reading raw moench files (PR#3) (#32)

* reading moench and raw files

* read mythen3 files

* read multiport mythen3

* delete .vscode and .env.dev

---------

Co-authored-by: Bechir <bechir.brahem420@gmail.com>

data/jungfrau/read_multiport.py

@@ -0,0 +1,80 @@
+import numpy as np
+import matplotlib.pyplot as plt
+plt.ion()
+
+header_dt = np.dtype(
+    [
+        ("Frame Number", "u8"),
+        ("SubFrame Number/ExpLength", "u4"),
+        ("Packet Number", "u4"),
+        ("Bunch ID", "u8"),
+        ("Timestamp", "u8"),
+        ("Module Id", "u2"),
+        ("Row", "u2"),
+        ("Column", "u2"),
+        ("Reserved", "u2"),
+        ("Debug", "u4"),
+        ("Round Robin Number", "u2"),
+        ("Detector Type", "u1"),
+        ("Header Version", "u1"),
+        ("Packets caught mask", "8u8")
+    ]
+)
+
+# Read three frames from a jungfrau file with a single interface
+
+frames = 1
+parts = 2
+
+frame_cols = 1024
+frame_rows = 512
+
+part_cols = 1024
+part_rows = 256
+
+
+parts_data = np.zeros((frames,parts,part_rows,part_cols), dtype = np.uint16)
+data = np.zeros((frames,frame_rows,frame_cols), dtype = np.uint16)
+header = np.zeros((frames,parts), dtype = header_dt)
+
+
+
+
+for frame in range(frames):
+
+    for part in range(parts):
+        file_name = f'jungfrau_double_d{part}_f{frame}_{0}.raw'
+        print("Reading file:", file_name)
+        with open(file_name) as f:
+            header[frame,part] = np.fromfile(f, dtype=header_dt, count = 1)
+            parts_data[frame,part] = np.fromfile(f, dtype=np.uint16,count = part_rows*part_cols).reshape(part_rows,part_cols)
+
+    
+    data[frame] = np.concatenate((parts_data[frame,0],parts_data[frame,1]),axis=0)
+
+
+
+# for frame in range(frames):
+#     print("Frame:", frame)
+#     print("Data:\n", data[frame])
+
+# print(data[0,0,0])
+# print(data[0,0,1])
+# print(data[0,0,50])
+print(data[0,0,0])
+print(data[0,0,1])
+print(data[0,255,1023])
+
+print(data[0,511,1023])
+# print()
+# print(parts_data[0,0,0,0])
+# print(parts_data[0,0,0,1])
+# print(parts_data[0,0,1,0])
+
+# print(data.shape)
+
+
+
+#fig, ax = plt.subplots()
+#im = ax.imshow(data[0])
+#im.set_clim(2000,4000)

data/moench/moench04_noise_200V_sto_both_100us_no_light_thresh_900_master_0.raw

@@ -0,0 +1,40 @@
+Version                    : 6.4
+TimeStamp                  : Wed Aug 31 09:08:49 2022
+
+Detector Type              : ChipTestBoard
+Timing Mode                : auto
+Geometry                   : [1, 1]
+Image Size                 : 360000 bytes
+Pixels                     : [96, 1]
+Max Frames Per File        : 20000
+Frame Discard Policy       : nodiscard
+Frame Padding              : 1
+Scan Parameters            : [disabled]
+Total Frames               : 100
+Exptime                    : 100us
+Period                     : 4ms
+Ten Giga                   : 1
+ADC Mask                   : 0xffffffff
+Analog Flag                : 1
+Analog Samples             : 5000
+Digital Flag               : 1
+Digital Samples            : 5000
+Dbit Offset                : 0
+Dbit Bitset                : 0
+Frames in File             : 100
+
+#Frame Header
+Frame Number               : 8 bytes
+SubFrame Number/ExpLength  : 4 bytes
+Packet Number              : 4 bytes
+Bunch ID                   : 8 bytes
+Timestamp                  : 8 bytes
+Module Id                  : 2 bytes
+Row                        : 2 bytes
+Column                     : 2 bytes
+Reserved                   : 2 bytes
+Debug                      : 4 bytes
+Round Robin Number         : 2 bytes
+Detector Type              : 1 byte
+Header Version             : 1 byte
+Packets Caught Mask        : 64 bytes

data/mythen/scan242_master_3.raw

@@ -0,0 +1,40 @@
+Version                    : 6.2
+TimeStamp                  : Mon Sep 14 16:21:09 2020
+
+Detector Type              : Mythen3
+Timing Mode                : auto
+Geometry                   : [4, 1]
+Image Size                 : 5120 bytes
+Pixels                     : [1280, 1]
+Max Frames Per File        : 10000
+Frame Discard Policy       : nodiscard
+Frame Padding              : 1
+Scan Parameters            : [disabled]
+Total Frames               : 1
+Dynamic Range              : 32
+Ten Giga                   : 1
+Period                     : 0ns
+Counter Mask               : 0x1
+Exptime1                   : 0.2s
+Exptime2                   : 0.2s
+Exptime3                   : 0.2s
+GateDelay1                 : 0.1s
+GateDelay2                 : 0.1s
+GateDelay3                 : 0.1s
+Gates                      : 1
+
+#Frame Header
+Frame Number               : 8 bytes
+SubFrame Number/ExpLength  : 4 bytes
+Packet Number              : 4 bytes
+Bunch ID                   : 8 bytes
+Timestamp                  : 8 bytes
+Module Id                  : 2 bytes
+Row                        : 2 bytes
+Column                     : 2 bytes
+Reserved                   : 2 bytes
+Debug                      : 4 bytes
+Round Robin Number         : 2 bytes
+Detector Type              : 1 byte
+Header Version             : 1 byte
+Packets Caught Mask        : 64 bytes