Erik Fröjdh
f16273a566
Adding support for Jungfrau .dat files ( #152 )
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Build on RHEL9 / buildh (push) Successful in 1m48s
closes #150
**Not addressed in this PR:**
- pixels_per_frame, bytes_per_frame and tell should be made cost in
FileInterface
2025-04-08 15:31:04 +02:00
froejdh_e
8cad7a50a6
fixed py
Build the package using cmake then documentation / build (ubuntu-latest, 3.12) (push) Failing after 42s
2025-04-01 15:00:03 +02:00
Erik Fröjdh
9d8e803474
Merge branch 'main' into developer
2025-04-01 14:35:27 +02:00
Erik Fröjdh
a42c0d645b
added roi, noise and gain ( #143 )
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- Moved definitions of Cluster_2x2 and Cluster_3x3 to it's own file
- Added optional members for ROI, noise_map and gain_map in ClusterFile
**API:**
After creating the ClusterFile the user can set one or all of: roi,
noise_map, gain_map
```python
f = ClusterFile(fname)
f.set_roi(roi) #aare.ROI
f.set_noise_map(noise_map) #numpy array
f.set_gain_map(gain_map) #numpy array
```
**When reading clusters they are evaluated in the order:**
1. If ROI is enabled check that the cluster is within the ROI
1. If noise_map is enabled check that the cluster meets one of the
conditions
- Center pixel above noise
- Highest 2x2 sum above 2x noise
- 3x3 sum above 3x noise
1. If gain_map is set apply the gain map before returning the clusters
(not used for noise cut)
**Open questions:**
1. Check for out of bounds access in noise and gain map?
closes #139
closes #135
closes #90
2025-04-01 14:31:25 +02:00
Erik Fröjdh
5d8ad27b21
Developer ( #138 )
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Build the package using cmake then documentation / build (ubuntu-latest, 3.12) (push) Successful in 1m45s
- Fully functioning variable size cluster finder
- Added interpolation
- Bit reordering for ADC SAR 05
---------
Co-authored-by: Patrick <patrick.sieberer@psi.ch>
Co-authored-by: JulianHeymes <julian.heymes@psi.ch>
Co-authored-by: Dhanya Thattil <dhanya.thattil@psi.ch>
Co-authored-by: xiangyu.xie <xiangyu.xie@psi.ch>
2025-03-20 12:52:04 +01:00
Erik Fröjdh
11cd2ec654
Interpolate ( #137 )
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- added eta based interpolation
2025-03-18 17:45:38 +01:00
froejdh_e
8ae6bb76f8
removed warnings added clang-tidy
2025-02-21 11:18:39 +01:00
Xiangyu Xie
1d2c38c1d4
Enable VarClusterFinder ( #134 )
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Co-authored-by: xiangyu.xie <xiangyu.xie@psi.ch>
2025-02-19 16:11:24 +01:00
Erik Fröjdh
b7a47576a1
Multi threaded fitting and returning chi2 ( #132 )
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Co-authored-by: Patrick <patrick.sieberer@psi.ch>
Co-authored-by: JulianHeymes <julian.heymes@psi.ch>
Co-authored-by: Dhanya Thattil <dhanya.thattil@psi.ch>
2025-02-19 07:19:59 +01:00
Erik Fröjdh
fc1c9f35d6
Merge branch 'main' into developer
2025-02-18 21:52:20 +01:00
Erik Fröjdh
6a83988485
Added chi2 to fit results ( #131 )
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- fit_gaus and fit_pol1 now return a dict
- calculate chi2 after fit
- cleaned up code
2025-02-18 21:13:27 +01:00
Erik Fröjdh
dadf5f4869
Added fitting, fixed roi etc ( #129 )
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Co-authored-by: Patrick <patrick.sieberer@psi.ch>
Co-authored-by: JulianHeymes <julian.heymes@psi.ch>
2025-02-12 16:50:31 +01:00
Erik Fröjdh
7309cff47c
Added fitting with lmfit ( #128 )
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- added stand alone fitting using:
https://jugit.fz-juelich.de/mlz/lmfit.git
- fit_gaus, fit_pol1 with and without errors
- multi threaded fitting
---------
Co-authored-by: JulianHeymes <julian.heymes@psi.ch>
2025-02-12 16:35:48 +01:00
Erik Fröjdh
c0c5e07ad8
added decoding of adc_sar_04 ( #127 )
2025-02-12 16:17:32 +01:00
Erik Fröjdh
d86cb533c8
Fix minor warnings ( #126 )
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- Unused variables
- signed vs. unsigned
- added -flto=auto
2025-02-11 11:48:01 +01:00
Erik Fröjdh
5a3ca2ae2d
Decoding for ADC SAR 05 64->16bit ( #124 )
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Co-authored-by: Patrick <patrick.sieberer@psi.ch>
2025-02-05 14:40:26 +01:00
froejdh_e
6cde968c60
summing 2x2
2025-01-15 16:12:06 +01:00
froejdh_e
f6d736facd
docs for ClusterFile
2025-01-15 09:15:41 +01:00
froejdh_e
7ce02006f2
clear pedestal
2025-01-10 17:26:23 +01:00
froejdh_e
7550a2cb97
fixing read bug
2025-01-10 15:33:56 +01:00
froejdh_e
caf7b4ecdb
added docs for ClusterFinderMT
2025-01-10 10:22:04 +01:00
froejdh_e
cc95561eda
MultiThreaded Cluster finder
2025-01-09 16:53:22 +01:00
froejdh_e
dc9e10016d
WIP
2025-01-08 16:45:24 +01:00
froejdh_e
acdce8454b
moved pd to double
2025-01-07 15:01:43 +01:00
froejdh_e
e6098c02ef
bumped version
2024-12-16 14:24:46 +01:00
froejdh_e
f88b53387f
WIP
2024-12-12 17:58:04 +01:00
froejdh_e
a0f481c0ee
mod pedestal
2024-12-12 14:34:10 +01:00
froejdh_e
b3a9e9576b
WIP
2024-12-11 16:27:36 +01:00
froejdh_e
60534add92
WIP
2024-12-11 09:54:33 +01:00
froejdh_e
7f2a23d5b1
accumulating clusters in one array
2024-12-10 22:00:12 +01:00
froejdh_e
6a150e8d98
WIP
2024-12-10 17:21:05 +01:00
froejdh_e
8bf9ac55ce
modified read_n also for File and RawFile
2024-11-27 09:31:57 +01:00
d48482e9da
Modified moench05 transform: new firmware (moench05), legacy firmware (moench05_old), 1g readout (moench05_1g)
2024-11-25 16:39:08 +01:00
Erik Fröjdh
9f7cdbcb48
conversion warnings
2024-11-18 18:18:55 +01:00
Erik Fröjdh
17f8d28019
frame reading for cluster file
2024-11-15 16:13:46 +01:00
Erik Fröjdh
0d058274d5
WIP
2024-11-14 17:03:16 +01:00
Erik Fröjdh
7ffd732d98
ported reading clusters ( #95 )
2024-11-14 16:22:38 +01:00
Erik Fröjdh
17917ac7ea
Merge branch 'main' into developer
2024-11-12 16:44:15 +01:00
Erik Fröjdh
db936b6357
improved documentation
2024-11-12 16:39:03 +01:00
froejdh_e
2ee1a5583e
WIP
2024-11-12 09:27:01 +01:00
Erik Fröjdh
349e3af8e1
Brining in changes ( #93 )
2024-11-11 19:59:55 +01:00
Erik Fröjdh
a0b6c4cc03
Merge branch 'main' into developer
2024-11-11 18:52:23 +01:00
Erik Fröjdh
5f21759c8c
removed prints, bumped version
2024-11-11 18:22:18 +01:00
froejdh_e
ecf1b2a90b
WIP
2024-11-11 17:13:48 +01:00
froejdh_e
b172c7aa0a
starting work on ROI
2024-11-07 16:24:48 +01:00
Erik Fröjdh
d8d1f0c517
Taking v1 as the first release ( #92 )
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- file reading
- decoding master file
2024-11-07 10:14:20 +01:00
Erik Fröjdh
9c220bff51
added simple decoding of scan parameters
2024-11-07 08:14:33 +01:00
Erik Fröjdh
b2e5c71f9c
MH02 1-4 counters
2024-11-06 21:32:03 +01:00
Erik Fröjdh
cbfd1f0b6c
ClusterFinder
2024-11-06 12:41:41 +01:00
Erik Fröjdh
25812cb291
RawFile is now using RawMasterFile
2024-11-06 09:10:09 +01:00
