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https://github.com/slsdetectorgroup/aare.git
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Feature/reactivate python bindings (#74)
major changes: - add python bindings for all c++ features except network_io - changes to cross compile on windows,linux and macos - fix bugs with cluster_finder - use Dtype in Frame instead of bitdepth - remove boost::program_options and replace with our implementation - add Transforms class that applies a sequence of functions (c++ or python functions) on a Frame. - remove frame reorder and flip from SubFile.cpp. use Transforms instead - Test clusterFinder and Pedestal results in comparison with slsDetectorCalibration --------- Co-authored-by: Bechir <bechir.brahem420@gmail.com> Co-authored-by: Erik Fröjdh <erik.frojdh@gmail.com>
This commit is contained in:
Bechir Braham
36
.github/workflows/clang-tidy.yml
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36
.github/workflows/clang-tidy.yml
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@ -1,36 +0,0 @@
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name: clang-tidy
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on:
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push:
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jobs:
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clang-tidy:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: mamba-org/setup-micromamba@v1
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with:
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micromamba-version: '1.5.6-0' # any version from https://github.com/mamba-org/micromamba-releases
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environment-file: aare-environment.yml
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init-shell: bash
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cache-environment: true
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post-cleanup: 'all'
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- name: update clang-tidy
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shell: bash -el {0}
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run: |
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wget https://apt.llvm.org/llvm.sh
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chmod +x llvm.sh
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sudo ./llvm.sh 17
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sudo apt install clang-tidy-17
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- name: cmake
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shell: bash -el {0}
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run: |
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mkdir build
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cd build
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cmake .. -DAARE_SYSTEM_LIBRARIES="ON" -DCMAKE_BUILD_TYPE="Debug" -DAARE_PYTHON_BINDINGS="OFF" -DAARE_IN_GITHUB_ACTIONS="ON"
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- name: linting checks
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shell: bash -el {0}
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run: |
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clang-tidy-17 --version
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echo $GITHUB_ACTIONS
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cd build
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cmake --build . --target clang-tidy
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26
.github/workflows/common-workflow.yml
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26
.github/workflows/common-workflow.yml
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@ -11,13 +11,18 @@ on:
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type: string
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default: Debug
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use-python-bindings:
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# required: true
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required: true
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type: string
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default: OFF
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os:
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required: true
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type: string
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default: ubuntu-latest
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jobs:
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build-and-test:
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runs-on: ubuntu-latest
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name: "Build and test[os: ${{ inputs.os }}, build-type: ${{ inputs.build-type }}, use-system-libraries: ${{ inputs.use-system-libraries }}, use-python-bindings: ${{ inputs.use-python-bindings }}]"
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runs-on: ${{ inputs.os }}
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steps:
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- name: Dump GitHub context
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env:
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@ -42,9 +47,6 @@ jobs:
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echo "build-type: ${{inputs.build-type}}"
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echo "use-python-bindings: ${{inputs.use-python-bindings}}"
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- uses: actions/checkout@v4
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- uses: mamba-org/setup-micromamba@v1
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if: ${{ contains(inputs.use-system-libraries, 'ON')}}
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@ -54,6 +56,7 @@ jobs:
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init-shell: bash
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cache-environment: true
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post-cleanup: 'all'
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- name: build
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shell: bash -el {0}
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run: |
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@ -65,7 +68,18 @@ jobs:
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run: |
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cd build/
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./run_tests
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if: ${{ inputs.os != 'windows-latest' }}
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- name: run tests
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run: |
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cd build/
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dir
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cd Debug/
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dir
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start run_tests.exe
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# start /B /WAIT "run_tests.exe"
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if: ${{ inputs.os == 'windows-latest' }}
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- name: run examples
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if: ${{ inputs.os != 'windows-latest' }}
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# find all examples in build/examples and run them
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run: |
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pwd
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@ -73,7 +87,7 @@ jobs:
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ls build/examples/*_example
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# examples to run
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cd build/examples
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examples=(raw_example cluster_example json_example logger_example multiport_example mythen_example)
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examples=(raw_example json_example logger_example multiport_example mythen_example)
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examples+=(numpy_read_example numpy_write_example)
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for example in "${examples[@]}"; do
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echo "Running example: $example"
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21
.github/workflows/config.yml
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21
.github/workflows/config.yml
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@ -11,18 +11,23 @@ jobs:
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# fail-fast is true by default
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fail-fast: false
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matrix:
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use-system-libraries: ["OFF","ON"]
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build-type: ["Debug","Release"]
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# use-python-bindings: ["OFF","ON"]
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# exclude:
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# # excludes combinations that are not supported
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# - use-python-bindings: "ON"
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# use-sanitizers: "ON"
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os: ["macos-latest", "ubuntu-latest", "windows-latest"]
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build-type: ["Release", "Debug"]
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use-system-libraries: ["ON", "OFF"]
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use-python-bindings: ["OFF", "ON"]
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exclude:
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# excludes combinations that are not supported
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- os: "windows-latest"
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build-type: "Release" # TODO: fix this
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- os: "windows-latest"
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build-type: "Debug"
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use-system-libraries: "ON" # different _ITERATOR_DEBUG_LEVEL for system libraries
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uses: ./.github/workflows/common-workflow.yml # calls the one above
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with:
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use-system-libraries: ${{ matrix.use-system-libraries }}
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build-type: ${{ matrix.build-type }}
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# use-python-bindings: ${{ matrix.use-python-bindings }}
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use-python-bindings: ${{ matrix.use-python-bindings }}
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os: ${{ matrix.os }}
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secrets: inherit
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33
.github/workflows/format.yml
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33
.github/workflows/format.yml
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@ -1,33 +0,0 @@
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name: test-formatting
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on:
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push:
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jobs:
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test-formatting:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: mamba-org/setup-micromamba@v1
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with:
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micromamba-version: '1.5.6-0' # any version from https://github.com/mamba-org/micromamba-releases
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environment-file: aare-environment.yml
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init-shell: bash
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cache-environment: true
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post-cleanup: 'all'
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- name: cmake
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shell: bash -el {0}
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run: |
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mkdir build
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cd build
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cmake .. -DAARE_SYSTEM_LIBRARIES="ON" -DCMAKE_BUILD_TYPE="Debug" -DAARE_PYTHON_BINDINGS="OFF" -DAARE_IN_GITHUB_ACTIONS="ON"
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- name: linting checks
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shell: bash -el {0}
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run: |
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# find all examples in build/examples and run them
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cd build
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cmake --build . --target=check-format
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