Dev/stuff from pyctbgui (#273)

Matterhorn10 Transform 
some other Transformations from pyctbGUI 
added method get_reading_mode for easier error handling in decoders 


## TODO: 

- proper error handling for all other decoders 
- proper documentation for all other decoders 
- refactoring all other decoders to store hard coded values in a Struct
ChipSpecification

python/src/bind_Defs.hpp

@@ -0,0 +1,25 @@
+#include <pybind11/pybind11.h>
+#include <pybind11/stl.h>
+
+#include "aare/defs.hpp"
+
+namespace py = pybind11;
+using namespace aare;
+
+void define_defs_bindings(py::module &m) {
+    auto matterhorn10 = py::class_<Matterhorn10>(m, "Matterhorn10");
+    matterhorn10.attr("nRows") = Matterhorn10::nRows;
+    matterhorn10.attr("nCols") = Matterhorn10::nCols;
+
+    auto matterhorn02 = py::class_<Matterhorn02>(m, "Matterhorn02");
+    matterhorn02.attr("nRows") = Matterhorn02::nRows;
+    matterhorn02.attr("nCols") = Matterhorn02::nCols;
+    matterhorn02.attr("nHalfCols") = Matterhorn02::nHalfCols;
+
+    auto moench04 = py::class_<Moench04>(m, "Moench04");
+    moench04.attr("nRows") = Moench04::nRows;
+    moench04.attr("nCols") = Moench04::nCols;
+    moench04.attr("nPixelsPerSuperColumn") = Moench04::nPixelsPerSuperColumn;
+    moench04.attr("superColumnWidth") = Moench04::superColumnWidth;
+    moench04.attr("adcNumbers") = Moench04::adcNumbers;
+}

python/src/bind_PixelMap.hpp

@@ -33,15 +33,35 @@ void define_pixel_map_bindings(py::module &m) {
                      new NDArray<ssize_t, 2>(GenerateMoench05PixelMapOld());
                  return return_image_data(ptr);
              })
+
+        .def("GenerateMoench04AnalogPixelMap",
+             []() {
+                 auto ptr =
+                     new NDArray<ssize_t, 2>(GenerateMoench04AnalogPixelMap());
+                 return return_image_data(ptr);
+             })
+
         .def("GenerateMH02SingleCounterPixelMap",
              []() {
                  auto ptr = new NDArray<ssize_t, 2>(
                      GenerateMH02SingleCounterPixelMap());
                  return return_image_data(ptr);
              })
-        .def("GenerateMH02FourCounterPixelMap", []() {
-            auto ptr =
-                new NDArray<ssize_t, 3>(GenerateMH02FourCounterPixelMap());
-            return return_image_data(ptr);
-        });
+        .def("GenerateMH02FourCounterPixelMap",
+             []() {
+                 auto ptr =
+                     new NDArray<ssize_t, 3>(GenerateMH02FourCounterPixelMap());
+                 return return_image_data(ptr);
+             })
+
+        .def(
+            "GenerateMatterhorn10PixelMap",
+            [](const size_t dynamic_range, const size_t n_counters) {
+                auto ptr = new NDArray<ssize_t, 2>(
+                    GenerateMatterhorn10PixelMap(dynamic_range, n_counters));
+                return return_image_data(ptr);
+            },
+            py::arg("dynamic_range") = 16, py::arg("n_counters") = 1,
+            R"(
+        Generate pixel map for Matterhorn02 detector)");
 }

python/src/ctb_raw_file.hpp

@@ -139,6 +139,22 @@ void define_ctb_raw_file_io_bindings(py::module &m) {
               return output;
           });
 
+    m.def("expand4to8bit",
+          [](py::array_t<uint8_t, py::array::c_style | py::array::forcecast>
+                 &input) {
+              py::buffer_info buf = input.request();
+
+              py::array_t<uint8_t> output(buf.size * 2);
+
+              NDView<uint8_t, 1> input_view(input.mutable_data(),
+                                            {input.size()});
+              NDView<uint8_t, 1> output_view(output.mutable_data(),
+                                             {output.size()});
+
+              aare::expand4to8bit(input_view, output_view);
+              return output;
+          });
+
     m.def("decode_my302",
           [](py::array_t<uint8_t, py::array::c_style | py::array::forcecast>
                  &input,

python/src/module.cpp

@@ -9,8 +9,10 @@
 #include "bind_ClusterFinder.hpp"
 #include "bind_ClusterFinderMT.hpp"
 #include "bind_ClusterVector.hpp"
+#include "bind_Defs.hpp"
 #include "bind_Eta.hpp"
 #include "bind_Interpolator.hpp"
+#include "bind_PixelMap.hpp"
 #include "bind_RawFile.hpp"
 #include "bind_calibration.hpp"
 
@@ -20,7 +22,6 @@
 #include "fit.hpp"
 #include "jungfrau_data_file.hpp"
 #include "pedestal.hpp"
-#include "pixel_map.hpp"
 #include "raw_master_file.hpp"
 #include "raw_sub_file.hpp"
 #include "var_cluster.hpp"
@@ -140,6 +141,8 @@ PYBIND11_MODULE(_aare, m) {
     register_calculate_3x3eta<float, 3, 3, uint16_t>(m);
     register_calculate_3x3eta<int16_t, 3, 3, uint16_t>(m);
 
+    define_defs_bindings(m);
+
     using Sum_index_pair_d = Sum_index_pair<double, corner>;
     PYBIND11_NUMPY_DTYPE(Sum_index_pair_d, sum, index);
     using Sum_index_pair_f = Sum_index_pair<float, corner>;

python/src/raw_master_file.hpp

@@ -23,6 +23,16 @@ namespace py = pybind11;
 using namespace ::aare;
 
 void define_raw_master_file_bindings(py::module &m) {
+
+    py::enum_<ReadoutMode>(m, "ReadoutMode")
+        .value("ANALOG_ONLY", ReadoutMode::ANALOG_ONLY)
+        .value("DIGITAL_ONLY", ReadoutMode::DIGITAL_ONLY)
+        .value("ANALOG_AND_DIGITAL", ReadoutMode::ANALOG_AND_DIGITAL)
+        .value("TRANSCEIVER_ONLY", ReadoutMode::TRANSCEIVER_ONLY)
+        .value("DIGITAL_AND_TRANSCEIVER", ReadoutMode::DIGITAL_AND_TRANSCEIVER)
+        .value("UNKNOWN", ReadoutMode::UNKNOWN)
+        .export_values();
+
     py::class_<RawMasterFile>(m, "RawMasterFile")
         .def(py::init<const std::filesystem::path &>())
         .def("data_fname", &RawMasterFile::data_fname, R"(
@@ -81,6 +91,7 @@ void define_raw_master_file_bindings(py::module &m) {
 
         .def_property_readonly("transceiver_samples",
                                &RawMasterFile::transceiver_samples)
+        .def_property_readonly("reading_mode", &RawMasterFile::get_reading_mode)
         .def_property_readonly("number_of_rows", &RawMasterFile::number_of_rows)
         .def_property_readonly("quad", &RawMasterFile::quad)
         .def_property_readonly("scan_parameters",