138 Commits

Author	SHA1	Message	Date
mazzol_a	9f8eee5d08	fixed python bindings - only read headers of modules that are in the roi	2025-06-16 11:07:00 +02:00
mazzol_a	35114cde9d	fatal error did not open any subfiles	2025-06-13 18:12:47 +02:00
mazzol_a	b13f864b2b	need n_modules	2025-06-13 17:01:13 +02:00
mazzol_a	0f56846e3d	deleted some commented lines	2025-06-13 16:33:25 +02:00
mazzol_a	be67bbab6b	extended DetectorGeometry class with find_geometry, update_geometry (refactoring)	2025-06-13 16:16:23 +02:00
mazzol_a	bd7870e75a	review comments	2025-06-12 18:14:48 +02:00
mazzol_a	75f63607fc	friend_test macro	2025-06-12 17:46:10 +02:00
mazzol_a	cfe7c31fe4	changed data path of test data	2025-06-12 09:53:15 +02:00
mazzol_a	19ecc82fff	solved merge conflict	2025-06-10 17:01:40 +02:00
mazzol_a	f9751902a2	formatted main branch	2025-06-10 16:09:06 +02:00
mazzol_a	ad7525cd02	considered num_udp_interafces for jungfrau and quad structure for eiger	2025-06-10 11:35:15 +02:00
mazzol_a	87d8682b1e	added test cases	2025-06-06 11:31:39 +02:00
mazzol_a	9c6e629298	only files within the ROI are opened & geometry always read in RawMasterFile	2025-06-04 16:34:40 +02:00
Erik Fröjdh	94ac58b09e	For 2025.5.22 release (#181) ... Co-authored-by: Patrick <patrick.sieberer@psi.ch> Co-authored-by: JulianHeymes <julian.heymes@psi.ch> Co-authored-by: Dhanya Thattil <dhanya.thattil@psi.ch> Co-authored-by: Xiangyu Xie <45243914+xiangyuxie@users.noreply.github.com> Co-authored-by: xiangyu.xie <xiangyu.xie@psi.ch> Co-authored-by: AliceMazzoleni99 <alice.mazzoleni@psi.ch> Co-authored-by: Mazzoleni Alice Francesca <mazzol_a@pc17378.psi.ch> Co-authored-by: siebsi <sieb.patr@gmail.com>	2025-05-22 11:40:39 +02:00
froejdh_e	9ecf4f4b44	merge	2025-05-22 11:23:57 +02:00
Erik Fröjdh	9e1b8731b0	RawSubFile support multi file access (#173) ... This PR is a fix/improvement to a problem that Jonathan had. (#156) The original implementation opened all subfiles at once witch works for normal sized datasets but fails at a certain point (thousands of files). - This solution uses RawSubFile to manage the different file indicies and only opens the file we need - Added logger.h from slsDetectorPackage for debug printing (in production no messages should be visible)	2025-05-22 11:00:03 +02:00
Erik Fröjdh	a6eebbe9bd	removed extra const on return type, added cast (#177) ... Fixed warnings on apple clang: - removed extra const on return type - added cast to suppress a float to double conversion warning	2025-05-20 15:27:38 +02:00
Erik Fröjdh	81588fba3b	linking to threads and removed extra ; (#176) ... - Fixing broken build of tests on RH8 by linking pthreads - Removed extra ; causing warnings with -Wpedantic	2025-05-06 17:18:54 +02:00
Erik Fröjdh	cf158e2dcd	Added scurve fitting (#168) ... - added scurve fitting with two different signs (scurve, scurve2) - at the moment no option to set initial parameters --------- Co-authored-by: JulianHeymes <julian.heymes@psi.ch>	2025-05-05 11:40:04 +02:00
Erik Fröjdh	12ae1424fb	consistent use of ssize_t instead of int64_t (#167) ... - Consistent use of ssize_t to avoid issues on 32 bit platforms and also mac with (long long int as ssize_t)	2025-04-25 15:52:02 +02:00
mazzol_a	f06e722dce	changes from PR review	2025-04-25 11:38:56 +02:00
Erik Fröjdh	7b5e32a824	Api extra (#166) ... Changes to be able to run the example notebooks: - Invert gain map on setting (multiplication is faster but user supplies ADU/energy) - Cast after applying gain map not to loose precision (Important for int32 clusters) - "factor" for ClusterFileSink - Cluster size available to be able to create the right file sink	2025-04-25 10:31:16 +02:00
froejdh_e	86d343f5f5	merged with developer	2025-04-23 11:45:04 +02:00
Erik Fröjdh	fd0196f2fd	Developer (#164) ... - State before merging the new cluster vector API --------- Co-authored-by: Patrick <patrick.sieberer@psi.ch> Co-authored-by: JulianHeymes <julian.heymes@psi.ch> Co-authored-by: Dhanya Thattil <dhanya.thattil@psi.ch> Co-authored-by: Xiangyu Xie <45243914+xiangyuxie@users.noreply.github.com> Co-authored-by: xiangyu.xie <xiangyu.xie@psi.ch> Co-authored-by: siebsi <sieb.patr@gmail.com>	2025-04-22 16:41:48 +02:00
Erik Fröjdh	4088b0889d	Merge branch 'main' into developer	2025-04-22 16:18:48 +02:00
froejdh_e	c6e8e5f6a1	inverted gain map	2025-04-22 16:16:27 +02:00
froejdh_e	b501c31e38	added missed commit	2025-04-22 15:22:47 +02:00
Erik Fröjdh	326941e2b4	Custom base for decoding ADC data (#163) ... New function apply_custom_weights (can we find a better name) that takes a uint16 and a NDView<double,1> of bases for the conversion. For each supplied weight it is used as base (instead of 2) to convert from bits to a double. --------- Co-authored-by: siebsi <sieb.patr@gmail.com>	2025-04-22 15:20:46 +02:00
mazzol_a	177459c98a	added multithreaded cluster finder test	2025-04-17 17:09:53 +02:00
Mazzoleni Alice Francesca	c49a2fdf8e	removed cluster_2x2 and cluster3x3 specializations	2025-04-16 16:40:42 +02:00
Mazzoleni Alice Francesca	d4050ec557	enum is now enum class	2025-04-15 14:57:25 +02:00
Mazzoleni Alice Francesca	1174f7f434	fixed calculate eta	2025-04-15 13:18:25 +02:00
froejdh_e	8d8182c632	qMerge branch 'testing_clusters' of github.com:slsdetectorgroup/aare into testing_clusters	2025-04-15 08:05:12 +02:00
froejdh_e	5f34ab6df1	minor comment	2025-04-15 08:05:05 +02:00
Erik Fröjdh	5c8a5099fd	Merge branch 'api_cluster_vector' into testing_clusters	2025-04-14 16:40:47 +02:00
froejdh_e	7c93632605	tests and fix	2025-04-14 16:38:25 +02:00
Mazzoleni Alice Francesca	54def26334	added ClusterFile tests fixed some bugs in ClusterFile	2025-04-14 15:48:09 +02:00
Erik Fröjdh	a59e9656be	Making RawSubFile usable from Python (#158) ... - Removed a printout left from debugging - return also header when reading - added read_n - check for error in ifstream	2025-04-11 16:54:21 +02:00
Mazzoleni Alice Francesca	15e52565a9	dont convert to byte	2025-04-11 14:35:20 +02:00
froejdh_e	113f34cc98	fixes	2025-04-10 16:50:04 +02:00
Mazzoleni Alice Francesca	53a90e197e	added additional tests	2025-04-10 10:41:58 +02:00
Mazzoleni Alice Francesca	76f050f69f	solved merge conflict	2025-04-10 09:21:50 +02:00
Erik Fröjdh	8b0eee1e66	fixed warnings and removed ambiguous read_frame (#154) ... Fixed warnings: - unused variable in Interpolator - Narrowing conversions uint64-->int64 Removed an ambiguous function from JungfrauDataFile - NDarry read_frame(header&=nullptr) - Frame read_frame() NDArray and NDView size() is now signed	2025-04-09 17:54:55 +02:00
Erik Fröjdh	f16273a566	Adding support for Jungfrau .dat files (#152) ... closes #150 **Not addressed in this PR:** - pixels_per_frame, bytes_per_frame and tell should be made cost in FileInterface	2025-04-08 15:31:04 +02:00
Mazzoleni Alice Francesca	a12e43b176	underlying container of ClusterVcetor is now a std::vector	2025-04-07 12:27:44 +02:00
Mazzoleni Alice Francesca	9de84a7f87	added some python tests	2025-04-04 17:19:15 +02:00
Mazzoleni Alice Francesca	885309d97c	fix build	2025-04-03 17:14:28 +02:00
Mazzoleni Alice Francesca	de9fc16e89	generalize is_selected	2025-04-03 09:28:54 +02:00
Mazzoleni Alice Francesca	50eeba4005	restructured GainMap to have own class and generalized	2025-04-02 17:58:26 +02:00
Mazzoleni Alice Francesca	61af1105a1	templated eta and updated test	2025-04-02 14:42:38 +02:00