Files
aare/src/NDArray.test.cpp
Erik Fröjdh 6a83988485 Added chi2 to fit results (#131)
- fit_gaus and fit_pol1 now return a dict
- calculate chi2 after fit
- cleaned up code
2025-02-18 21:13:27 +01:00

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#include "aare/NDArray.hpp"
#include <array>
#include <catch2/benchmark/catch_benchmark.hpp>
#include <catch2/catch_test_macros.hpp>
using aare::NDArray;
using aare::NDView;
using aare::Shape;
TEST_CASE("Initial size is zero if no size is specified") {
NDArray<double> a;
REQUIRE(a.size() == 0);
REQUIRE(a.shape() == Shape<2>{0, 0});
}
TEST_CASE("Construct from an NDView") {
std::vector<int> some_data(9, 42);
NDView<int, 2> view(some_data.data(), Shape<2>{3, 3});
NDArray<int, 2> image(view);
REQUIRE(image.shape() == view.shape());
REQUIRE(image.size() == view.size());
REQUIRE(image.data() != view.data());
for (uint32_t i = 0; i < image.size(); ++i) {
REQUIRE(image(i) == view(i));
}
// Changing the image doesn't change the view
image = 43;
for (uint32_t i = 0; i < image.size(); ++i) {
REQUIRE(image(i) != view(i));
}
}
TEST_CASE("1D image") {
std::array<int64_t, 1> shape{{20}};
NDArray<short, 1> img(shape, 3);
REQUIRE(img.size() == 20);
REQUIRE(img(5) == 3);
}
TEST_CASE("Accessing a const object") {
const NDArray<double, 3> img({3, 4, 5}, 0);
REQUIRE(img(1, 1, 1) == 0);
REQUIRE(img.size() == 3 * 4 * 5);
REQUIRE(img.shape() == Shape<3>{3, 4, 5});
REQUIRE(img.shape(0) == 3);
REQUIRE(img.shape(1) == 4);
REQUIRE(img.shape(2) == 5);
}
TEST_CASE("Indexing of a 2D image") {
std::array<int64_t, 2> shape{{3, 7}};
NDArray<long> img(shape, 5);
for (uint32_t i = 0; i != img.size(); ++i) {
REQUIRE(img(i) == 5);
}
for (uint32_t i = 0; i != img.size(); ++i) {
img(i) = i;
}
REQUIRE(img(0, 0) == 0);
REQUIRE(img(0, 1) == 1);
REQUIRE(img(1, 0) == 7);
}
TEST_CASE("Indexing of a 3D image") {
NDArray<float, 3> img{{{3, 4, 2}}, 5.0f};
for (uint32_t i = 0; i != img.size(); ++i) {
REQUIRE(img(i) == 5.0f);
}
// Double check general properties
REQUIRE(img.size() == 3 * 4 * 2);
for (uint32_t i = 0; i != img.size(); ++i) {
img(i) = float(i);
}
REQUIRE(img(0, 0, 0) == 0);
REQUIRE(img(0, 0, 1) == 1);
REQUIRE(img(0, 1, 1) == 3);
REQUIRE(img(1, 2, 0) == 12);
REQUIRE(img(2, 3, 1) == 23);
}
TEST_CASE("Divide double by int") {
NDArray<double, 1> a{{5}, 5};
NDArray<int, 1> b{{5}, 5};
a /= b;
for (auto it : a) {
REQUIRE(it == 1.0);
}
}
TEST_CASE("Elementwise multiplication of 3D image") {
std::array<int64_t, 3> shape{3, 4, 2};
NDArray<double, 3> a{shape};
NDArray<double, 3> b{shape};
for (uint32_t i = 0; i != a.size(); ++i) {
a(i) = i;
b(i) = i;
}
// auto c = a * b; // This works but the result is a lazy ArrayMul object
NDArray<double, 3> c = a * b;
REQUIRE(c(0, 0, 0) == 0 * 0);
REQUIRE(c(0, 0, 1) == 1 * 1);
REQUIRE(c(0, 1, 1) == 3 * 3);
REQUIRE(c(1, 2, 0) == 12 * 12);
REQUIRE(c(2, 3, 1) == 23 * 23);
}
NDArray<int> MultiplyNDArrayUsingOperator(NDArray<int> &a, NDArray<int> &b) {
// return a * a * b * b;
NDArray<int>c = a*b;
return c;
}
NDArray<int> MultiplyNDArrayUsingIndex(NDArray<int> &a, NDArray<int> &b) {
NDArray<int> res(a.shape());
for (uint32_t i = 0; i < a.size(); i++) {
// res(i) = a(i) * a(i) * b(i) * b(i);
res(i) = a(i) * b(i);
}
return res;
}
NDArray<int> AddNDArrayUsingOperator(NDArray<int> &a, NDArray<int> &b) {
// return a * a * b * b;
// NDArray<int>c = a+b;
NDArray<int> c(a.shape());
c = a + b;
return c;
}
NDArray<int> AddNDArrayUsingIndex(NDArray<int> &a, NDArray<int> &b) {
NDArray<int> res(a.shape());
for (uint32_t i = 0; i < a.size(); i++) {
// res(i) = a(i) * a(i) * b(i) * b(i);
res(i) = a(i) + b(i);
}
return res;
}
TEST_CASE("Compare two images") {
NDArray<int> a;
NDArray<int> b;
CHECK((a == b));
a = NDArray<int>{{5, 10}, 0};
CHECK((a != b));
b = NDArray<int>{{5, 10}, 0};
CHECK((a == b));
b(3, 3) = 7;
CHECK((a != b));
}
TEST_CASE("Size and shape matches") {
int64_t w = 15;
int64_t h = 75;
std::array<int64_t, 2> shape{w, h};
NDArray<double> a{shape};
REQUIRE(a.size() == static_cast<uint64_t>(w * h));
REQUIRE(a.shape() == shape);
}
TEST_CASE("Initial value matches for all elements") {
double v = 4.35;
NDArray<double> a{{5, 5}, v};
for (uint32_t i = 0; i < a.size(); ++i) {
REQUIRE(a(i) == v);
}
}
TEST_CASE("Data layout of 3D image, fast index last") {
NDArray<int, 3> a{{3, 3, 3}, 0};
REQUIRE(a.size() == 27);
int *ptr = a.data();
for (int i = 0; i < 9; ++i) {
*ptr++ = 10 + i;
REQUIRE(a(0, 0, i) == 10 + i);
REQUIRE(a(i) == 10 + i);
}
}
TEST_CASE("Bitwise and on data") {
NDArray<uint16_t, 1> a({3}, 0);
uint16_t mask = 0x3FF;
a(0) = 16684;
a(1) = 33068;
a(2) = 52608;
a &= mask;
REQUIRE(a(0) == 300);
REQUIRE(a(1) == 300);
REQUIRE(a(2) == 384);
}
TEST_CASE("Elementwise operations on images") {
std::array<int64_t, 2> shape{5, 5};
double a_val = 3.0;
double b_val = 8.0;
SECTION("Add two images") {
NDArray<double> A(shape, a_val);
NDArray<double> B(shape, b_val);
NDArray<double> C = A + B;
// auto C = A+B; // This works but the result is a lazy ArraySum object
// Value of C matches
for (uint32_t i = 0; i < C.size(); ++i) {
REQUIRE(C(i) == a_val + b_val);
}
// Value of A is not changed
for (uint32_t i = 0; i < A.size(); ++i) {
REQUIRE(A(i) == a_val);
}
// Value of B is not changed
for (uint32_t i = 0; i < B.size(); ++i) {
REQUIRE(B(i) == b_val);
}
// A, B and C referes to different data
REQUIRE(A.data() != B.data());
REQUIRE(B.data() != C.data());
}
SECTION("Subtract two images") {
NDArray<double> A(shape, a_val);
NDArray<double> B(shape, b_val);
NDArray<double> C = A - B;
// auto C = A - B; // This works but the result is a lazy ArraySub object
// Value of C matches
for (uint32_t i = 0; i < C.size(); ++i) {
REQUIRE(C(i) == a_val - b_val);
}
// Value of A is not changed
for (uint32_t i = 0; i < A.size(); ++i) {
REQUIRE(A(i) == a_val);
}
// Value of B is not changed
for (uint32_t i = 0; i < B.size(); ++i) {
REQUIRE(B(i) == b_val);
}
// A, B and C referes to different data
REQUIRE(A.data() != B.data());
REQUIRE(B.data() != C.data());
}
SECTION("Multiply two images") {
NDArray<double> A(shape, a_val);
NDArray<double> B(shape, b_val);
// auto C = A * B; // This works but the result is a lazy ArrayMul object
NDArray<double> C = A * B;
// Value of C matches
for (uint32_t i = 0; i < C.size(); ++i) {
REQUIRE(C(i) == a_val * b_val);
}
// Value of A is not changed
for (uint32_t i = 0; i < A.size(); ++i) {
REQUIRE(A(i) == a_val);
}
// Value of B is not changed
for (uint32_t i = 0; i < B.size(); ++i) {
REQUIRE(B(i) == b_val);
}
// A, B and C referes to different data
REQUIRE(A.data() != B.data());
REQUIRE(B.data() != C.data());
}
SECTION("Divide two images") {
NDArray<double> A(shape, a_val);
NDArray<double> B(shape, b_val);
// auto C = A / B; // This works but the result is a lazy ArrayDiv object
NDArray<double> C = A / B;
// Value of C matches
for (uint32_t i = 0; i < C.size(); ++i) {
REQUIRE(C(i) == a_val / b_val);
}
// Value of A is not changed
for (uint32_t i = 0; i < A.size(); ++i) {
REQUIRE(A(i) == a_val);
}
// Value of B is not changed
for (uint32_t i = 0; i < B.size(); ++i) {
REQUIRE(B(i) == b_val);
}
// A, B and C referes to different data
REQUIRE(A.data() != B.data());
REQUIRE(B.data() != C.data());
}
SECTION("subtract scalar") {
NDArray<double> A(shape, a_val);
NDArray<double> B(shape, b_val);
double v = 1.0;
auto C = A - v;
REQUIRE(C.data() != A.data());
// Value of C matches
for (uint32_t i = 0; i < C.size(); ++i) {
REQUIRE(C(i) == a_val - v);
}
// Value of A is not changed
for (uint32_t i = 0; i < A.size(); ++i) {
REQUIRE(A(i) == a_val);
}
}
SECTION("add scalar") {
NDArray<double> A(shape, a_val);
NDArray<double> B(shape, b_val);
double v = 1.0;
auto C = A + v;
REQUIRE(C.data() != A.data());
// Value of C matches
for (uint32_t i = 0; i < C.size(); ++i) {
REQUIRE(C(i) == a_val + v);
}
// Value of A is not changed
for (uint32_t i = 0; i < A.size(); ++i) {
REQUIRE(A(i) == a_val);
}
}
SECTION("divide with scalar") {
NDArray<double> A(shape, a_val);
NDArray<double> B(shape, b_val);
double v = 3.7;
auto C = A / v;
REQUIRE(C.data() != A.data());
// Value of C matches
for (uint32_t i = 0; i < C.size(); ++i) {
REQUIRE(C(i) == a_val / v);
}
// Value of A is not changed
for (uint32_t i = 0; i < A.size(); ++i) {
REQUIRE(A(i) == a_val);
}
}
SECTION("multiply with scalar") {
NDArray<double> A(shape, a_val);
NDArray<double> B(shape, b_val);
double v = 3.7;
auto C = A / v;
REQUIRE(C.data() != A.data());
// Value of C matches
for (uint32_t i = 0; i < C.size(); ++i) {
REQUIRE(C(i) == a_val / v);
}
// Value of A is not changed
for (uint32_t i = 0; i < A.size(); ++i) {
REQUIRE(A(i) == a_val);
}
}
}
TEST_CASE("Assign an std::array to a 1D NDArray") {
NDArray<int, 1> a{{5}, 0};
std::array<int, 5> b{1, 2, 3, 4, 5};
a = b;
for (uint32_t i = 0; i < a.size(); ++i) {
REQUIRE(a(i) == b[i]);
}
}
TEST_CASE("Assign an std::array to a 1D NDArray of a different size") {
NDArray<int, 1> a{{3}, 0};
std::array<int, 5> b{1, 2, 3, 4, 5};
a = b;
REQUIRE(a.size() == 5);
for (uint32_t i = 0; i < a.size(); ++i) {
REQUIRE(a(i) == b[i]);
}
}
TEST_CASE("Construct an NDArray from an std::array") {
std::array<int, 5> b{1, 2, 3, 4, 5};
NDArray<int, 1> a(b);
for (uint32_t i = 0; i < a.size(); ++i) {
REQUIRE(a(i) == b[i]);
}
}