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New filename structure (#38)

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* WIP

* WIP

* linking names

* define for hdf5

* minor

* addressed comments
This commit is contained in:
Erik Fröjdh
2019-07-22 16:52:21 +03:00
committed by Dhanya Thattil
parent 6b7d9445aa
commit 1a9755ad0b
15 changed files with 276 additions and 161 deletions
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55
slsReceiverSoftware/include/HDF5FileStatic.h
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@@ -40,26 +40,24 @@ public:
* @param fpath file path
* @param fnameprefix file name prefix (includes scan and position variables)
* @param findex file index
* @param frindexenable frame index enable
* @param fnum frame number index
* @param subfindex sub file index
* @param dindex readout index
* @param numunits number of units per readout. eg. eiger has 2 udp units per readout
* @param unitindex unit index
* @returns complete file name created
*/
static std::string CreateFileName(char* fpath, char* fnameprefix, uint64_t findex, bool frindexenable,
uint64_t fnum = 0, int dindex = -1, int numunits = 1, int unitindex = 0)
{
std::ostringstream osfn;
osfn << fpath << "/" << fnameprefix;
if (dindex >= 0) osfn << "_d" << (dindex * numunits + unitindex);
if (frindexenable) osfn << "_f" << std::setfill('0') << std::setw(12) << fnum;
osfn << "_" << findex;
osfn << ".h5";
return osfn.str();
static std::string CreateFileName(char *fpath, char *fprefix,
uint64_t findex, uint64_t subfindex,
int dindex, int numunits = 1,
int unitindex = 0) {
std::ostringstream os;
os << fpath << "/" << fprefix << "_d"
<< (dindex * numunits + unitindex) << "_f" << subfindex << '_'
<< findex << ".h5";
return os.str();
}
/**
/**
* Create master file name
* @param fpath file path
* @param fnameprefix file name prefix (includes scan and position variables)
@@ -68,12 +66,10 @@ public:
*/
static std::string CreateMasterFileName(char* fpath, char* fnameprefix, uint64_t findex)
{
std::ostringstream osfn;
osfn << fpath << "/" << fnameprefix;
osfn << "_master";
osfn << "_" << findex;
osfn << ".h5";
return osfn.str();
std::ostringstream os;
os << fpath << "/" << fnameprefix << "_master"
<< "_" << findex << ".h5";
return os.str();
}
/**
@@ -111,7 +107,7 @@ public:
delete fd;
fd = 0;
}
} catch(Exception error) {
} catch(const Exception& error) {
FILE_LOG(logERROR) << "Could not close HDF5 handles of index " << ind;
error.printErrorStack();
}
@@ -129,7 +125,7 @@ public:
delete fd;
fd = 0;
}
} catch(Exception error) {
} catch(const Exception& error) {
FILE_LOG(logERROR) << "Could not close master HDF5 handles";
error.printErrorStack();
}
@@ -177,7 +173,7 @@ public:
dset->write(buf, dtype, memspace, *dspace);
memspace.close();
}
catch(Exception error){
catch(const Exception& error){
FILE_LOG(logERROR) << "Could not write to file in object " << ind;
error.printErrorStack();
return 1;
@@ -239,7 +235,7 @@ public:
dset_para[13]->write((char*)storage, parameterDataTypes[13], memspace, *dspace_para);
}i=14;
}
catch(Exception error){
catch(const Exception& error){
FILE_LOG(logERROR) << "Could not write parameters (index:" << i << ") to file in object " << ind;
error.printErrorStack();
return 1;
@@ -282,7 +278,7 @@ public:
dspace_para = new DataSpace(dset_para[0]->getSpace());
}
catch(Exception error){
catch(const Exception& error){
FILE_LOG(logERROR) << "Could not extend dataset in object " << ind;
error.printErrorStack();
return 1;
@@ -417,7 +413,7 @@ public:
fd->close();
} catch(Exception error) {
} catch(const Exception& error) {
FILE_LOG(logERROR) << "Could not create master HDF5 handles";
error.printErrorStack();
if (fd) fd->close();
@@ -521,7 +517,7 @@ public:
dset_para.push_back(ds);
}
}
catch(Exception error){
catch(const Exception& error){
FILE_LOG(logERROR) << "Could not create HDF5 handles in object " << ind;
error.printErrorStack();
if (fd) fd->close();
@@ -675,8 +671,9 @@ public:
//source file name
std::string srcFileName = HDF5FileStatic::CreateFileName(fpath, fnameprefix, findex,
frindexenable, framesSaved, dindex, numunits, i);
j, dindex, numunits, i);
FILE_LOG(logERROR) << srcFileName;
// find relative path
std::string relative_srcFileName = srcFileName;
{
@@ -688,7 +685,7 @@ public:
//source dataset name
std::ostringstream osfn;
osfn << "/data";
if (frindexenable) osfn << "_f" << std::setfill('0') << std::setw(12) << framesSaved;
if (frindexenable) osfn << "_f" << std::setfill('0') << std::setw(12) << j;
std::string srcDatasetName = osfn.str();
//source dataspace
@@ -861,7 +858,7 @@ public:
newDataset->write(data_out,datatype);
newfd->close();
oldfd->close();
} catch(Exception error){
} catch(const Exception& error){
FILE_LOG(logERROR) << "Could not copy virtual files";
error.printErrorStack();
free(data_out);