#!/bin/bash

if [[ "$0" == *"filename_creator.sh"* ]]; then
    echo "script changes env. variables: should be invoked with source, not sh "    
    exit
    
fi


echo $0
echo "printing filenames for module " $1

datafolder="/mnt/sls_det_storage/jungfrau_calib/data/Module_"$1"_Calib/"
datestring=$(date +%F)
echo "mkdir "$datafolder "if not already existing."
mkdir -p $datafolder 


export TKBPG0="ju_udp_receiver_3threads_2_0 S "$datafolder"BP_M"$1"_"$datestring"_ 10.1.4.105"

export TKBPHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"BP_M"$1"_"$datestring"_HGOG1G2_ 10.1.4.105"                                                                               

export TKCSHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CS_M"$1"_"$datestring"_HGOG1G2_ 10.1.4.105"

export TKCSG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CS_M"$1"_"$datestring"_ 10.1.4.105"




echo "exporting the fluorescence receiver commands "
export TKFG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CuFluoG0_M"$1"_"$datestring"_ 10.1.4.105"
export TKFHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"CuFluoHG0_M"$1"_"$datestring"_ 10.1.4.105"
export TKPG0="ju_udp_receiver_3threads_2_0 S "$datafolder"pedeG0_M"$1"_"$datestring"_ 10.1.4.105"
export TKPHG0="ju_udp_receiver_3threads_2_0 S "$datafolder"pedeHG0_M"$1"_"$datestring"_ 10.1.4.105"





echo "printing the analysis commands " 
for file in $(find $datafolder -type f -exec basename {} \; | grep 000000 ); do 
    prefix=${file%_000000.dat}
    echo $prefix ; 
    if [[ $prefix == *"BP"* ]]; then

	    bpfile=$prefix
  
    fi
     if [[ $prefix == *"CS"* ]]; then

	   	csfile=$prefix 

    fi
    if [[ $prefix == *"oG0"* ]]; then

	   cgofile=$prefix

    fi 
    if [[ $prefix == *"eG0"* ]]; then

	   pgofile=$prefix

    fi 
    if [[ $prefix == *"oHG0"* ]]; then

	   chgofile=$prefix

    fi 
    if [[ $prefix == *"eHG0"* ]]; then

	   phgofile=$prefix

    fi 

#    echo "ss"
done
echo "----------------------------------------------------------------------"
echo "---------------------START OF ANALYSIS CLI commands --------------------"
echo "----------------------------------------------------------------------"
echo "M"$1
echo "./BP_analysis "$1" "$datafolder$bpfile
echo "./CS_analysis "$1" "$datafolder $csfile
echo "./CuFluo_analysis "$1" G0 "$datafolder $pgofile $cgofile 
echo "./CuFluo_analysis "$1" HG0 "$datafolder $phgofile $chgofile 
echo "./JFMC_CalibWriter_wBP" "$1"
echo " "
echo "----------------------------------------------------------------------"
echo "---------------------END OF ANALYSIS CLI commands --------------------"
echo "----------------------------------------------------------------------"


echo "creating the output folders?   Y for yes "
read -n 1 -s input
if [[ $input = "Y" ]]; then 
    echo "creating the output folders."
    plotbasefolder="/afs/psi.ch/project/mythen/sophie/JFCalibration/plots/M"$1
    mkdir -v $plotbasefolder
    mkdir -v $plotbasefolder"/BackplanePulsing"
#    mkdir -v $plotbasefolder"/Calib_"$datestring #done by/JFMC_CalibWrite 
    mkdir -v $plotbasefolder"/CuFluo"
    mkdir -v $plotbasefolder"/CuFluo/G0"
    mkdir -v $plotbasefolder"/CuFluo/HG0"
    mkdir -v $plotbasefolder"/CurrentSource"
    outdatabasefolder="/afs/psi.ch/project/mythen/sophie/JFCalibration/data/M"$1
    mkdir -v $outdatabasefolder
    echo "Output folders created"
  
else
    echo "Exiting script"
 
fi