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https://github.com/slsdetectorgroup/aare.git
synced 2026-02-20 04:18:40 +01:00
Added ability to save a cluster larger than we search for
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@@ -19,9 +19,11 @@ class ClusterFinder {
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const PEDESTAL_TYPE c3;
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Pedestal<PEDESTAL_TYPE> m_pedestal;
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ClusterVector<ClusterType> m_clusters;
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const uint32_t ClusterSizeX;
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const uint32_t ClusterSizeY;
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static const uint8_t ClusterSizeX = ClusterType::cluster_size_x;
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static const uint8_t ClusterSizeY = ClusterType::cluster_size_y;
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static const uint8_t SavedClusterSizeX = ClusterType::cluster_size_x;
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static const uint8_t SavedClusterSizeY = ClusterType::cluster_size_y;
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using CT = typename ClusterType::value_type;
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public:
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@@ -34,10 +36,12 @@ class ClusterFinder {
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*
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*/
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ClusterFinder(Shape<2> image_size, PEDESTAL_TYPE nSigma = 5.0,
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size_t capacity = 1000000)
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size_t capacity = 1000000,
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uint32_t cluster_size_x = 3, uint32_t cluster_size_y = 3)
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: m_image_size(image_size), m_nSigma(nSigma),
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c2(sqrt((ClusterSizeY + 1) / 2 * (ClusterSizeX + 1) / 2)),
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c3(sqrt(ClusterSizeX * ClusterSizeY)),
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c2(sqrt((cluster_size_y + 1) / 2 * (cluster_size_x + 1) / 2)),
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c3(sqrt(cluster_size_x * cluster_size_y)),
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ClusterSizeX(cluster_size_x), ClusterSizeY(cluster_size_y),
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m_pedestal(image_size[0], image_size[1]), m_clusters(capacity) {
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LOG(logDEBUG) << "ClusterFinder: "
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<< "image_size: " << image_size[0] << "x" << image_size[1]
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@@ -74,6 +78,9 @@ class ClusterFinder {
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// // 4,4 -> +/- 2
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int dy = ClusterSizeY / 2;
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int dx = ClusterSizeX / 2;
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int dy2 = SavedClusterSizeY / 2;
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int dx2 = SavedClusterSizeX / 2;
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int has_center_pixel_x =
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ClusterSizeX %
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2; // for even sized clusters there is no proper cluster center and
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@@ -135,18 +142,16 @@ class ClusterFinder {
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// It's worth redoing the look since most of the time we
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// don't have a photon
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int i = 0;
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for (int ir = -dy; ir < dy + has_center_pixel_y; ir++) {
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for (int ic = -dx; ic < dx + has_center_pixel_y; ic++) {
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for (int ir = -dy2; ir < dy2 + has_center_pixel_y; ir++) {
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for (int ic = -dx2; ic < dx2 + has_center_pixel_y; ic++) {
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if (ix + ic >= 0 && ix + ic < frame.shape(1) &&
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iy + ir >= 0 && iy + ir < frame.shape(0)) {
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CT tmp =
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static_cast<CT>(frame(iy + ir, ix + ic)) -
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static_cast<CT>(
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m_pedestal.mean(iy + ir, ix + ic));
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cluster.data[i] =
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tmp; // Watch for out of bounds access
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i++;
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CT tmp = static_cast<CT>(frame(iy + ir, ix + ic)) - static_cast<CT>(m_pedestal.mean(iy + ir, ix + ic));
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cluster.data[i] = tmp; // Watch for out of bounds access
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}
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i++;
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}
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}
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@@ -121,7 +121,8 @@ class ClusterFinderMT {
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* @param n_threads number of threads to use
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*/
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ClusterFinderMT(Shape<2> image_size, PEDESTAL_TYPE nSigma = 5.0,
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size_t capacity = 2000, size_t n_threads = 3)
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size_t capacity = 2000, size_t n_threads = 3,
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uint32_t cluster_size_x = 3, uint32_t cluster_size_y = 3)
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: m_n_threads(n_threads) {
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LOG(logDEBUG1) << "ClusterFinderMT: "
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@@ -134,7 +135,7 @@ class ClusterFinderMT {
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m_cluster_finders.push_back(
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std::make_unique<
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ClusterFinder<ClusterType, FRAME_TYPE, PEDESTAL_TYPE>>(
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image_size, nSigma, capacity));
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image_size, nSigma, capacity, cluster_size_x, cluster_size_y));
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}
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for (size_t i = 0; i < n_threads; i++) {
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m_input_queues.emplace_back(std::make_unique<InputQueue>(200));
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