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Multi threaded filling of per pixel histograms for example for detector calibration 1. PixelHistogram - Generic variant expects already pedestal subtracted data 2. PedestalTrackingHistogram - Terrible name, useful class. Keeps it's own pedestal and does conversion and pedestal tracking in the worker threads. --------- Co-authored-by: Lars Erik Fröjd <froejdh_e@pc-jungfrau-02.psi.ch>
148 lines
5.7 KiB
C++
148 lines
5.7 KiB
C++
// SPDX-License-Identifier: MPL-2.0
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#include "aare/hist/PixelHistogram.hpp"
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#include "np_helper.hpp"
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#include <cstddef>
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#include <cstdint>
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#include <pybind11/numpy.h>
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#include <pybind11/pybind11.h>
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#include <pybind11/stl.h>
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#include <string>
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namespace py = pybind11;
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using namespace ::aare;
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namespace {
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template <typename StorageType>
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void define_pixel_histogram_binding(py::module &m, const char *class_name,
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const char *storage_dtype) {
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using Hist = PixelHistogram<StorageType, double>;
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const std::string doc =
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std::string("A histogram for pixel-wise statistics with float64 input "
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"axis and ") +
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storage_dtype + " bin storage";
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py::class_<Hist>(m, class_name, doc.c_str())
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.def(py::init<int, int, int, double, double, int, std::size_t>(),
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R"(
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Initialize a PixelHistogram.
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Args:
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rows: Number of rows in the detector
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cols: Number of columns in the detector
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n_bins: Number of histogram bins
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xmin: Minimum value for histogram range
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xmax: Maximum value for histogram range
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n_threads: Number of threads for parallel filling (default: 1)
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max_pending: Maximum number of images that can be queued for
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asynchronous filling before fill_async() applies
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backpressure on the caller (default: 16)
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)",
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py::kw_only(), py::arg("rows"), py::arg("cols"), py::arg("n_bins"),
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py::arg("xmin"), py::arg("xmax"), py::arg("n_threads") = 1,
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py::arg("max_pending") = std::size_t{16})
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.def(
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"fill_async",
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[](Hist &self, py::array_t<double, 0> image) {
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// Copy the numpy buffer into an owned NDArray while we
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// still hold the GIL so we don't depend on the array's
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// backing storage outliving this call.
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auto view = make_view_2d(image);
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NDArray<double, 2> owned(view);
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// Release the GIL while enqueueing - fill_async can block
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// on backpressure when the queue is full.
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py::gil_scoped_release release;
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self.fill_async(std::move(owned));
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},
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R"(
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Submit an image for asynchronous filling.
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The image is copied into an internal buffer before this call
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returns, so the caller may mutate or free the numpy array
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immediately. The actual histogram update happens on a
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background thread. If the internal queue is full this call
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blocks (with the GIL released) until a slot becomes available.
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Args:
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image: A 2D numpy array of pixel values (dtype: float64)
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)",
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py::arg("image").noconvert())
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.def("flush", &Hist::flush,
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R"(
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Block until all images submitted via fill_async() have been
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merged into the accumulators. Cheap when nothing is pending.
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)",
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py::call_guard<py::gil_scoped_release>())
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.def(
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"values",
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[](const Hist &self) {
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// values() implicitly flushes - release the GIL while it
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// does so. Allocation/copy into the NDArray runs without
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// the GIL too; only the numpy wrapping needs it.
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NDArray<StorageType, 3> *ptr = nullptr;
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{
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py::gil_scoped_release release;
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ptr = new NDArray<StorageType, 3>(self.values());
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}
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return return_image_data(ptr);
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},
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R"(
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Get the histogram data as a numpy array.
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Implicitly flushes any pending asynchronous fills before
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returning, so the snapshot is consistent with everything
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submitted up to this call.
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Returns:
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A 3D numpy array containing the histogram bins for each pixel
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)")
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.def(
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"bin_centers",
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[](const Hist &self) {
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auto ptr = new NDArray<double, 1>(self.bin_centers());
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return return_image_data(ptr);
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},
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R"(
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Get the bin centers along the value axis.
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Returns:
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A 1D numpy array containing the center values for each histogram bin
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)")
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.def(
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"bin_edges",
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[](const Hist &self) {
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auto ptr = new NDArray<double, 1>(self.bin_edges());
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return return_image_data(ptr);
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},
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R"(
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Get the bin edges along the value axis.
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Returns:
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A 1D numpy array containing the edge values for the histogram bins
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)");
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}
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} // namespace
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void define_pixel_histogram_bindings(py::module &m) {
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define_pixel_histogram_binding<double>(m, "PixelHistogram_d", "float64");
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define_pixel_histogram_binding<float>(m, "PixelHistogram_f", "float32");
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define_pixel_histogram_binding<std::uint64_t>(m, "PixelHistogram_u64",
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"uint64");
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define_pixel_histogram_binding<std::uint32_t>(m, "PixelHistogram_u32",
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"uint32");
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define_pixel_histogram_binding<std::uint16_t>(m, "PixelHistogram_u16",
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"uint16");
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define_pixel_histogram_binding<std::uint8_t>(m, "PixelHistogram_u8",
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"uint8");
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// Backwards-compatible alias for the generic Python class name.
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m.attr("PixelHistogram") = m.attr("PixelHistogram_d");
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}
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