formatted main branch

include/aare/RawSubFile.hpp

@@ -10,32 +10,34 @@
 namespace aare {
 
 /**
- * @brief Class to read a singe subfile written in .raw format. Used from RawFile to read
- * the entire detector. Can be used directly to read part of the image.
+ * @brief Class to read a singe subfile written in .raw format. Used from
+ * RawFile to read the entire detector. Can be used directly to read part of the
+ * image.
  */
 class RawSubFile {
   protected:
     std::ifstream m_file;
     DetectorType m_detector_type;
     size_t m_bitdepth;
-    std::filesystem::path m_path;     //!< path to the subfile
-    std::string m_base_name;          //!< base name used for formatting file names
-    size_t m_offset{}; //!< file index of the first file, allow starting at non zero file
-    size_t m_total_frames{};    //!< total number of frames in the series of files
+    std::filesystem::path m_path; //!< path to the subfile
+    std::string m_base_name;      //!< base name used for formatting file names
+    size_t m_offset{}; //!< file index of the first file, allow starting at non
+                       //!< zero file
+    size_t m_total_frames{}; //!< total number of frames in the series of files
     size_t m_rows{};
     size_t m_cols{};
     size_t m_bytes_per_frame{};
 
-
     int m_module_index{};
-    size_t m_current_file_index{};   //!< The index of the open file
-    size_t m_current_frame_index{};  //!< The index of the current frame (with reference to all files)
-    std::vector<size_t> m_last_frame_in_file{}; //!< Used for seeking to the correct file
+    size_t m_current_file_index{};  //!< The index of the open file
+    size_t m_current_frame_index{}; //!< The index of the current frame (with
+                                    //!< reference to all files)
+    std::vector<size_t>
+        m_last_frame_in_file{}; //!< Used for seeking to the correct file
 
     uint32_t m_pos_row{};
     uint32_t m_pos_col{};
- 
-    
+
     std::optional<NDArray<ssize_t, 2>> m_pixel_map;
 
   public:
@@ -49,12 +51,14 @@ class RawSubFile {
      * @throws std::invalid_argument if the detector,type pair is not supported
      */
     RawSubFile(const std::filesystem::path &fname, DetectorType detector,
-               size_t rows, size_t cols, size_t bitdepth, uint32_t pos_row = 0, uint32_t pos_col = 0);
+               size_t rows, size_t cols, size_t bitdepth, uint32_t pos_row = 0,
+               uint32_t pos_col = 0);
 
     ~RawSubFile() = default;
     /**
      * @brief Seek to the given frame number
-     * @note Puts the file pointer at the start of the header, not the start of the data
+     * @note Puts the file pointer at the start of the header, not the start of
+     * the data
      * @param frame_index frame position in file to seek to
      * @throws std::runtime_error if the frame number is out of range
      */
@@ -62,14 +66,15 @@ class RawSubFile {
     size_t tell();
 
     void read_into(std::byte *image_buf, DetectorHeader *header = nullptr);
-    void read_into(std::byte *image_buf, size_t n_frames, DetectorHeader *header= nullptr);
+    void read_into(std::byte *image_buf, size_t n_frames,
+                   DetectorHeader *header = nullptr);
     void get_part(std::byte *buffer, size_t frame_index);
-    
+
     void read_header(DetectorHeader *header);
-    
+
     size_t rows() const;
     size_t cols() const;
-    
+
     size_t frame_number(size_t frame_index);
 
     size_t bytes_per_frame() const { return m_bytes_per_frame; }
@@ -78,15 +83,13 @@ class RawSubFile {
 
     size_t frames_in_file() const { return m_total_frames; }
 
-private:
-  template <typename T>
-  void read_with_map(std::byte *image_buf);
-
-  void parse_fname(const std::filesystem::path &fname);
-  void scan_files();
-  void open_file(size_t file_index);
-  std::filesystem::path fpath(size_t file_index) const;
+  private:
+    template <typename T> void read_with_map(std::byte *image_buf);
 
+    void parse_fname(const std::filesystem::path &fname);
+    void scan_files();
+    void open_file(size_t file_index);
+    std::filesystem::path fpath(size_t file_index) const;
 };
 
 } // namespace aare