation.h \
+		interpolations/etaInterpolationPosXY.h \
+		interpolations/linearInterpolation.h \
+		interpolations/noInterpolation.h \
+		interpolations/etaInterpolationGlobal.h \
+		multiThreadedAnalogDetector.h 
 				
 			
 OUTPUT_DIRECTORY = slsDetectorCalibrationDocs
 
+#moench03Ctb10GbT1Data.h moench03TCtbData.h moench03T1CtbData.h moench03CtbData.h moench03Ctb10GbData.h moench03TCtb10GbData.h Mythen3_01_jctbData.h adcSar2_jctbData.h eigerHalfModuleData.h energyCalibration.h slsReceiverData.h gotthardModuleData.h gotthardShortModuleData.h jungfrau02Data.h jungfrau10ModuleData.h moench02Ctb10GbData.h moench02CtbData.h moench02ModuleData.h moench03CommonMode.h moenchCommonMode.h chiptestBoardData.h interpolation/etaVEL/interpolation_EtaVEL.h interpolation/etaVEL/EtaVEL.h etaVEL/iterativeEtaInterpolation.h dataStructures/moench03T1ZmqData.h	
\ No newline at end of file
diff --git a/slsDetectorCalibration/viewMoenchDRXRays.C b/slsDetectorCalibration/viewMoenchDRXRays.C
deleted file mode 100644
index 7df5b926e..000000000
--- a/slsDetectorCalibration/viewMoenchDRXRays.C
+++ /dev/null
@@ -1,178 +0,0 @@
-
-#define MYROOT1
-
-#include <TH1D.h>
-#include <TF1.h>
-#include <TH2D.h>
-#include <TPad.h>
-#include <TDirectory.h>
-#include <TEntryList.h>
-#include <TFile.h>
-#include <TMath.h>
-#include <TTree.h>
-#include <TChain.h>
-#include <THStack.h>
-#include <TCanvas.h>
-#include <stdio.h>
-#include <fstream>
-#include "moench03CtbData.h"
-//#include "moench03CommonMode.h"
-//#include "singlePhotonDetector.h"
-
-
-using namespace std;
-
-
-THStack *viewMoenchDRXRays(int ix=70, int iy=88){
-
-  TF1 *poiss = new TF1("poiss", "[0]*TMath::Power(([1]/[2]),(x/[2]))*(TMath::Exp( ([1]/[2])))/TMath::Gamma((x/[2])+1)", 0, 5);
-
-
-  int thick[]={1700,1500,1300,1100,900,700};
-  int nt=6;
-  int nf=5;
-  char fname[1000];
-  char *data;
-  char tit[100];
-  TH1F *hh[nt], *hh3[nt], *hh5[nt];
-  TH2F *h2[nt], *hpix[nt];
-  Double_t val, val3, val5, val1;
-  int it=0;
-  Double_t ped[25];
-  TH1D *p;
-
-  THStack *hs=new THStack();
-  cout << nt << endl;
-  ifstream filebin;
-  moench03CtbData *decoder=new moench03CtbData();
-
-  sprintf(tit,"hpix_%dumSi_g1",thick[it]);
-  cout << tit << endl;
-
-
-  hpix[it]=new TH2F(tit,tit,2500,6000,16000,25,0,25);
-    hs->Add(hpix[it]);
-  
-    sprintf(tit,"%dumSi_g1",thick[it]);
-    cout << tit << endl;
-
-    for (int iff=0; iff<nf; iff++) {
-      // cout << tit << " " << iff << endl;
-      sprintf(fname,"/mnt/moench/Moench03_MS_20150606/direct_beam_12.4keV_filter_scan/direct_beam_12.4keV_%s_400clk_f0_%d.raw",tit,iff);
-      
-      filebin.open((const char *)(fname), ios::in | ios::binary);
-      if (filebin.is_open()) cout << "ok "<< fname << endl;
-      else  cout << "could not open "<< fname << endl;
-      
-      while ((data=decoder->readNextFrame(filebin))) {
-	
-	for (int iiy=-2; iiy<3; iiy++)
-	  for (int iix=-2; iix<3; iix++)
-	    hpix[it]->Fill(decoder->getChannel(data,ix+iix,iy+iiy), (iiy+2)*5+iix+2);
-	
-	delete [] data;
-      }
-      filebin.close();
-      cout << endl;
-      
-      
-      
-    }
-   
-
-	for (int iix=-2; iix<3; iix++) {
-	for (int iiy=-2; iiy<3; iiy++) {
-	  cout << iix << " " << iiy << " " ;// <<endl;
-	  p=hpix[0]->ProjectionX("p",(iiy+2)*5+iix+2+1,(2+iiy)*5+iix+2+1);
-
-	  ped[(iiy+2)*5+iix+2]=p->GetBinCenter(p->GetMaximumBin());
-
-	   cout << ped[(iiy+2)*5+iix+2] <<endl; 
-	}
-	}
-
-
-
-    for (it=0; it<nt; it++) {
-
-    sprintf(tit,"hh_%dumSi_g1",thick[it]);
-    cout << tit << endl;
-    hh[it]=new TH1F(tit,tit,5000,0,10000);
-    hs->Add(hh[it]);
-    sprintf(tit,"hh3_%dumSi_g1",thick[it]);
-    hh3[it]=new TH1F(tit,tit,5000,0,30000);
-    hs->Add(hh3[it]);
-
-    sprintf(tit,"hh5_%dumSi_g1",thick[it]);
-    hh5[it]=new TH1F(tit,tit,5000,0,50000);
-    hs->Add(hh5[it]);
-
-    sprintf(tit,"%dumSi_g1",thick[it]);
-    cout << tit << endl;
-    hs->Add(hh[it]);
-    for (int iff=0; iff<nf; iff++) {
-      // cout << tit << " " << iff << endl;
-      sprintf(fname,"/mnt/moench/Moench03_MS_20150606/direct_beam_12.4keV_filter_scan/direct_beam_12.4keV_%s_400clk_f0_%d.raw",tit,iff);
-      
-      filebin.open((const char *)(fname), ios::in | ios::binary);
-      if (filebin.is_open()) cout << "ok "<< fname << endl;
-      else  cout << "could not open "<< fname << endl;
-
-      while ((data=decoder->readNextFrame(filebin))) {
-	cout << "-" ;
-	//	for (int iy=0; iy<40; iy++)
-	//  for (int ix=0; ix<350; ix++){
-
-
-	    
-
-	val1=0;
-	val3=0;
-	val5=0;
-	
-
-	for (int iix=-2; iix<3; iix++) {
-	for (int iiy=-2; iiy<3; iiy++) {
-	  // cout << iix << " " << iiy << " " ;// <<endl;
-	  // p=hpix[]->ProjectionX("p",(iiy+2)*5+iix+2+1,(2+iiy)*5+iix+2+1);
-
-	  // ped[it]=p->GetBinCenter(p->GetMaximumBin());
-
-	  // cout << ped[it] <<endl;
-	  val=decoder->getChannel(data,ix+iix,iy+iiy)-ped[(iiy+2)*5+iix+2];
-	    if ((iix<-1 || iix>1) || (iiy<-1 || iiy>1))
-	      val5+=val;
-	    else if (iix!=0 || iiy!=0) {
-	      val5+=val;
-	      val3+=val;
-	    } else {
-	      val5+=val;
-	      val3+=val;
-	      val1+=val;
-	    }
-	    // if (iiy==1 && iix==0)
-	    //   h2[it]->Fill(val1,val);
-	      
-	}
-	}
-	      hh5[it]->Fill(val5);
-	      hh3[it]->Fill(val3);
-	      hh[it]->Fill(val1);
-
-      
-
-	delete [] data;
-      }
-      filebin.close();
-      cout << endl;
-
-    }
-
-
-    }
-  
-
-
-  return hs;
-
-}