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fix ci and add formatting (#48)

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* add dependency

* dont run blocking zmq example and add formatting

* format files
This commit is contained in:
Bechir Braham
2024-04-03 13:47:52 +02:00
committed by GitHub
parent 23c855acbc
commit 31a20d4f6c
34 changed files with 438 additions and 522 deletions
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26
file_io/src/NumpyFile.cpp
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@ -1,10 +1,10 @@
#include "aare/NumpyFile.hpp"
namespace aare{
namespace aare {
NumpyFile::NumpyFile(const std::filesystem::path& fname) {
//TODO! add opts to constructor
NumpyFile::NumpyFile(const std::filesystem::path &fname) {
// TODO! add opts to constructor
m_fname = fname;
fp = fopen(m_fname.c_str(), "rb");
if (!fp) {
@ -26,8 +26,7 @@ NumpyFile::NumpyFile(FileConfig config, header_t header) {
throw std::runtime_error(fmt::format("Could not open: {} for reading", m_fname.c_str()));
}
initial_header_len =
aare::NumpyHelpers::write_header(std::filesystem::path(m_fname.c_str()), header);
initial_header_len = aare::NumpyHelpers::write_header(std::filesystem::path(m_fname.c_str()), header);
}
void NumpyFile::write(Frame &frame) {
@ -41,8 +40,6 @@ void NumpyFile::write(Frame &frame) {
fwrite(frame.data(), frame.size(), 1, fp);
}
Frame NumpyFile::get_frame(size_t frame_number) {
Frame frame(m_header.shape[1], m_header.shape[2], m_header.dtype.bitdepth());
get_frame_into(frame_number, frame.data());
@ -97,17 +94,14 @@ NumpyFile::~NumpyFile() {
std::string header_str = ss.str();
// write header
fwrite(header_str.c_str(), header_str.size(), 1, fp);
}
if (fp != nullptr) {
fclose(fp);
}
}
void NumpyFile::load_metadata(){
void NumpyFile::load_metadata() {
// read magic number
std::array<char, 6> tmp{};
@ -120,8 +114,8 @@ void NumpyFile::load_metadata(){
}
// read version
fread(reinterpret_cast<char *>(&major_ver_), sizeof(major_ver_), 1,fp);
fread(reinterpret_cast<char *>(&minor_ver_), sizeof(minor_ver_), 1,fp);
fread(reinterpret_cast<char *>(&major_ver_), sizeof(major_ver_), 1, fp);
fread(reinterpret_cast<char *>(&minor_ver_), sizeof(minor_ver_), 1, fp);
if (major_ver_ == 1) {
header_len_size = 2;
@ -132,7 +126,7 @@ void NumpyFile::load_metadata(){
}
// read header length
fread(reinterpret_cast<char *>(&header_len), header_len_size,1, fp);
fread(reinterpret_cast<char *>(&header_len), header_len_size, 1, fp);
header_size = aare::NumpyHelpers::magic_string_length + 2 + header_len_size + header_len;
if (header_size % 16 != 0) {
fmt::print("Warning: header length is not a multiple of 16\n");
@ -140,8 +134,7 @@ void NumpyFile::load_metadata(){
// read header
std::string header(header_len, '\0');
fread(header.data(), header_len,1,fp);
fread(header.data(), header_len, 1, fp);
// parse header
std::vector<std::string> keys{"descr", "fortran_order", "shape"};
@ -171,5 +164,4 @@ void NumpyFile::load_metadata(){
m_header = {dtype, fortran_order, shape};
}
} // namespace aare