mirror of
https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2025-06-20 08:38:00 +02:00
hdf5 dependant master attributes
This commit is contained in:
@ -153,7 +153,7 @@ void HDF5File::WriteToFile(char *buffer, int bufferSize,
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}
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void HDF5File::CreateMasterFile(bool masterFileWriteEnable,
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MasterAttributes &attr) {
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MasterAttributes *attr) {
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// beginning of every acquisition
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numFramesInFile = 0;
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@ -459,7 +459,7 @@ void HDF5File::CreateDataFile() {
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}
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}
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void HDF5File::CreateMasterDataFile(MasterAttributes &attr) {
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void HDF5File::CreateMasterDataFile(MasterAttributes *attr) {
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std::ostringstream os;
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os << *filePath << "/" << *fileNamePrefix << "_master"
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@ -469,7 +469,6 @@ void HDF5File::CreateMasterDataFile(MasterAttributes &attr) {
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if (!(*silentMode)) {
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LOG(logINFO) << "Master File: " << masterFileName;
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}
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masterFileAttributes.version = HDF5_WRITER_VERSION;
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std::lock_guard<std::mutex> lock(HDF5File::hdf5Lib);
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@ -486,15 +485,6 @@ void HDF5File::CreateMasterDataFile(MasterAttributes &attr) {
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masterfd = new H5File(masterFileName.c_str(), H5F_ACC_TRUNC,
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FileCreatPropList::DEFAULT, flist);
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// create attributes
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// version
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{
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double dValue = masterFileAttributes.version;
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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Attribute attribute = masterfd->createAttribute(
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"version", PredType::NATIVE_DOUBLE, dataspace);
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attribute.write(PredType::NATIVE_DOUBLE, &dValue);
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}
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// Create a group in the file
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Group group1(masterfd->createGroup("entry"));
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Group group2(group1.createGroup("data"));
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@ -503,309 +493,7 @@ void HDF5File::CreateMasterDataFile(MasterAttributes &attr) {
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Group group5(group3.createGroup("detector"));
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Group group6(group1.createGroup("sample"));
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// Dynamic Range
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"dynamic range", PredType::NATIVE_INT, dataspace);
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dataset.write(&(masterFileAttributes.dynamicRange),
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PredType::NATIVE_INT);
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DataSpace dataspaceAttr = DataSpace(H5S_SCALAR);
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StrType strdatatype(PredType::C_S1, 256);
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Attribute attribute =
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dataset.createAttribute("unit", strdatatype, dataspaceAttr);
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attribute.write(strdatatype, std::string("bits"));
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}
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// Ten Giga
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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int iValue = masterFileAttributes.tenGiga;
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DataSet dataset = group5.createDataSet(
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"ten giga enable", PredType::NATIVE_INT, dataspace);
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dataset.write(&iValue, PredType::NATIVE_INT);
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}
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// Image Size
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"image size", PredType::NATIVE_INT, dataspace);
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dataset.write(&(masterFileAttributes.imageSize),
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PredType::NATIVE_INT);
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DataSpace dataspaceAttr = DataSpace(H5S_SCALAR);
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StrType strdatatype(PredType::C_S1, 256);
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Attribute attribute =
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dataset.createAttribute("unit", strdatatype, dataspaceAttr);
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attribute.write(strdatatype, std::string("bytes"));
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}
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// x
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"number of pixels in x axis", PredType::NATIVE_INT, dataspace);
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dataset.write(&(masterFileAttributes.nPixelsX),
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PredType::NATIVE_INT);
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}
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// y
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"number of pixels in y axis", PredType::NATIVE_INT, dataspace);
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dataset.write(&(masterFileAttributes.nPixelsY),
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PredType::NATIVE_INT);
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}
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// Maximum frames per file
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"maximum frames per file", PredType::NATIVE_INT, dataspace);
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dataset.write(&(masterFileAttributes.maxFramesPerFile),
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PredType::NATIVE_INT);
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}
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// Total Frames
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"total frames", PredType::STD_U64LE, dataspace);
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dataset.write(&(masterFileAttributes.totalFrames),
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PredType::STD_U64LE);
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}
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// Exptime
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"exposure time", PredType::STD_U64LE, dataspace);
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dataset.write(&(masterFileAttributes.exptimeNs),
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PredType::STD_U64LE);
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DataSpace dataspaceAttr = DataSpace(H5S_SCALAR);
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StrType strdatatype(PredType::C_S1, 256);
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Attribute attribute =
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dataset.createAttribute("unit", strdatatype, dataspaceAttr);
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attribute.write(strdatatype, std::string("ns"));
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}
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// SubExptime
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"sub exposure time", PredType::STD_U64LE, dataspace);
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dataset.write(&(masterFileAttributes.subExptimeNs),
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PredType::STD_U64LE);
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DataSpace dataspaceAttr = DataSpace(H5S_SCALAR);
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StrType strdatatype(PredType::C_S1, 256);
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Attribute attribute =
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dataset.createAttribute("unit", strdatatype, dataspaceAttr);
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attribute.write(strdatatype, std::string("ns"));
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}
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// SubPeriod
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"sub period", PredType::STD_U64LE, dataspace);
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dataset.write(&(masterFileAttributes.subPeriodNs),
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PredType::STD_U64LE);
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DataSpace dataspaceAttr = DataSpace(H5S_SCALAR);
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StrType strdatatype(PredType::C_S1, 256);
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Attribute attribute =
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dataset.createAttribute("unit", strdatatype, dataspaceAttr);
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attribute.write(strdatatype, std::string("ns"));
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}
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// Period
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"acquisition period", PredType::STD_U64LE, dataspace);
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dataset.write(&(masterFileAttributes.periodNs),
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PredType::STD_U64LE);
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DataSpace dataspaceAttr = DataSpace(H5S_SCALAR);
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StrType strdatatype(PredType::C_S1, 256);
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Attribute attribute =
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dataset.createAttribute("unit", strdatatype, dataspaceAttr);
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attribute.write(strdatatype, std::string("ns"));
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}
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// Quad Enable
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"quad enable", PredType::NATIVE_INT, dataspace);
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dataset.write(&(masterFileAttributes.quadEnable),
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PredType::NATIVE_INT);
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}
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// Analog Flag
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"analog flag", PredType::NATIVE_INT, dataspace);
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dataset.write(&(masterFileAttributes.analogFlag),
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PredType::NATIVE_INT);
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}
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// Digital Flag
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"digital flag", PredType::NATIVE_INT, dataspace);
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dataset.write(&(masterFileAttributes.digitalFlag),
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PredType::NATIVE_INT);
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}
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// ADC Mask
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"adc mask", PredType::NATIVE_INT, dataspace);
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dataset.write(&(masterFileAttributes.adcmask),
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PredType::NATIVE_INT);
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}
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// Dbit Offset
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"dbit offset", PredType::NATIVE_INT, dataspace);
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dataset.write(&(masterFileAttributes.dbitoffset),
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PredType::NATIVE_INT);
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}
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// Dbit List
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"dbit bitset list", PredType::STD_U64LE, dataspace);
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dataset.write(&(masterFileAttributes.dbitlist),
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PredType::STD_U64LE);
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}
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// Roi xmin
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"roi xmin", PredType::NATIVE_INT, dataspace);
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dataset.write(&(masterFileAttributes.roiXmin),
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PredType::NATIVE_INT);
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}
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// Roi xmax
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"roi xmax", PredType::NATIVE_INT, dataspace);
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dataset.write(&(masterFileAttributes.roiXmax),
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PredType::NATIVE_INT);
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}
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// Exptime1
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"exposure time1", PredType::STD_U64LE, dataspace);
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dataset.write(&(masterFileAttributes.exptime1Ns),
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PredType::STD_U64LE);
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DataSpace dataspaceAttr = DataSpace(H5S_SCALAR);
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StrType strdatatype(PredType::C_S1, 256);
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Attribute attribute =
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dataset.createAttribute("unit", strdatatype, dataspaceAttr);
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attribute.write(strdatatype, std::string("ns"));
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}
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// Exptime2
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"exposure time2", PredType::STD_U64LE, dataspace);
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dataset.write(&(masterFileAttributes.exptime2Ns),
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PredType::STD_U64LE);
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DataSpace dataspaceAttr = DataSpace(H5S_SCALAR);
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StrType strdatatype(PredType::C_S1, 256);
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Attribute attribute =
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dataset.createAttribute("unit", strdatatype, dataspaceAttr);
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attribute.write(strdatatype, std::string("ns"));
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}
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// Exptime3
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"exposure time3", PredType::STD_U64LE, dataspace);
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dataset.write(&(masterFileAttributes.exptime3Ns),
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PredType::STD_U64LE);
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DataSpace dataspaceAttr = DataSpace(H5S_SCALAR);
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StrType strdatatype(PredType::C_S1, 256);
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Attribute attribute =
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dataset.createAttribute("unit", strdatatype, dataspaceAttr);
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attribute.write(strdatatype, std::string("ns"));
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}
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// GateDelay1
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"gate delay1", PredType::STD_U64LE, dataspace);
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dataset.write(&(masterFileAttributes.gateDelay1Ns),
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PredType::STD_U64LE);
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DataSpace dataspaceAttr = DataSpace(H5S_SCALAR);
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StrType strdatatype(PredType::C_S1, 256);
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Attribute attribute =
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dataset.createAttribute("unit", strdatatype, dataspaceAttr);
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attribute.write(strdatatype, std::string("ns"));
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}
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// GateDelay2
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"gate delay2", PredType::STD_U64LE, dataspace);
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dataset.write(&(masterFileAttributes.gateDelay2Ns),
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PredType::STD_U64LE);
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DataSpace dataspaceAttr = DataSpace(H5S_SCALAR);
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StrType strdatatype(PredType::C_S1, 256);
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Attribute attribute =
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dataset.createAttribute("unit", strdatatype, dataspaceAttr);
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attribute.write(strdatatype, std::string("ns"));
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}
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// GateDelay3
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset = group5.createDataSet(
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"gate delay3", PredType::STD_U64LE, dataspace);
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dataset.write(&(masterFileAttributes.gateDelay3Ns),
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PredType::STD_U64LE);
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DataSpace dataspaceAttr = DataSpace(H5S_SCALAR);
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StrType strdatatype(PredType::C_S1, 256);
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Attribute attribute =
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dataset.createAttribute("unit", strdatatype, dataspaceAttr);
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attribute.write(strdatatype, std::string("ns"));
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}
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// Dbit Offset
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{
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset =
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group5.createDataSet("gates", PredType::NATIVE_INT, dataspace);
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dataset.write(&(masterFileAttributes.gates), PredType::NATIVE_INT);
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}
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// Timestamp
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{
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time_t t = time(nullptr);
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StrType strdatatype(PredType::C_S1, 256);
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DataSpace dataspace = DataSpace(H5S_SCALAR);
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DataSet dataset =
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group5.createDataSet("timestamp", strdatatype, dataspace);
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dataset.write(std::string(ctime(&t)), strdatatype);
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}
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attr->WriteMasterHDF5Attributes(masterfd, &group5);
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masterfd->close();
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} catch (const Exception &error) {
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@ -893,7 +581,7 @@ void HDF5File::CreateVirtualDataFile(uint32_t maxFramesPerFile, uint64_t numf) {
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if (H5Pset_fill_value(dcpl, GetDataTypeinC(datatype), &fill_value) < 0)
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throw sls::RuntimeError(
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"Could not create fill value in virtual file " + vname);
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hid_t dcpl_para[parameterNames.size()];
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std::vector<hid_t> dcpl_para(parameterNames.size());
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for (unsigned int i = 0; i < parameterNames.size(); ++i) {
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dcpl_para[i] = H5Pcreate(H5P_DATASET_CREATE);
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if (dcpl_para[i] < 0)
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