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95 lines
3.4 KiB
C++
95 lines
3.4 KiB
C++
#include "aare/ClusterFile.hpp"
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#include "aare/defs.hpp"
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#include <cstdint>
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#include <filesystem>
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#include <pybind11/iostream.h>
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#include <pybind11/numpy.h>
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#include <pybind11/pybind11.h>
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#include <pybind11/stl.h>
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#include <pybind11/stl/filesystem.h>
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#include <string>
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// Disable warnings for unused parameters, as we ignore some
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// in the __exit__ method
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#pragma GCC diagnostic push
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#pragma GCC diagnostic ignored "-Wunused-parameter"
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namespace py = pybind11;
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using namespace ::aare;
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template <typename ClusterType>
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void define_cluster_file_io_bindings(py::module &m) {
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PYBIND11_NUMPY_DTYPE(Cluster3x3, x, y, data);
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py::class_<ClusterFile<ClusterType>>(m, "ClusterFile")
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.def(py::init<const std::filesystem::path &, size_t,
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const std::string &>(),
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py::arg(), py::arg("chunk_size") = 1000, py::arg("mode") = "r")
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.def(
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"read_clusters",
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[](ClusterFile<ClusterType> &self, size_t n_clusters) {
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auto v = new ClusterVector<ClusterType>(
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self.read_clusters(n_clusters));
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return v;
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},
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py::return_value_policy::take_ownership)
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.def(
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"read_clusters",
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[](ClusterFile<ClusterType> &self, size_t n_clusters, ROI roi) {
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auto v = new ClusterVector<ClusterType>(
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self.read_clusters(n_clusters, roi));
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return v;
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},
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py::return_value_policy::take_ownership)
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.def("read_frame",
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[](ClusterFile<ClusterType> &self) {
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auto v = new ClusterVector<ClusterType>(self.read_frame());
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return v;
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})
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.def("set_roi", &ClusterFile<ClusterType>::set_roi)
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.def(
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"set_noise_map",
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[](ClusterFile<ClusterType> &self, py::array_t<int32_t> noise_map) {
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auto view = make_view_2d(noise_map);
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self.set_noise_map(view);
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})
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.def("set_gain_map",
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[](ClusterFile<ClusterType> &self, py::array_t<double> gain_map) {
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auto view = make_view_2d(gain_map);
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self.set_gain_map(view);
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})
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// void set_gain_map(const GainMap &gain_map); //TODO do i need a
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// gainmap constructor?
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.def("close", &ClusterFile<ClusterType>::close)
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.def("write_frame", &ClusterFile<ClusterType>::write_frame)
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.def("__enter__", [](ClusterFile<ClusterType> &self) { return &self; })
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.def("__exit__",
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[](ClusterFile<ClusterType> &self,
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const std::optional<pybind11::type> &exc_type,
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const std::optional<pybind11::object> &exc_value,
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const std::optional<pybind11::object> &traceback) {
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self.close();
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})
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.def("__iter__", [](ClusterFile<ClusterType> &self) { return &self; })
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.def("__next__", [](ClusterFile<ClusterType> &self) {
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auto v = new ClusterVector<ClusterType>(
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self.read_clusters(self.chunk_size()));
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if (v->size() == 0) {
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throw py::stop_iteration();
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}
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return v;
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});
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/*
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m.def("calculate_eta2", []( aare::ClusterVector<ClusterType> &clusters) {
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auto eta2 = new NDArray<double, 2>(calculate_eta2(clusters));
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return return_image_data(eta2);
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});
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*/ //add in different file
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}
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#pragma GCC diagnostic pop |