mirror of
https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2025-04-21 19:30:03 +02:00
general funcs for pedestal subtraction, common mode, photon finding developed and implemented specifically for moench
git-svn-id: file:///afs/psi.ch/project/sls_det_software/svn/slsDetectorCalibration@12 113b152e-814d-439b-b186-022a431db7b5
This commit is contained in:
bergamaschi
parent
01f87cff96
commit
1ae2d78bf5
@ -7,11 +7,15 @@
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class MovingStat
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{
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public:
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MovingStat() : n(1000), m_n(0) {}
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MovingStat(int nn=1000) : n(nn), m_n(0) {}
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void Clear()
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{
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m_n = 0;
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m_n = 0;
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m_oldM=0;
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m_newM=0;
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m_oldM2=0;
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m_newM2=0;
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}
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void SetN(int i) {n=i;};
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53
slsDetectorCalibration/commonModeSubtraction.h
Normal file
53
slsDetectorCalibration/commonModeSubtraction.h
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@ -0,0 +1,53 @@
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#ifndef COMMONMODESUBTRACTION_H
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#define COMMONMODESUBTRACTION_H
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#include "MovingStat.h"
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class commonModeSubtraction {
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public:
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commonModeSubtraction(int nn=1000, int iroi=1) : cmStat(NULL), cmPed(NULL), nCm(NULL), nROI(iroi) {cmStat=new MovingStat[nROI]; for (int i=0; i<nROI; i++) cmStat[i].SetN(nn); cmPed=new double[nROI]; nCm=new double[nROI];};
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virtual ~commonModeSubtraction() {delete [] cmStat; delete [] cmPed; delete [] nCm;};
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virtual void Clear(){
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for (int i=0; i<nROI; i++) {
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cmStat[i].Clear();
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nCm[i]=0;
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cmPed[i]=0;
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}};
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virtual void newFrame(){
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for (int i=0; i<nROI; i++) {
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if (nCm[i]>0) cmStat[i].Calc(cmPed[i]/nCm[i]);
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nCm[i]=0;
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cmPed[i]=0;
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}};
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virtual void addToCommonMode(double val, int ix=0, int iy=0) {
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(void)ix; (void)iy;
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cmPed[0]+=val;
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nCm[0]++;};
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virtual double getCommonMode(int ix=0, int iy=0) {
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(void)ix; (void)iy;
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if (nCm[0]>0) return cmPed[0]/nCm[0]-cmStat[0].Mean();
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else return 0;};
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protected:
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MovingStat *cmStat; //stores the common mode average per supercolumn */
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double *cmPed; // stores the common mode for this frame per supercolumn */
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double *nCm; // stores the number of pedestals to calculate the cm per supercolumn */
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const int nROI;
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};
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#endif
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@ -33,38 +33,29 @@ class moench02ModuleData : public slsDetectorData<uint16_t> {
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*/
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moench02ModuleData(int nbg=1000): slsDetectorData<uint16_t>(160, 160, 40, 1286), nSigma(5), buff(NULL), oldbuff(NULL), pedSub(1) {
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int headerOff=0;
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int footerOff=1284;
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int dataOff=4;
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moench02ModuleData(double c=0): slsDetectorData<uint16_t>(160, 160, 40, 1286), xtalk(c) {
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int ix, iy, ir, ic, i, isc, ip;
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int **dMask;
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uint16_t **dMask;
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int **dMap;
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for (ir=0; ir<160; ir++) {
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for (ic=0; ic<160; ic++) {
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stat[ir][ic].Clear();
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stat[ir][ic].SetN(nbg);
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}
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}
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int ix, iy;
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dMask=new int*[160];
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for(i = 0; i < 160; i++) {
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dMask[i] = new int[160];
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}
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dMask=new uint16_t*[160];
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dMap=new int*[160];
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for(i = 0; i < 160; i++) {
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for (int i = 0; i < 160; i++) {
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dMap[i] = new int[160];
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dMask[i] = new uint16_t[160];
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}
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for (isc=0; isc<4; isc++) {
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for (ip=0; ip<10; ip++) {
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for (int isc=0; isc<4; isc++) {
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for (int ip=0; ip<10; ip++) {
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for (ir=0; ir<16; ir++) {
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for (ic=0; ic<40; ic++) {
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for (int ir=0; ir<16; ir++) {
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for (int ic=0; ic<40; ic++) {
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ix=isc*40+ic;
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iy=ip*16+ir;
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@ -88,9 +79,13 @@ class moench02ModuleData : public slsDetectorData<uint16_t> {
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setDataMap(dMap);
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setDataMask(dMask);
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};
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~moench02ModuleData() {if (buff) delete [] buff; if (oldbuff) delete [] oldbuff; };
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// ~moench02ModuleData() {if (buff) delete [] buff; if (oldbuff) delete [] oldbuff; };
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int getPacketNumber(char *buff){
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@ -100,176 +95,27 @@ class moench02ModuleData : public slsDetectorData<uint16_t> {
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return np;
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};
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void calculateCommonMode(int xmin=0, int xmax=160, int ymin=0, int ymax=160, double hc=0, double tc=0) {
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int scmin=xmin/40;
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int scmax=(xmax-1)/40+1;
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int isc=0, ix, iy;
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for (isc=scmin; isc<scmax; isc++) {
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nCm[isc]=0;
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cmPed[isc]=0;
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}
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for (ix=xmin-1; ix<xmax+1; ix++) {
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isc=ix/40;
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for (iy=ymin-1; iy<ymax+1; iy++) {
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if (isGood(ix,iy)) {
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if (getEventType(ix, iy, hc, tc, 1,0)==PEDESTAL) {
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cmPed[isc]+=getChannelShort(ix, iy, hc, tc);
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nCm[isc]++;
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}
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}
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}
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}
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for (isc=scmin; isc<scmax; isc++) {
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if (nCm[isc]>0)
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cmStat[isc].Calc(cmPed[isc]/nCm[isc]);
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// cout << "SC " << isc << nCm[isc] << " " << cmPed[isc]/nCm[isc] << " " << cmStat[isc].Mean() << endl;
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}
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};
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double getCommonMode(int ix, int iy) {
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int isc=ix/40;
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if (nCm[isc]>0) {
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/* if (ix==20 && iy==20) */
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/* cout << cmPed[isc] << " " << nCm[isc] << " " << cmStat[isc].Mean() << " " << cmPed[isc]/nCm[isc]-cmStat[isc].Mean() << endl; */
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return cmPed[isc]/nCm[isc]-cmStat[isc].Mean();
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} else {
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/* if (ix==20 && iy==20) */
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/* cout << "No common mode!" << endl; */
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return 0;
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}
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};
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void addToPedestal(double val, int ix, int iy){stat[iy][ix].Calc(val);};
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double getPedestal(int ix, int iy){return stat[iy][ix].Mean();};
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double getPedestalRMS(int ix, int iy){return stat[iy][ix].StandardDeviation();};
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double setNSigma(double n){if (n>0) nSigma=n; return nSigma;}
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char *getBuff(){return buff;}
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char *getOldBuff(){return oldbuff;}
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int setPedestalSubstraction(int i=-1){if (i>=0) pedSub=i; return pedSub;};
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double getChannelShort(int ix, int iy, double hc=0, double tc=0) {
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double val=slsDetectorData<uint16_t>::getChannel(buff,ix,iy);
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if (ix>0 && hc!=0)
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val-=hc*slsDetectorData<uint16_t>::getChannel(buff,ix-1,iy);
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if (oldbuff && tc!=0)
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val+=tc*slsDetectorData<uint16_t>::getChannel(oldbuff,ix,iy);
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return val;
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double getValue(char *data, int ix, int iy=0) {
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if (xtalk==0 || ix%40==0)
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return (double)getValue(data, ix, iy);
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else
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return slsDetectorData<uint16_t>::getValue(data, ix, iy)-xtalk*slsDetectorData<uint16_t>::getValue(data, ix-1, iy);
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};
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double setXTalk(double c) {xtalk=c; return xtalk;}
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double getXTalk() {return xtalk;}
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eventType getEventType(int ix, int iy, double hcorr=0, double tcorr=0, int sign=1, int cm=0) {
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/* PEDESTAL, */
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/* NEIGHBOUR, */
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/* PHOTON, */
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/* PHOTON_MAX, */
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/* NEGATIVE_PEDESTAL */
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eventType ret=PEDESTAL;
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double tot=0, v, max=0, sig;
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sig=getPedestalRMS(ix,iy);
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for (int ir=-1; ir<2; ir++) {
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for (int ic=-1; ic<2; ic ++) {
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if ((iy+ir)>=0 && (iy+ir)<160 && (ix+ic)>=0 && (ix+ic)<160) {
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v=sign*getChannelShort(ix+ic, iy+ir, hcorr, tcorr);
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if (pedSub)
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v-=sign*getPedestal(ix+ic,iy+ir);
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if (cm)
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v-=sign*getCommonMode(ix+ic, iy+ic);
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cluster[ic+1][ir+1]=v;
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tot+=v;
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if (v>max) {
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max=v;
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}
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if (ir==0 && ic==0) {
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if (v>nSigma*getPedestalRMS(ix,iy)) {
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ret=PHOTON;
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} else if (v<-nSigma*getPedestalRMS(ix,iy))
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ret=NEGATIVE_PEDESTAL;
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}
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}
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}
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}
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if (ret!=PHOTON && tot>3*nSigma*sig)
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ret=NEIGHBOUR;
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else if (ret==PHOTON) {
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if (cluster[1][1]>=max)
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ret=PHOTON_MAX;
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}
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cx=ix;
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cy=iy;
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return ret;
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};
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double getClusterElement(int ic, int ir, int cmsub=0){return cluster[ic+1][ir+1];};
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double *getCluster(){return &cluster[0][0];};
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TTree *initMoenchTree(char *tname, Int_t *iframe, Int_t * x, Int_t* y, Double_t data[3][3], Double_t *ped, Double_t *sigma) {
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TTree* tall=new TTree(tname,tname);
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tall->Branch("iFrame",iframe,"iframe/I");
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tall->Branch("x",x,"x/I");
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tall->Branch("y",y,"y/I");
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tall->Branch("data",data,"data[3][3]/D");
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tall->Branch("pedestal",ped,"pedestal/D");
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tall->Branch("rms",sigma,"rms/D");
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return tall;
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};
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private:
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MovingStat stat[160][160];
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double nSigma;
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double cluster[3][3];
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char *buff;
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char *oldbuff;
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int pedSub;
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int cmSub;
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double xtalk;
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MovingStat cmStat[4]; //stores the common mode average per supercolumn
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double cmPed[4]; // stores the common mode for this frame per supercolumn
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double nCm[4]; // stores the number of pedestals to calculate the cm per supercolumn
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int cx, cy;
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};
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34
slsDetectorCalibration/moenchCommonMode.h
Normal file
34
slsDetectorCalibration/moenchCommonMode.h
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@ -0,0 +1,34 @@
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#ifndef MOENCHCOMMONMODE_H
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#define MOENCHCOMMONMODE_H
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#include "commonModeSubtraction.h"
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class moenchCommonMode : public commonModeSubtraction {
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public:
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moenchCommonMode(int nn=1000) : commonModeSubtraction(nn,4){} ;
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virtual void addToCommonMode(double val, int ix=0, int iy=0) {
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(void)iy;
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int isc=ix/40;
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if (isc>=0 && isc<4) {
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cmPed[isc]+=val;
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nCm[isc]++;
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}
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};
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virtual double getCommonMode(int ix=0, int iy=0) {
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(void)iy;
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int isc=ix/40;
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if (isc>=0 && isc<4) {
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if (nCm[isc]>0) return cmPed[isc]/nCm[isc]-cmStat[isc].Mean();
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}
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return 0;};
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};
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#endif
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@ -15,6 +15,8 @@
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//#include <queue>
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#include <fstream>
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#include "moench02ModuleData.h"
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#include "moenchCommonMode.h"
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#include "singlePhotonDetector.h"
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//#include "MovingStat.h"
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@ -51,13 +53,19 @@ using namespace std;
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*/
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THStack *moenchReadData(char *fformat, char *tit, int runmin, int runmax, int nbins=1500, int hmin=-500, int hmax=1000, int sign=1, double hc=0, double tc=0, int xmin=0, int xmax=NC, int ymin=0, int ymax=NR, int pedsub=1, int cmsub=0) {
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THStack *moenchReadData(char *fformat, char *tit, int runmin, int runmax, int nbins=1500, int hmin=-500, int hmax=1000, int sign=1, double hc=0, int xmin=0, int xmax=NC, int ymin=0, int ymax=NR, int cmsub=0) {
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moench02ModuleData *decoder=new moench02ModuleData();
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moench02ModuleData *decoder=new moench02ModuleData(hc);
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moenchCommonMode *cmSub=NULL;
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if (cmsub)
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cmSub=new moenchCommonMode();
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singlePhotonDetector<uint16_t> *filter=new singlePhotonDetector<uint16_t>(decoder, 3, 5, sign, cmSub);
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char *buff;
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char *oldbuff=NULL;
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char fname[10000];
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double oldval;
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int nf=0;
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eventType thisEvent=PEDESTAL;
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@ -80,50 +88,39 @@ THStack *moenchReadData(char *fformat, char *tit, int runmin, int runmax, int nb
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TH2F *h1=new TH2F("h1",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
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hs->Add(h1);
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if (pedsub) {
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h2=new TH2F("h2",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
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h3=new TH2F("h3",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
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hetaX=new TH2F("hetaX",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5);
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hetaY=new TH2F("hetaY",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5);
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hs->Add(h2);
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hs->Add(h3);
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hs->Add(hetaX);
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hs->Add(hetaY);
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}
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h2=new TH2F("h2",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
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h3=new TH2F("h3",tit,nbins,hmin-0.5,hmax-0.5,NC*NR,-0.5,NC*NR-0.5);
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hetaX=new TH2F("hetaX",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5);
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hetaY=new TH2F("hetaY",tit,nbins,-1,2,NC*NR,-0.5,NC*NR-0.5);
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hs->Add(h2);
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hs->Add(h3);
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hs->Add(hetaX);
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hs->Add(hetaY);
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ifstream filebin;
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int ix=20, iy=20, ir, ic;
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Int_t iFrame, x, y;
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Double_t data[3][3],ped,sigma;
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Int_t iFrame;
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TTree *tall=filter->initEventTree(tit, &iFrame);
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TTree *tall;
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if (pedsub) {
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cout << "Subtracting pedestal!!!! " << endl;
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tall=decoder->initMoenchTree(tit, &iFrame, &x, &y, data, &ped, &sigma);
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}
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double tot, tl, tr, bl, br, v;
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int scmin=xmin/40, scmax=(xmax-1)/40+1;
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// 6% x-talk from previous pixel
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// 12% x-talk from previous frame
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#ifdef MY_DEBUG
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TCanvas *myC=new TCanvas();
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TH2F *he=new TH2F("he","Event",3,-1.5,1.5,3,-1.5,1.5);
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TH2F *he=new TH2F("he","Event Mask",xmax-xmin, xmin, xmax, ymax-ymin, ymin, ymax);
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he->SetStats(kFALSE);
|
||||
he->Draw("colz");
|
||||
he->SetMinimum(0);
|
||||
he->SetMaximum(0.5*hmax);
|
||||
#endif
|
||||
filter->newDataSet();
|
||||
|
||||
|
||||
for (int irun=runmin; irun<runmax; irun++) {
|
||||
sprintf(fname,fformat,irun);
|
||||
@ -133,77 +130,45 @@ THStack *moenchReadData(char *fformat, char *tit, int runmin, int runmax, int nb
|
||||
while ((buff=decoder->readNextFrame(filebin))) {
|
||||
|
||||
|
||||
filter->newFrame();
|
||||
|
||||
if (nf>100) {
|
||||
if (cmsub) {
|
||||
for (int isc=scmin; isc<scmax; isc++) {
|
||||
decoder->calculateCommonMode(3+isc*40, 40*(isc+1)-3, 3, NR-3, hc, tc);
|
||||
#ifdef MY_DEBUG
|
||||
if (nf%1000==0) cout << "sc=" << isc << " CM="<< decoder->getCommonMode(3+isc*40, NR/2)<< endl;
|
||||
#endif
|
||||
//calculate pedestals and common modes
|
||||
if (cmsub) {
|
||||
for (ix=xmin-1; ix<xmax+1; ix++)
|
||||
for (iy=ymin-1; iy<ymax+1; iy++) {
|
||||
thisEvent=filter->getEventType(buff, ix, iy,0);
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
for (ix=xmin-1; ix<xmax+1; ix++)
|
||||
for (iy=ymin-1; iy<ymax+1; iy++) {
|
||||
////////////////////////////////////////////////////////
|
||||
if (pedsub) {
|
||||
thisEvent=filter->getEventType(buff, ix, iy, cmsub);
|
||||
|
||||
|
||||
if (nf>100) {
|
||||
thisEvent= decoder->getEventType(ix, iy, hc, tc, 1,1);
|
||||
}
|
||||
|
||||
#ifdef MY_DEBUG
|
||||
if (iev%10000==0)
|
||||
he->SetBinContent(ix+1-xmin, iy+1-ymin, (int)thisEvent);
|
||||
#endif
|
||||
|
||||
|
||||
|
||||
if (thisEvent==PEDESTAL) {
|
||||
if (cmsub && nf>1000)
|
||||
decoder->addToPedestal(decoder->getChannelShort(ix, iy, hc, tc)-decoder->getCommonMode(ix,iy), ix, iy);
|
||||
else
|
||||
decoder->addToPedestal( decoder->getChannelShort(ix, iy, hc, tc), ix, iy);
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
/***********************************************************
|
||||
Add here the function that you want to call: fill histos, make trees etc.
|
||||
************************************************************/
|
||||
// getClusterElement to access quickly the photon and the neighbours
|
||||
if (nf>1000) {
|
||||
tot=0;
|
||||
tl=0;
|
||||
tr=0;
|
||||
bl=0;
|
||||
br=0;
|
||||
h1->Fill(decoder->getClusterElement(0,0), iy+NR*ix);
|
||||
h1->Fill(filter->getClusterElement(0,0), iy+NR*ix);
|
||||
|
||||
// if (nf%1000==0 && ix==20 && iy==20) cout << " val="<< decoder->getClusterElement(0,0)<< endl;
|
||||
|
||||
if (thisEvent==PHOTON_MAX ) {
|
||||
#ifdef MY_DEBUG
|
||||
if (iev%100000==0) {
|
||||
cout << "Event " << iev << " Frame "<< nf << endl;
|
||||
}
|
||||
#endif
|
||||
|
||||
|
||||
|
||||
for (ir=-1; ir<2; ir++) {
|
||||
for (ic=-1; ic<2; ic++) {
|
||||
v=decoder->getClusterElement(ic,ir,cmsub);
|
||||
data[ic+1][ir+1]=v;
|
||||
#ifdef MY_DEBUG
|
||||
if (iev%100000==0) {
|
||||
he->SetBinContent(ic+2,ir+2,v);
|
||||
cout << "Histo("<< ix+ic << ","<< iy+ir <<")" << v << endl;
|
||||
}
|
||||
#endif
|
||||
v=filter->getClusterElement(ic,ir);
|
||||
// data[ic+1][ir+1]=v;
|
||||
|
||||
|
||||
|
||||
tot+=v;
|
||||
@ -233,34 +198,34 @@ Add here the function that you want to call: fill histos, make trees etc.
|
||||
if (bl>br && bl>tl && bl>tr) {
|
||||
h2->Fill(bl, iy+NR*ix);
|
||||
if (bl>0) {
|
||||
hetaX->Fill((decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(0,-1,cmsub))/bl,iy+NR*ix);
|
||||
hetaY->Fill((decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(-1,0,cmsub))/bl,iy+NR*ix);
|
||||
hetaX->Fill(1.-(decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(0,-1,cmsub))/bl,iy+NR*(ix-1));
|
||||
hetaY->Fill(1.-(decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(-1,0,cmsub))/bl,(iy-1)+NR*ix);
|
||||
hetaX->Fill((filter->getClusterElement(0,0)+filter->getClusterElement(0,-1))/bl,iy+NR*ix);
|
||||
hetaY->Fill((filter->getClusterElement(0,0)+filter->getClusterElement(-1,0))/bl,iy+NR*ix);
|
||||
hetaX->Fill(1.-(filter->getClusterElement(0,0)+filter->getClusterElement(0,-1))/bl,iy+NR*(ix-1));
|
||||
hetaY->Fill(1.-(filter->getClusterElement(0,0)+filter->getClusterElement(-1,0))/bl,(iy-1)+NR*ix);
|
||||
}
|
||||
} else if (br>bl && br>tl && br>tr) {
|
||||
h2->Fill(br, iy+NR*ix);
|
||||
if (br>0) {
|
||||
hetaX->Fill((decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(0,-1,cmsub))/br,iy+NR*ix);
|
||||
hetaY->Fill((decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(1,0,cmsub))/br,iy+NR*ix);
|
||||
hetaX->Fill(1.-(decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(0,-1,cmsub))/br,iy+NR*(ix+1));
|
||||
hetaY->Fill(1.-(decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(1,0,cmsub))/br,iy-1+NR*ix);
|
||||
hetaX->Fill((filter->getClusterElement(0,0)+filter->getClusterElement(0,-1))/br,iy+NR*ix);
|
||||
hetaY->Fill((filter->getClusterElement(0,0)+filter->getClusterElement(1,0))/br,iy+NR*ix);
|
||||
hetaX->Fill(1.-(filter->getClusterElement(0,0)+filter->getClusterElement(0,-1))/br,iy+NR*(ix+1));
|
||||
hetaY->Fill(1.-(filter->getClusterElement(0,0)+filter->getClusterElement(1,0))/br,iy-1+NR*ix);
|
||||
}
|
||||
} else if (tl>br && tl>bl && tl>tr) {
|
||||
h2->Fill(tl, iy+NR*ix);
|
||||
if (tl>0) {
|
||||
hetaX->Fill((decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(0,1,cmsub))/tl,iy+NR*ix);
|
||||
hetaY->Fill((decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(-1,0,cmsub))/tl,iy+NR*ix);
|
||||
hetaX->Fill(1.-(decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(0,1,cmsub))/tl,iy+NR*(ix-1));
|
||||
hetaY->Fill(1.-(decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(-1,0,cmsub))/tl,iy+1+NR*ix);
|
||||
hetaX->Fill((filter->getClusterElement(0,0)+filter->getClusterElement(0,1))/tl,iy+NR*ix);
|
||||
hetaY->Fill((filter->getClusterElement(0,0)+filter->getClusterElement(-1,0))/tl,iy+NR*ix);
|
||||
hetaX->Fill(1.-(filter->getClusterElement(0,0)+filter->getClusterElement(0,1))/tl,iy+NR*(ix-1));
|
||||
hetaY->Fill(1.-(filter->getClusterElement(0,0)+filter->getClusterElement(-1,0))/tl,iy+1+NR*ix);
|
||||
}
|
||||
} else if (tr>bl && tr>tl && tr>br) {
|
||||
h2->Fill(tr, iy+NR*ix);
|
||||
if (tr>0) {
|
||||
hetaX->Fill((decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(0,1,cmsub))/tr,iy+NR*ix);
|
||||
hetaY->Fill((decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(1,0,cmsub))/tr,iy+NR*ix);
|
||||
hetaX->Fill(1.-(decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(0,1,cmsub))/tr,iy+NR*(ix+1));
|
||||
hetaY->Fill(1.-(decoder->getClusterElement(0,0,cmsub)+decoder->getClusterElement(1,0,cmsub))/tr,iy+1+NR*ix);
|
||||
hetaX->Fill((filter->getClusterElement(0,0)+filter->getClusterElement(0,1))/tr,iy+NR*ix);
|
||||
hetaY->Fill((filter->getClusterElement(0,0)+filter->getClusterElement(1,0))/tr,iy+NR*ix);
|
||||
hetaX->Fill(1.-(filter->getClusterElement(0,0)+filter->getClusterElement(0,1))/tr,iy+NR*(ix+1));
|
||||
hetaY->Fill(1.-(filter->getClusterElement(0,0)+filter->getClusterElement(1,0))/tr,iy+1+NR*ix);
|
||||
}
|
||||
|
||||
|
||||
@ -269,10 +234,6 @@ Add here the function that you want to call: fill histos, make trees etc.
|
||||
|
||||
h3->Fill(tot, iy+NR*ix);
|
||||
iFrame=decoder->getFrameNumber(buff);
|
||||
ped=decoder->getPedestal(ix,iy);
|
||||
sigma=decoder->getPedestalRMS(ix,iy);
|
||||
x=ix;
|
||||
y=iy;
|
||||
|
||||
tall->Fill();
|
||||
|
||||
@ -290,29 +251,25 @@ Add here the function that you want to call: fill histos, make trees etc.
|
||||
|
||||
|
||||
}
|
||||
} else {
|
||||
//cout << ix << " " << iy << endl;
|
||||
h1->Fill(decoder->getChannelShort(ix, iy), iy+NR*ix);
|
||||
}
|
||||
}
|
||||
//////////////////////////////////////////////////////////
|
||||
}
|
||||
|
||||
|
||||
cout << "=" ;
|
||||
nf++;
|
||||
}
|
||||
}
|
||||
cout << endl;
|
||||
if (filebin.is_open())
|
||||
filebin.close();
|
||||
else
|
||||
cout << "could not open file " << fname << endl;
|
||||
}
|
||||
if (pedsub)
|
||||
tall->Write(tall->GetName(),TObject::kOverwrite);
|
||||
|
||||
}
|
||||
tall->Write(tall->GetName(),TObject::kOverwrite);
|
||||
|
||||
|
||||
|
||||
delete decoder;
|
||||
cout << "Read " << nf << " frames" << endl;
|
||||
return hs;
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
24
slsDetectorCalibration/pedestalSubtraction.h
Normal file
24
slsDetectorCalibration/pedestalSubtraction.h
Normal file
@ -0,0 +1,24 @@
|
||||
#ifndef PEDESTALSUBTRACTION_H
|
||||
#define PEDESTALSUBTRACTION_H
|
||||
|
||||
#include "MovingStat.h"
|
||||
|
||||
class pedestalSubtraction {
|
||||
|
||||
public:
|
||||
pedestalSubtraction (int nn=1000) : stat(nn) {};
|
||||
virtual ~pedestalSubtraction() {};
|
||||
|
||||
virtual void Clear() {stat.Clear();}
|
||||
virtual void addToPedestal(double val){ stat.Calc(val);};
|
||||
virtual double getPedestal(){return stat.Mean();};
|
||||
virtual double getPedestalRMS(){return stat.StandardDeviation();};
|
||||
virtual int SetNPedestals(int i=-1) {if (i>0) stat.SetN(i); return stat.GetN();};
|
||||
|
||||
|
||||
|
||||
private:
|
||||
MovingStat stat;
|
||||
|
||||
};
|
||||
#endif
|
||||
@ -1,9 +1,22 @@
|
||||
#ifndef SINGLEPHOTONDETECTOR_H
|
||||
#define SINGLEPHOTONDETECTOR_H
|
||||
|
||||
|
||||
#include <inttypes.h>
|
||||
#include "slsDetectorData.h"
|
||||
|
||||
#include "MovingStat.h"
|
||||
#include "single_photon_hit.h"
|
||||
#include "pedestalSubtraction.h"
|
||||
#include "commonModeSubtraction.h"
|
||||
|
||||
|
||||
#define MYROOT1
|
||||
|
||||
#ifdef MYROOT1
|
||||
#include <TTree.h>
|
||||
|
||||
#endif
|
||||
|
||||
|
||||
#include <iostream>
|
||||
|
||||
@ -11,11 +24,12 @@ using namespace std;
|
||||
|
||||
|
||||
enum eventType {
|
||||
PEDESTAL,
|
||||
NEIGHBOUR,
|
||||
PHOTON,
|
||||
PHOTON_MAX,
|
||||
NEGATIVE_PEDESTAL,
|
||||
PEDESTAL=0,
|
||||
NEIGHBOUR=1,
|
||||
PHOTON=2,
|
||||
PHOTON_MAX=3,
|
||||
NEGATIVE_PEDESTAL=4,
|
||||
UNDEFINED=-1
|
||||
};
|
||||
|
||||
|
||||
@ -40,7 +54,13 @@ class singlePhotonDetector {
|
||||
*/
|
||||
|
||||
|
||||
singlePhotonDetector(slsDetectorData<dataType> *d, int csize=3, double nsigma=5) : det(d), clusterSize(csize), clusterSizeY(csize),nSigma(nsigma) {
|
||||
singlePhotonDetector(slsDetectorData<dataType> *d,
|
||||
int csize=3,
|
||||
double nsigma=5,
|
||||
int sign=1,
|
||||
commonModeSubtraction *cm=NULL,
|
||||
int nped=1000,
|
||||
int nd=100) : det(d), nx(0), ny(0), stat(NULL), cmSub(cm), nDark(nd), eventMask(NULL),nSigma (nsigma), clusterSize(csize), clusterSizeY(csize), cluster(NULL), iframe(-1), dataSign(sign) {
|
||||
|
||||
|
||||
|
||||
@ -48,9 +68,13 @@ class singlePhotonDetector {
|
||||
|
||||
|
||||
|
||||
stat=new MovingStat*[ny];
|
||||
for (int i=0; i<ny; i++)
|
||||
stat[i]=new MovingStat;
|
||||
stat=new pedestalSubtraction*[ny];
|
||||
eventMask=new eventType*[ny];
|
||||
for (int i=0; i<ny; i++) {
|
||||
stat[i]=new pedestalSubtraction[nx];
|
||||
stat[i]->SetNPedestals(nped);
|
||||
eventMask[i]=new eventType[nx];
|
||||
}
|
||||
|
||||
if (ny==1)
|
||||
clusterSizeY=1;
|
||||
@ -59,13 +83,24 @@ class singlePhotonDetector {
|
||||
|
||||
};
|
||||
|
||||
~singlePhotonDetector() {delete cluster; delete [] stat;};
|
||||
|
||||
virtual ~singlePhotonDetector() {delete cluster; for (int i=0; i<ny; i++) delete [] stat[i]; delete [] stat;};
|
||||
|
||||
|
||||
void addToPedestal(double val, int ix, int iy){ if (ix>=0 && ix<nx && iy>=0 && iy<ny) stat[iy][ix].Calc(val);};
|
||||
double getPedestal(int ix, int iy){if (ix>=0 && ix<nx && iy>=0 && iy<ny) return stat[iy][ix].Mean(); else return -1;};
|
||||
double getPedestalRMS(int ix, int iy){if (ix>=0 && ix<nx && iy>=0 && iy<ny) return stat[iy][ix].StandardDeviation();else return -1;};
|
||||
void newDataSet(){iframe=-1; for (int iy=0; iy<ny; iy++) for (int ix=0; ix<nx; ix++) stat[iy][ix].Clear(); if (cmSub) cmSub->Clear(); };
|
||||
void newFrame(){iframe++; for (int iy=0; iy<ny; iy++) for (int ix=0; ix<nx; ix++) eventMask[iy][ix]=UNDEFINED; if (cmSub) cmSub->newFrame();};
|
||||
|
||||
|
||||
commonModeSubtraction setCommonModeSubtraction(commonModeSubtraction *cm) {cmSub=cm; return cmSub;};
|
||||
|
||||
int setDataSign(int sign=0) {if (sign==1 || sign==-1) dataSign=sign; return dataSign;};
|
||||
|
||||
virtual void addToPedestal(double val, int ix, int iy){ if (ix>=0 && ix<nx && iy>=0 && iy<ny) { stat[iy][ix].addToPedestal(val); if (cmSub && det->isGood(ix, iy) ) cmSub->addToCommonMode(val, ix, iy);}};
|
||||
|
||||
|
||||
virtual double getPedestal(int ix, int iy, int cm=0){if (ix>=0 && ix<nx && iy>=0 && iy<ny) if (cmSub && cm>0) return stat[iy][ix].getPedestal()-cmSub->getCommonMode(); else return stat[iy][ix].getPedestal(); else return -1;};
|
||||
|
||||
|
||||
double getPedestalRMS(int ix, int iy){if (ix>=0 && ix<nx && iy>=0 && iy<ny) return stat[iy][ix].getPedestalRMS();else return -1;};
|
||||
|
||||
double setNSigma(double n=-1){if (n>0) nSigma=n; return nSigma;}
|
||||
|
||||
@ -85,49 +120,74 @@ class singlePhotonDetector {
|
||||
|
||||
|
||||
|
||||
eventType getEventType(char *data, int ix, int iy, double hcorr=0, double tcorr=0, int sign=1, int cm=0) {
|
||||
eventType getEventType(char *data, int ix, int iy, int cm=0) {
|
||||
|
||||
eventType ret=PEDESTAL;
|
||||
double tot=0, v, max=0, sig;
|
||||
// eventType ret=PEDESTAL;
|
||||
double tot=0, max=0;
|
||||
|
||||
if (iframe<nDark) {
|
||||
if (cm==0)
|
||||
addToPedestal(det->getValue(data, ix, iy),ix,iy);
|
||||
return UNDEFINED;
|
||||
}
|
||||
|
||||
|
||||
|
||||
sig=getPedestalRMS(ix,iy);
|
||||
if (eventMask[iy][ix]==UNDEFINED) {
|
||||
|
||||
eventMask[iy][ix]=PEDESTAL;
|
||||
|
||||
|
||||
cluster->x=ix;
|
||||
cluster->y=iy;
|
||||
cluster->rms=getPedestalRMS(ix,iy);
|
||||
cluster->ped=getPedestal(ix,iy, cm);
|
||||
|
||||
|
||||
cluster->x=ix;
|
||||
cluster->y=iy;
|
||||
cluster->rms=sig;
|
||||
cluster->ped=getPedestal(ix,iy);
|
||||
|
||||
|
||||
for (int ir=-(clusterSizeY/2); ir<(clusterSizeY/2)+1; ir++) {
|
||||
for (int ic=-(clusterSize/2); ic<(clusterSize/2)+1; ic++) {
|
||||
if ((iy+ir)>=0 && (iy+ir)<160 && (ix+ic)>=0 && (ix+ic)<160) {
|
||||
v=sign*(det->getValue(data, ix+ic, iy+ir)-getPedestal(ix+ic,iy+ir));
|
||||
// if (cm)
|
||||
// v-=sign*getCommonMode(ix+ic, iy+ic);
|
||||
cluster->set_data(ic, ir, v);
|
||||
tot+=v;
|
||||
if (v>max) {
|
||||
max=v;
|
||||
}
|
||||
if (ir==0 && ic==0) {
|
||||
if (v>nSigma*getPedestalRMS(ix,iy)) {
|
||||
ret=PHOTON;
|
||||
} else if (v<-nSigma*getPedestalRMS(ix,iy))
|
||||
ret=NEGATIVE_PEDESTAL;
|
||||
for (int ir=-(clusterSizeY/2); ir<(clusterSizeY/2)+1; ir++) {
|
||||
for (int ic=-(clusterSize/2); ic<(clusterSize/2)+1; ic++) {
|
||||
if ((iy+ir)>=0 && (iy+ir)<ny && (ix+ic)>=0 && (ix+ic)<nx) {
|
||||
cluster->set_data(dataSign*(det->getValue(data, ix+ic, iy+ir)-getPedestal(ix+ic,iy+ir,cm)), ic, ir );
|
||||
tot+=cluster->get_data(ic,ir);
|
||||
if (cluster->get_data(ic,ir)>max) {
|
||||
max=cluster->get_data(ic,ir);
|
||||
}
|
||||
if (ir==0 && ic==0) {
|
||||
if (cluster->get_data(ic,ir)>nSigma*cluster->rms) {
|
||||
eventMask[iy][ix]=PHOTON;
|
||||
} else if (cluster->get_data(ic,ir)<-nSigma*cluster->rms)
|
||||
eventMask[iy][ix]=NEGATIVE_PEDESTAL;
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (eventMask[iy][ix]!=PHOTON && tot>sqrt(clusterSizeY*clusterSize)*nSigma*cluster->rms) {
|
||||
eventMask[iy][ix]=NEIGHBOUR;
|
||||
|
||||
} else if (eventMask[iy][ix]==PHOTON) {
|
||||
if (cluster->get_data(0,0)>=max) {
|
||||
for (int ir=-(clusterSizeY/2); ir<(clusterSizeY/2)+1; ir++) {
|
||||
for (int ic=-(clusterSize/2); ic<(clusterSize/2)+1; ic++) {
|
||||
|
||||
if ((iy+ir)>=0 && (iy+ir)<ny && (ix+ic)>=0 && (ix+ic)<nx) {
|
||||
if (eventMask[iy+ir][ix+ic]==UNDEFINED)
|
||||
if (ir==0 && ic==0) eventMask[iy+ir][ix+ic]=PHOTON_MAX;
|
||||
else eventMask[iy+ir][ix+ic]=NEIGHBOUR;
|
||||
}
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
} else if (eventMask[iy][ix]==PEDESTAL) {
|
||||
if (cm==0)
|
||||
addToPedestal(det->getValue(data, ix, iy),ix,iy);
|
||||
}
|
||||
}
|
||||
|
||||
if (ret!=PHOTON && tot>3*nSigma*sig)
|
||||
ret=NEIGHBOUR;
|
||||
else if (ret==PHOTON) {
|
||||
if (cluster->get_data(0,0)>=max)
|
||||
ret=PHOTON_MAX;
|
||||
}
|
||||
|
||||
return ret;
|
||||
|
||||
return eventMask[iy][ix];
|
||||
|
||||
};
|
||||
|
||||
@ -135,10 +195,31 @@ class singlePhotonDetector {
|
||||
|
||||
|
||||
|
||||
int SetNPedestals(int i=-1) {int ix=0, iy=0; if (i>0) for (ix=0; ix<nx; ix++) for (iy=0; iy<ny; iy++) stat[iy][ix].SetNPedestals(i); return stat[0][0].SetNPedestals();};
|
||||
|
||||
double getClusterElement(int ic, int ir){return cluster->get_data(ic,ir);};
|
||||
eventType getEventMask(int ic, int ir){return eventMask[ir][ic];};
|
||||
|
||||
#ifdef MYROOT1
|
||||
TTree *initEventTree(char *tname, int *iFrame=NULL) {
|
||||
TTree* tall=new TTree(tname,tname);
|
||||
|
||||
if (iFrame)
|
||||
tall->Branch("iFrame",iFrame,"iframe/I");
|
||||
else
|
||||
tall->Branch("iFrame",&(cluster->iframe),"iframe/I");
|
||||
|
||||
tall->Branch("x",&(cluster->x),"x/I");
|
||||
tall->Branch("y",&(cluster->y),"y/I");
|
||||
char tit[100];
|
||||
sprintf(tit,"data[%d]/D",clusterSize*clusterSizeY);
|
||||
tall->Branch("data",cluster->data,tit);
|
||||
tall->Branch("pedestal",&(cluster->ped),"pedestal/D");
|
||||
tall->Branch("rms",&(cluster->rms),"rms/D");
|
||||
return tall;
|
||||
};
|
||||
#endif
|
||||
|
||||
double getClusterElement(int ic, int ir, int cmsub=0){return cluster->get_data(ic,ir);};
|
||||
|
||||
|
||||
private:
|
||||
|
||||
@ -146,80 +227,22 @@ class singlePhotonDetector {
|
||||
int nx, ny;
|
||||
|
||||
|
||||
|
||||
MovingStat **stat;
|
||||
pedestalSubtraction **stat;
|
||||
commonModeSubtraction *cmSub;
|
||||
//MovingStat **stat;
|
||||
int nDark;
|
||||
eventType **eventMask;
|
||||
double nSigma;
|
||||
int clusterSize, clusterSizeY;
|
||||
single_photon_hit *cluster;
|
||||
int iframe;
|
||||
int dataSign;
|
||||
|
||||
MovingStat cmStat[4]; //stores the common mode average per supercolumn
|
||||
double cmPed[4]; // stores the common mode for this frame per supercolumn
|
||||
double nCm[4]; // stores the number of pedestals to calculate the cm per supercolumn
|
||||
int cx, cy;
|
||||
/* int cx, cy; */
|
||||
};
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
/////////////////////////////////////////////////////// DONE UNTIL HERE!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
|
||||
/* void calculateCommonMode(int xmin=0, int xmax=160, int ymin=0, int ymax=160, double hc=0, double tc=0) { */
|
||||
|
||||
/* int scmin=xmin/40; */
|
||||
/* int scmax=(xmax-1)/40+1; */
|
||||
/* int isc=0, ix, iy; */
|
||||
|
||||
/* for (isc=scmin; isc<scmax; isc++) { */
|
||||
/* nCm[isc]=0; */
|
||||
/* cmPed[isc]=0; */
|
||||
/* } */
|
||||
|
||||
|
||||
|
||||
|
||||
/* for (ix=xmin-1; ix<xmax+1; ix++) { */
|
||||
/* isc=ix/40; */
|
||||
/* for (iy=ymin-1; iy<ymax+1; iy++) { */
|
||||
/* if (isGood(ix,iy)) { */
|
||||
/* if (getEventType(ix, iy, hc, tc, 1,0)==PEDESTAL) { */
|
||||
/* cmPed[isc]+=getChannelShort(ix, iy, hc, tc); */
|
||||
/* nCm[isc]++; */
|
||||
/* } */
|
||||
/* } */
|
||||
|
||||
/* } */
|
||||
|
||||
/* } */
|
||||
|
||||
|
||||
/* for (isc=scmin; isc<scmax; isc++) { */
|
||||
|
||||
/* if (nCm[isc]>0) */
|
||||
/* cmStat[isc].Calc(cmPed[isc]/nCm[isc]); */
|
||||
|
||||
/* // cout << "SC " << isc << nCm[isc] << " " << cmPed[isc]/nCm[isc] << " " << cmStat[isc].Mean() << endl; */
|
||||
|
||||
/* } */
|
||||
|
||||
|
||||
/* }; */
|
||||
|
||||
/* double getCommonMode(int ix, int iy) { */
|
||||
/* int isc=ix/40; */
|
||||
/* if (nCm[isc]>0) { */
|
||||
/* /\* if (ix==20 && iy==20) *\/ */
|
||||
/* /\* cout << cmPed[isc] << " " << nCm[isc] << " " << cmStat[isc].Mean() << " " << cmPed[isc]/nCm[isc]-cmStat[isc].Mean() << endl; *\/ */
|
||||
/* return cmPed[isc]/nCm[isc]-cmStat[isc].Mean(); */
|
||||
/* } else { */
|
||||
/* /\* if (ix==20 && iy==20) *\/ */
|
||||
/* /\* cout << "No common mode!" << endl; *\/ */
|
||||
|
||||
/* return 0; */
|
||||
/* } */
|
||||
/* }; */
|
||||
|
||||
|
||||
|
||||
#endif
|
||||
|
||||
@ -24,13 +24,13 @@ class slsDetectorData {
|
||||
|
||||
|
||||
*/
|
||||
slsDetectorData(int npx, int npy, int np, int psize, int **dMap=NULL, int **dMask=NULL, int **dROI=NULL): nx(npx), ny(npy), nPackets(np), packetSize(psize) {
|
||||
slsDetectorData(int npx, int npy, int np, int psize, int **dMap=NULL, dataType **dMask=NULL, int **dROI=NULL): nx(npx), ny(npy), nPackets(np), packetSize(psize) {
|
||||
|
||||
|
||||
|
||||
dataMask=new int*[ny];
|
||||
dataMask=new dataType*[ny];
|
||||
for(int i = 0; i < ny; i++) {
|
||||
dataMask[i] = new int[nx];
|
||||
dataMask[i] = new dataType[nx];
|
||||
}
|
||||
dataMap=new int*[ny];
|
||||
for(int i = 0; i < ny; i++) {
|
||||
@ -74,7 +74,7 @@ class slsDetectorData {
|
||||
|
||||
};
|
||||
|
||||
void setDataMask(int **dMask=NULL){
|
||||
void setDataMask(dataType **dMask=NULL){
|
||||
|
||||
if (dMask!=NULL) {
|
||||
|
||||
@ -102,9 +102,9 @@ class slsDetectorData {
|
||||
|
||||
};
|
||||
|
||||
int setGood(int ix, int iy, int i=1) {dataROIMask[iy][ix]=i; return isGood(ix,iy);};
|
||||
int setGood(int ix, int iy, int i=1) { if (ix>=0 && ix<nx && iy>=0 && iy<ny) dataROIMask[iy][ix]=i; return isGood(ix,iy);};
|
||||
|
||||
int isGood(int ix, int iy) {return dataROIMask[iy][ix];};
|
||||
int isGood(int ix, int iy) { if (ix>=0 && ix<nx && iy>=0 && iy<ny) return dataROIMask[iy][ix]; else return -1;};
|
||||
|
||||
|
||||
void getDetectorSize(int &npx, int &npy){npx=nx; npy=ny;};
|
||||
@ -123,7 +123,11 @@ class slsDetectorData {
|
||||
|
||||
|
||||
virtual dataType getChannel(char *data, int ix, int iy=0) {
|
||||
dataType m=dataMask[iy][ix], d=*((dataType*)(data+dataMap[iy][ix]));
|
||||
dataType m=0, d=0;
|
||||
if (ix>=0 && ix<nx && iy>=0 && iy<ny && dataMap[iy][ix]>=0 && dataMap[iy][ix]<nPackets*packetSize) {
|
||||
m=dataMask[iy][ix];
|
||||
d=*((dataType*)(data+dataMap[iy][ix]));
|
||||
}
|
||||
return d^m;
|
||||
};
|
||||
|
||||
@ -234,7 +238,7 @@ class slsDetectorData {
|
||||
const int nPackets; /**<number of UDP packets constituting one frame */
|
||||
const int packetSize; /**< size of a udp packet */
|
||||
int **dataMap; /**< Array of size nx*ny storing the pointers to the data in the dataset (as offset)*/
|
||||
int **dataMask; /**< Array of size nx*ny storing the polarity of the data in the dataset (should be 0 if no inversion is required, 0xffffffff is inversion is required) */
|
||||
dataType **dataMask; /**< Array of size nx*ny storing the polarity of the data in the dataset (should be 0 if no inversion is required, 0xffffffff is inversion is required) */
|
||||
int **dataROIMask; /**< Array of size nx*ny 1 if channel is good (or in the ROI), 0 if bad channel (or out of ROI) */
|
||||
|
||||
};
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user