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JFCalibration/JFMC_CurrentSourceScan.cpp

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C++
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// file to take current source scan files, analyse and plot them.
#include "/afs/psi.ch/project/mythen/sophie/sls_detector_calibration/jungfrauCommonHeader.h"
#include "/afs/psi.ch/project/mythen/sophie/sls_detector_calibration/jungfrauCommonFunctions.h"
#include "/afs/psi.ch/project/mythen/sophie/sls_detector_calibration/jungfrauFile.C"
#include "/afs/psi.ch/project/mythen/sophie/sls_detector_calibration/jungfrauPedestal.C"
#include "/afs/psi.ch/project/mythen/sophie/sls_detector_calibration/jungfrauPixelMask.C"
#include "TGraph.h"
#include "TGraphErrors.h"
#include "TF1.h"
#include "TFile.h"
#include "TPaveStats.h"
#include "TLegend.h"
#include <algorithm>
#include <sstream>
int main(int argc, char* argv[]) {
jungfrauStyle();
gROOT->SetBatch(1);
gStyle->SetOptFit(11);
if (argc != 4) {
cout << "Correct usage:" << endl;
cout << "arg 1: specify module number" << endl;
cout << "arg 2: specify data location" << endl;
cout << "arg 3: specify data file" << endl;
cout << "eg: ./JFMC_CurrentSourceScan 006 ..." << endl;
cout << " " << endl;
exit(1);
}
string module_str = argv[1];
string data_loc = argv[2];
string data_file = argv[3];
jungfrauFile *thisfile = new jungfrauFile();
char savename[128];
sprintf(savename,"%s/%s_%%6.6d.dat", data_loc.c_str(), data_file.c_str());
thisfile->open((char*)savename, 0);
TH2F *gainmap_all = new TH2F("gainmap_all","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F *adcmap_all = new TH2F("adcmap_all","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F *gainmap_sel = new TH2F("gainmap_sel","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F *adcmap_sel = new TH2F("adcmap_sel","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH1F *gain_avg = new TH1F("gain_avg","",100,-1,4);
TH2F *gainmap_avg = new TH2F("gainmap_avg","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH1F *adc_avg_g1 = new TH1F("adc_avg_g1","",100,0,17000);
TH1F *adc_avg_g2 = new TH1F("adc_avg_g2","",100,0,17000);
TH2F *adcmap_avg_g1 [35];
TH2F *adcmap_avg_g2 [35];
TH2F *adcermap_avg_g1 [35];
TH2F *adcermap_avg_g2 [35];
for(int i = 0; i < 35; i++) {
ostringstream histogramNameStreamg1;
histogramNameStreamg1 << "adcmap_avg_g1_" << i;
adcmap_avg_g1[i] = new TH2F(histogramNameStreamg1.str().c_str(),"",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
ostringstream histogramNameStreamg2;
histogramNameStreamg2 << "adcmap_avg_g2_" << i;
adcmap_avg_g2[i] = new TH2F(histogramNameStreamg2.str().c_str(),"",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
ostringstream histogramNameStreamg3;
histogramNameStreamg3 << "adcermap_avg_g1_" << i;
adcermap_avg_g1[i] = new TH2F(histogramNameStreamg3.str().c_str(),"",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
ostringstream histogramNameStreamg4;
histogramNameStreamg4 << "adcermap_avg_g2_" << i;
adcermap_avg_g2[i] = new TH2F(histogramNameStreamg4.str().c_str(),"",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
}
jungfrauPedestal *pedestalObject = new jungfrauPedestal();
pedestalObject->pedestalSetNFrames(640);
TH2F* pedestalsG0 = new TH2F("pedestalsG0","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F* pedestalsG1 = new TH2F("pedestalsG1","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F* pedestalsG2 = new TH2F("pedestalsG2","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F* pedeRMSG0 = new TH2F("pedeRMSG0","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F* pedeRMSG1 = new TH2F("pedeRMSG1","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F* pedeRMSG2 = new TH2F("pedeRMSG2","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
jungfrauPixelMask *pixelMaskObject = new jungfrauPixelMask();
static int pixel_mask [NCH];
pixelMaskObject->initialisePixelMask(pixel_mask);
if (module_str == "032") {
pixelMaskObject->maskChip(2,pixel_mask);
pixelMaskObject->maskChip(3,pixel_mask);
pixelMaskObject->maskChip(4,pixel_mask);
} else if (module_str == "006") {
pixelMaskObject->maskChip(6, pixel_mask);
pixelMaskObject->maskSupercolumn(4,1, pixel_mask);
pixelMaskObject->maskSupercolumn(4,2, pixel_mask);
}
static TH1I *adc_histos_g1 [NCH];
static TH1I *adc_histos_g2 [NCH];
static TH1I *gain_histos [NCH];
for(int i = 0; i < NCH; i++) {
ostringstream histogramNameStreamg1;
histogramNameStreamg1 << "adc_histos_g1_" << i;
adc_histos_g1[i] = new TH1I(histogramNameStreamg1.str().c_str(),"",100,0,17000);
ostringstream histogramNameStreamg2;
histogramNameStreamg2 << "adc_histos_g2_" << i;
adc_histos_g2[i] = new TH1I(histogramNameStreamg2.str().c_str(),"",100,0,17000);
ostringstream histogramNameStream2;
histogramNameStream2 << "gain_histos_" << i;
gain_histos[i] = new TH1I(histogramNameStream2.str().c_str(),"",4,-0.5,3.5);
}
double filter[35];
if (module_str == "044") {
for (int i = 0; i < 5; i++) {
filter[i] = 0.05+(i*0.05);
}
for (int i = 0; i < 9; i++) {
filter[i+5] = 0.5+(i*0.25);
}
for (int i = 0; i < 17; i++) {
filter[i+5+9] = 5.+(i*2.5);
}
} else {
for (int i = 0; i < 9; i++) {
filter[i] = 0.05+(i*0.025);
}
for (int i = 0; i < 9; i++) {
filter[i+9] = 0.5+(i*0.25);
}
for (int i = 0; i < 17; i++) {
filter[i+9+9] = 5.+(i*2.5);
}
}
double pede_ene[1];
pede_ene[0] = 0.01;
TCanvas *c1 = new TCanvas("c1","");
// calculate pixel mask
for (int i = 0; i < 640; i++) {
thisfile->readNextFrame();
pixelMaskObject->maskIfGainNot(0, thisfile->getFrameDataHandle(), (int*)(&pixel_mask));
}
for (int i = 0; i < 640; i++) {
thisfile->readNextFrame();
pixelMaskObject->maskIfGainNot(1, thisfile->getFrameDataHandle(), (int*)(&pixel_mask));
}
for (int i = 0; i < 640; i++) {
thisfile->readNextFrame();
pixelMaskObject->maskIfGainNot(3, thisfile->getFrameDataHandle(), (int*)(&pixel_mask));
}
thisfile->rewind();
sprintf(savename,"plots/M%s/CurrentSource/pixelmask.png", module_str.c_str());
pixelMaskObject->plotPixelMask(pixel_mask,savename);
cout << "after chip mask, n masked pixels is " << pixelMaskObject->getNMasked(pixel_mask) << endl;
// calculate pedestals
for (int j = 0; j < 640; j++) {
thisfile->readNextFrame();
pedestalObject->addFrameToPedestalCalculation(thisfile->getFrameDataHandle());
}
for (int i = 0; i < NCH; i++) {
if (pixel_mask[i] == 1) {
pedestalsG0->Fill(i%NC,i/NC,pedestalObject->pedestalOfChannel(i));
pedeRMSG0->Fill(i%NC,i/NC,pedestalObject->rmsOfChannel(i));
}
}
pedestalObject->pedestalClear();
for (int j = 0; j < 640; j++) {
thisfile->readNextFrame();
pedestalObject->addFrameToPedestalCalculation(thisfile->getFrameDataHandle());
}
for (int i = 0; i < NCH; i++) {
if (pixel_mask[i] == 1) {
pedestalsG1->Fill(i%NC,i/NC,pedestalObject->pedestalOfChannel(i));
pedeRMSG1->Fill(i%NC,i/NC,pedestalObject->rmsOfChannel(i));
}
}
pedestalObject->pedestalClear();
for (int j = 0; j < 640; j++) {
thisfile->readNextFrame();
pedestalObject->addFrameToPedestalCalculation(thisfile->getFrameDataHandle());
}
for (int i = 0; i < NCH; i++) {
if (pixel_mask[i] == 1) {
pedestalsG2->Fill(i%NC,i/NC,pedestalObject->pedestalOfChannel(i));
pedeRMSG2->Fill(i%NC,i/NC,pedestalObject->rmsOfChannel(i));
}
}
pedestalObject->pedestalClear();
thisfile->close();
TCanvas *mapcanvas = new TCanvas("mapcanvas","",150,10,800,400);
mapcanvas->SetLeftMargin(0.1);
mapcanvas->SetRightMargin(0.13);
mapcanvas->SetTopMargin(0.08);
mapcanvas->SetBottomMargin(0.15);
pedestalsG0->GetXaxis()->SetTitle("Column");
pedestalsG0->GetYaxis()->SetTitle("Row");
pedestalsG0->GetYaxis()->SetTitleOffset(0.7);
pedestalsG0->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/pedeG0.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
pedestalsG1->GetXaxis()->SetTitle("Column");
pedestalsG1->GetYaxis()->SetTitle("Row");
pedestalsG1->GetYaxis()->SetTitleOffset(0.7);
pedestalsG1->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/pedeG1.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
pedestalsG2->GetXaxis()->SetTitle("Column");
pedestalsG2->GetYaxis()->SetTitle("Row");
pedestalsG2->GetYaxis()->SetTitleOffset(0.7);
pedestalsG2->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/pedeG2.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
pedeRMSG0->GetXaxis()->SetTitle("Column");
pedeRMSG0->GetYaxis()->SetTitle("Row");
pedeRMSG0->GetYaxis()->SetTitleOffset(0.7);
pedeRMSG0->GetZaxis()->SetRangeUser(0,25);
pedeRMSG0->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/pedeRMSG0.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
pedeRMSG1->GetXaxis()->SetTitle("Column");
pedeRMSG1->GetYaxis()->SetTitle("Row");
pedeRMSG1->GetYaxis()->SetTitleOffset(0.7);
if (module_str == "006") {
pedeRMSG1->GetZaxis()->SetRangeUser(0,400);
} else if (module_str == "008" || module_str == "021" || module_str == "022" || module_str == "032" || module_str == "044") {
pedeRMSG1->GetZaxis()->SetRangeUser(0,15);
}
pedeRMSG1->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/pedeRMSG1.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
pedeRMSG2->GetXaxis()->SetTitle("Column");
pedeRMSG2->GetYaxis()->SetTitle("Row");
pedeRMSG2->GetYaxis()->SetTitleOffset(0.7);
if (module_str == "006") {
pedeRMSG2->GetZaxis()->SetRangeUser(0,400);
} else if (module_str == "008" || module_str == "021" || module_str == "022" || module_str == "032" || module_str == "044") {
pedeRMSG2->GetZaxis()->SetRangeUser(0,15);
}
pedeRMSG2->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/pedeRMSG2.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
int frame_counter = 0;
int j = 0;
int nfiles = 0;
if (module_str == "032" || module_str == "021" || module_str == "022") {
nfiles = 2;
} else if (module_str == "006" || module_str == "008" || module_str == "044") {
nfiles = 3;
}
for (int filei = 0; filei < nfiles; filei++) {
sprintf(savename,"%s/%s_%%6.6d.dat", data_loc.c_str(), data_file.c_str());
thisfile->open((char*)savename, filei);
if (filei == 0) {
for (int k = 0; k < (640*3); k++) {
thisfile->readNextFrame();
frame_counter++;
}
}
while (thisfile->readNextFrame()) {
frame_counter++;
j++;
uint16_t* imagedptr = thisfile->getFrameDataHandle();
for (int i = 0; i < NCH; i++) {
if ((j-1) < 10 || (j > 8075 && j < 8085)) {
if (pixel_mask[i] == 1) {
uint16_t adc = imagedptr[i]&0x3fff;
uint16_t gain = (imagedptr[i]&0xc000) >> 14;
adcmap_all->Fill(i%NC,i/NC,adc);
gainmap_all->Fill(i%NC,i/NC,gain);
}
}
if (((i/NC <= 255) && (i%64 == (j-1)%64)) ||
((i/NC >= 256) &&((-1*(i-524287))%64 == (j-1)%64))) {
if (pixel_mask[i] == 1) {
uint16_t adc = imagedptr[i]&0x3fff;
uint16_t gain = (imagedptr[i]&0xc000) >> 14;
gain_histos[i]->Fill(gain);
if (gain == 1) {
adc_histos_g1[i]->Fill(adc);
} else if (gain == 3) {
adc_histos_g2[i]->Fill(adc);
}
if ((j-1) < 10 || (j > 8075 && j < 8085)) {
adcmap_sel->Fill(i%NC,i/NC,adc);
gainmap_sel->Fill(i%NC,i/NC,gain);
}
}
}
}
if ((j-1) < 10 || (j > 8075 && j < 8085)) {
mapcanvas->cd();
adcmap_sel->GetXaxis()->SetTitle("Column");
adcmap_sel->GetYaxis()->SetTitle("Row");
adcmap_sel->GetYaxis()->SetTitleOffset(0.7);
adcmap_sel->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/adcmap_%i_sel.png", module_str.c_str(), j-1);
mapcanvas->SaveAs((const char *)(savename));
adcmap_all->GetXaxis()->SetTitle("Column");
adcmap_all->GetYaxis()->SetTitle("Row");
adcmap_all->GetYaxis()->SetTitleOffset(0.7);
adcmap_all->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/adcmap_%i_all.png", module_str.c_str(), j-1);
mapcanvas->SaveAs((const char *)(savename));
gainmap_sel->GetXaxis()->SetTitle("Column");
gainmap_sel->GetYaxis()->SetTitle("Row");
gainmap_sel->GetYaxis()->SetTitleOffset(0.7);
gainmap_sel->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/gainmap_%i_sel.png", module_str.c_str(), j-1);
mapcanvas->SaveAs((const char *)(savename));
gainmap_all->GetXaxis()->SetTitle("Column");
gainmap_all->GetYaxis()->SetTitle("Row");
gainmap_all->GetYaxis()->SetTitleOffset(0.7);
gainmap_all->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/gainmap_%i_all.png", module_str.c_str(), j-1);
mapcanvas->SaveAs((const char *)(savename));
adcmap_sel->Reset();
adcmap_all->Reset();
gainmap_sel->Reset();
gainmap_all->Reset();
}
// catch the last frame (bad ctrl-c exit)
int last_frame = 0;
if (module_str == "032" || module_str == "021" || module_str == "022") {
last_frame = 19199;
} else if (module_str == "006" || module_str == "008" || module_str == "044") {
last_frame = 24319;
}
if (j%640 == 0 || j == last_frame) {
if (j == last_frame) {
j = last_frame+1;
}
for (int i = 0; i < NCH; i++) {
if (pixel_mask[i] == 1) {
gainmap_avg->Fill(i%NC,i/NC,gain_histos[i]->GetMean());
adcmap_avg_g1[j/640-1]->Fill(i%NC,i/NC,adc_histos_g1[i]->GetMean());
adcermap_avg_g1[j/640-1]->Fill(i%NC,i/NC,adc_histos_g1[i]->GetMeanError());
adcmap_avg_g2[j/640-1]->Fill(i%NC,i/NC,adc_histos_g2[i]->GetMean());
adcermap_avg_g2[j/640-1]->Fill(i%NC,i/NC,adc_histos_g2[i]->GetMeanError());
if (gain_histos[i]->GetEntries() > 0) {
gain_avg->Fill(gain_histos[i]->GetMean());
}
if (adc_histos_g1[i]->GetEntries() > 0) {
adc_avg_g1->Fill(adc_histos_g1[i]->GetMean());
}
if (adc_histos_g2[i]->GetEntries() > 0) {
adc_avg_g2->Fill(adc_histos_g2[i]->GetMean());
}
gain_histos[i]->Reset();
adc_histos_g1[i]->Reset();
adc_histos_g2[i]->Reset();
}
}
c1->cd();
gain_avg->GetXaxis()->SetTitle("Average gain");
gain_avg->GetXaxis()->SetTitleOffset(1.1);
gain_avg->GetYaxis()->SetTitleOffset(1.5);
gain_avg->Draw();
sprintf(savename,"plots/M%s/CurrentSource/perStep/gain_avg_%i.png", module_str.c_str(), j/640);
c1->SaveAs((const char *)(savename));
mapcanvas->cd();
gainmap_avg->GetXaxis()->SetTitle("Column");
gainmap_avg->GetYaxis()->SetTitle("Row");
gainmap_avg->GetYaxis()->SetTitleOffset(0.7);
gainmap_avg->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/perStep/gainmap_avg_%i.png", module_str.c_str(), j/640);
mapcanvas->SaveAs((const char *)(savename));
c1->cd();
adc_avg_g1->GetXaxis()->SetTitle("Average G1 ADC");
adc_avg_g1->GetXaxis()->SetTitleOffset(1.1);
adc_avg_g1->GetYaxis()->SetTitleOffset(1.5);
adc_avg_g1->Draw();
sprintf(savename,"plots/M%s/CurrentSource/perStep/adc_avg_g1_%i.png", module_str.c_str(), j/640);
c1->SaveAs((const char *)(savename));
mapcanvas->cd();
adcmap_avg_g1[j/640-1]->GetXaxis()->SetTitle("Column");
adcmap_avg_g1[j/640-1]->GetYaxis()->SetTitle("Row");
adcmap_avg_g1[j/640-1]->GetYaxis()->SetTitleOffset(0.7);
adcmap_avg_g1[j/640-1]->Draw("colz");
mapcanvas->Update();
sprintf(savename,"plots/M%s/CurrentSource/perStep/adcmap_avg_g1_%i.png", module_str.c_str(), j/640);
mapcanvas->SaveAs((const char *)(savename));
adcermap_avg_g1[j/640-1]->GetXaxis()->SetTitle("Column");
adcermap_avg_g1[j/640-1]->GetYaxis()->SetTitle("Row");
adcermap_avg_g1[j/640-1]->GetYaxis()->SetTitleOffset(0.7);
adcermap_avg_g1[j/640-1]->Draw("colz");
mapcanvas->Update();
sprintf(savename,"plots/M%s/CurrentSource/perStep/adcermap_avg_g1_%i.png", module_str.c_str(), j/640);
mapcanvas->SaveAs((const char *)(savename));
c1->cd();
adc_avg_g2->GetXaxis()->SetTitle("Average G2 ADC");
adc_avg_g2->GetXaxis()->SetTitleOffset(1.1);
adc_avg_g2->GetYaxis()->SetTitleOffset(1.5);
adc_avg_g2->Draw();
sprintf(savename,"plots/M%s/CurrentSource/perStep/adc_avg_g2_%i.png", module_str.c_str(), j/640);
c1->SaveAs((const char *)(savename));
mapcanvas->cd();
adcmap_avg_g2[j/640-1]->GetXaxis()->SetTitle("Column");
adcmap_avg_g2[j/640-1]->GetYaxis()->SetTitle("Row");
adcmap_avg_g2[j/640-1]->GetYaxis()->SetTitleOffset(0.7);
adcmap_avg_g2[j/640-1]->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/perStep/adcmap_avg_g2_%i.png", module_str.c_str(), j/640);
mapcanvas->SaveAs((const char *)(savename));
adcermap_avg_g2[j/640-1]->GetXaxis()->SetTitle("Column");
adcermap_avg_g2[j/640-1]->GetYaxis()->SetTitle("Row");
adcermap_avg_g2[j/640-1]->GetYaxis()->SetTitleOffset(0.7);
adcermap_avg_g2[j/640-1]->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/perStep/adcermap_avg_g2_%i.png", module_str.c_str(), j/640);
mapcanvas->SaveAs((const char *)(savename));
gain_avg->Reset();
gainmap_avg->Reset();
adc_avg_g1->Reset();
adc_avg_g2->Reset();
}
} // end of while
thisfile->close();
} // end of files
for (int i = 0; i < NCH; i++) {
delete gain_histos[i];
delete adc_histos_g1[i];
delete adc_histos_g2[i];
}
cout << "frame_counter " << frame_counter << endl;
TH2F *g1map = new TH2F("g1map","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F *g1ermap = new TH2F("g1ermap","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F *g2map = new TH2F("g2map","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F *g2ermap = new TH2F("g2ermap","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F *g1overg2map = new TH2F("g1overg2map","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F *g1overg2ermap = new TH2F("g1overg2ermap","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F *diffFromLinG1map = new TH2F("diffFromLinG1map","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH2F *diffFromLinG2map = new TH2F("diffFromLinG2map","",NC,-0.5,NC-0.5,NR,-0.5,NR-0.5);
TH1F *g1hist = 0;
if (module_str == "032") {
g1hist = new TH1F("g1hist","",100,-12000,-4000);
} else if (module_str == "022" || module_str == "021" || module_str == "006" || module_str == "008" || module_str == "044") {
g1hist = new TH1F("g1hist","",100,-3000,0);
}
TH1F *g1erhist = new TH1F("g1erhist","",100,0,50);
TH1F *g2hist = 0;
if (module_str == "032") {
g2hist = new TH1F("g2hist","",100,-1000,-200);
} else if (module_str == "022" || module_str == "021" || module_str == "006" || module_str == "008" || module_str == "044") {
g2hist = new TH1F("g2hist","",100,-300,0);
}
TH1F *g2erhist = new TH1F("g2erhist","",100,0,10);
TH1F *g1overg2hist = new TH1F("g1overg2hist","",100,11,15);
TH1F *g1overg2erhist = new TH1F("g1overg2erhist","",100,0,1);
TH1F *diffFromLinG1hist = new TH1F("diffFromLinG1hist","",100,-0.05,0.05);
TH1F *diffFromLinG2hist = new TH1F("diffFromLinG2hist","",100,-0.1,0.1);
TH1F *g1overg2_isEdge = new TH1F("g1overg2_isEdge","",100,11,15);
TH1F *g1overg2_isInnerEdge = new TH1F("g1overg2_isInnerEdge","",100,11,15);
TH1F *g1overg2_isDouble = new TH1F("g1overg2_isDouble","",100,11,15);
TH1F *g1overg2_isNextToDouble = new TH1F("g1overg2_isNextToDouble","",100,11,15);
TH1F *g1overg2_isQuad = new TH1F("g1overg2_isQuad","",100,11,15);
TH1F *g1overg2_isBulk = new TH1F("g1overg2_isBulk","",100,11,15);
for (int i = 0; i < NCH; i++) {
if (pixel_mask[i] == 1) {
vector<double> r1_adc;
vector<double> r1_filter;
vector<double> r1_adcerr;
vector<double> r1_ferr;
vector<double> r3_adc;
vector<double> r3_filter;
vector<double> r3_adcerr;
vector<double> r3_ferr;
// filter out points at zero and points with 0 error (mean taken from one entry in hist)
int m_max = 0;
if (module_str == "032" || module_str == "021" || module_str == "022" || module_str == "044") {
m_max = 27;
} else if (module_str == "006" || module_str == "008") {
m_max = 35;
}
for (int m = 0; m < m_max; m++) {
if (adcmap_avg_g1[m]->GetBinContent((i%NC)+1,(i/NC)+1) != 0 && adcermap_avg_g1[m]->GetBinContent((i%NC)+1,(i/NC)+1) != 0) {
r1_adc.push_back(adcmap_avg_g1[m]->GetBinContent((i%NC)+1,(i/NC)+1));
r1_filter.push_back(filter[m]);
r1_adcerr.push_back(adcermap_avg_g1[m]->GetBinContent((i%NC)+1,(i/NC)+1));
r1_ferr.push_back(0.);
}
if (adcmap_avg_g2[m]->GetBinContent((i%NC)+1,(i/NC)+1) != 0 && adcermap_avg_g2[m]->GetBinContent((i%NC)+1,(i/NC)+1) != 0) {
r3_adc.push_back(adcmap_avg_g2[m]->GetBinContent((i%NC)+1,(i/NC)+1));
r3_filter.push_back(filter[m]);
r3_adcerr.push_back(adcermap_avg_g2[m]->GetBinContent((i%NC)+1,(i/NC)+1));
r3_ferr.push_back(0.);
}
}
if (r1_adc.size() > 1 && r3_adc.size() > 1) {
double this_pede_val1[1] = {pedestalsG1->GetBinContent((i%NC)+1,(i/NC)+1)};
double this_pede_val2[1] = {pedestalsG2->GetBinContent((i%NC)+1,(i/NC)+1)};
TGraph *grap_p1 = new TGraph(1,pede_ene,this_pede_val1);
TGraph *grap_p2 = new TGraph(1,pede_ene,this_pede_val2);
TGraphErrors *grap_g1 = new TGraphErrors(r1_adc.size(),&(r1_filter[0]),&(r1_adc[0]),&(r1_ferr[0]),&(r1_adcerr[0]));
TGraphErrors *grap_g2 = new TGraphErrors(r3_adc.size(),&(r3_filter[0]),&(r3_adc[0]),&(r3_ferr[0]),&(r3_adcerr[0]));
double rangemin2 = 0;
if (module_str == "032") {
rangemin2 = 0.75;
} else if (module_str == "006") {
rangemin2 = 0.075;
} else if (module_str == "008" || module_str == "021" || module_str == "022" || module_str == "044") {
rangemin2 = *min_element(r1_filter.begin(),r1_filter.end());
}
double rangemax2 = *max_element(r1_filter.begin(),r1_filter.end());
TF1 *fit2 = new TF1("fit2","[0]+[1]*x",rangemin2,rangemax2);
fit2->SetParameter(0, 10000.);
fit2->SetParameter(1, -0.1);
fit2->SetLineColor(kGreen+2);
fit2->SetParName(0,"G1 const");
fit2->SetParName(1,"G1 grad");
grap_g1->Fit(fit2,"QR","");
g1hist->Fill(fit2->GetParameter(1));
g1map->Fill(i%NC,i/NC,fit2->GetParameter(1));
g1erhist->Fill(fit2->GetParError(1));
g1ermap->Fill(i%NC,i/NC,fit2->GetParError(1));
double g1residsum = 0.;
double g1residn = 0.;
for (size_t it = 0; it < r1_adc.size(); it++) {
if (r1_filter[it] >= rangemin2) {
diffFromLinG1hist->Fill((r1_adc[it] - fit2->Eval(r1_filter[it])) / r1_adc[it]);
g1residsum = g1residsum + ((r1_adc[it] - fit2->Eval(r1_filter[it])) / r1_adc[it]);
g1residn = g1residn + 1.;
}
}
diffFromLinG1map->Fill(i%NC,i/NC,g1residsum/g1residn);
double rangemin3 = 0;
if (module_str == "032") {
rangemin3 = 5;
} else if (module_str == "006" || module_str == "008" || module_str == "021" || module_str == "022" || module_str == "044") {
rangemin3 = *min_element(r3_filter.begin(),r3_filter.end());
}
double rangemax3 = *max_element(r3_filter.begin(),r3_filter.end());
TF1 *fit3 = new TF1("fit3","[0]+[1]*x",rangemin3, rangemax3);
fit3->SetParameter(0, 10000.);
fit3->SetParameter(1, -0.01);
fit3->SetLineColor(kRed);
fit3->SetParName(0,"G2 const");
fit3->SetParName(1,"G2 grad");
grap_g2->Fit(fit3,"QR+","");
g2hist->Fill(fit3->GetParameter(1));
g2map->Fill(i%NC,i/NC,fit3->GetParameter(1));
g2erhist->Fill(fit3->GetParError(1));
g2ermap->Fill(i%NC,i/NC,fit3->GetParError(1));
double g2residsum = 0.;
double g2residn = 0.;
for (size_t it = 0; it < r3_adc.size(); it++) {
diffFromLinG2hist->Fill((r3_adc[it] - fit3->Eval(r3_filter[it])) / r3_adc[it]);
g2residsum = g2residsum + ((r3_adc[it] - fit3->Eval(r3_filter[it])) / r3_adc[it]);
g2residn = g2residn + 1.;
}
diffFromLinG2map->Fill(i%NC,i/NC,g2residsum/g2residn);
g1overg2hist->Fill(fit2->GetParameter(1) / fit3->GetParameter(1));
g1overg2erhist->Fill(abs(fit2->GetParameter(1)/fit3->GetParameter(1))*sqrt(pow((fit2->GetParError(1)/fit2->GetParameter(1)),2) + pow((fit3->GetParError(1)/fit3->GetParameter(1)),2)));
g1overg2map->Fill(i%NC,i/NC,fit2->GetParameter(1) / fit3->GetParameter(1));
g1overg2ermap->Fill(i%NC,i/NC,abs(fit2->GetParameter(1)/fit3->GetParameter(1))*sqrt(pow((fit2->GetParError(1)/fit2->GetParameter(1)),2) + pow((fit3->GetParError(1)/fit3->GetParameter(1)),2)));
if (isEdge(i)) {
g1overg2_isEdge->Fill(fit2->GetParameter(1) / fit3->GetParameter(1));
}
if (isInnerEdge(i)) {
g1overg2_isInnerEdge->Fill(fit2->GetParameter(1) / fit3->GetParameter(1));
}
if (isDouble(i)) {
g1overg2_isDouble->Fill(fit2->GetParameter(1) / fit3->GetParameter(1));
}
if (isNextToDouble(i)) {
g1overg2_isNextToDouble->Fill(fit2->GetParameter(1) / fit3->GetParameter(1));
}
if (isQuad(i)) {
g1overg2_isQuad->Fill(fit2->GetParameter(1) / fit3->GetParameter(1));
}
if (isBulk(i)) {
g1overg2_isBulk->Fill(fit2->GetParameter(1) / fit3->GetParameter(1));
}
if ((i >= 58000 && i < 58000+10) || // bulk
(i >= 10 && i < 10+10) || // edge
(i >= 1024+10 && i < 1024+10+10) || // inner edge
(i >= (256*1024)+10 && i < (256*1024)+10+10) || // double
(i >= (257*1024)+10 && i < (257*1024)+10+10) || // next to double
(i == (255*1024)+255) // quad
) {
string pixel_type = "x";
if (i >= 58000 && i < 58000+10) {
pixel_type = "b";
} else if (i >= 10 && i < 10+10) {
pixel_type = "e";
} else if (i >= 1024+10 && i < 1024+10+10) {
pixel_type = "ie";
} else if (i >= (256*1024)+10 && i < (256*1024)+10+10) {
pixel_type = "d";
} else if (i >= (257*1024)+10 && i < (257*1024)+10+10) {
pixel_type = "ntd";
} else if (i == (255*1024)+255) {
pixel_type = "q";
}
mapcanvas->SetLeftMargin(0.13);
mapcanvas->SetRightMargin(0.05);
grap_p1->SetMarkerColor(kGreen+2);
grap_p2->SetMarkerColor(kRed);
grap_p1->SetMarkerStyle(20);
grap_p2->SetMarkerStyle(20);
grap_g1->SetMarkerStyle(20);
grap_g2->SetMarkerStyle(20);
grap_g1->SetMarkerColor(kGreen+2);
grap_g2->SetMarkerColor(kRed);
grap_g1->SetLineColor(kGreen+2);
grap_g2->SetLineColor(kRed);
TF1 *fit2_e = new TF1("fit2_e","[0]+[1]*x",0.009,1.1E3);
TF1 *fit3_e = new TF1("fit3_e","[0]+[1]*x",0.009,1.1E3);
fit2_e->SetParameters(fit2->GetParameter(0),fit2->GetParameter(1));
fit2_e->SetLineColor(kGreen+2);
fit2_e->SetLineStyle(2);
fit3_e->SetParameters(fit3->GetParameter(0),fit3->GetParameter(1));
fit3_e->SetLineColor(kRed);
fit3_e->SetLineStyle(2);
grap_g1->GetXaxis()->SetLimits(0.009,1.1E2);
grap_g1->SetMinimum(0);
grap_g1->SetMaximum(20000);
grap_g1->GetXaxis()->SetTitle("Integration time [#mus]");
grap_g1->GetYaxis()->SetTitle("ADC [ADU]");
grap_g1->GetYaxis()->SetTitleOffset(0.9);
grap_g1->Draw("AP");
fit2->Draw("same");
mapcanvas->Update();
TPaveStats *st0 = (TPaveStats*)grap_g1->FindObject("stats");
st0->SetX1NDC(0.2);
st0->SetX2NDC(0.54);
st0->SetY1NDC(0.71);
st0->SetY2NDC(0.90);
st0->SetBorderSize(0);
st0->SetTextColor(kGreen+2);
grap_g2->Draw("P");
fit3->Draw("same");
mapcanvas->Update();
TPaveStats *st1 = (TPaveStats*)grap_g2->FindObject("stats");
st1->SetX1NDC(0.6);
st1->SetX2NDC(0.94);
st1->SetY1NDC(0.71);
st1->SetY2NDC(0.90);
st1->SetBorderSize(0);
st1->SetTextColor(kRed);
fit2_e->Draw("same");
fit3_e->Draw("same");
grap_p1->Draw("P");
grap_p2->Draw("P");
mapcanvas->SetLogx();
sprintf(savename,"plots/M%s/CurrentSource/pixel_%s_%d.png", module_str.c_str(), pixel_type.c_str(), i);
mapcanvas->SaveAs((const char *)(savename));
mapcanvas->SetLogx(0);
mapcanvas->SetLeftMargin(0.1);
mapcanvas->SetRightMargin(0.13);
delete fit2_e;
delete fit3_e;
}
delete grap_g1;
delete grap_g2;
delete grap_p1;
delete grap_p2;
delete fit2;
delete fit3;
}
}
}
c1->cd();
g1hist->GetXaxis()->SetTitle("G1 gradient");
g1hist->GetXaxis()->SetTitleOffset(1.1);
g1hist->GetYaxis()->SetTitleOffset(1.5);
g1hist->Draw();
sprintf(savename,"plots/M%s/CurrentSource/g1hist.png", module_str.c_str());
c1->SaveAs((const char *)(savename));
g2hist->GetXaxis()->SetTitle("G2 gradient");
g2hist->GetXaxis()->SetTitleOffset(1.1);
g2hist->GetYaxis()->SetTitleOffset(1.5);
g2hist->Draw();
sprintf(savename,"plots/M%s/CurrentSource/g2hist.png", module_str.c_str());
c1->SaveAs((const char *)(savename));
g1overg2hist->GetXaxis()->SetTitle("G1 / G2");
g1overg2hist->GetXaxis()->SetTitleOffset(1.1);
g1overg2hist->GetYaxis()->SetTitleOffset(1.5);
g1overg2hist->Draw();
sprintf(savename,"plots/M%s/CurrentSource/g1overg2hist.png", module_str.c_str());
c1->SaveAs((const char *)(savename));
g1overg2erhist->GetXaxis()->SetTitle("G1 / G2 uncert");
g1overg2erhist->GetXaxis()->SetTitleOffset(1.1);
g1overg2erhist->GetYaxis()->SetTitleOffset(1.5);
g1overg2erhist->Draw();
sprintf(savename,"plots/M%s/CurrentSource/g1overg2erhist.png", module_str.c_str());
c1->SaveAs((const char *)(savename));
g1erhist->GetXaxis()->SetTitle("Fitted G1 uncert");
g1erhist->GetXaxis()->SetTitleOffset(1.1);
g1erhist->GetYaxis()->SetTitleOffset(1.5);
g1erhist->Draw();
sprintf(savename,"plots/M%s/CurrentSource/g1erhist.png", module_str.c_str());
c1->SaveAs((const char *)(savename));
g2erhist->GetXaxis()->SetTitle("Fitted G2 uncert");
g2erhist->GetXaxis()->SetTitleOffset(1.1);
g2erhist->GetYaxis()->SetTitleOffset(1.5);
g2erhist->Draw();
sprintf(savename,"plots/M%s/CurrentSource/g2erhist.png", module_str.c_str());
c1->SaveAs((const char *)(savename));
diffFromLinG1hist->GetXaxis()->SetTitle("Normalised residual G1");
diffFromLinG1hist->GetYaxis()->SetTitle("");
diffFromLinG1hist->GetXaxis()->SetTitleOffset(1.1);
diffFromLinG1hist->GetYaxis()->SetTitleOffset(1.5);
diffFromLinG1hist->Draw();
sprintf(savename,"plots/M%s/CurrentSource/diffFromLinG1hist.png", module_str.c_str());
c1->SaveAs((const char *)(savename));
diffFromLinG2hist->GetXaxis()->SetTitle("Normalised residual G2");
diffFromLinG2hist->GetYaxis()->SetTitle("");
diffFromLinG2hist->GetXaxis()->SetTitleOffset(1.1);
diffFromLinG2hist->GetYaxis()->SetTitleOffset(1.5);
diffFromLinG2hist->Draw();
sprintf(savename,"plots/M%s/CurrentSource/diffFromLinG2hist.png", module_str.c_str());
c1->SaveAs((const char *)(savename));
cout << "G1 underflow " << diffFromLinG1hist->GetBinContent(0) << endl;
cout << "G2 underflow " << diffFromLinG2hist->GetBinContent(0) << endl;
cout << "G1 overflow " << diffFromLinG1hist->GetBinContent(101) << endl;
cout << "G2 overflow " << diffFromLinG2hist->GetBinContent(101) << endl;
g1overg2_isEdge->SetLineColor(kBlue);
g1overg2_isInnerEdge->SetLineColor(kCyan);
g1overg2_isDouble->SetLineColor(kGreen+2);
g1overg2_isNextToDouble->SetLineColor(kRed);
g1overg2_isQuad->SetLineColor(kOrange);
g1overg2_isEdge->Scale(1./g1overg2_isEdge->GetEntries());
g1overg2_isInnerEdge->Scale(1./g1overg2_isInnerEdge->GetEntries());
g1overg2_isDouble->Scale(1./g1overg2_isDouble->GetEntries());
g1overg2_isNextToDouble->Scale(1./g1overg2_isNextToDouble->GetEntries());
g1overg2_isQuad->Scale(1./g1overg2_isQuad->GetEntries());
g1overg2_isBulk->Scale(1./g1overg2_isBulk->GetEntries());
TLegend *leg = new TLegend(0.62,0.6,0.93,0.93);
leg->AddEntry(g1overg2_isBulk, "Normal", "l");
leg->AddEntry(g1overg2_isDouble, "Double", "l");
leg->AddEntry(g1overg2_isNextToDouble, "Next to D", "l");
leg->AddEntry(g1overg2_isEdge, "Edge", "l");
leg->AddEntry(g1overg2_isInnerEdge, "Inner E", "l");
g1overg2_isDouble->GetXaxis()->SetTitle("G1 / G2");
g1overg2_isDouble->GetYaxis()->SetTitle("Normalised");
g1overg2_isDouble->GetYaxis()->SetTitleOffset(1.3);
g1overg2_isDouble->SetMinimum(0.0);
g1overg2_isDouble->SetMaximum(0.16);
g1overg2_isDouble->Draw();
g1overg2_isEdge->Draw("same");
g1overg2_isInnerEdge->Draw("same");
g1overg2_isNextToDouble->Draw("same");
g1overg2_isBulk->Draw("same");
leg->Draw("same");
sprintf(savename,"plots/M%s/CurrentSource/g1overg2_perType.png", module_str.c_str());
c1->SaveAs((const char *)(savename));
mapcanvas->cd();
g1map->GetXaxis()->SetTitle("Column");
g1map->GetYaxis()->SetTitle("Row");
g1map->GetYaxis()->SetTitleOffset(0.7);
if (module_str == "032") {
g1map->GetZaxis()->SetRangeUser(-12000,-4000);
} else if (module_str == "022" || module_str == "021" || module_str == "006" || module_str == "008" || module_str == "044") {
g1map->GetZaxis()->SetRangeUser(-3000,0);
}
g1map->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/g1map.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
g2map->GetXaxis()->SetTitle("Column");
g2map->GetYaxis()->SetTitle("Row");
g2map->GetYaxis()->SetTitleOffset(0.7);
if (module_str == "032") {
g2map->GetZaxis()->SetRangeUser(-800,-400);
} else if (module_str == "022" || module_str == "021" || module_str == "006" || module_str == "008" || module_str == "044") {
g2map->GetZaxis()->SetRangeUser(-200,-50);
}
g2map->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/g2map.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
g1overg2map->GetXaxis()->SetTitle("Column");
g1overg2map->GetYaxis()->SetTitle("Row");
g1overg2map->GetYaxis()->SetTitleOffset(0.7);
g1overg2map->GetZaxis()->SetRangeUser(11,15);
g1overg2map->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/g1overg2map.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
g1overg2map->GetXaxis()->SetRangeUser(0,256);
g1overg2map->GetYaxis()->SetRangeUser(240,280);
g1overg2map->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/g1overg2map_zoom.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
g1overg2ermap->GetXaxis()->SetTitle("Column");
g1overg2ermap->GetYaxis()->SetTitle("Row");
g1overg2ermap->GetYaxis()->SetTitleOffset(0.7);
g1overg2ermap->GetZaxis()->SetRangeUser(0,0.5);
g1overg2ermap->Draw("colz");
sprintf(savename,"plots/M%s/CurrentSource/g1overg2ermap.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
g1ermap->GetXaxis()->SetTitle("Column");
g1ermap->GetYaxis()->SetTitle("Row");
g1ermap->GetYaxis()->SetTitleOffset(0.7);
g1ermap->Draw("colz");
g1ermap->GetZaxis()->SetRangeUser(0,50);
sprintf(savename,"plots/M%s/CurrentSource/g1ermap.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
g2ermap->GetXaxis()->SetTitle("Column");
g2ermap->GetYaxis()->SetTitle("Row");
g2ermap->GetYaxis()->SetTitleOffset(0.7);
g2ermap->Draw("colz");
g2ermap->GetZaxis()->SetRangeUser(0,5);
sprintf(savename,"plots/M%s/CurrentSource/g2ermap.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
diffFromLinG1map->GetXaxis()->SetTitle("Column");
diffFromLinG1map->GetYaxis()->SetTitle("Row");
diffFromLinG1map->GetYaxis()->SetTitleOffset(0.7);
diffFromLinG1map->Draw("colz");
diffFromLinG1map->GetZaxis()->SetRangeUser(-0.04,0.04);
sprintf(savename,"plots/M%s/CurrentSource/diffFromLinG1map.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
diffFromLinG2map->GetXaxis()->SetTitle("Column");
diffFromLinG2map->GetYaxis()->SetTitle("Row");
diffFromLinG2map->GetYaxis()->SetTitleOffset(0.7);
diffFromLinG2map->Draw("colz");
diffFromLinG2map->GetZaxis()->SetRangeUser(-0.1,0.1);
sprintf(savename,"plots/M%s/CurrentSource/diffFromLinG2map.png", module_str.c_str());
mapcanvas->SaveAs((const char *)(savename));
sprintf(savename,"data/M%s/CS_ratio_M%s.root", module_str.c_str(), module_str.c_str());
TFile* saved_file2 = new TFile((const char *)(savename),"RECREATE");
g1overg2map->Write();
g1overg2ermap->Write();
saved_file2->Close();
}
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