moving code into aare:: namespace

file_io/include/aare/File.hpp

@@ -1,6 +1,6 @@
 #include "aare/FileInterface.hpp"
 
-
+namespace aare{
 class File {
   private:
     FileInterface *file_impl;
@@ -32,3 +32,5 @@ class File {
 
     ~File();
 };
+
+} // namespace aare

file_io/include/aare/FileFactory.hpp

@@ -4,6 +4,8 @@
 #include "aare/utils/logger.hpp"
 #include <filesystem>
 
+namespace aare{
+
 class FileFactory {
     // Class that will be used to create FileInterface objects
     // follows the factory pattern
@@ -35,3 +37,5 @@ class FileFactory {
     virtual void parse_fname(FileInterface *) = 0;
     virtual ~FileFactory() = default;
 };
+
+} // namespace aare

file_io/include/aare/FileInterface.hpp

@@ -6,6 +6,8 @@
 #include <filesystem>
 #include <vector>
 
+namespace aare {
+
 struct FileConfig {
     std::filesystem::path fname;
     aare::DType dtype = aare::DType(typeid(uint16_t));
@@ -93,3 +95,5 @@ class FileInterface {
     ssize_t m_cols{};
     ssize_t m_bitdepth{};
 };
+
+}

file_io/include/aare/NumpyFile.hpp

@@ -5,6 +5,8 @@
 #include <iostream>
 #include <numeric>
 
+namespace aare{
+
 class NumpyFile : public FileInterface {
     FILE *fp = nullptr;
     size_t initial_header_len = 0;
@@ -42,4 +44,6 @@ class NumpyFile : public FileInterface {
     size_t current_frame{};
     void get_frame_into(size_t, std::byte *);
     Frame get_frame(size_t frame_number);
-};
+};
+
+} // namespace aare

file_io/include/aare/NumpyFileFactory.hpp

@@ -4,7 +4,7 @@
 #include "aare/defs.hpp"
 #include <fstream>
 
-
+namespace aare {
 
 class NumpyFileFactory : public FileFactory {
   private:
@@ -18,4 +18,6 @@ class NumpyFileFactory : public FileFactory {
     NumpyFile* load_file_write(FileConfig) override;
     void parse_fname(FileInterface*)override{};
 
-};
+};
+
+} // namespace aare

file_io/include/aare/RawFile.hpp

@@ -4,6 +4,8 @@
 #include "aare/SubFile.hpp"
 #include "aare/defs.hpp"
 
+namespace aare {
+
 class RawFile : public FileInterface {
 
     using config = RawFileConfig;
@@ -69,4 +71,6 @@ class RawFile : public FileInterface {
     size_t current_frame{};
     void get_frame_into(size_t frame_number, std::byte *image_buf);
     Frame get_frame(size_t frame_number);
-};
+};
+
+}

file_io/include/aare/RawFileFactory.hpp

@@ -1,5 +1,8 @@
 #include "aare/FileFactory.hpp"
 #include "aare/RawFile.hpp"
+
+namespace aare {
+
 class RawFileFactory : public FileFactory {
   private:
     void parse_json_metadata(RawFile *file);
@@ -16,3 +19,5 @@ class RawFileFactory : public FileFactory {
     sls_detector_header read_header(const std::filesystem::path &fname);
     void find_geometry(FileInterface *);
 };
+
+}

file_io/include/aare/SubFile.hpp

@@ -5,6 +5,8 @@
 #include <map>
 #include <variant>
 
+namespace aare {
+
 class SubFile {
   protected:
     FILE *fp = nullptr;
@@ -42,3 +44,5 @@ class SubFile {
     inline size_t bytes_per_part() { return (m_bitdepth / 8) * m_rows * m_cols; }
     inline size_t pixels_per_part() { return m_rows * m_cols; }
 };
+
+} // namespace aare

file_io/include/aare/helpers.hpp

@@ -4,5 +4,8 @@
 #include <filesystem>
 #include <fmt/core.h>
 
+namespace aare {
+
 bool is_master_file(std::filesystem::path fpath);
 
+}