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manual-main fixed, detaildoc not, but for developers and in next release

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Dhanya Maliakal
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@ -7,8 +7,8 @@ original version by: Nikos Drakos, CBLU, University of Leeds
Jens Lippmann, Marek Rouchal, Martin Wilck and others -->
<HTML>
<HEAD>
<TITLE>How does the flat field correction work?</TITLE>
<META NAME="description" CONTENT="How does the flat field correction work?">
<TITLE>Single photon counting detectors</TITLE>
<META NAME="description" CONTENT="Single photon counting detectors">
<META NAME="keywords" CONTENT="slsDetectors-FAQ">
<META NAME="resource-type" CONTENT="document">
<META NAME="distribution" CONTENT="global">
@ -18,160 +18,98 @@ original version by: Nikos Drakos, CBLU, University of Leeds
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<B> Next:</B> <A NAME="tex2html325"
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HREF="node16.html">How do I chose</A>
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HREF="node18.html">Which detector settings should</A>
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HREF="slsDetectors-FAQ.html">SLS Detectors Frequently Asked</A>
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<BR>
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<H1><A NAME="SECTION00400000000000000000">
Single photon counting detectors</A>
</H1>
<P>
<BR><HR>
<!--Table of Child-Links-->
<A NAME="CHILD_LINKS"><STRONG>Subsections</STRONG></A>
<UL>
<LI><A NAME="tex2html326"
HREF="node17.html#SECTION00331000000000000000">Why isn't my flat-field flat?</A>
<LI><A NAME="tex2html327"
HREF="node17.html#SECTION00332000000000000000">Dynamic acquisition of the flat field</A>
</UL>
<!--End of Table of Child-Links-->
<HR>
<H1><A NAME="SECTION00330000000000000000">
How does the flat field correction work?</A>
</H1>
<P>
<H2><A NAME="SECTION00331000000000000000">
Why isn't my flat-field flat?</A>
</H2>
<P>
The main reasons of a non flat flat-field can be:
<LI><A NAME="tex2html371"
HREF="node18.html">Which detector settings should I choose?</A>
<UL>
<LI>The scattering from the glass rod is not uniform over the angular range. In this case you should take the flat field dynamically i.e. scanning the detector in front of the cylinder with the small window, as we do at the SLS. In this case when you shift the detector, the shape of the illumination remains in the same angular position (and shifts in channel number). Of course it depends a lot on the energy and on the geometry of the flat field acquisition.
<DIV ALIGN="CENTER"><A NAME="fig:badff"></A><A NAME="1114"></A>
<TABLE>
<CAPTION ALIGN="BOTTOM"><STRONG>Figure 2.5:</STRONG>
Example of a very bad flat field data set with highlights of some of the reasons which can cause the non-flat behavior for the MYTHEN detector. Similar effects can be visible also in 2D.</CAPTION>
<TR><TD>
<DIV ALIGN="CENTER">
<IMG
WIDTH="554" HEIGHT="538" ALIGN="BOTTOM" BORDER="0"
SRC="img26.png"
ALT="\includegraphics[width=\textwidth]{images/bad_ff_col}">
</DIV></TD></TR>
</TABLE>
</DIV>
<P>
</LI>
<LI>The entrance window for the X-rays is deformed (we also have this problem at the SLS). In this case when you move the detector the "mountain" moves with it in angle (And remains still in channel number). However this should correct without problems with the flat field correction, even in case of fluorescent emission. Should appear at all energies.
</LI>
<LI>Differences of efficiency between the modules i.e. mainly bad energy calibration. You normally see really steps at the transition between modules. Sometimes you have some groups of strips withing a module that are not properly trimmed and look as smallish peaks or valleys in the flat field. When you move the detector, these steps or peaks move in angle and remain still in channel number.
These differences can slightly change as a function of the energy (probably more evident at lower energies) but should normally always be there for the same settings.
These differences get much worse in presence of fluorescent emission, but normally correct properly with flat field correction.
</LI>
<LI><A NAME="tex2html372"
HREF="node18.html#SECTION00411000000000000000">MYTHEN</A>
</UL>
<P>
<H2><A NAME="SECTION00332000000000000000">
Dynamic acquisition of the flat field</A>
</H2>
<P>
In case it is not possible to uniformely illuminate the detector due to its large dimensions, one of the solutions is to scan it in front of an illuminated are with a uniform speed such that the integrated number of counts during the exposure time is the same for all channels.
<BR>
<P>
To do that, at the SLS we have optimized the dynamic acquisition of the flat fiel with the MYTHEN detector using a setup similar to the one sketched in figure&nbsp;<A HREF="#fig:ffsetup">2.6</A>.
It is important that the scanning range of the detector is chose such that the detector is not illuminated both at the beginning and at the end of the acquisition. Moreover the movement of the detector should be as uniform as possible. To avoid this kind of systematic errors we normally sum two flat field images taken in the two opposite directions of translation.
<LI><A NAME="tex2html373"
HREF="node19.html">How do I chose the comparator threshold?</A>
<LI><A NAME="tex2html374"
HREF="node20.html">How does the flat field correction work?</A>
<UL>
<LI><A NAME="tex2html375"
HREF="node20.html#SECTION00431000000000000000">Why isn't my flat-field flat?</A>
<LI><A NAME="tex2html376"
HREF="node20.html#SECTION00432000000000000000">Dynamic acquisition of the flat field</A>
</UL>
<BR>
<P>
Also take care that your sample does not emit fluorescent light at the chosen energy (e.g. a glass rod works at all energies, but heavier materials can be chosen to increase the efficiency at higher energies taking care that the fluorescence emission is negligible).
<P>
<DIV ALIGN="CENTER"><A NAME="fig:ffsetup"></A><A NAME="1124"></A>
<TABLE>
<CAPTION ALIGN="BOTTOM"><STRONG>Figure 2.6:</STRONG>
Sketch of the experimental setup for a dynamic acquisition of the flat field.</CAPTION>
<TR><TD>
<DIV ALIGN="CENTER">
<IMG
WIDTH="555" HEIGHT="396" ALIGN="BOTTOM" BORDER="0"
SRC="img27.png"
ALT="\includegraphics[width=\textwidth]{images/FFSetup}">
</DIV></TD></TR>
</TABLE>
</DIV>
<P>
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<LI><A NAME="tex2html377"
HREF="node21.html">What happens when I trim the detector?</A>
<UL>
<LI><A NAME="tex2html378"
HREF="node21.html#SECTION00441000000000000000">MYTHEN</A>
</UL>
<BR>
<B> Next:</B> <A NAME="tex2html325"
HREF="node18.html">What happens when I</A>
<B> Up:</B> <A NAME="tex2html321"
HREF="node14.html">Single photon counting detectors</A>
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HREF="node16.html">How do I chose</A>
&nbsp; <B> <A NAME="tex2html323"
HREF="node1.html">Contents</A></B>
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<LI><A NAME="tex2html379"
HREF="node22.html">In what consists the energy calibration of the detector?</A>
<UL>
<LI><A NAME="tex2html380"
HREF="node22.html#SECTION00451000000000000000">MYTHEN</A>
</UL>
<BR>
<LI><A NAME="tex2html381"
HREF="node23.html">Why should I change the dynamic range of the counters?</A>
<LI><A NAME="tex2html382"
HREF="node24.html">When should I enable rate correction</A>
<UL>
<LI><A NAME="tex2html383"
HREF="node24.html#SECTION00471000000000000000">How can I choose the dead time?</A>
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<BR><HR>
<ADDRESS>
Thattil Dhanya
2017-08-22
2017-08-23
</ADDRESS>
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