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<div class="headertitle"><div class="title">VariableSizeClusterFinder.hpp</div></div>
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<a href="VariableSizeClusterFinder_8hpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a id="l00001" name="l00001"></a><span class="lineno"> 1</span><span class="preprocessor">#pragma once</span></div>
<div class="line"><a id="l00002" name="l00002"></a><span class="lineno"> 2</span> </div>
<div class="line"><a id="l00003" name="l00003"></a><span class="lineno"> 3</span><span class="preprocessor">#include &lt;algorithm&gt;</span></div>
<div class="line"><a id="l00004" name="l00004"></a><span class="lineno"> 4</span><span class="preprocessor">#include &lt;map&gt;</span></div>
<div class="line"><a id="l00005" name="l00005"></a><span class="lineno"> 5</span><span class="preprocessor">#include &lt;unordered_map&gt;</span></div>
<div class="line"><a id="l00006" name="l00006"></a><span class="lineno"> 6</span><span class="preprocessor">#include &lt;vector&gt;</span></div>
<div class="line"><a id="l00007" name="l00007"></a><span class="lineno"> 7</span> </div>
<div class="line"><a id="l00008" name="l00008"></a><span class="lineno"> 8</span><span class="preprocessor">#include &quot;<a class="code" href="NDArray_8hpp.html">aare/core/NDArray.hpp</a>&quot;</span></div>
<div class="line"><a id="l00009" name="l00009"></a><span class="lineno"> 9</span> </div>
<div class="line"><a id="l00010" name="l00010"></a><span class="lineno"><a class="line" href="VariableSizeClusterFinder_8hpp.html#af7298d7428936e9c8ecb92df87bd621c"> 10</a></span><span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code hl_variable" href="VariableSizeClusterFinder_8hpp.html#af7298d7428936e9c8ecb92df87bd621c">MAX_CLUSTER_SIZE</a> = 200;</div>
<div class="line"><a id="l00011" name="l00011"></a><span class="lineno"> 11</span><span class="keyword">namespace </span><a class="code hl_namespace" href="namespaceaare.html">aare</a> {</div>
<div class="line"><a id="l00012" name="l00012"></a><span class="lineno"> 12</span> </div>
<div class="line"><a id="l00013" name="l00013"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html"> 13</a></span><span class="keyword">template</span> &lt;<span class="keyword">typename</span> T&gt; <span class="keyword">class </span><a class="code hl_class" href="classaare_1_1ClusterFinder.html">ClusterFinder</a> {</div>
<div class="line"><a id="l00014" name="l00014"></a><span class="lineno"> 14</span> <span class="keyword">public</span>:</div>
<div class="line"><a id="l00015" name="l00015"></a><span class="lineno"><a class="line" href="structaare_1_1ClusterFinder_1_1Hit.html"> 15</a></span> <span class="keyword">struct </span><a class="code hl_struct" href="structaare_1_1ClusterFinder_1_1Hit.html">Hit</a> {</div>
<div class="line"><a id="l00016" name="l00016"></a><span class="lineno"><a class="line" href="structaare_1_1ClusterFinder_1_1Hit.html#a467c1a642f4f886142031a9cdedf8974"> 16</a></span> int16_t <a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a467c1a642f4f886142031a9cdedf8974">size</a>{};</div>
<div class="line"><a id="l00017" name="l00017"></a><span class="lineno"><a class="line" href="structaare_1_1ClusterFinder_1_1Hit.html#a62e5ba47c8626344a6816906cb440b30"> 17</a></span> int16_t <a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a62e5ba47c8626344a6816906cb440b30">row</a>{};</div>
<div class="line"><a id="l00018" name="l00018"></a><span class="lineno"><a class="line" href="structaare_1_1ClusterFinder_1_1Hit.html#afcae3086d96e4761ab437d227a12e872"> 18</a></span> int16_t <a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#afcae3086d96e4761ab437d227a12e872">col</a>{};</div>
<div class="line"><a id="l00019" name="l00019"></a><span class="lineno"><a class="line" href="structaare_1_1ClusterFinder_1_1Hit.html#a3f2ca05a76fa614ab5cfc70c0197093c"> 19</a></span> uint16_t <a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a3f2ca05a76fa614ab5cfc70c0197093c">reserved</a>{}; <span class="comment">// for alignment</span></div>
<div class="line"><a id="l00020" name="l00020"></a><span class="lineno"><a class="line" href="structaare_1_1ClusterFinder_1_1Hit.html#aefdfa834b42bdedc95f872267e9ef08a"> 20</a></span> T <a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#aefdfa834b42bdedc95f872267e9ef08a">energy</a>{};</div>
<div class="line"><a id="l00021" name="l00021"></a><span class="lineno"><a class="line" href="structaare_1_1ClusterFinder_1_1Hit.html#a92ff57e741cf640d00dce1976616837a"> 21</a></span> T <a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a92ff57e741cf640d00dce1976616837a">max</a>{};</div>
<div class="line"><a id="l00022" name="l00022"></a><span class="lineno"> 22</span> </div>
<div class="line"><a id="l00023" name="l00023"></a><span class="lineno"> 23</span> <span class="comment">// std::vector&lt;int16_t&gt; rows{};</span></div>
<div class="line"><a id="l00024" name="l00024"></a><span class="lineno"> 24</span> <span class="comment">// std::vector&lt;int16_t&gt; cols{};</span></div>
<div class="line"><a id="l00025" name="l00025"></a><span class="lineno"><a class="line" href="structaare_1_1ClusterFinder_1_1Hit.html#a284bcfb7b46f098ec297533aff39991e"> 25</a></span> int16_t <a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a284bcfb7b46f098ec297533aff39991e">rows</a>[<a class="code hl_variable" href="VariableSizeClusterFinder_8hpp.html#af7298d7428936e9c8ecb92df87bd621c">MAX_CLUSTER_SIZE</a>] = {0};</div>
<div class="line"><a id="l00026" name="l00026"></a><span class="lineno"><a class="line" href="structaare_1_1ClusterFinder_1_1Hit.html#a567f82696f8b38154602c389ae551306"> 26</a></span> int16_t <a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a567f82696f8b38154602c389ae551306">cols</a>[<a class="code hl_variable" href="VariableSizeClusterFinder_8hpp.html#af7298d7428936e9c8ecb92df87bd621c">MAX_CLUSTER_SIZE</a>] = {0};</div>
<div class="line"><a id="l00027" name="l00027"></a><span class="lineno"><a class="line" href="structaare_1_1ClusterFinder_1_1Hit.html#a6c31a388fb5bcc77aed32dd5fa5fcb08"> 27</a></span> <span class="keywordtype">double</span> <a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a6c31a388fb5bcc77aed32dd5fa5fcb08">enes</a>[<a class="code hl_variable" href="VariableSizeClusterFinder_8hpp.html#af7298d7428936e9c8ecb92df87bd621c">MAX_CLUSTER_SIZE</a>] = {0};</div>
<div class="line"><a id="l00028" name="l00028"></a><span class="lineno"> 28</span> };</div>
<div class="line"><a id="l00029" name="l00029"></a><span class="lineno"> 29</span> </div>
<div class="line"><a id="l00030" name="l00030"></a><span class="lineno"> 30</span> <span class="keyword">private</span>:</div>
<div class="line"><a id="l00031" name="l00031"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a87ae02ed18b8d51cf34d6dcc4a0a11b1"> 31</a></span> <span class="keyword">const</span> std::array&lt;ssize_t, 2&gt; <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a87ae02ed18b8d51cf34d6dcc4a0a11b1">shape_</a>;</div>
<div class="line"><a id="l00032" name="l00032"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a77a7f9093806a6b66596262c726aedff"> 32</a></span> <a class="code hl_class" href="classaare_1_1NDView.html">NDView&lt;T, 2&gt;</a> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a77a7f9093806a6b66596262c726aedff">original_</a>;</div>
<div class="line"><a id="l00033" name="l00033"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a0a507adf23a53c14e823c8721c8139dc"> 33</a></span> <a class="code hl_class" href="classaare_1_1NDArray.html">NDArray&lt;int, 2&gt;</a> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a0a507adf23a53c14e823c8721c8139dc">labeled_</a>;</div>
<div class="line"><a id="l00034" name="l00034"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a86342541978eac118b16eefa026930d4"> 34</a></span> <a class="code hl_class" href="classaare_1_1NDArray.html">NDArray&lt;int, 2&gt;</a> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a86342541978eac118b16eefa026930d4">peripheral_labeled_</a>;</div>
<div class="line"><a id="l00035" name="l00035"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#aca8f21925565b4f3dbf4677d2ca6ba64"> 35</a></span> <a class="code hl_class" href="classaare_1_1NDArray.html">NDArray&lt;bool, 2&gt;</a> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#aca8f21925565b4f3dbf4677d2ca6ba64">binary_</a>; <span class="comment">// over threshold flag</span></div>
<div class="line"><a id="l00036" name="l00036"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a2726725360133a70fce11b8072cf2a93"> 36</a></span> T <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a2726725360133a70fce11b8072cf2a93">threshold_</a>;</div>
<div class="line"><a id="l00037" name="l00037"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a8044d4bdabc6ed090f07bfddc362f2eb"> 37</a></span> <a class="code hl_class" href="classaare_1_1NDView.html">NDView&lt;T, 2&gt;</a> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a8044d4bdabc6ed090f07bfddc362f2eb">noiseMap</a>;</div>
<div class="line"><a id="l00038" name="l00038"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#ae7622ae945b849df6bad3d2cc0347370"> 38</a></span> <span class="keywordtype">bool</span> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#ae7622ae945b849df6bad3d2cc0347370">use_noise_map</a> = <span class="keyword">false</span>;</div>
<div class="line"><a id="l00039" name="l00039"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#af933139fed8103cab83572a6ba449f36"> 39</a></span> <span class="keywordtype">int</span> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#af933139fed8103cab83572a6ba449f36">peripheralThresholdFactor_</a> = 5;</div>
<div class="line"><a id="l00040" name="l00040"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a91e708f8f94adfb3af7e5d9c3a748bb3"> 40</a></span> <span class="keywordtype">int</span> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a91e708f8f94adfb3af7e5d9c3a748bb3">current_label</a>;</div>
<div class="line"><a id="l00041" name="l00041"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a69ffad49f0d31fdf9993774d219f87e8"> 41</a></span> <span class="keyword">const</span> std::array&lt;int, 4&gt; <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a69ffad49f0d31fdf9993774d219f87e8">di</a>{{0, -1, -1, -1}}; <span class="comment">// row ### 8-neighbour by scaning from left to right</span></div>
<div class="line"><a id="l00042" name="l00042"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a7575c70f662ffa316882eec6f2b865e7"> 42</a></span> <span class="keyword">const</span> std::array&lt;int, 4&gt; <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a7575c70f662ffa316882eec6f2b865e7">dj</a>{{-1, -1, 0, 1}}; <span class="comment">// col ### 8-neighbour by scaning from top to bottom</span></div>
<div class="line"><a id="l00043" name="l00043"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#af97013b5f3fff727149b4e09c9d485a3"> 43</a></span> <span class="keyword">const</span> std::array&lt;int, 8&gt; <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#af97013b5f3fff727149b4e09c9d485a3">di_</a>{{0, 0, -1, 1, -1, 1, -1, 1}}; <span class="comment">// row</span></div>
<div class="line"><a id="l00044" name="l00044"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a9809de5007aeb2095b5ec74f68b6a7d8"> 44</a></span> <span class="keyword">const</span> std::array&lt;int, 8&gt; <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a9809de5007aeb2095b5ec74f68b6a7d8">dj_</a>{{-1, 1, 0, 0, 1, -1, -1, 1}}; <span class="comment">// col</span></div>
<div class="line"><a id="l00045" name="l00045"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#aeeec655301ed05e4c5ee9201e828b7f0"> 45</a></span> std::map&lt;int, int&gt; <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#aeeec655301ed05e4c5ee9201e828b7f0">child</a>; <span class="comment">// heirachy: key: child; val: parent</span></div>
<div class="line"><a id="l00046" name="l00046"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#ad4b7557ac7b34a7fd188564e22d634ec"> 46</a></span> std::unordered_map&lt;int, Hit&gt; <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#ad4b7557ac7b34a7fd188564e22d634ec">h_size</a>;</div>
<div class="line"><a id="l00047" name="l00047"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#ac228fbe6a24d8b2179db87aa0cfecc86"> 47</a></span> std::vector&lt;Hit&gt; <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#ac228fbe6a24d8b2179db87aa0cfecc86">hits</a>;</div>
<div class="line"><a id="l00048" name="l00048"></a><span class="lineno"> 48</span> <span class="comment">// std::vector&lt;std::vector&lt;int16_t&gt;&gt; row</span></div>
<div class="line"><a id="l00049" name="l00049"></a><span class="lineno"> 49</span> <span class="keywordtype">int</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#ac6372eadf0bff57bd560bd07cd59da96">check_neighbours</a>(<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j);</div>
<div class="line"><a id="l00050" name="l00050"></a><span class="lineno"> 50</span> </div>
<div class="line"><a id="l00051" name="l00051"></a><span class="lineno"> 51</span> <span class="keyword">public</span>:</div>
<div class="line"><a id="l00052" name="l00052"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a95c3c74dcd2812659c4664f8896dcc6e"> 52</a></span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a95c3c74dcd2812659c4664f8896dcc6e">ClusterFinder</a>(image_shape shape, T threshold)</div>
<div class="line"><a id="l00053" name="l00053"></a><span class="lineno"> 53</span> : <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a87ae02ed18b8d51cf34d6dcc4a0a11b1">shape_</a>(shape), <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a0a507adf23a53c14e823c8721c8139dc">labeled_</a>(shape, 0), <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a86342541978eac118b16eefa026930d4">peripheral_labeled_</a>(shape, 0), <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#aca8f21925565b4f3dbf4677d2ca6ba64">binary_</a>(shape), <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a2726725360133a70fce11b8072cf2a93">threshold_</a>(threshold) {</div>
<div class="line"><a id="l00054" name="l00054"></a><span class="lineno"> 54</span> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#ac228fbe6a24d8b2179db87aa0cfecc86">hits</a>.reserve(2000);</div>
<div class="line"><a id="l00055" name="l00055"></a><span class="lineno"> 55</span> }</div>
<div class="line"><a id="l00056" name="l00056"></a><span class="lineno"> 56</span> </div>
<div class="line"><a id="l00057" name="l00057"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a8df807dc085267ece8c8329d546c1560"> 57</a></span> <a class="code hl_class" href="classaare_1_1NDArray.html">NDArray&lt;int, 2&gt;</a> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a8df807dc085267ece8c8329d546c1560">labeled</a>() { <span class="keywordflow">return</span> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a0a507adf23a53c14e823c8721c8139dc">labeled_</a>; }</div>
<div class="line"><a id="l00058" name="l00058"></a><span class="lineno"> 58</span> </div>
<div class="line"><a id="l00059" name="l00059"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#acd1fc878a5043e0adc8f085d1edf3ba6"> 59</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#acd1fc878a5043e0adc8f085d1edf3ba6">set_noiseMap</a>(<a class="code hl_class" href="classaare_1_1NDView.html">NDView&lt;T, 2&gt;</a> noise_map) {</div>
<div class="line"><a id="l00060" name="l00060"></a><span class="lineno"> 60</span> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#a8044d4bdabc6ed090f07bfddc362f2eb">noiseMap</a> = noise_map;</div>
<div class="line"><a id="l00061" name="l00061"></a><span class="lineno"> 61</span> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#ae7622ae945b849df6bad3d2cc0347370">use_noise_map</a> = <span class="keyword">true</span>;</div>
<div class="line"><a id="l00062" name="l00062"></a><span class="lineno"> 62</span> }</div>
<div class="line"><a id="l00063" name="l00063"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a3d8448ccd2478a52075a4b7d5e090b2f"> 63</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a3d8448ccd2478a52075a4b7d5e090b2f">set_peripheralThresholdFactor</a>(<span class="keywordtype">int</span> factor) { <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#af933139fed8103cab83572a6ba449f36">peripheralThresholdFactor_</a> = factor; }</div>
<div class="line"><a id="l00064" name="l00064"></a><span class="lineno"> 64</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#ab880d2c07964ee558a85daed3b3ec181">find_clusters</a>(<a class="code hl_class" href="classaare_1_1NDView.html">NDView&lt;T, 2&gt;</a> img);</div>
<div class="line"><a id="l00065" name="l00065"></a><span class="lineno"> 65</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#af33f83aeeb4187f826919270b8b38391">find_clusters_X</a>(<a class="code hl_class" href="classaare_1_1NDView.html">NDView&lt;T, 2&gt;</a> img);</div>
<div class="line"><a id="l00066" name="l00066"></a><span class="lineno"> 66</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a64540f74ba953ae2ba2efab9f06e9fc5">rec_FillHit</a>(<span class="keywordtype">int</span> clusterIndex, <span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j);</div>
<div class="line"><a id="l00067" name="l00067"></a><span class="lineno"> 67</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#ab25d54418b721d429f6141da73cc2a41">single_pass</a>(<a class="code hl_class" href="classaare_1_1NDView.html">NDView&lt;T, 2&gt;</a> img);</div>
<div class="line"><a id="l00068" name="l00068"></a><span class="lineno"> 68</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a7993fb06ee06a24ede5a4ddd94f8a987">first_pass</a>();</div>
<div class="line"><a id="l00069" name="l00069"></a><span class="lineno"> 69</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a6630ba010b0d0b6b4cd8aefe98a1bd9e">second_pass</a>();</div>
<div class="line"><a id="l00070" name="l00070"></a><span class="lineno"> 70</span> <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a053a2b1729301c1bda8b78a8187112b6">store_clusters</a>();</div>
<div class="line"><a id="l00071" name="l00071"></a><span class="lineno"> 71</span> </div>
<div class="line"><a id="l00072" name="l00072"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a4695c04a848715d073455b76241119b4"> 72</a></span> std::vector&lt;Hit&gt; <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a4695c04a848715d073455b76241119b4">steal_hits</a>() {</div>
<div class="line"><a id="l00073" name="l00073"></a><span class="lineno"> 73</span> std::vector&lt;Hit&gt; tmp;</div>
<div class="line"><a id="l00074" name="l00074"></a><span class="lineno"> 74</span> std::swap(tmp, <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#ac228fbe6a24d8b2179db87aa0cfecc86">hits</a>);</div>
<div class="line"><a id="l00075" name="l00075"></a><span class="lineno"> 75</span> <span class="keywordflow">return</span> tmp;</div>
<div class="line"><a id="l00076" name="l00076"></a><span class="lineno"> 76</span> };</div>
<div class="line"><a id="l00077" name="l00077"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a405e7f0d0eabc9a93099763f4eaa8fbc"> 77</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a405e7f0d0eabc9a93099763f4eaa8fbc">clear_hits</a>() { <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#ac228fbe6a24d8b2179db87aa0cfecc86">hits</a>.clear(); };</div>
<div class="line"><a id="l00078" name="l00078"></a><span class="lineno"> 78</span> </div>
<div class="line"><a id="l00079" name="l00079"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#aed823a8611547fb93d6accacdd61b55c"> 79</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#aed823a8611547fb93d6accacdd61b55c">print_connections</a>() {</div>
<div class="line"><a id="l00080" name="l00080"></a><span class="lineno"> 80</span> fmt::print(<span class="stringliteral">&quot;Connections:\n&quot;</span>);</div>
<div class="line"><a id="l00081" name="l00081"></a><span class="lineno"> 81</span> <span class="keywordflow">for</span> (<span class="keyword">auto</span> it = <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#aeeec655301ed05e4c5ee9201e828b7f0">child</a>.begin(); it != <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#aeeec655301ed05e4c5ee9201e828b7f0">child</a>.end(); ++it) {</div>
<div class="line"><a id="l00082" name="l00082"></a><span class="lineno"> 82</span> fmt::print(<span class="stringliteral">&quot;{} -&gt; {}\n&quot;</span>, it-&gt;first, it-&gt;second);</div>
<div class="line"><a id="l00083" name="l00083"></a><span class="lineno"> 83</span> }</div>
<div class="line"><a id="l00084" name="l00084"></a><span class="lineno"> 84</span> }</div>
<div class="line"><a id="l00085" name="l00085"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a301516e99319ee02ecf4c44f8310ce16"> 85</a></span> <span class="keywordtype">size_t</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a301516e99319ee02ecf4c44f8310ce16">total_clusters</a>()<span class="keyword"> const </span>{</div>
<div class="line"><a id="l00086" name="l00086"></a><span class="lineno"> 86</span> <span class="comment">// TODO! fix for stealing</span></div>
<div class="line"><a id="l00087" name="l00087"></a><span class="lineno"> 87</span> <span class="keywordflow">return</span> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#ac228fbe6a24d8b2179db87aa0cfecc86">hits</a>.size();</div>
<div class="line"><a id="l00088" name="l00088"></a><span class="lineno"> 88</span> }</div>
<div class="line"><a id="l00089" name="l00089"></a><span class="lineno"> 89</span> </div>
<div class="line"><a id="l00090" name="l00090"></a><span class="lineno"> 90</span> <span class="keyword">private</span>:</div>
<div class="line"><a id="l00091" name="l00091"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a1a31f9419dd90e3136bf1c59e53fbad7"> 91</a></span> <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a1a31f9419dd90e3136bf1c59e53fbad7">add_link</a>(<span class="keywordtype">int</span> from, <span class="keywordtype">int</span> to) {</div>
<div class="line"><a id="l00092" name="l00092"></a><span class="lineno"> 92</span> <span class="comment">// we want to add key from -&gt; value to</span></div>
<div class="line"><a id="l00093" name="l00093"></a><span class="lineno"> 93</span> <span class="comment">// fmt::print(&quot;add_link({},{})\n&quot;, from, to);</span></div>
<div class="line"><a id="l00094" name="l00094"></a><span class="lineno"> 94</span> <span class="keyword">auto</span> it = <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#aeeec655301ed05e4c5ee9201e828b7f0">child</a>.find(from);</div>
<div class="line"><a id="l00095" name="l00095"></a><span class="lineno"> 95</span> <span class="keywordflow">if</span> (it == <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#aeeec655301ed05e4c5ee9201e828b7f0">child</a>.end()) {</div>
<div class="line"><a id="l00096" name="l00096"></a><span class="lineno"> 96</span> <a class="code hl_variable" href="classaare_1_1ClusterFinder.html#aeeec655301ed05e4c5ee9201e828b7f0">child</a>[from] = to;</div>
<div class="line"><a id="l00097" name="l00097"></a><span class="lineno"> 97</span> } <span class="keywordflow">else</span> {</div>
<div class="line"><a id="l00098" name="l00098"></a><span class="lineno"> 98</span> <span class="comment">// found need to disambiguate</span></div>
<div class="line"><a id="l00099" name="l00099"></a><span class="lineno"> 99</span> <span class="keywordflow">if</span> (it-&gt;second == to)</div>
<div class="line"><a id="l00100" name="l00100"></a><span class="lineno"> 100</span> <span class="keywordflow">return</span>;</div>
<div class="line"><a id="l00101" name="l00101"></a><span class="lineno"> 101</span> <span class="keywordflow">else</span> {</div>
<div class="line"><a id="l00102" name="l00102"></a><span class="lineno"> 102</span> <span class="keywordflow">if</span> (it-&gt;second &gt; to) {</div>
<div class="line"><a id="l00103" name="l00103"></a><span class="lineno"> 103</span> <span class="comment">// child[from] = to;</span></div>
<div class="line"><a id="l00104" name="l00104"></a><span class="lineno"> 104</span> <span class="keyword">auto</span> old = it-&gt;second;</div>
<div class="line"><a id="l00105" name="l00105"></a><span class="lineno"> 105</span> it-&gt;second = to;</div>
<div class="line"><a id="l00106" name="l00106"></a><span class="lineno"> 106</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a1a31f9419dd90e3136bf1c59e53fbad7">add_link</a>(old, to);</div>
<div class="line"><a id="l00107" name="l00107"></a><span class="lineno"> 107</span> } <span class="keywordflow">else</span> {</div>
<div class="line"><a id="l00108" name="l00108"></a><span class="lineno"> 108</span> <span class="comment">// found value is smaller than what we want to link</span></div>
<div class="line"><a id="l00109" name="l00109"></a><span class="lineno"> 109</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a1a31f9419dd90e3136bf1c59e53fbad7">add_link</a>(to, it-&gt;second);</div>
<div class="line"><a id="l00110" name="l00110"></a><span class="lineno"> 110</span> }</div>
<div class="line"><a id="l00111" name="l00111"></a><span class="lineno"> 111</span> }</div>
<div class="line"><a id="l00112" name="l00112"></a><span class="lineno"> 112</span> }</div>
<div class="line"><a id="l00113" name="l00113"></a><span class="lineno"> 113</span> }</div>
<div class="line"><a id="l00114" name="l00114"></a><span class="lineno"> 114</span>};</div>
<div class="line"><a id="l00115" name="l00115"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#ac6372eadf0bff57bd560bd07cd59da96"> 115</a></span><span class="keyword">template</span> &lt;<span class="keyword">typename</span> T&gt; <span class="keywordtype">int</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#ac6372eadf0bff57bd560bd07cd59da96">ClusterFinder&lt;T&gt;::check_neighbours</a>(<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j) {</div>
<div class="line"><a id="l00116" name="l00116"></a><span class="lineno"> 116</span> std::vector&lt;int&gt; neighbour_labels;</div>
<div class="line"><a id="l00117" name="l00117"></a><span class="lineno"> 117</span> </div>
<div class="line"><a id="l00118" name="l00118"></a><span class="lineno"> 118</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> k = 0; k &lt; 4; ++k) {</div>
<div class="line"><a id="l00119" name="l00119"></a><span class="lineno"> 119</span> <span class="keyword">const</span> <span class="keyword">auto</span> row = i + di[k];</div>
<div class="line"><a id="l00120" name="l00120"></a><span class="lineno"> 120</span> <span class="keyword">const</span> <span class="keyword">auto</span> col = j + dj[k];</div>
<div class="line"><a id="l00121" name="l00121"></a><span class="lineno"> 121</span> <span class="keywordflow">if</span> (row &gt;= 0 &amp;&amp; col &gt;= 0 &amp;&amp; row &lt; shape_[0] &amp;&amp; col &lt; shape_[1]) {</div>
<div class="line"><a id="l00122" name="l00122"></a><span class="lineno"> 122</span> <span class="keyword">auto</span> tmp = labeled_.value(i + di[k], j + dj[k]);</div>
<div class="line"><a id="l00123" name="l00123"></a><span class="lineno"> 123</span> <span class="keywordflow">if</span> (tmp != 0)</div>
<div class="line"><a id="l00124" name="l00124"></a><span class="lineno"> 124</span> neighbour_labels.push_back(tmp);</div>
<div class="line"><a id="l00125" name="l00125"></a><span class="lineno"> 125</span> }</div>
<div class="line"><a id="l00126" name="l00126"></a><span class="lineno"> 126</span> }</div>
<div class="line"><a id="l00127" name="l00127"></a><span class="lineno"> 127</span> </div>
<div class="line"><a id="l00128" name="l00128"></a><span class="lineno"> 128</span> <span class="keywordflow">if</span> (neighbour_labels.size() == 0) {</div>
<div class="line"><a id="l00129" name="l00129"></a><span class="lineno"> 129</span> <span class="keywordflow">return</span> 0;</div>
<div class="line"><a id="l00130" name="l00130"></a><span class="lineno"> 130</span> } <span class="keywordflow">else</span> {</div>
<div class="line"><a id="l00131" name="l00131"></a><span class="lineno"> 131</span> </div>
<div class="line"><a id="l00132" name="l00132"></a><span class="lineno"> 132</span> <span class="comment">// need to sort and add to union field</span></div>
<div class="line"><a id="l00133" name="l00133"></a><span class="lineno"> 133</span> std::sort(neighbour_labels.rbegin(), neighbour_labels.rend());</div>
<div class="line"><a id="l00134" name="l00134"></a><span class="lineno"> 134</span> <span class="keyword">auto</span> first = neighbour_labels.begin();</div>
<div class="line"><a id="l00135" name="l00135"></a><span class="lineno"> 135</span> <span class="keyword">auto</span> last = std::unique(first, neighbour_labels.end());</div>
<div class="line"><a id="l00136" name="l00136"></a><span class="lineno"> 136</span> <span class="keywordflow">if</span> (last - first == 1)</div>
<div class="line"><a id="l00137" name="l00137"></a><span class="lineno"> 137</span> <span class="keywordflow">return</span> *neighbour_labels.begin();</div>
<div class="line"><a id="l00138" name="l00138"></a><span class="lineno"> 138</span> </div>
<div class="line"><a id="l00139" name="l00139"></a><span class="lineno"> 139</span> <span class="keywordflow">for</span> (<span class="keyword">auto</span> current = first; current != last - 1; ++current) {</div>
<div class="line"><a id="l00140" name="l00140"></a><span class="lineno"> 140</span> <span class="keyword">auto</span> next = current + 1;</div>
<div class="line"><a id="l00141" name="l00141"></a><span class="lineno"> 141</span> add_link(*current, *next);</div>
<div class="line"><a id="l00142" name="l00142"></a><span class="lineno"> 142</span> }</div>
<div class="line"><a id="l00143" name="l00143"></a><span class="lineno"> 143</span> <span class="keywordflow">return</span> neighbour_labels.back(); <span class="comment">// already sorted</span></div>
<div class="line"><a id="l00144" name="l00144"></a><span class="lineno"> 144</span> }</div>
<div class="line"><a id="l00145" name="l00145"></a><span class="lineno"> 145</span>}</div>
<div class="line"><a id="l00146" name="l00146"></a><span class="lineno"> 146</span> </div>
<div class="line"><a id="l00147" name="l00147"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#ab880d2c07964ee558a85daed3b3ec181"> 147</a></span><span class="keyword">template</span> &lt;<span class="keyword">typename</span> T&gt; <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#ab880d2c07964ee558a85daed3b3ec181">ClusterFinder&lt;T&gt;::find_clusters</a>(<a class="code hl_class" href="classaare_1_1NDView.html">NDView&lt;T, 2&gt;</a> img) {</div>
<div class="line"><a id="l00148" name="l00148"></a><span class="lineno"> 148</span> original_ = img;</div>
<div class="line"><a id="l00149" name="l00149"></a><span class="lineno"> 149</span> labeled_ = 0;</div>
<div class="line"><a id="l00150" name="l00150"></a><span class="lineno"> 150</span> peripheral_labeled_ = 0;</div>
<div class="line"><a id="l00151" name="l00151"></a><span class="lineno"> 151</span> current_label = 0;</div>
<div class="line"><a id="l00152" name="l00152"></a><span class="lineno"> 152</span> child.clear();</div>
<div class="line"><a id="l00153" name="l00153"></a><span class="lineno"> 153</span> first_pass();</div>
<div class="line"><a id="l00154" name="l00154"></a><span class="lineno"> 154</span> <span class="comment">// print_connections();</span></div>
<div class="line"><a id="l00155" name="l00155"></a><span class="lineno"> 155</span> second_pass();</div>
<div class="line"><a id="l00156" name="l00156"></a><span class="lineno"> 156</span> store_clusters();</div>
<div class="line"><a id="l00157" name="l00157"></a><span class="lineno"> 157</span>}</div>
<div class="line"><a id="l00158" name="l00158"></a><span class="lineno"> 158</span> </div>
<div class="line"><a id="l00159" name="l00159"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#af33f83aeeb4187f826919270b8b38391"> 159</a></span><span class="keyword">template</span> &lt;<span class="keyword">typename</span> T&gt; <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#af33f83aeeb4187f826919270b8b38391">ClusterFinder&lt;T&gt;::find_clusters_X</a>(<a class="code hl_class" href="classaare_1_1NDView.html">NDView&lt;T, 2&gt;</a> img) {</div>
<div class="line"><a id="l00160" name="l00160"></a><span class="lineno"> 160</span> original_ = img;</div>
<div class="line"><a id="l00161" name="l00161"></a><span class="lineno"> 161</span> <span class="keywordtype">int</span> clusterIndex = 0;</div>
<div class="line"><a id="l00162" name="l00162"></a><span class="lineno"> 162</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; shape_[0]; ++i) {</div>
<div class="line"><a id="l00163" name="l00163"></a><span class="lineno"> 163</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> j = 0; j &lt; shape_[1]; ++j) {</div>
<div class="line"><a id="l00164" name="l00164"></a><span class="lineno"> 164</span> <span class="keywordflow">if</span> (use_noise_map)</div>
<div class="line"><a id="l00165" name="l00165"></a><span class="lineno"> 165</span> threshold_ = 5 * noiseMap(i, j);</div>
<div class="line"><a id="l00166" name="l00166"></a><span class="lineno"> 166</span> <span class="keywordflow">if</span> (original_(i, j) &gt; threshold_) {</div>
<div class="line"><a id="l00167" name="l00167"></a><span class="lineno"> 167</span> <span class="comment">// printf(&quot;========== Cluster index: %d\n&quot;, clusterIndex);</span></div>
<div class="line"><a id="l00168" name="l00168"></a><span class="lineno"> 168</span> rec_FillHit(clusterIndex, i, j);</div>
<div class="line"><a id="l00169" name="l00169"></a><span class="lineno"> 169</span> clusterIndex++;</div>
<div class="line"><a id="l00170" name="l00170"></a><span class="lineno"> 170</span> }</div>
<div class="line"><a id="l00171" name="l00171"></a><span class="lineno"> 171</span> }</div>
<div class="line"><a id="l00172" name="l00172"></a><span class="lineno"> 172</span> }</div>
<div class="line"><a id="l00173" name="l00173"></a><span class="lineno"> 173</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span> &amp;h : h_size)</div>
<div class="line"><a id="l00174" name="l00174"></a><span class="lineno"> 174</span> hits.push_back(h.second);</div>
<div class="line"><a id="l00175" name="l00175"></a><span class="lineno"> 175</span> h_size.clear();</div>
<div class="line"><a id="l00176" name="l00176"></a><span class="lineno"> 176</span>}</div>
<div class="line"><a id="l00177" name="l00177"></a><span class="lineno"> 177</span> </div>
<div class="line"><a id="l00178" name="l00178"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a64540f74ba953ae2ba2efab9f06e9fc5"> 178</a></span><span class="keyword">template</span> &lt;<span class="keyword">typename</span> T&gt; <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a64540f74ba953ae2ba2efab9f06e9fc5">ClusterFinder&lt;T&gt;::rec_FillHit</a>(<span class="keywordtype">int</span> clusterIndex, <span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j) {</div>
<div class="line"><a id="l00179" name="l00179"></a><span class="lineno"> 179</span> <span class="comment">// printf(&quot;original_(%d, %d)=%f\n&quot;, i, j, original_(i,j));</span></div>
<div class="line"><a id="l00180" name="l00180"></a><span class="lineno"> 180</span> <span class="comment">// printf(&quot;h_size[%d].size=%d\n&quot;, clusterIndex, h_size[clusterIndex].size);</span></div>
<div class="line"><a id="l00181" name="l00181"></a><span class="lineno"> 181</span> <span class="keywordflow">if</span> (h_size[clusterIndex].size &lt; <a class="code hl_variable" href="VariableSizeClusterFinder_8hpp.html#af7298d7428936e9c8ecb92df87bd621c">MAX_CLUSTER_SIZE</a>) {</div>
<div class="line"><a id="l00182" name="l00182"></a><span class="lineno"> 182</span> h_size[clusterIndex].rows[h_size[clusterIndex].size] = i;</div>
<div class="line"><a id="l00183" name="l00183"></a><span class="lineno"> 183</span> h_size[clusterIndex].cols[h_size[clusterIndex].size] = j;</div>
<div class="line"><a id="l00184" name="l00184"></a><span class="lineno"> 184</span> h_size[clusterIndex].enes[h_size[clusterIndex].size] = original_(i, j);</div>
<div class="line"><a id="l00185" name="l00185"></a><span class="lineno"> 185</span> }</div>
<div class="line"><a id="l00186" name="l00186"></a><span class="lineno"> 186</span> h_size[clusterIndex].size += 1;</div>
<div class="line"><a id="l00187" name="l00187"></a><span class="lineno"> 187</span> h_size[clusterIndex].energy += original_(i, j);</div>
<div class="line"><a id="l00188" name="l00188"></a><span class="lineno"> 188</span> <span class="keywordflow">if</span> (h_size[clusterIndex].max &lt; original_(i, j)) {</div>
<div class="line"><a id="l00189" name="l00189"></a><span class="lineno"> 189</span> h_size[clusterIndex].row = i;</div>
<div class="line"><a id="l00190" name="l00190"></a><span class="lineno"> 190</span> h_size[clusterIndex].col = j;</div>
<div class="line"><a id="l00191" name="l00191"></a><span class="lineno"> 191</span> h_size[clusterIndex].max = original_(i, j);</div>
<div class="line"><a id="l00192" name="l00192"></a><span class="lineno"> 192</span> }</div>
<div class="line"><a id="l00193" name="l00193"></a><span class="lineno"> 193</span> original_(i, j) = 0;</div>
<div class="line"><a id="l00194" name="l00194"></a><span class="lineno"> 194</span> </div>
<div class="line"><a id="l00195" name="l00195"></a><span class="lineno"> 195</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> k = 0; k &lt; 8; ++k) { <span class="comment">// 8 for 8-neighbour</span></div>
<div class="line"><a id="l00196" name="l00196"></a><span class="lineno"> 196</span> <span class="keyword">const</span> <span class="keyword">auto</span> row = i + di_[k];</div>
<div class="line"><a id="l00197" name="l00197"></a><span class="lineno"> 197</span> <span class="keyword">const</span> <span class="keyword">auto</span> col = j + dj_[k];</div>
<div class="line"><a id="l00198" name="l00198"></a><span class="lineno"> 198</span> <span class="keywordflow">if</span> (row &gt;= 0 &amp;&amp; col &gt;= 0 &amp;&amp; row &lt; shape_[0] &amp;&amp; col &lt; shape_[1]) {</div>
<div class="line"><a id="l00199" name="l00199"></a><span class="lineno"> 199</span> <span class="keywordflow">if</span> (use_noise_map)</div>
<div class="line"><a id="l00200" name="l00200"></a><span class="lineno"> 200</span> threshold_ = peripheralThresholdFactor_ * noiseMap(row, col);</div>
<div class="line"><a id="l00201" name="l00201"></a><span class="lineno"> 201</span> <span class="keywordflow">if</span> (original_(row, col) &gt; threshold_) {</div>
<div class="line"><a id="l00202" name="l00202"></a><span class="lineno"> 202</span> rec_FillHit(clusterIndex, row, col);</div>
<div class="line"><a id="l00203" name="l00203"></a><span class="lineno"> 203</span> } <span class="keywordflow">else</span> {</div>
<div class="line"><a id="l00204" name="l00204"></a><span class="lineno"> 204</span> <span class="comment">// if (h_size[clusterIndex].size &lt; MAX_CLUSTER_SIZE){</span></div>
<div class="line"><a id="l00205" name="l00205"></a><span class="lineno"> 205</span> <span class="comment">// h_size[clusterIndex].size += 1;</span></div>
<div class="line"><a id="l00206" name="l00206"></a><span class="lineno"> 206</span> <span class="comment">// h_size[clusterIndex].rows[h_size[clusterIndex].size] = row;</span></div>
<div class="line"><a id="l00207" name="l00207"></a><span class="lineno"> 207</span> <span class="comment">// h_size[clusterIndex].cols[h_size[clusterIndex].size] = col;</span></div>
<div class="line"><a id="l00208" name="l00208"></a><span class="lineno"> 208</span> <span class="comment">// h_size[clusterIndex].enes[h_size[clusterIndex].size] = original_(row, col);</span></div>
<div class="line"><a id="l00209" name="l00209"></a><span class="lineno"> 209</span> <span class="comment">// }// ? weather to include peripheral pixels</span></div>
<div class="line"><a id="l00210" name="l00210"></a><span class="lineno"> 210</span> original_(row, col) = 0; <span class="comment">// remove peripheral pixels, to avoid potential influence for pedestal updating</span></div>
<div class="line"><a id="l00211" name="l00211"></a><span class="lineno"> 211</span> }</div>
<div class="line"><a id="l00212" name="l00212"></a><span class="lineno"> 212</span> }</div>
<div class="line"><a id="l00213" name="l00213"></a><span class="lineno"> 213</span> }</div>
<div class="line"><a id="l00214" name="l00214"></a><span class="lineno"> 214</span>}</div>
<div class="line"><a id="l00215" name="l00215"></a><span class="lineno"> 215</span> </div>
<div class="line"><a id="l00216" name="l00216"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#ab25d54418b721d429f6141da73cc2a41"> 216</a></span><span class="keyword">template</span> &lt;<span class="keyword">typename</span> T&gt; <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#ab25d54418b721d429f6141da73cc2a41">ClusterFinder&lt;T&gt;::single_pass</a>(<a class="code hl_class" href="classaare_1_1NDView.html">NDView&lt;T, 2&gt;</a> img) {</div>
<div class="line"><a id="l00217" name="l00217"></a><span class="lineno"> 217</span> original_ = img;</div>
<div class="line"><a id="l00218" name="l00218"></a><span class="lineno"> 218</span> labeled_ = 0;</div>
<div class="line"><a id="l00219" name="l00219"></a><span class="lineno"> 219</span> current_label = 0;</div>
<div class="line"><a id="l00220" name="l00220"></a><span class="lineno"> 220</span> child.clear();</div>
<div class="line"><a id="l00221" name="l00221"></a><span class="lineno"> 221</span> first_pass();</div>
<div class="line"><a id="l00222" name="l00222"></a><span class="lineno"> 222</span> <span class="comment">// print_connections();</span></div>
<div class="line"><a id="l00223" name="l00223"></a><span class="lineno"> 223</span> <span class="comment">// second_pass();</span></div>
<div class="line"><a id="l00224" name="l00224"></a><span class="lineno"> 224</span> <span class="comment">// store_clusters();</span></div>
<div class="line"><a id="l00225" name="l00225"></a><span class="lineno"> 225</span>}</div>
<div class="line"><a id="l00226" name="l00226"></a><span class="lineno"> 226</span> </div>
<div class="line"><a id="l00227" name="l00227"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a7993fb06ee06a24ede5a4ddd94f8a987"> 227</a></span><span class="keyword">template</span> &lt;<span class="keyword">typename</span> T&gt; <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a7993fb06ee06a24ede5a4ddd94f8a987">ClusterFinder&lt;T&gt;::first_pass</a>() {</div>
<div class="line"><a id="l00228" name="l00228"></a><span class="lineno"> 228</span> </div>
<div class="line"><a id="l00229" name="l00229"></a><span class="lineno"> 229</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; original_.size(); ++i) {</div>
<div class="line"><a id="l00230" name="l00230"></a><span class="lineno"> 230</span> <span class="keywordflow">if</span> (use_noise_map)</div>
<div class="line"><a id="l00231" name="l00231"></a><span class="lineno"> 231</span> threshold_ = 5 * noiseMap(i);</div>
<div class="line"><a id="l00232" name="l00232"></a><span class="lineno"> 232</span> binary_(i) = (original_(i) &gt; threshold_);</div>
<div class="line"><a id="l00233" name="l00233"></a><span class="lineno"> 233</span> }</div>
<div class="line"><a id="l00234" name="l00234"></a><span class="lineno"> 234</span> </div>
<div class="line"><a id="l00235" name="l00235"></a><span class="lineno"> 235</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; shape_[0]; ++i) {</div>
<div class="line"><a id="l00236" name="l00236"></a><span class="lineno"> 236</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> j = 0; j &lt; shape_[1]; ++j) {</div>
<div class="line"><a id="l00237" name="l00237"></a><span class="lineno"> 237</span> </div>
<div class="line"><a id="l00238" name="l00238"></a><span class="lineno"> 238</span> <span class="comment">// do we have someting to process?</span></div>
<div class="line"><a id="l00239" name="l00239"></a><span class="lineno"> 239</span> <span class="keywordflow">if</span> (binary_(i, j)) {</div>
<div class="line"><a id="l00240" name="l00240"></a><span class="lineno"> 240</span> <span class="keyword">auto</span> tmp = check_neighbours(i, j);</div>
<div class="line"><a id="l00241" name="l00241"></a><span class="lineno"> 241</span> <span class="keywordflow">if</span> (tmp != 0) {</div>
<div class="line"><a id="l00242" name="l00242"></a><span class="lineno"> 242</span> labeled_(i, j) = tmp;</div>
<div class="line"><a id="l00243" name="l00243"></a><span class="lineno"> 243</span> } <span class="keywordflow">else</span> {</div>
<div class="line"><a id="l00244" name="l00244"></a><span class="lineno"> 244</span> labeled_(i, j) = ++current_label;</div>
<div class="line"><a id="l00245" name="l00245"></a><span class="lineno"> 245</span> }</div>
<div class="line"><a id="l00246" name="l00246"></a><span class="lineno"> 246</span> }</div>
<div class="line"><a id="l00247" name="l00247"></a><span class="lineno"> 247</span> }</div>
<div class="line"><a id="l00248" name="l00248"></a><span class="lineno"> 248</span> }</div>
<div class="line"><a id="l00249" name="l00249"></a><span class="lineno"> 249</span>}</div>
<div class="line"><a id="l00250" name="l00250"></a><span class="lineno"> 250</span> </div>
<div class="line"><a id="l00251" name="l00251"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a6630ba010b0d0b6b4cd8aefe98a1bd9e"> 251</a></span><span class="keyword">template</span> &lt;<span class="keyword">typename</span> T&gt; <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a6630ba010b0d0b6b4cd8aefe98a1bd9e">ClusterFinder&lt;T&gt;::second_pass</a>() {</div>
<div class="line"><a id="l00252" name="l00252"></a><span class="lineno"> 252</span> </div>
<div class="line"><a id="l00253" name="l00253"></a><span class="lineno"> 253</span> <span class="keywordflow">for</span> (ssize_t i = 0; i != labeled_.size(); ++i) {</div>
<div class="line"><a id="l00254" name="l00254"></a><span class="lineno"> 254</span> <span class="keyword">auto</span> current_label = labeled_(i);</div>
<div class="line"><a id="l00255" name="l00255"></a><span class="lineno"> 255</span> <span class="keywordflow">if</span> (current_label != 0) {</div>
<div class="line"><a id="l00256" name="l00256"></a><span class="lineno"> 256</span> <span class="keyword">auto</span> it = child.find(current_label);</div>
<div class="line"><a id="l00257" name="l00257"></a><span class="lineno"> 257</span> <span class="keywordflow">while</span> (it != child.end()) {</div>
<div class="line"><a id="l00258" name="l00258"></a><span class="lineno"> 258</span> current_label = it-&gt;second;</div>
<div class="line"><a id="l00259" name="l00259"></a><span class="lineno"> 259</span> it = child.find(current_label);</div>
<div class="line"><a id="l00260" name="l00260"></a><span class="lineno"> 260</span> <span class="comment">// do this once before doing the second pass?</span></div>
<div class="line"><a id="l00261" name="l00261"></a><span class="lineno"> 261</span> <span class="comment">// all values point to the final one...</span></div>
<div class="line"><a id="l00262" name="l00262"></a><span class="lineno"> 262</span> }</div>
<div class="line"><a id="l00263" name="l00263"></a><span class="lineno"> 263</span> labeled_(i) = current_label;</div>
<div class="line"><a id="l00264" name="l00264"></a><span class="lineno"> 264</span> }</div>
<div class="line"><a id="l00265" name="l00265"></a><span class="lineno"> 265</span> }</div>
<div class="line"><a id="l00266" name="l00266"></a><span class="lineno"> 266</span>}</div>
<div class="line"><a id="l00267" name="l00267"></a><span class="lineno"> 267</span> </div>
<div class="line"><a id="l00268" name="l00268"></a><span class="lineno"><a class="line" href="classaare_1_1ClusterFinder.html#a053a2b1729301c1bda8b78a8187112b6"> 268</a></span><span class="keyword">template</span> &lt;<span class="keyword">typename</span> T&gt; <span class="keywordtype">void</span> <a class="code hl_function" href="classaare_1_1ClusterFinder.html#a053a2b1729301c1bda8b78a8187112b6">ClusterFinder&lt;T&gt;::store_clusters</a>() {</div>
<div class="line"><a id="l00269" name="l00269"></a><span class="lineno"> 269</span> </div>
<div class="line"><a id="l00270" name="l00270"></a><span class="lineno"> 270</span> <span class="comment">// Accumulate hit information in a map</span></div>
<div class="line"><a id="l00271" name="l00271"></a><span class="lineno"> 271</span> <span class="comment">// Do we always have monotonic increasing</span></div>
<div class="line"><a id="l00272" name="l00272"></a><span class="lineno"> 272</span> <span class="comment">// labels? Then vector?</span></div>
<div class="line"><a id="l00273" name="l00273"></a><span class="lineno"> 273</span> <span class="comment">// here the translation is label -&gt; Hit</span></div>
<div class="line"><a id="l00274" name="l00274"></a><span class="lineno"> 274</span> std::unordered_map&lt;int, Hit&gt; h_size;</div>
<div class="line"><a id="l00275" name="l00275"></a><span class="lineno"> 275</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> i = 0; i &lt; shape_[0]; ++i) {</div>
<div class="line"><a id="l00276" name="l00276"></a><span class="lineno"> 276</span> <span class="keywordflow">for</span> (<span class="keywordtype">int</span> j = 0; j &lt; shape_[1]; ++j) {</div>
<div class="line"><a id="l00277" name="l00277"></a><span class="lineno"> 277</span> <span class="keywordflow">if</span> (labeled_(i, j) != 0 or <span class="keyword">false</span></div>
<div class="line"><a id="l00278" name="l00278"></a><span class="lineno"> 278</span> <span class="comment">// (i-1 &gt;= 0 and labeled_(i-1, j) != 0) or // another circle of peripheral pixels</span></div>
<div class="line"><a id="l00279" name="l00279"></a><span class="lineno"> 279</span> <span class="comment">// (j-1 &gt;= 0 and labeled_(i, j-1) != 0) or</span></div>
<div class="line"><a id="l00280" name="l00280"></a><span class="lineno"> 280</span> <span class="comment">// (i+1 &lt; shape_[0] and labeled_(i+1, j) != 0) or</span></div>
<div class="line"><a id="l00281" name="l00281"></a><span class="lineno"> 281</span> <span class="comment">// (j+1 &lt; shape_[1] and labeled_(i, j+1) != 0)</span></div>
<div class="line"><a id="l00282" name="l00282"></a><span class="lineno"> 282</span> ) {</div>
<div class="line"><a id="l00283" name="l00283"></a><span class="lineno"> 283</span> <a class="code hl_struct" href="structaare_1_1ClusterFinder_1_1Hit.html">Hit</a> &amp;record = h_size[labeled_(i, j)];</div>
<div class="line"><a id="l00284" name="l00284"></a><span class="lineno"> 284</span> <span class="keywordflow">if</span> (record.<a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a467c1a642f4f886142031a9cdedf8974">size</a> &lt; <a class="code hl_variable" href="VariableSizeClusterFinder_8hpp.html#af7298d7428936e9c8ecb92df87bd621c">MAX_CLUSTER_SIZE</a>) {</div>
<div class="line"><a id="l00285" name="l00285"></a><span class="lineno"> 285</span> record.<a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a284bcfb7b46f098ec297533aff39991e">rows</a>[record.<a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a467c1a642f4f886142031a9cdedf8974">size</a>] = i;</div>
<div class="line"><a id="l00286" name="l00286"></a><span class="lineno"> 286</span> record.<a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a567f82696f8b38154602c389ae551306">cols</a>[record.<a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a467c1a642f4f886142031a9cdedf8974">size</a>] = j;</div>
<div class="line"><a id="l00287" name="l00287"></a><span class="lineno"> 287</span> record.<a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a6c31a388fb5bcc77aed32dd5fa5fcb08">enes</a>[record.<a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a467c1a642f4f886142031a9cdedf8974">size</a>] = original_(i, j);</div>
<div class="line"><a id="l00288" name="l00288"></a><span class="lineno"> 288</span> } <span class="keywordflow">else</span> {</div>
<div class="line"><a id="l00289" name="l00289"></a><span class="lineno"> 289</span> <span class="keywordflow">continue</span>;</div>
<div class="line"><a id="l00290" name="l00290"></a><span class="lineno"> 290</span> }</div>
<div class="line"><a id="l00291" name="l00291"></a><span class="lineno"> 291</span> record.<a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a467c1a642f4f886142031a9cdedf8974">size</a> += 1;</div>
<div class="line"><a id="l00292" name="l00292"></a><span class="lineno"> 292</span> record.<a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#aefdfa834b42bdedc95f872267e9ef08a">energy</a> += original_(i, j);</div>
<div class="line"><a id="l00293" name="l00293"></a><span class="lineno"> 293</span> </div>
<div class="line"><a id="l00294" name="l00294"></a><span class="lineno"> 294</span> <span class="keywordflow">if</span> (record.<a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a92ff57e741cf640d00dce1976616837a">max</a> &lt; original_(i, j)) {</div>
<div class="line"><a id="l00295" name="l00295"></a><span class="lineno"> 295</span> record.<a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a62e5ba47c8626344a6816906cb440b30">row</a> = i;</div>
<div class="line"><a id="l00296" name="l00296"></a><span class="lineno"> 296</span> record.<a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#afcae3086d96e4761ab437d227a12e872">col</a> = j;</div>
<div class="line"><a id="l00297" name="l00297"></a><span class="lineno"> 297</span> record.<a class="code hl_variable" href="structaare_1_1ClusterFinder_1_1Hit.html#a92ff57e741cf640d00dce1976616837a">max</a> = original_(i, j);</div>
<div class="line"><a id="l00298" name="l00298"></a><span class="lineno"> 298</span> }</div>
<div class="line"><a id="l00299" name="l00299"></a><span class="lineno"> 299</span> }</div>
<div class="line"><a id="l00300" name="l00300"></a><span class="lineno"> 300</span> }</div>
<div class="line"><a id="l00301" name="l00301"></a><span class="lineno"> 301</span> }</div>
<div class="line"><a id="l00302" name="l00302"></a><span class="lineno"> 302</span> </div>
<div class="line"><a id="l00303" name="l00303"></a><span class="lineno"> 303</span> <span class="keywordflow">for</span> (<span class="keyword">const</span> <span class="keyword">auto</span> &amp;h : h_size)</div>
<div class="line"><a id="l00304" name="l00304"></a><span class="lineno"> 304</span> hits.push_back(h.second);</div>
<div class="line"><a id="l00305" name="l00305"></a><span class="lineno"> 305</span>}</div>
<div class="line"><a id="l00306" name="l00306"></a><span class="lineno"> 306</span> </div>
<div class="line"><a id="l00307" name="l00307"></a><span class="lineno"> 307</span>} <span class="comment">// namespace aare</span></div>
<div class="ttc" id="aNDArray_8hpp_html"><div class="ttname"><a href="NDArray_8hpp.html">NDArray.hpp</a></div></div>
<div class="ttc" id="aVariableSizeClusterFinder_8hpp_html_af7298d7428936e9c8ecb92df87bd621c"><div class="ttname"><a href="VariableSizeClusterFinder_8hpp.html#af7298d7428936e9c8ecb92df87bd621c">MAX_CLUSTER_SIZE</a></div><div class="ttdeci">const int MAX_CLUSTER_SIZE</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:10</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html"><div class="ttname"><a href="classaare_1_1ClusterFinder.html">aare::ClusterFinder</a></div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:13</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a053a2b1729301c1bda8b78a8187112b6"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a053a2b1729301c1bda8b78a8187112b6">aare::ClusterFinder::store_clusters</a></div><div class="ttdeci">void store_clusters()</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:268</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a0a507adf23a53c14e823c8721c8139dc"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a0a507adf23a53c14e823c8721c8139dc">aare::ClusterFinder::labeled_</a></div><div class="ttdeci">NDArray&lt; int, 2 &gt; labeled_</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:33</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a1a31f9419dd90e3136bf1c59e53fbad7"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a1a31f9419dd90e3136bf1c59e53fbad7">aare::ClusterFinder::add_link</a></div><div class="ttdeci">void add_link(int from, int to)</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:91</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a2726725360133a70fce11b8072cf2a93"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a2726725360133a70fce11b8072cf2a93">aare::ClusterFinder::threshold_</a></div><div class="ttdeci">T threshold_</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:36</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a301516e99319ee02ecf4c44f8310ce16"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a301516e99319ee02ecf4c44f8310ce16">aare::ClusterFinder::total_clusters</a></div><div class="ttdeci">size_t total_clusters() const</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:85</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a3d8448ccd2478a52075a4b7d5e090b2f"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a3d8448ccd2478a52075a4b7d5e090b2f">aare::ClusterFinder::set_peripheralThresholdFactor</a></div><div class="ttdeci">void set_peripheralThresholdFactor(int factor)</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:63</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a405e7f0d0eabc9a93099763f4eaa8fbc"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a405e7f0d0eabc9a93099763f4eaa8fbc">aare::ClusterFinder::clear_hits</a></div><div class="ttdeci">void clear_hits()</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:77</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a4695c04a848715d073455b76241119b4"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a4695c04a848715d073455b76241119b4">aare::ClusterFinder::steal_hits</a></div><div class="ttdeci">std::vector&lt; Hit &gt; steal_hits()</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:72</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a64540f74ba953ae2ba2efab9f06e9fc5"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a64540f74ba953ae2ba2efab9f06e9fc5">aare::ClusterFinder::rec_FillHit</a></div><div class="ttdeci">void rec_FillHit(int clusterIndex, int i, int j)</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:178</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a6630ba010b0d0b6b4cd8aefe98a1bd9e"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a6630ba010b0d0b6b4cd8aefe98a1bd9e">aare::ClusterFinder::second_pass</a></div><div class="ttdeci">void second_pass()</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:251</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a69ffad49f0d31fdf9993774d219f87e8"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a69ffad49f0d31fdf9993774d219f87e8">aare::ClusterFinder::di</a></div><div class="ttdeci">const std::array&lt; int, 4 &gt; di</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:41</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a7575c70f662ffa316882eec6f2b865e7"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a7575c70f662ffa316882eec6f2b865e7">aare::ClusterFinder::dj</a></div><div class="ttdeci">const std::array&lt; int, 4 &gt; dj</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:42</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a77a7f9093806a6b66596262c726aedff"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a77a7f9093806a6b66596262c726aedff">aare::ClusterFinder::original_</a></div><div class="ttdeci">NDView&lt; T, 2 &gt; original_</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:32</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a7993fb06ee06a24ede5a4ddd94f8a987"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a7993fb06ee06a24ede5a4ddd94f8a987">aare::ClusterFinder::first_pass</a></div><div class="ttdeci">void first_pass()</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:227</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a8044d4bdabc6ed090f07bfddc362f2eb"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a8044d4bdabc6ed090f07bfddc362f2eb">aare::ClusterFinder::noiseMap</a></div><div class="ttdeci">NDView&lt; T, 2 &gt; noiseMap</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:37</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a86342541978eac118b16eefa026930d4"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a86342541978eac118b16eefa026930d4">aare::ClusterFinder::peripheral_labeled_</a></div><div class="ttdeci">NDArray&lt; int, 2 &gt; peripheral_labeled_</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:34</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a87ae02ed18b8d51cf34d6dcc4a0a11b1"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a87ae02ed18b8d51cf34d6dcc4a0a11b1">aare::ClusterFinder::shape_</a></div><div class="ttdeci">const std::array&lt; ssize_t, 2 &gt; shape_</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:31</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a8df807dc085267ece8c8329d546c1560"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a8df807dc085267ece8c8329d546c1560">aare::ClusterFinder::labeled</a></div><div class="ttdeci">NDArray&lt; int, 2 &gt; labeled()</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:57</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a91e708f8f94adfb3af7e5d9c3a748bb3"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a91e708f8f94adfb3af7e5d9c3a748bb3">aare::ClusterFinder::current_label</a></div><div class="ttdeci">int current_label</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:40</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a95c3c74dcd2812659c4664f8896dcc6e"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a95c3c74dcd2812659c4664f8896dcc6e">aare::ClusterFinder::ClusterFinder</a></div><div class="ttdeci">ClusterFinder(image_shape shape, T threshold)</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:52</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_a9809de5007aeb2095b5ec74f68b6a7d8"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#a9809de5007aeb2095b5ec74f68b6a7d8">aare::ClusterFinder::dj_</a></div><div class="ttdeci">const std::array&lt; int, 8 &gt; dj_</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:44</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_ab25d54418b721d429f6141da73cc2a41"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#ab25d54418b721d429f6141da73cc2a41">aare::ClusterFinder::single_pass</a></div><div class="ttdeci">void single_pass(NDView&lt; T, 2 &gt; img)</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:216</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_ab880d2c07964ee558a85daed3b3ec181"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#ab880d2c07964ee558a85daed3b3ec181">aare::ClusterFinder::find_clusters</a></div><div class="ttdeci">void find_clusters(NDView&lt; T, 2 &gt; img)</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:147</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_ac228fbe6a24d8b2179db87aa0cfecc86"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#ac228fbe6a24d8b2179db87aa0cfecc86">aare::ClusterFinder::hits</a></div><div class="ttdeci">std::vector&lt; Hit &gt; hits</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:47</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_ac6372eadf0bff57bd560bd07cd59da96"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#ac6372eadf0bff57bd560bd07cd59da96">aare::ClusterFinder::check_neighbours</a></div><div class="ttdeci">int check_neighbours(int i, int j)</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:115</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_aca8f21925565b4f3dbf4677d2ca6ba64"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#aca8f21925565b4f3dbf4677d2ca6ba64">aare::ClusterFinder::binary_</a></div><div class="ttdeci">NDArray&lt; bool, 2 &gt; binary_</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:35</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_acd1fc878a5043e0adc8f085d1edf3ba6"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#acd1fc878a5043e0adc8f085d1edf3ba6">aare::ClusterFinder::set_noiseMap</a></div><div class="ttdeci">void set_noiseMap(NDView&lt; T, 2 &gt; noise_map)</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:59</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_ad4b7557ac7b34a7fd188564e22d634ec"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#ad4b7557ac7b34a7fd188564e22d634ec">aare::ClusterFinder::h_size</a></div><div class="ttdeci">std::unordered_map&lt; int, Hit &gt; h_size</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:46</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_ae7622ae945b849df6bad3d2cc0347370"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#ae7622ae945b849df6bad3d2cc0347370">aare::ClusterFinder::use_noise_map</a></div><div class="ttdeci">bool use_noise_map</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:38</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_aed823a8611547fb93d6accacdd61b55c"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#aed823a8611547fb93d6accacdd61b55c">aare::ClusterFinder::print_connections</a></div><div class="ttdeci">void print_connections()</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:79</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_aeeec655301ed05e4c5ee9201e828b7f0"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#aeeec655301ed05e4c5ee9201e828b7f0">aare::ClusterFinder::child</a></div><div class="ttdeci">std::map&lt; int, int &gt; child</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:45</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_af33f83aeeb4187f826919270b8b38391"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#af33f83aeeb4187f826919270b8b38391">aare::ClusterFinder::find_clusters_X</a></div><div class="ttdeci">void find_clusters_X(NDView&lt; T, 2 &gt; img)</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:159</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_af933139fed8103cab83572a6ba449f36"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#af933139fed8103cab83572a6ba449f36">aare::ClusterFinder::peripheralThresholdFactor_</a></div><div class="ttdeci">int peripheralThresholdFactor_</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:39</div></div>
<div class="ttc" id="aclassaare_1_1ClusterFinder_html_af97013b5f3fff727149b4e09c9d485a3"><div class="ttname"><a href="classaare_1_1ClusterFinder.html#af97013b5f3fff727149b4e09c9d485a3">aare::ClusterFinder::di_</a></div><div class="ttdeci">const std::array&lt; int, 8 &gt; di_</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:43</div></div>
<div class="ttc" id="aclassaare_1_1NDArray_html"><div class="ttname"><a href="classaare_1_1NDArray.html">aare::NDArray</a></div><div class="ttdef"><b>Definition</b> NDArray.hpp:23</div></div>
<div class="ttc" id="aclassaare_1_1NDView_html"><div class="ttname"><a href="classaare_1_1NDView.html">aare::NDView</a></div><div class="ttdef"><b>Definition</b> NDView.hpp:46</div></div>
<div class="ttc" id="anamespaceaare_html"><div class="ttname"><a href="namespaceaare.html">aare</a></div><div class="ttdoc">Frame class to represent a single frame of data model class should be able to work with streams comin...</div><div class="ttdef"><b>Definition</b> CircularFifo.hpp:11</div></div>
<div class="ttc" id="astructaare_1_1ClusterFinder_1_1Hit_html"><div class="ttname"><a href="structaare_1_1ClusterFinder_1_1Hit.html">aare::ClusterFinder::Hit</a></div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:15</div></div>
<div class="ttc" id="astructaare_1_1ClusterFinder_1_1Hit_html_a284bcfb7b46f098ec297533aff39991e"><div class="ttname"><a href="structaare_1_1ClusterFinder_1_1Hit.html#a284bcfb7b46f098ec297533aff39991e">aare::ClusterFinder::Hit::rows</a></div><div class="ttdeci">int16_t rows[MAX_CLUSTER_SIZE]</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:25</div></div>
<div class="ttc" id="astructaare_1_1ClusterFinder_1_1Hit_html_a3f2ca05a76fa614ab5cfc70c0197093c"><div class="ttname"><a href="structaare_1_1ClusterFinder_1_1Hit.html#a3f2ca05a76fa614ab5cfc70c0197093c">aare::ClusterFinder::Hit::reserved</a></div><div class="ttdeci">uint16_t reserved</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:19</div></div>
<div class="ttc" id="astructaare_1_1ClusterFinder_1_1Hit_html_a467c1a642f4f886142031a9cdedf8974"><div class="ttname"><a href="structaare_1_1ClusterFinder_1_1Hit.html#a467c1a642f4f886142031a9cdedf8974">aare::ClusterFinder::Hit::size</a></div><div class="ttdeci">int16_t size</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:16</div></div>
<div class="ttc" id="astructaare_1_1ClusterFinder_1_1Hit_html_a567f82696f8b38154602c389ae551306"><div class="ttname"><a href="structaare_1_1ClusterFinder_1_1Hit.html#a567f82696f8b38154602c389ae551306">aare::ClusterFinder::Hit::cols</a></div><div class="ttdeci">int16_t cols[MAX_CLUSTER_SIZE]</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:26</div></div>
<div class="ttc" id="astructaare_1_1ClusterFinder_1_1Hit_html_a62e5ba47c8626344a6816906cb440b30"><div class="ttname"><a href="structaare_1_1ClusterFinder_1_1Hit.html#a62e5ba47c8626344a6816906cb440b30">aare::ClusterFinder::Hit::row</a></div><div class="ttdeci">int16_t row</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:17</div></div>
<div class="ttc" id="astructaare_1_1ClusterFinder_1_1Hit_html_a6c31a388fb5bcc77aed32dd5fa5fcb08"><div class="ttname"><a href="structaare_1_1ClusterFinder_1_1Hit.html#a6c31a388fb5bcc77aed32dd5fa5fcb08">aare::ClusterFinder::Hit::enes</a></div><div class="ttdeci">double enes[MAX_CLUSTER_SIZE]</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:27</div></div>
<div class="ttc" id="astructaare_1_1ClusterFinder_1_1Hit_html_a92ff57e741cf640d00dce1976616837a"><div class="ttname"><a href="structaare_1_1ClusterFinder_1_1Hit.html#a92ff57e741cf640d00dce1976616837a">aare::ClusterFinder::Hit::max</a></div><div class="ttdeci">T max</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:21</div></div>
<div class="ttc" id="astructaare_1_1ClusterFinder_1_1Hit_html_aefdfa834b42bdedc95f872267e9ef08a"><div class="ttname"><a href="structaare_1_1ClusterFinder_1_1Hit.html#aefdfa834b42bdedc95f872267e9ef08a">aare::ClusterFinder::Hit::energy</a></div><div class="ttdeci">T energy</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:20</div></div>
<div class="ttc" id="astructaare_1_1ClusterFinder_1_1Hit_html_afcae3086d96e4761ab437d227a12e872"><div class="ttname"><a href="structaare_1_1ClusterFinder_1_1Hit.html#afcae3086d96e4761ab437d227a12e872">aare::ClusterFinder::Hit::col</a></div><div class="ttdeci">int16_t col</div><div class="ttdef"><b>Definition</b> VariableSizeClusterFinder.hpp:18</div></div>
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