Dev/filereading for disabled udp (#342)

- handles file reading of disabled udp ports 
- adds members disabled_udp_ports in master file as an optional 
- adds member diasbled_udp_port_types in master file as an optional
- Treats enabled udp ports as ROIs 
- merges/combines consecutive ROis into one 

### To discuss: 

- right now can only handle either ROI or disabled udp ports (disabled
udp ports has higher precedence)
- Should Frames in File be removed from Master File as value is nonsense
for disabled udp ports

---------

Co-authored-by: Erik Fröjdh <erik.frojdh@psi.ch>

src/ROIGeometry.cpp

@@ -5,25 +5,24 @@ namespace aare {
 
 ROIGeometry::ROIGeometry(const ROI &roi, DetectorGeometry &geometry)
     : m_pixels_x(roi.width()), m_pixels_y(roi.height()), m_geometry(geometry) {
-    m_module_indices_in_roi.reserve(m_geometry.n_modules());
-    // determine which modules are in the roi
-    for (size_t i = 0; i < m_geometry.n_modules(); ++i) {
-        auto &module_geometry = m_geometry.get_module_geometries(i);
-        if (module_geometry.module_in_roi(roi)) {
-            module_geometry.update_geometry_with_roi(roi);
-            m_module_indices_in_roi.push_back(i);
+
+    if (complete_ROI({roi}, geometry)) {
+        m_module_indices_in_roi.resize(m_geometry.n_modules());
+        std::iota(m_module_indices_in_roi.begin(),
+                  m_module_indices_in_roi.end(), 0);
+    } else {
+        m_module_indices_in_roi.reserve(m_geometry.n_modules());
+        // determine which modules are in the roi
+        for (size_t i = 0; i < m_geometry.n_modules(); ++i) {
+            auto &module_geometry = m_geometry.get_module_geometries(i);
+            if (module_geometry.module_in_roi(roi)) {
+                module_geometry.update_geometry_with_roi(roi);
+                m_module_indices_in_roi.push_back(i);
+            }
         }
     }
 }
 
-ROIGeometry::ROIGeometry(DetectorGeometry &geometry)
-    : m_pixels_x(geometry.pixels_x()), m_pixels_y(geometry.pixels_y()),
-      m_geometry(geometry) {
-    m_module_indices_in_roi.resize(m_geometry.n_modules());
-    std::iota(m_module_indices_in_roi.begin(), m_module_indices_in_roi.end(),
-              0);
-}
-
 size_t ROIGeometry::num_modules_in_roi() const {
     return m_module_indices_in_roi.size();
 }