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Insert gap pixels only between chips unless module gaps are set
An unset GapPixels::module_gaps defaulted to the chip gap, so every module boundary received two extra rows or columns. Two stacked Jungfrau modules read as 1030x1030 instead of 1030x1028. Unset now means no pixels between modules; only the chip boundaries inside a module receive a gap. Also drop the explicit lambda capture in split_edge_counts that clang reported as unused for floating point pixels.
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@@ -32,8 +32,7 @@ py::array insert_gap_pixels_typed(const py::array &image, const ROI &roi,
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void define_gap_pixels_bindings(py::module &m) {
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py::class_<ModuleGaps>(m, "ModuleGaps", R"(
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Pixels inserted at each boundary between modules, replacing the chip
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gap there.
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Pixels inserted at each boundary between modules.
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)")
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.def(py::init<>())
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.def(py::init<ssize_t, ssize_t>(), py::arg("x"), py::arg("y"))
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@@ -55,8 +54,8 @@ void define_gap_pixels_bindings(py::module &m) {
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Pixels inserted at each chip boundary inside a module. Source
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column 255 expands to the right and column 256 to the left.
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module_gaps : ModuleGaps, optional
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Pixels inserted at module boundaries instead of the chip gap.
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None means module boundaries receive the chip gap.
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Pixels inserted at module boundaries. None means no pixels are
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inserted between modules.
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fill_value : float
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Value written to gap pixels, converted to the pixel type. Module
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gaps always receive this value.
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@@ -34,7 +34,7 @@ def test_configuration_defaults_and_equality():
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def test_gapped_shape():
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assert gapped_shape(ROI(0, 1024, 0, 512), DetectorType.Jungfrau) == (514, 1030)
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assert gapped_shape(ROI(0, 1024, 0, 1024), DetectorType.Jungfrau) == (1030, 1030)
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assert gapped_shape(ROI(0, 1024, 0, 1024), DetectorType.Jungfrau) == (1028, 1030)
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assert gapped_shape(ROI(0, 1024, 0, 1024), DetectorType.Jungfrau, GapPixels(module_gaps=ModuleGaps(8, 36))) == (1064, 1030)
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assert gapped_shape(ROI(0, 512, 0, 512), DetectorType.Eiger, quad=True) == (514, 514)
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assert gapped_shape(ROI(256, 512, 0, 256), DetectorType.Jungfrau) == (256, 256)
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@@ -54,6 +54,16 @@ def test_insert_gap_pixels_matches_numpy(dtype):
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assert (result == expected).all()
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def test_insert_gap_pixels_without_module_gaps():
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# two stacked modules: chip gaps at rows 256 and 768, none at the module
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# boundary at row 512
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image = np.arange(1024 * 1024, dtype=np.uint32).reshape(1024, 1024)
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result = insert_gap_pixels(image, DetectorType.Jungfrau)
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expected = reference(image, [(256, 2), (512, 2), (768, 2)], [(256, 2), (768, 2)])
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assert result.shape == (1028, 1030)
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assert (result == expected).all()
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def test_insert_gap_pixels_with_module_gaps():
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image = np.arange(1024 * 1024, dtype=np.uint32).reshape(1024, 1024)
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gaps = GapPixels(module_gaps=ModuleGaps(8, 36), fill_value=9)
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@@ -527,8 +527,9 @@ def test_raw_file_gap_pixels(tmp_path, layout):
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gaps = GapPixels(fill_value=5)
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with RawFile(master_path, gap_pixels=gaps) as reader:
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assert reader.gap_pixels == gaps
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assert (reader.rows(), reader.cols()) == (512 * layout_rows + 2 * (layout_rows * 2 - 1),
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1024 * layout_cols + 2 * (layout_cols * 4 - 1))
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# one chip boundary per module row, three per module column and no
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# gap between modules
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assert (reader.rows(), reader.cols()) == ((512 + 2) * layout_rows, (1024 + 6) * layout_cols)
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header, image = reader.read_frame()
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assert header.size == layout_rows * layout_cols
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assert (image == insert_gap_pixels(expected, DetectorType.Jungfrau, gaps)).all()
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